ID:

dan_766

 Coordinate:

scaffold_12928:579007-579157 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6 -12.7

Flybase annnotation

CDS [Dana\GF20618-cds]; exon [dana_GLEANR_3526:8]; intron [Dana\GF20618-in]; intron [Dana\GF20618-in]

Repeatable elements

NameClassFamilyStrand
DMCR1ALINECR1-
DMCR1ALINECR1-
mature
  1. scaffold_353:191-216 +
  2. scaffold_4382:1293-1318 +
  3. scaffold_5063:845-870 +
  4. scaffold_7440:7171-7196 +
  5. scaffold_9692:3758-3783 +
  6. scaffold_9723:19054-19079 +
  7. scaffold_9894:5696-5721 +
  8. scaffold_12570:3989-4014 +
  9. scaffold_12838:1488-1513 +
  10. scaffold_12857:1829-1854 +
  11. scaffold_13045:194030-194055 +
  12. scaffold_13082:506542-506567 +
  13. scaffold_13082:3697211-3697236 +
  14. scaffold_13137:650751-650776 +
  15. scaffold_13165:326106-326131 +
  16. scaffold_13230:3130946-3130971 +
  17. scaffold_13230:3146270-3146295 +
  18. scaffold_13339:1708968-1708993 +
  19. scaffold_13417:3537448-3537473 +
  20. scaffold_13469:791785-791810 +
  21. scaffold_1073:508-533 -
  22. scaffold_1575:326-351 -
  23. scaffold_4651:59-84 -
  24. scaffold_12371:1146-1171 -
  25. scaffold_12401:4009-4034 -
  26. scaffold_12913:144209-144234 -
  27. dan_766  scaffold_12928:579009-579034 -
  28. scaffold_12928:582037-582062 -
  29. scaffold_12947:192097-192122 -
  30. scaffold_12947:456478-456503 -
  31. scaffold_12949:30988-31013 -
  32. scaffold_13045:66888-66913 -
  33. scaffold_13082:559426-559451 -
  34. scaffold_13099:2497071-2497096 -
  35. scaffold_13099:2587044-2587069 -
  36. scaffold_13118:4769-4794 -
  37. scaffold_13131:55864-55889 -
  38. scaffold_13230:85868-85893 -
  39. scaffold_13272:65984-66009 -
  40. scaffold_13339:1480319-1480344 -
star
  1. scaffold_7440:14501-14521 -
  2. scaffold_12085:1266-1286 -
  3. scaffold_12402:3814-3834 -
  4. scaffold_12775:443-463 -
  5. scaffold_12913:144244-144264 -
  6. dan_766  scaffold_12928:579044-579064 -
  7. scaffold_13034:994233-994253 -
  8. scaffold_13082:2740-2760 -
  9. scaffold_13082:233408-233428 -
  10. scaffold_13082:1227847-1227867 -
  11. scaffold_13099:1225035-1225055 -
  12. scaffold_13111:1401318-1401338 -
  13. scaffold_13228:1009173-1009193 -
  14. scaffold_13250:1465606-1465626 -
  15. scaffold_13260:85726-85746 -
  16. scaffold_13260:1160727-1160747 -
  17. scaffold_13260:1173827-1173847 -
  18. scaffold_13339:2493115-2493135 -
  19. scaffold_13339:3572579-3572599 -
  20. scaffold_13770:661804-661824 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#############-------------------------------------
CAACACGATCCGTTCAGGGTATTATGTTCGGACTACAATGGTCTCTACCACATCTTATCACTTTGCTCTACTAACAATCTTAAATCGCTTATATTAACCGCCTTATCTATGCAACACTCTTCCTCGTAATATCTTTCTCCTAATCCTCGCTTATCTATCTCGGATCTATTCCCGCGATTCGAGCCGTACGTTACGCGGCAGCGTCCCTCGGTCGGTTGGACGGGAGGTGGGCTGTACGTATGCAGTGGGAG
***********************************************************************************************************************************************.....((......((((((((((.........))))))))......))......))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 M044
female body
 V039
embryo
.............................................................................................................................................................................GCGATTCGAGCCGTACGTTACGCGGC.................................................... 26 0 20 0.20 4 0 4 0 0
........................................................................................................................................................................................................GCGTCCCTCGGTCGGTTGGACGGGA.......................... 25 0 20 0.10 2 0 2 0 0
....................ATTATGTTCGGACTACAATGGTCTCTA............................................................................................................................................................................................................ 27 0 20 0.10 2 0 0 2 0
...............................................................................................................................................TCCTCGCTTATCTATCTCGGA....................................................................................... 21 0 20 0.05 1 0 0 0 1
.............................................TACCACATCTTATCACTTTGC......................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
.........................................TCTCTACCACATCTTATCACTTTGC......................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
.........................................................TCACTTTGCTCTACTAACAATCTGA......................................................................................................................................................................... 25 1 20 0.05 1 0 0 1 0
.........................................................................................................................................................................................GTACGTTACGCGGCAGCGTCGCC........................................... 23 2 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................................CGGTTGGACGGGAGGTGGGC................... 20 0 20 0.05 1 0 0 1 0
...........................TCGGACTACAATGGTCTCTACCACATCT.................................................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
......................................................................................GCTTATATTAACCGCCTTATCTA.............................................................................................................................................. 23 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................................................CCGTAGGTTACGCGGCAGCGTCCCTC.......................................... 26 1 20 0.05 1 1 0 0 0
...........................................................................................................................TCGTAATATCTTTCTCCTAATCCTCGCT.................................................................................................... 28 0 20 0.05 1 0 0 1 0
....................................................................................................................................................................................................................CCGTTGGACGGGAGGTGGGCTGT................ 23 1 20 0.05 1 0 1 0 0
........................................................................................TTATATTAACCGCCTTATCTATGCAACA....................................................................................................................................... 28 0 20 0.05 1 0 0 1 0
.............................................................................................................TTCAACACTCTTCCTCGTAATATCT..................................................................................................................... 25 1 20 0.05 1 1 0 0 0
...........................TCGGACTACAATGGTCTCTACCAC........................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0
.........................................................................................................................................................................................................................GGACGGGAGGTGGGCTGTA............... 19 0 20 0.05 1 0 0 1 0
................................................................................TAAATCGCTTATATTAACCGCCTTATC................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

GTTGTGCTAGGCAAGTCCCATAATACAAGCCTGATGTTACCAGAGATGGTGTAGAATAGTGAAACGAGATGATTGTTAGAATTTAGCGAATATAATTGGCGGAATAGATACGTTGTGAGAAGGAGCATTATAGAAAGAGGATTAGGAGCGAATAGATAGAGCCTAGATAAGGGCGCTAAGCTCGGCATGCAATGCGCCGTCGCAGGGAGCCAGCCAACCTGCCCTCCACCCGACATGCATACGTCACCCTC
****************************************************.....((......((((((((((.........))))))))......))......))*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V106
head
 V105
male body		 V055
head
.....................................................................................................................................................................................................................CCAACCTGCCCTCCACCCGACATGCAT........... 27 0 20 22.45 449 449 0 0 0 0 0
........................................................................................................................................................................AAGGGCGCTAAGCTCGGCATGCAAT.......................................................... 25 0 20 1.15 23 0 23 0 0 0 0
.......................................................................................................................................................................................GGCATGCAATGCGCCGTCGCAGGGAG.......................................... 26 0 20 0.85 17 17 0 0 0 0 0
......................................................................................................AATAGATACGTTGTGAGAAGGAGCATT.......................................................................................................................... 27 0 20 0.80 16 16 0 0 0 0 0
...........................AGCCTGATGTTACCAGAGATGGTGTAG..................................................................................................................................................................................................... 27 0 20 0.60 12 0 12 0 0 0 0
.........................................................................................................................................AGGATTAGGAGCGAATAGATAGAGCCT....................................................................................... 27 0 20 0.20 4 1 3 0 0 0 0
.........................................................................................................................................................................AGGGCGCTAAGCTCGGCATGCAAT.......................................................... 24 0 20 0.20 4 4 0 0 0 0 0
......................................................................................CGAATATAATTGGCGGAATAGATACGT.......................................................................................................................................... 27 0 20 0.20 4 0 4 0 0 0 0
....................................................................................................................................................................................................CCGTCGCAGGGAGCCAGCCAAC................................. 22 0 20 0.20 4 0 0 0 4 0 0
.....................................................................................................GAATAGATACGTTGTGAGAAGGAGCAT........................................................................................................................... 27 0 20 0.20 4 0 4 0 0 0 0
...................................................................................................................................................................................................................AGCCAACCTGCCCTCCACCCGACAT............... 25 0 20 0.20 4 0 4 0 0 0 0
.................................................................................................................................................................................................................................CCACCCGACATGCATACGTCACCCT. 25 0 20 0.20 4 4 0 0 0 0 0
............................................................................................................................................................................................GCAATGCGCCGTCGCAGGGAGCCAGC..................................... 26 0 20 0.20 4 4 0 0 0 0 0
.......................................CCAGAGATGGTGTAGAATAG................................................................................................................................................................................................ 20 0 20 0.15 3 1 0 0 2 0 0
...................................................................................................CGGAATAGATACGTTGTGAGAAGGA............................................................................................................................... 25 0 20 0.15 3 0 3 0 0 0 0
..........................AAGCCTGATGTTACCAGAGATGGTGTA...................................................................................................................................................................................................... 27 0 20 0.15 3 0 3 0 0 0 0
............................................................................................................TACGTTGTGAGAAGGAGCATT.......................................................................................................................... 21 0 20 0.15 3 3 0 0 0 0 0
...........................................AGATGGTGTAGAATAGTGAAACGAG....................................................................................................................................................................................... 25 0 20 0.15 3 2 1 0 0 0 0
................................................................................................................................................GGAGCGAATAGATAGAGCCTTGAT................................................................................... 24 1 20 0.10 2 0 2 0 0 0 0
.........................................................................................................AGATACGTTGTGAGAAGGAGCATTAT........................................................................................................................ 26 0 20 0.10 2 0 0 2 0 0 0
..........................................................................................................GATACGTTGTGAGAAGGAGCATT.......................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0
.............................................................................................................................................................................................................................CCCTCCACCCGACATGCATACGTCAC.... 26 0 20 0.10 2 1 1 0 0 0 0
.............................CCTGATGTTACCAGAGATGGTGTAGAAT.................................................................................................................................................................................................. 28 0 20 0.10 2 0 2 0 0 0 0
........................................................................................................................................................................AAGGGCGCTAAGCTCGGCATGCAATGC........................................................ 27 0 20 0.10 2 0 2 0 0 0 0
.................................................................................................GGCGGAATAGATACGTTGTGAGAAG................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0
...........................................................................................................ATACGTTGTGAGAAGGAGCATT.......................................................................................................................... 22 0 20 0.10 2 1 1 0 0 0 0
.....................................................................................................................................................................................................................CCAACCTGCCCTCCACCCGACATGCATCC......... 29 1 20 0.10 2 0 2 0 0 0 0
......................................................................................................AATAGATACGTTGTGAGAAGGAGCAGT.......................................................................................................................... 27 1 20 0.10 2 0 2 0 0 0 0
.................CCATAATACAAGCCTGATGTTAC................................................................................................................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0
.............................CCTGATGTTACCAGAGATGGTGTAGAA................................................................................................................................................................................................... 27 0 20 0.10 2 0 0 2 0 0 0
.TTGTGCTAGGCAAGTCGCATAATAC................................................................................................................................................................................................................................. 25 1 20 0.10 2 2 0 0 0 0 0
.........................................AGAGATGGTGTAGAATAGTGA............................................................................................................................................................................................. 21 0 20 0.10 2 2 0 0 0 0 0
........................................................................................................................................................................................GCATGCAATGCGCCGTCGCAGGGAGC......................................... 26 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................TGCCCTCCACCCGACATGCATA.......... 22 0 20 0.05 1 0 1 0 0 0 0
.................................ATGTTACCAGAGATGGTGTAGAAT.................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................CCTAGATAAGGGCGCTAAGCT..................................................................... 21 0 20 0.05 1 0 0 0 0 0 1
....................................................AGAATAGTGAAACGAGATGATTGTTA............................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0
......................................................................................................................................AAGAGGATTAGGAGCGAATAG................................................................................................ 21 0 20 0.05 1 0 0 0 0 1 0
...........................................................................................................................................................................................................................TGCCCTCCACCCGACATGCATACGTC...... 26 0 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................................................CCAGCCAACCTGCCCTCCACCCGACA................ 26 0 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................................................GATAAGGGCGCTAAGCTCGGCATG.............................................................. 24 0 20 0.05 1 1 0 0 0 0 0
...................ATAATACAAGCCTGATGTTACCAGAG.............................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................GGATTAGGAGCGAATAGATA............................................................................................. 20 0 20 0.05 1 0 0 0 0 1 0
........................ACAAGCCTGATGTTACCAGAG.............................................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................................................AGCCAACGTGCCCTCCACCCGACATGCAT........... 29 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................TGGAGCGAATAGATAGAGCCTAGATA.................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................CTGCCCTCCACCCGACATGCATA.......... 23 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TCCACCCGACATGCATACGTCACCCT. 26 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................TGCAATGCGCCGTCGCAGGGAGCCA....................................... 25 0 20 0.05 1 0 1 0 0 0 0
........................ACAAGCCTGATGTTACCAGAGATG........................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
GTTGTGCTAGGCAAGTCCCATAACAC................................................................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0
.....................................................GACTAGTGAAACGAGATGATTGTT.............................................................................................................................................................................. 24 1 20 0.05 1 0 0 1 0 0 0
....................................................................................................GGAATAGATACGTTGCGAGAAGGAG.............................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................AGGATTAGGAGCGAATAGATAGAGCC........................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0
.............................CCTGATGTTACCAGAGATGGTGT....................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0
...............................................................................................TGGGCGGAATAGATACGTTGTGAGA................................................................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0
.........................................................................................................................................................................AGGGCGCTAAGCTCGGCATG.............................................................. 20 0 20 0.05 1 1 0 0 0 0 0
........AGGCAAGTCCCATAATACAAGCCTG.......................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
..............................................................................................................CGTTGTGAGAAGGAGCATTAT........................................................................................................................ 21 0 20 0.05 1 0 0 0 0 1 0
.......................................................................................................................................................................................GGCATGCAATGCGCCGTCGCAGGGATC......................................... 27 1 20 0.05 1 0 1 0 0 0 0
...........................................................TGAAACGAGATGATTGTTAGAAT......................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................................................................................AGGGAGCCAGCCAACCTGCCCTCCA....................... 25 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................TGTGAGAAGGAGCATTATAGAAAG.................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0
.........................................................AGTGAAACGAGATGATTGTTAGAAT......................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0
..........................................................................................................GATACGTTGTGAGAAGGAGCATTATAG...................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
..............................CTGATGTTACCAGAGATGGTGTAGACT.................................................................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................AGATACGTTGTGAGAAGGAGTATT.......................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
...............................................................................................................GTTGTGAGAAGGAGCATTATA....................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................ATAGAGCCTAGATAAGGGCGCTAAGCT..................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................GATAGAGCCTAGATAAGG............................................................................... 18 0 20 0.05 1 1 0 0 0 0 0
............................................GATGGTGTAGAATAGTGAAACGAGAT..................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.......................................CCAGAGATGGTGTAGAATAGT............................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0
......................................................................................................................GAAGGAGCATTATAGAAAGAGGAT............................................................................................................. 24 0 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................GAAAGAGGATTAGGAGCGAAT.................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0
.......................................................................................................ATAGATACGTTGTGAGAACGAGCAT........................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................AGATACGTTGTGAGAAGGAGCATTATA....................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
............................................................................................................................................................................................................................GCCCTCCACCCGACATGCATACGTC...... 25 0 20 0.05 1 0 0 1 0 0 0
................CCCATAATACAAGCCTGATGT...................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
...........................................AGATGGTGTAGAATAGTGAAACGA........................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
.................................................TGTAGAATAGTGAAAGGAGATGAT.................................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................AGGAGCGAATAGATAGAGCCTAGATAAG................................................................................ 28 0 20 0.05 1 0 1 0 0 0 0
..................................................................................................................................................................................................CGCCGTCGCAGGGAGCCAGCCAAC................................. 24 0 20 0.05 1 0 0 0 1 0 0
....................................................................................................................................................................................................................GCCAGCCTGCCCTCCACCCGACATGCAT........... 28 1 20 0.05 1 1 0 0 0 0 0
........................................................................................................TAGATACGTTGTGAGAAGGAGCATTAT........................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
...............................TGATATTACCAGAGATGGTGTAGAAT.................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................AAGAGGATTAGGAGCGAATAGA............................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
................................GATGTTACCAGAGATGGTGTAGAA................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................AGAAAGAGGATTAGGAGCGAATAGAT.............................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12928:578957-579207 - dan_766 CAA-CACGATCCGT-TCAGGGTATTATGTTCGGACTACAATGGTCTCTACCACATCTTATC-ACTT--T-GC------TCTACTAAC----A-----ATCTTAAATCGCTT-ATATT------------------------------------------------AACCGCCTTATCT----ATGC---------------------------------------------------AACACTCTTCCTC---------------GTA-ATATCTTTCTCCTAA----------------T-CCTCG-C------TTAT-CTA-------------------T-CTC--------GGATCTA--------TTCCCGCGAT--TCG-AGCCGT-----ACGTTACGCGGCAGCGTCCC-TCGGTCGGTTGGACGGG-AGGTGGGCT-GT---ACG-TATGCAGTGGGA----G
droBip1 scf7180000395799:8126-8375 - T--------------TTAGGTTATTATGTTTCGACTAAAATTATCTCTTACACATAACTTTGCTTTGCTTTA------AATA---TC----A-----CTTTTA-A---------ACT------------------------------------------------TATATTCTTAACG----CCTTTTCTGAAG-------------------------------------------AACACTCTT-------------------GAACA--------CTCTTCCCTACACAAC---ACTC-TCTGAACT--G--TTCT-CTA------------------CT-ATT--------GGATCTA--------TCACCGCGAT--TCG-AGCAATGCTCGATGTCATGCGGCAGGGTCCC-TCGGTCGGTTGCACGGG-AGGTGGGCT-GT---ACG-TATGCAGTGGGC----G
droKik1 scf7180000301740:5935-6173 - A---CATGAACCTT-TTAAGGTTTTATGTACGGATTACAATCGCCTCTCTGATATTATTAT-TCGTAGTGATACACCTTCTT-TGCG----T-----TTTTTATATATTTATATGTTTATGTT-------------------------------------ATATTAT--------TTT----TTTTCATATATTTTTTTTGTT--------------------------------------------------------------ATCTTCTAATGTTTCCTCG----------------TTT-TTTTCC--T--TCTT-T----------------------------------A-----A------TTCTAACGCGAT--TCG-TGTCGT-----ACGTCACACGGCTGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGG------------------------------
droFic1 scf7180000453924:137479-137734 + CTG-CACGATCCTT-ACAGAGTATTATATTCTGACTATAATAGACTTTATCCTATTATATC-AATTTCTGAC------TCTC-TGCC----G-----CTTTTAAAACGATCTCTTCT------------------------------------------------AACTTCTTTAGCT----CATAATTAGATCTAA--------------------------------------------------TTGT------------GTTCCTT-CTAACTTTCCTCGG---------G-------C-TTTTCTT-A--TTTTTCTA-------------------A-GTC--------GCGACTC------TTTTCTCGCGAA--CCG-AGCCGT-----ACGATACACGGCAGCGCCCC-TCTGTCGGTTGGGCGGG-AGGTTGT--------------GGCCGTGGGA----T
droEle1 scf7180000488647:191-439 - TAATTATGAGCCTT-TTAGAGTATTATGTTCGGACTATAACAGATTTTTTCCTATA---TC-ATATCCTGAC------TTTC-TGACTTCCGACTTCCTCTTAAAACGTTTCATCAT------------------------------------------------TACTTCACAAGTA----CAAA---------------------------------------------------TTTTT------TT------------CTA---CT------TTTTTCCGG---------ACT-TTTTTTCACCTT--A--TTTTCATA-------------------T-CTC--------GCGTCTA---------TCTCGCGAA--TCG-TGCCGT-----ACGAAACTCGGCTGCACCCA-TCGGTCGGCTG-ACGGG-TGGTGGGCC----------------GTGTAAC---C
droRho1 scf7180000780018:8717-8980 - TTG-CATGAGCATT-TCAGAGTATTATGTTCTGACTATAATAGACTTTTTCCTATAATCTC-AAAACTTGAC------TCTC-TGTC----G-----CTCCTAAAACGATTAATACT------------------------------------------------AGCTTCATTGGCA----TTAA---------------------------------------------------ATTAATCTTACTGT------------TA---CT--TT-TTTTCCCCGG---------A-------CCTTTACTTAATTTTTC-TTA-------------------T-CTC--------GCGTCTA------TCTTCTCGCAAA--TCG-TGCCGT-----ACGATACACCGCAGCGCCCC-TCGGTCGGTTGGGCGGGTAAGTGGTCC-AC-TTACT-TGTGCAG-AAGA----A
droBia1 scf7180000301652:26040-26258 - TTG-CAGGAACCTTTTCAGAATATTATTTTTTGACTATAATAGACTTTATCCGATTATCTC-AAAACGTGAC------TCTC-TGCC----T-----CTCCGAAAACAATTATTATT------------------------------------------------ACATTTTCTAGCA----CAGA---------------------------------------------------CTGATTCTCAATT-------------------------TTTTTCTCGA---------A-------CCAAGTT------TTTT-CTA-----------------------C--------GCGACGACA------TCTTATTATT--TAG-TACCGT-----ACAACGCACGGCAGCGCCTCTTCGGTCGGTTGGGCG---------------------------------------
droTak1 scf7180000414608:3300-3547 - AAG-CATGAACCTT-TCAGAGTACTATGTTCTGACTATAATAGACTTTATCCTATTATATC-AAATTCTGAC------TCTC-TGCC----T-----CTCCTAAAACGATTAATATT------------------------------------------------AAATTTCCTAGCA----CATAATTAGATCCTA--------------------------------------------------CTT-------------------------TTTTCCTCGA---------ACT-ATATT----TTT--A--TTTT-CTA-------------------C-ATC--------GCGTCTA------TCATCTCGCGAA--TCG-TGCCGT-----ACGATACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------GGCCGTAGGACTCCG
droEug1 scf7180000405916:1429-1664 + CAA-CATGAACCAT-TTCGGGTATTATGTTCAAACTATAATGATCTTTATAACATTACTTC-TAACTCT---------TCTCCTAAC----A-----GTT-TGAAAGTTTTGATACT------------------------------------------------AATCCATTTAGCA----CAAA---------------------------------------------------ACTAA---------------------------------CTTTCCTCGT---------A-------TCTTGACT------AAT-CCA---------------------CTC--------GGATCTA--------TCCCCATGTT--CCG-AGCCGT-----ACGTCAGGCGGCAGCGTCCC-TCGGTCGGTTGGGCGGG-AGGTGGGAT-GC---ATGTCAAGGAACGGGA----G
dm3 chr3RHet:2194563-2194821 + TTG-CATGACCCTT-ACAGAGTTTTATGTTCTGACTATAATAGACTTTATCCTATTATCTG-TAATCTTGAC------TCTC-TGCC----G-----CTCTTAAAG----------------------------------------------------------------------AT----CCTAATTAGATCCTACTAACAGTAATATTTAATATAGTTATTTTACAT--------------------------------------TATATTCATTTTCTCG----------------TTCCTGTTCT--C--TTTT-TTA-------------------T-ATC--------GCGTCTATA----TCTTCTCGCGAA--TCG-AGCCGT-----ACGATACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------GGCCGTGGGA----C
droSim2 node_39013:646-894 + TTG-CATGATCCCT-ACAGAGTATTATGTTCTGACTATAATAGATTCTATCCTATTATCTC-TAATTCTGAC------TCTC-TGCC----G-----TTTTTAAAGCGATCAATACT------------------------------------------------AACGTACTTAACG----AATTCTTAGATATTACTACTA--------------------------------------------------------------GCATACATATATTTCCTCG----------------T-CCTTTACT--G--TCTT-CTA-------------------T-ATC--------GCGTCTA------TCTTCCCGCGAT--TCG-AGCCGT-----ACGATACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------GGCCGT---------
droSec2 scaffold_5777:990-1238 - TTG-CATGACCCTT-ACATAGTTTTATGTTCTGACTATAATAGACTTTATCCTATTATCTG-TAATCTTGAC------TCTC-TGCC----G-----CTATTAAAT-ATTT------------------------------------------------------AACATAGTTA-----------------------------------------------TTCCACATTATCTATTT--CTA---TTT------------CTA---TTTCTATTCTTTCTAT----------------TTTCTATTCT--A--TTTT-TTA-------------------T-ATC--------GCGTCTATA----TCTTCTCGCGAA--TCG-AGCCGT-----ACGATACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------GGCCGTGGGA----C
droYak3 v2_chr2L_random_028:448705-448958 - TTG-CATGATCCCT-ACAGAGTATTATGTTCTGACTATAATAGATTCTATCCTATTATCTC-TAATTCTCAC------TCTC-TGCC----G-----TTTTTAAAGCGATCAATACT------------------------------------------------AACATACTTAACG----AATTCTTAGATATTACTACTA--------------------------------------------------------------GCATACATATATTTCCTCG----------------T-CCTTTACT--G--TCTT-CTA-------------------T-ATC--------GCGTCTA------TCTTCCCGCGAT--TCG-AGCCGT-----ACGATACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------GGCCGTGGGA----C
droEre2 scaffold_4845:314968-315231 - TTG-CAAGAACGCT-ACAGAGTATTATGTTCTGACTATAATATACTTTATCCTATTATCTC-TAATCCTGAC------TCTC-TGCC----G-----CTCTTAAAGCGATCAATACT------------------------------------------------AACTGTTTTAACA----CATAATTAGATCTTA--------------------------------------------------CTAA------------TA---TTTTCATATTTCCTCG----------------TTTTTTTGCT--G--TTCT-CTA-------------------T-ATC--------GT--CTATATCTATATTCACGCGAT--TCG-AGCCGT-----ACGATACATGGCAACGCCCC-TCGATCGGTTGGGGAGG-AGGA---CTCGT---CGG-GAGGCCGTGGGA----C
dp5 XL_group1e:11755014-11755290 - TTG-AATGAACCGT-TTGGGGTCTTATGCTCGGATTATAATTCCCTCTACCATATTTTATC-CACCACTAAT------TCTC-TTCC----T-----CTTAATAAATTACTTATCCT------CACACACCTTGCATGCTTAGTTCTCCTAGTAAGTTTAGTGCTAATTT------------------------------------------------------------------------------------------------------------TCCTCGTATATACATA---A-------------------------GTCTAACAGCTATCTTTC----CTGCATGTTCGCGTTC---------GGTTCGGTTA--ACG-CGTCGC-----GCGTCATGCGGCAGCACCCC-TCGGTCGGTTGGGAGGG-AGGAGGGCT-GT---GCT-T-TG-CCTGGGA----T
droPer2 scaffold_3:7332853-7333102 + TTG-GATGAACCGT-TTAGGGTCTTATGCTCGGCCTATAATTCCCTCTACCAGACTATATC-CACCTCTAAT------TCCC-TGCC----T-----CTTATTAAATTACTAATACT------------------------------------------------CACATATGTACCTGTCTCGTAATTAG----TAATTGTA--------------------------------------------GTT------------GTA---GTT---T----------------------A-------------------------GTCTAACAGCTGTCTTTCCTATTC--------GCGTTC---------GGCTCGGTTA--ACG-CGCCAC-----GCGTCATGCGGCAGCGCTCC-TCGGTCGGTTGGACGGC-AGGAGGGCA-TC---------C-GCCTGGGA----T
droWil2 scf2_1100000004928:184811-185056 + TTG-CATGAACCTT-TTCGAGTCCTATGTTCTGATTACAATCTTCTGTACCC-GTAATCAG-ATCAGAAGCC------TCTC-TTTT----C-----CTTGTGAAAACTTCTATTTT------------------------------------------------AGCACATTTAGCT----CGTAATTAGCTGTAGTTAAT----------------------------------------------------------------CATATTTTTAATTGATTG----------------T-CC------------GTT-T---------------------TATTT--------GTATTT--------GTCCACGCGA---TCG-TGCCGT-----CCGATATGCGGCTGCGCCCC-ACGGTCGGTCGGGCGGG-AGGTGGACA-GC---GCT-C-TG-CTT-GGG----C
droVir3 scaffold_13050:2209175-2209437 + TTG-CATTAACCGT-GCAGTTTTCTCTGTGATGACTATAACTAGCATTACAGGGTATTCCG-CTCGGAGTCT------ACTC-TTCC----T-----CTTATAAAGTCTTCTATTCT------------------------------------------------AAACTATTTACCA----AGAA---------------------------------------------------GATATTCTTATTATTATTTGGAATTGTA---TTTGTAT---------------------------ACATAGTT--G--TAGT-TTG-------------------T-ATC--------GTTTTTT------T-TTTTACTATT--TCG-TATCGT-----ACGTTACACCACTGCGCCCC-TCGGTTGGTTGGGCGGG-GGGTGGGAT-GCAGTACG-T-TGCATCGGGA----T
droMoj3 scaffold_6500:32029272-32029378 + TTG-CATAGTGCGT-TTTATGTTCTTTGTGTTAACTTTAATAAATATTATCACGTATTTTC-CTTAGAGCTC------TCTC-TTCC----T-----AAATTAAAATCTTTACTATT------------------------------------------------AGCTTATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:709581-709777 - ATG-CATAATCCTT-TTAGGATCTTATGCACAAATTATAATATGCGTTTTCCATTAATAAG-TTGTGCTTCT------TCTA-TTTC----T-----TTTATTATATCTGGTGTGTC------------------------------------------------AAGTCGATTAGTA----AGTA---------------------------------------------------------------------------------------------------------------A-------------------------GTCTA------------------------------TCTA------GTTATTCGCGATCTTCGTAATCGC-----ACGTTATGCGGC-GCACCCC-TCGGTCGGTTGGGTGGG-AGGTGAGTC----------------GTA--------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CAA-CACGATCCGT-TCAGGGTATTATGTTCGGACTACAATGGTCTCTACCACATCTTATC-ACTT--T-GC------TCTACTAAC----A-----ATCTTAAATCGCTT-ATATT------------------------------------------------AACCGCCTTATCT----ATGC---------------------------------------------------AACACTCTTCCTC---------------GTA-ATATCTTTCTCCTAA----------------T-CCTCG-C------TTAT-CTA-------------------T-CTC--------GGATCTA--------TTCCCGCGAT--TCG-AGCCGT-----ACGTTACGCGGCAGCGTCCC-TCGGTCGGTTGGACGGG-AGGTGGGCT-GT---ACG-TATGCAGTGGGA----GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................GCGAT--TCG-AGCCGT-----ACGTTACGCGGC...............................................................26200.204000004
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCCC-TCGGTCGGTTGGACGGG-A...................................25200.102000002
......................ATTATGTTCGGACTACAATGGTCTCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
............................................................................................................................................................................................................................................................................................................T-CCTCG-C------TTAT-CTA-------------------T-CTC--------GGA..................................................................................................................21200.051001000
...............................................TACCACATCTTATC-ACTT--T-GC------..........................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
...........................................TCTCTACCACATCTTATC-ACTT--T-GC------..........................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTGGACGGG-AGGTGGGC............................20200.051100000
.............................TCGGACTACAATGGTCTCTACCACATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
...........................................................................................................GCTT-ATATT------------------------------------------------AACCGCCTTATCT----A.................................................................................................................................................................................................................................................................................................23200.051010000
........................................................................................................................................................................................................................................................TC---------------GTA-ATATCTTTCTCCTAA----------------T-CCTCG-C------T............................................................................................................................................................28200.051100000
.............................................................................................................TT-ATATT------------------------------------------------AACCGCCTTATCT----ATGC---------------------------------------------------AACA.......................................................................................................................................................................................................................................28200.051100000
.............................TCGGACTACAATGGTCTCTACCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGGG-AGGTGGGCT-GT---A....................19200.051100000
.....................................................................................................TAAATCGCTT-ATATT------------------------------------------------AACCGCCTTATC.......................................................................................................................................................................................................................................................................................................27200.051010000
droBip1
T--------------TTAGGTTATTATGTTTCGACTAAAATTATCTCTTACACATAACTTTGCTTTGCTTTA------AATA---TC----A-----CTTTTA-A---------ACT------------------------------------------------TATATTCTTAACG----CCTTTTCTGAAG-------------------------------------------AACACTCTT-------------------GAACA--------CTCTTCCCTACACAAC---ACTC-TCTGAACT--G--TTCT-CTA------------------CT-ATT--------GGATCTA--------TCACCGCGAT--TCG-AGCAATGCTCGATGTCATGCGGCAGGGTCCC-TCGGTCGGTTGCACGGG-AGGTGGGCT-GT---ACG-TATGCAGTGGGC----GSizeHit CountTotal NormTotal
No Reads
droKik1
A---CATGAACCTT-TTAAGGTTTTATGTACGGATTACAATCGCCTCTCTGATATTATTAT-TCGTAGTGATACACCTTCTT-TGCG----T-----TTTTTATATATTTATATGTTTATGTT-------------------------------------ATATTAT--------TTT----TTTTCATATATTTTTTTTGTT--------------------------------------------------------------ATCTTCTAATGTTTCCTCG----------------TTT-TTTTCC--T--TCTT-T----------------------------------A-----A------TTCTAACGCGAT--TCG-TGTCGT-----ACGTCACACGGCTGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGG------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTG-CACGATCCTT-ACAGAGTATTATATTCTGACTATAATAGACTTTATCCTATTATATC-AATTTCTGAC------TCTC-TGCC----G-----CTTTTAAAACGATCTCTTCT------------------------------------------------AACTTCTTTAGCT----CATAATTAGATCTAA--------------------------------------------------TTGT------------GTTCCTT-CTAACTTTCCTCGG---------G-------C-TTTTCTT-A--TTTTTCTA-------------------A-GTC--------GCGACTC------TTTTCTCGCGAA--CCG-AGCCGT-----ACGATACACGGCAGCGCCCC-TCTGTCGGTTGGGCGGG-AGGTTGT--------------GGCCGTGGGA----TSizeHit CountTotal NormTotal
No Reads
droEle1
TAATTATGAGCCTT-TTAGAGTATTATGTTCGGACTATAACAGATTTTTTCCTATA---TC-ATATCCTGAC------TTTC-TGACTTCCGACTTCCTCTTAAAACGTTTCATCAT------------------------------------------------TACTTCACAAGTA----CAAA---------------------------------------------------TTTTT------TT------------CTA---CT------TTTTTCCGG---------ACT-TTTTTTCACCTT--A--TTTTCATA-------------------T-CTC--------GCGTCTA---------TCTCGCGAA--TCG-TGCCGT-----ACGAAACTCGGCTGCACCCA-TCGGTCGGCTG-ACGGG-TGGTGGGCC----------------GTGTAAC---CSizeHit CountTotal NormTotal
No Reads
droRho1
TTG-CATGAGCATT-TCAGAGTATTATGTTCTGACTATAATAGACTTTTTCCTATAATCTC-AAAACTTGAC------TCTC-TGTC----G-----CTCCTAAAACGATTAATACT------------------------------------------------AGCTTCATTGGCA----TTAA---------------------------------------------------ATTAATCTTACTGT------------TA---CT--TT-TTTTCCCCGG---------A-------CCTTTACTTAATTTTTC-TTA-------------------T-CTC--------GCGTCTA------TCTTCTCGCAAA--TCG-TGCCGT-----ACGATACACCGCAGCGCCCC-TCGGTCGGTTGGGCGGGTAAGTGGTCC-AC-TTACT-TGTGCAG-AAGA----ASizeHit CountTotal NormTotal
No Reads
droBia1
TTG-CAGGAACCTTTTCAGAATATTATTTTTTGACTATAATAGACTTTATCCGATTATCTC-AAAACGTGAC------TCTC-TGCC----T-----CTCCGAAAACAATTATTATT------------------------------------------------ACATTTTCTAGCA----CAGA---------------------------------------------------CTGATTCTCAATT-------------------------TTTTTCTCGA---------A-------CCAAGTT------TTTT-CTA-----------------------C--------GCGACGACA------TCTTATTATT--TAG-TACCGT-----ACAACGCACGGCAGCGCCTCTTCGGTCGGTTGGGCG---------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAG-CATGAACCTT-TCAGAGTACTATGTTCTGACTATAATAGACTTTATCCTATTATATC-AAATTCTGAC------TCTC-TGCC----T-----CTCCTAAAACGATTAATATT------------------------------------------------AAATTTCCTAGCA----CATAATTAGATCCTA--------------------------------------------------CTT-------------------------TTTTCCTCGA---------ACT-ATATT----TTT--A--TTTT-CTA-------------------C-ATC--------GCGTCTA------TCATCTCGCGAA--TCG-TGCCGT-----ACGATACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------GGCCGTAGGACTCCGSizeHit CountTotal NormTotal
No Reads
droEug1
CAA-CATGAACCAT-TTCGGGTATTATGTTCAAACTATAATGATCTTTATAACATTACTTC-TAACTCT---------TCTCCTAAC----A-----GTT-TGAAAGTTTTGATACT------------------------------------------------AATCCATTTAGCA----CAAA---------------------------------------------------ACTAA---------------------------------CTTTCCTCGT---------A-------TCTTGACT------AAT-CCA---------------------CTC--------GGATCTA--------TCCCCATGTT--CCG-AGCCGT-----ACGTCAGGCGGCAGCGTCCC-TCGGTCGGTTGGGCGGG-AGGTGGGAT-GC---ATGTCAAGGAACGGGA----GSizeHit CountTotal NormTotal
No Reads
dm3
TTG-CATGACCCTT-ACAGAGTTTTATGTTCTGACTATAATAGACTTTATCCTATTATCTG-TAATCTTGAC------TCTC-TGCC----G-----CTCTTAAAG----------------------------------------------------------------------AT----CCTAATTAGATCCTACTAACAGTAATATTTAATATAGTTATTTTACAT--------------------------------------TATATTCATTTTCTCG----------------TTCCTGTTCT--C--TTTT-TTA-------------------T-ATC--------GCGTCTATA----TCTTCTCGCGAA--TCG-AGCCGT-----ACGATACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------GGCCGTGGGA----CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................TTA-------------------T-ATC--------GCGTCTATA----TCTTCTCGC...............................................................................................252036.107220000100000000000000000040010000000002000000070407000010001000000000000000000000000000010000000000000000000000000000000000000000000001014000033100001164610713216000000000000000000000000000000000022411901100025000021000000000030039690125000000000000031000000000000000000000000000000000000000000000000030000027014020000317200000000000000041369000000
.......................................ATAGACTTTATCCTATTATCTG-TAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................272016.85337000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000340000030000000000000000000000000000000000000000000000000000000000000000000000000000000397319806100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TG-TAATCTTGAC------TCTC-TGCC----G-----CTCTT..................................................................................................................................................................................................................................................................................................................................................................................262012.9525900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000010000000000000000000000000000000000000000000000000000000000000000000000002400901371000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000001000000
.......................................ATAGACTTTATCCTATTATCTG-TA........................................................................................................................................................................................................................................................................................................................................................................................................................242012.4024800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000015068006158000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................T-TTA-------------------T-ATC--------GCGTCTATA----TCTTCTCGC...............................................................................................262010.252050000000000000000000000010000000000000011201010300000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000400060020010000000000000000000000000000000000000010604100000110400050207000000217012118019000000000100100000000000000000000000000000000000000000000000000000622140000000247000000000000000814000000
...........................................................TG-TAATCTTGAC------TCTC-TGCC----G-----CTC....................................................................................................................................................................................................................................................................................................................................................................................24208.9517900000000000000000000000200000000000000000010004051000000000000000000000000000000001707000000000000000000000000000000000000000000000002000000150000000002011000000000000000000000000000000000000000000300000000000000000030000015281005000000000000000000000000000000000000000000000000000000000000000001002020000000000000000001003300000000
...........................................................TG-TAATCTTGAC------TCTC-TGCC----G-----CTCTTA.................................................................................................................................................................................................................................................................................................................................................................................27208.051610000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000005538660000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TG-TAATCTTGAC------TCTC-TGCC----G-----CTCT...................................................................................................................................................................................................................................................................................................................................................................................25207.9515900000000000000000000002000000000000000200000000002200000000000000000000000000000000001000000000100000000000400000000000000000000000000000000061000045000044400000000000000000000000000000000060000000201152833040000000000000000000060000000021010000000000000000000000000000000000000000000000000000000020000001801000000000000000060000000
................................................................................................................................................................................................................................................................................................................................................................................TCTTCTCGCGAA--TCG-AGCCGT-----ACGA.......................................................................25206.8513700000000000000000000000000000000000001002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000200018601000204800000000000000000000000000000000000000010000000000000000000000005600000000000000001000000000000000000000000000000000000000000000000000000054000000000080000000000000015000000000
.................................................................................................................................................................................................CCTACTAACAGTAATATTTAATATAGT............................................................................................................................................................................................................................................................27206.7513500000000000000000000000000000000000000200000001000000000000000000000000000000000000000000000000000000000000020000000000000000000000000010000200120100000080000000000000000000000000000000000000020000000000000000000000000011158523100000000000000000000001000000000000000000000000000000000000002000000000000000000000000000000000200000000
.......................................ATAGACTTTATCCTATTATCTG-TAATCT....................................................................................................................................................................................................................................................................................................................................................................................................................28206.45129000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006840052000000000000000000000000000000000000000000000000000000000000000000301000000100000000000000000000000000
.......................................ATAGACTTTATCCTATTATCTG-TAA.......................................................................................................................................................................................................................................................................................................................................................................................................................25205.051010000000000000000000000000000000000000000000000000000000000000000000000000000000000200040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000236010100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................TTGAC------TCTC-TGCC----G-----CTCTTAAAG----------------------------------------------------------------------AT----CC................................................................................................................................................................................................................................................................................................2735.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000010221430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TGAC------TCTC-TGCC----G-----CTCTTAAAG----------------------------------------------------------------------AT----CC................................................................................................................................................................................................................................................................................................2635.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000064002210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TG-CATGACCCTT-ACAGAGTTTTATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................26204.759500000000000000000000000000000000000000000000005050030000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000301040000000000000000000000000000000001101000010000000051013100000100030000000000000000000000000000000000000000000000000000000000000000000100000310020000001140000000000000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCG-AGCCGT-----ACGATACACGGCAGCGC..........................................................26204.5591000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000010800201030000000000000000000000000000000000000000020300000000000202000327000003000600000000000000000000000000000000000000000000000000000000000000000000000201000000400000000000000000001000000
..........................................................................................................................................................................................................................................................................................................................................................C--------GCGTCTATA----TCTTCTCGCGAA--TCG-AGC...................................................................................28203.8577000000000000000000000000000000000000004000000030000100000010000000000000000000000001000000000000000000000000000000000000000000000000200000000000020000000400000000000000000000000000000000000000100000000000200000000000021711109800000000000000000000000000000000000000000000000000000000000004000002010000000000000000000000000100000000
.....................................................................................................................................................................................................................................T--------------------------------------TATATTCATTTTCTCG----------------TTCCTGT.....................................................................................................................................................................2463.67220000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000030221441000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................TTACAT--------------------------------------TATATTCATTTTCTCG----------------TTCC........................................................................................................................................................................2663.67220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000010141074000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TCTTGAC------TCTC-TGCC----G-----CTCTTAAA...............................................................................................................................................................................................................................................................................................................................................................................24203.607200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000001200132419000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCG-AGCCGT-----ACGATACACGGCAGC............................................................24203.5571000000000000000000000000000000000000000000000000000000000001000000000000000000000000020000000000000100000000000000000000000000000021000636000000000010000000000000000000000000000000000000000000001000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TT-TTA-------------------T-ATC--------GCGTCTATA----TCTTCTCGC...............................................................................................27203.4569000000000000000000000000000000000000000020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000100000000000000001010011126800000000000000000000000000000000000000000000000000000000000001000060200000001260000000000000002112000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGCCCC-TCGGTCGGTTGGGC........................................24203.406800000000000000000000000000000000000020001030200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600192303310000000000000000000000000000000000000000200000060000000000000000300100000000000000000000000000000000000000000000000000000000000000000000000000002000000040000000010000000003000000
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..............................................................................TCTC-TGCC----G-----CTCTTAAAG----------------------------------------------------------------------AT----CCTAA.............................................................................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTG-CATGATCCCT-ACAGAGTATTATGTTCTGACTATAATAGATTCTATCCTATTATCTC-TAATTCTGAC------TCTC-TGCC----G-----TTTTTAAAGCGATCAATACT------------------------------------------------AACGTACTTAACG----AATTCTTAGATATTACTACTA--------------------------------------------------------------GCATACATATATTTCCTCG----------------T-CCTTTACT--G--TCTT-CTA-------------------T-ATC--------GCGTCTA------TCTTCCCGCGAT--TCG-AGCCGT-----ACGATACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------GGCCGT---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................TACACGGCAGCGCCCC-TCGGTCGGT.............................................25206.701340000000006400700000
..............................................................................................................................................................................................................................................................................................................................................................................................TCG-AGCCGT-----ACGATACACGGCAGCGCC.........................................................27205.601120000112000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACACGGCAGCGCCCC-TCGGTCGGTT............................................26201.8537000000573014080000
...............................................................................................................................................................................................................................................................................................................................................................................................................GATACACGGCAGCGCCCC-TCGGTCGGT.............................................27201.2525000000910006000000
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----ACGATACACGGCAGCGCCCC-TCGGT.................................................26201.052100040042380000000
........................TATGTTCTGACTATAATAGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGATACACGGCAGCGCCCC-TCGGTCGGT.............................................28200.8016000000010410010000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACACGGCAGCGCCCC-TCGGTCGG..............................................24200.601200030000900000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCGGTTGGGCGGG-AGGTGT---------------GGC............26200.601200000050100060000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGCGCCCC-TCGGTCGGTTGG..........................................24200.601200000034120020000
............................................................................................................................................................................................................................................................................................................................CTT-CTA-------------------T-ATC--------GCGTCTA------TCT.....................................................................................................2020.50100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----ACGATACACGGCAGCGCCCC-TCGGTCGGT.............................................30200.5010000000100000000000
............CT-ACAGAGTATTATGTTCTGACTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGCGCCCC-TCGGTCGGT.............................................21200.45900000020007000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGATACACGGCAGCGCCCC-TCGGTCGG..............................................27200.35700020003200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCCC-TCGGTCGGTTGGGC........................................22200.35700000000007000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGT-----ACGATACACGGCAGCGCCCC-TCGGT.................................................28200.35700000022120000000
.............T-ACAGAGTATTATGTTCTGACTATAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................27200.35700000000007000000
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----ACGATACACGGCAGCGCCCC-TCGG..................................................25200.25500000000122000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGT-----ACGATACACGGCAGCGCCCC-T.....................................................24200.25500000041000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----ACGATACACGGCAGCGCCCC-TCG...................................................24200.25500000000005000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCGGTTGGGCGGG-AGGTGT---------------G..............24200.20400000000000040000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACGATACACGGCAGCGCCCC-TCGGTCGG..............................................28200.20400000000040000000
.................AGAGTATTATGTTCTGACTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20400000000004000000
.............T-ACAGAGTATTATGTTCTGACTATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.20400000000004000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACACGGCAGCGCCCC-TCGGTCGGTTGGG.........................................29200.20400000040000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGGG-AGGTGT---------------GGCCG..........19200.15300000000003000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCCC-TCGGTCGGTTGGGCGGG-....................................25200.15300000000003000000
................................................................................................................................................................................................................................................................................................................................................................................................................................C-TCGGTCGGTTGGGCGGG-AGGT................................22200.15300010000000002000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGT-----ACGATACACGGCAGCGCCCC-......................................................23200.15300000010110000000
....................GTATTATGTTCTGACTATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.15300300000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----ACGATACACGGCAGCGCCCC-TCGGTC................................................27200.15300000001000020000
.............T-ACAGAGTATTATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.15300000000003000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGGG-AGGTGT---------------GGCC...........18200.15300000000003000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGT-----ACGATACACGGCAGCGCCCC-TC....................................................25200.15300000001000020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCCC-TCGGTCGGTTGGGCGGG-AG..................................27200.15300000000003000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGATACACGGCAGCGCCCC-TCGGTT................................................25200.10200000000200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCGGTTGGGCGGG-AGGTGT---------------...............23200.10200000000000020000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGT-----ACGATACACGGCAGCGCCCC-TCGGTC................................................29200.10200000002000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCC-TCGGTCGGTTGGGC........................................20200.10200200000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCAGCGCCCC-TCGGTCGGTTGGGC........................................28200.10200100000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACGATACACGGCAGCGCCCC-TCGGTCGGT.............................................29200.10200000000020000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACACGGCAGCGCCCC-TCGGTC................................................22200.10200200000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCGGTTGGGCGGG-AGGTG...............................22200.10200000010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CC-TCGGTCGGTTGGGCGGG-AG..................................21200.10200000000001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTGGGCGGG-AGGTGT---------------GGCCGT---------25200.10200000000000020000
................................................................................................................................................................................................................................................................................................................................................................................................G-AGCCGT-----ACGATACACGGCAGCGCC.........................................................25200.10200000000002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACACGGCAGCGCCCC-TCGGTCGGTTG...........................................27200.10200010000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCAGCGCCCC-TCGGTCGGT.............................................23200.10200000000200000000
......................................................................................................................................................................................................................................................................................................................................................................................................GT-----ACGATACACGGCAGCGCCCC-TCGGT.................................................27200.10200000000010010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGCGCCCC-TCGGTCGG..............................................20200.10200010000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----ACGATACACGGCAGCGCCCC-T.....................................................22200.10200000000000020000
..............................................................................................................................................................................................................................................................................................................................................................................................TCG-AGCCGT-----ACGATACACGGCAGCGCCC........................................................28200.10200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGT-----ACGATACACGGCAGCGCCCC-TCG...................................................26200.10200000000011000000
..........................TGTTCTGACTATAATAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10200000020000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACGATACACGGCAGCGCCCC-TCGGTC................................................26200.10200010000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----ACGATACACGGCAGCGCCCC-TCGGAA................................................27200.05100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGCCCC-TCGGTCGGTTGGGC........................................23200.05100000000001000000
........................TATGTTCTGACTATAATAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----ACGATACACGGCAGCGCCCC-......................................................21200.05100000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCCC-TCGGTCGGTTGGG.........................................21200.05100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCAGCGCCCC-TCGGTCGGTTGGGA........................................27200.05100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCGCCCC-TCGGTCGGTTGG..........................................23200.05100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTTGGGCGGG-AGGTGT---------------GC.............22200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGCCCC-TCGGTCGGTTG...........................................21200.05100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCAGCGCCCC-TCGGTCGGTT............................................23200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACACGGCAGCGCCCC-TCGGTCGGG.............................................25200.05100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCAGCGCCCC-TCGGTCGGTTGGGC........................................27200.05100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-A...................................34200.05100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CC-TCGGTCGGTTGGGCGGG-A...................................20200.05100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCGCCCC-TCGGTCGGTT............................................21200.05100000000010000000
...............ACAGAGTATTATGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
.............T-ACAGAGTATTATGTTCTGACTATAA................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................CG-AGCCGT-----ACGATACACGGCAGCGCC.........................................................26200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTTGGGCGGG-AGGTGT---------------GGC............22200.05100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCG-AGCCGT-----ACGATACACGGC...............................................................21200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGCGCCCC-TCGGTCGGTTG...........................................23200.05100000000000100000
.....................TATTATGTTCTGACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGCGCCCC-TCGGTCGGTTGGG.........................................25200.05100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCC-TCGGTCGGTTGGGCGGG-AG..................................22200.05100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................GT-----ACGATACACGGCAGCGCCCC-TC....................................................24200.05100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCCCC-TCGGTCGGTTGGGCGGG-....................................22200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCG-AGCCGT-----ACGATACACGGCAGC............................................................24200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCAGCGCCCC-TCGGTCGGTTGGG.........................................27200.05100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----ACGATACACGGCAGCGCCCC-TCGGTCGG..............................................29200.05100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------G..............27200.05100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GATACACGGCAGCGCCCC-TCGGTCGG..............................................26200.05100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGCGCCCC-TCGGTCGGTTGGGCGG......................................28200.05100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCG-AGCCGT-----ACGATACACGGCAGCGCCCC-......................................................29200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGATACACGGCAGCGCCCC-TCGGT.................................................24200.05100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTTGGGCGGG-AGGTGT---------------GGCCG..........25200.05100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACACGGCAGCGCCCC-TCGGT.................................................21200.05100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGT-----ACGATACACGGCAGCGCCCC-TCGG..................................................27200.05100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCCCC-TCGGTCGGTTGGGCGG......................................21200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................GT-----ACGATACACGGCAGCGCCCC-TCGG..................................................26200.05100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGATACACGGCAGCGCCCC-TCGGTCGGTA............................................29200.05100000001000000000
..................GAGTATTATGTTCTGACTATAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCCC-TCGGTCGGTTGGGCGGG-AGG.................................28200.05100000000001000000
........................TATGTTCTGACTATAATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACACGGCAGCGCCCC-TCGGTCGGTAA...........................................27200.05100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CC-TCGGTCGGTTGGGCGGG-AGGTG...............................24200.05100000000000010000
.............T-ACAGAGTATTATGTTCTGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
droSec2
TTG-CATGACCCTT-ACATAGTTTTATGTTCTGACTATAATAGACTTTATCCTATTATCTG-TAATCTTGAC------TCTC-TGCC----G-----CTATTAAAT-ATTT------------------------------------------------------AACATAGTTA-----------------------------------------------TTCCACATTATCTATTT--CTA---TTT------------CTA---TTTCTATTCTTTCTAT----------------TTTCTATTCT--A--TTTT-TTA-------------------T-ATC--------GCGTCTATA----TCTTCTCGCGAA--TCG-AGCCGT-----ACGATACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------GGCCGTGGGA----CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................CTATA----TCTTCTCGCGAA--TCG-AGCC..................................................................................24201.002020000
..........................................................................................................................................................................................................................................................................................................................................................................TA----TCTTCTCGCGAA--TCG-AGCCGT-----ACGA.......................................................................27200.651313000
......................................................................................................................................................................................................................................................................................................................................................................TCTATA----TCTTCTCGCGAA--TCG-AGC...................................................................................24200.4088000
.......................................................................................................................................................................................................................................................................................................................................................................CTATA----TCTTCTCGCGAA--TCG-AGC...................................................................................23200.2550050
..................................................................CTTGAC------TCTC-TGCC----G-----CTATTAAA...............................................................................................................................................................................................................................................................................................................................................................................23200.1022000
.............................TCTGACTATAATAGACTTTATCCTATT................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1022000
..........................................................................................................................................................................................................................................................................................................................................................................TA----TCTTCTCGCGAA--TCG-AGCC..................................................................................21200.1022000
...............................TGACTATAATAGACTTTATCCTATTA...............................................................................................................................................................................................................................................................................................................................................................................................................................26200.0511000
...........................................................................................................ATTT------------------------------------------------------AACATAGTTA-----------------------------------------------TTCCA.....................................................................................................................................................................................................................................................19200.0511000
.......................................................................................................................................................................................................................................................................................................................................................................CTATA----TCTTCTCGCGAA--TCG-AGCCGT-----AC.........................................................................28200.0511000
.....................................................................................................................................................................................................................................................................................................................T--A--TTTT-TTA-------------------T-ATC--------GCGTCTAT.............................................................................................................21200.0511000
................................GACTATAATAGACTTTATCCTATTATC.............................................................................................................................................................................................................................................................................................................................................................................................................................27200.0511000
......................................................TTATCTG-TAATCTTGAC------TCTC-TGC..................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
droYak3
TTG-CATGATCCCT-ACAGAGTATTATGTTCTGACTATAATAGATTCTATCCTATTATCTC-TAATTCTCAC------TCTC-TGCC----G-----TTTTTAAAGCGATCAATACT------------------------------------------------AACATACTTAACG----AATTCTTAGATATTACTACTA--------------------------------------------------------------GCATACATATATTTCCTCG----------------T-CCTTTACT--G--TCTT-CTA-------------------T-ATC--------GCGTCTA------TCTTCCCGCGAT--TCG-AGCCGT-----ACGATACACGGCAGCGCCCC-TCGGTCGGTTGGGCGGG-AGGTGT---------------GGCCGTGGGA----CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................TTATCTC-TAATTCTCAC------TCTC-TGCC----G-----T......................................................................................................................................................................................................................................................................................................................................................................................2750.20101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----ACGATACACGGCAGCGCCCC-TCGGT.................................................26200.15300000000003
......................................................................................................................................................................................................................................................................................................................................................................................CGCGAT--TCG-AGCCGT-----ACGATACACGG................................................................26200.10202000000000
..................................................................................................................ACT------------------------------------------------AACATACTTAACG----AATTCTTAG.........................................................................................................................................................................................................................................................................................25200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGCGGG-AGGTGT---------------GGCC...........20200.05100000100000
...............................................................................................................AATACT------------------------------------------------AACATACTTAACG----AATTCTTAGA........................................................................................................................................................................................................................................................................................29200.05101000000000
.................................................................................................................TACT------------------------------------------------AACATACTTAACG----AATTCTTAGA........................................................................................................................................................................................................................................................................................27200.05101000000000
..................................................................................................................................................................................................................................................................................................................TACT--G--TCTT-CTA-------------------T-ATC--------GCGTCTA------TC......................................................................................................25200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGCCCC-TCGGTCGGTTGGG.........................................22200.05100000010000
......................................................................................................................................................................................................................................................................................................................................................................TCTA------TCTTCCCGCGAT--TCG-AGCCGT-----A..........................................................................26200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CCCC-TCGGTCGGTTGGGCGGG-T...................................22200.05100000100000
.............................TCTGACTATAATAGATTCTATCCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
......................................................................................................AAAGCGATCAATACT------------------------------------------------AACATACTT..........................................................................................................................................................................................................................................................................................................24200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................TA------TCTTCCCGCGAT--TCG-AGCC..................................................................................21200.05100000010000
droEre2
TTG-CAAGAACGCT-ACAGAGTATTATGTTCTGACTATAATATACTTTATCCTATTATCTC-TAATCCTGAC------TCTC-TGCC----G-----CTCTTAAAGCGATCAATACT------------------------------------------------AACTGTTTTAACA----CATAATTAGATCTTA--------------------------------------------------CTAA------------TA---TTTTCATATTTCCTCG----------------TTTTTTTGCT--G--TTCT-CTA-------------------T-ATC--------GT--CTATATCTATATTCACGCGAT--TCG-AGCCGT-----ACGATACATGGCAACGCCCC-TCGATCGGTTGGGGAGG-AGGA---CTCGT---CGG-GAGGCCGTGGGA----CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
TTG-AATGAACCGT-TTGGGGTCTTATGCTCGGATTATAATTCCCTCTACCATATTTTATC-CACCACTAAT------TCTC-TTCC----T-----CTTAATAAATTACTTATCCT------CACACACCTTGCATGCTTAGTTCTCCTAGTAAGTTTAGTGCTAATTT------------------------------------------------------------------------------------------------------------TCCTCGTATATACATA---A-------------------------GTCTAACAGCTATCTTTC----CTGCATGTTCGCGTTC---------GGTTCGGTTA--ACG-CGTCGC-----GCGTCATGCGGCAGCACCCC-TCGGTCGGTTGGGAGGG-AGGAGGGCT-GT---GCT-T-TG-CCTGGGA----TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................TCCCTCTACCATATTTTATC-CACCAC....................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020200000000
............GT-TTGGGGTCTTATGCTCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..........CCGT-TTGGGGTCTTATGCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............GT-TTGGGGTCTTATGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
...........................................CCTCTACCATATTTTATC-CACCACT...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
........AACCGT-TTGGGGTCTTATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
...........CGT-TTGGGGTCTTATGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
...............TTGGGGTCTTATGCTCGGATTATAA................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAGGG-AGGAGGGCT-G.........................1820.5010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGAGGG-AGGAGGGCT-..........................1820.5010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CCCC-TCGGTCGGTTGGGA........................................1830.3310100000000
..............................................................................................................................................................................................................................................................................................................................................................TGTTCGCGTTC---------GGTTCGGT..............................................................................................1930.3310000100000
.......................................................................................................................................................................................................................................................................................................................................................................TC---------GGTTCGGTTA--ACG-CGTCGC-----GCGTCA.....................................................................2740.2510100000000
.................................................................................................................................................................................................................................................................................................................................................TTTC----CTGCATGTTCGCGTTC---------GG....................................................................................................2290.2220200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCACCCC-TCGGTCGGTTGGG.........................................2170.1410000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCAGCACCCC-TCGGTCGG..............................................2280.1310100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCAGCACCCC-TCGGTCGG..............................................2180.1310100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCAGCACCCC-TCGGTCGGTA............................................2480.1310100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCACCCC-TCGGTCGGTTGG..........................................2080.1310100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCAGCACCCC-TCGGTCGGT.............................................2380.1310100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCCC-TCGGTCGGTTGG..........................................2180.1310100000000
.........................................................................................................................................................................................................................................................................................................................................................CTGCATGTTCGCGTTC---------GGTTCG................................................................................................2290.1110100000000
.................................................................................................................................................................................................................................................................................................................................................TTTC----CTGCATGTTCGCGTTC---------GGTT..................................................................................................2490.1110100000000
.................................................................................................................................................................................................................................................................................................................................................TTTC----CTGCATGTTCGCGTTC---------GGT...................................................................................................2390.1110100000000
..............................................................................................................................................................................................................................................................................................................................................ATCTTTC----CTGCATGTTCGCGT.................................................................................................................21180.0610000010000
...........................GCTCGGATTATAATTCCCTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000010
.........................ATGCTCGGATTATAATTCCCTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
....................GTCTTATGCTCGGATTATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000010
........................................................................................................................................................TAAGTTTAGTGCTAATTT------------------------------------------------------------------------------------------------------------TCCTCG............................................................................................................................................................................................24200.0510000001000
.........................ATGCTCGGATTATAATTCCCTCTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
..............................................................CACCACTAAT------TCTC-TTCC----T-----C......................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000000
droPer2
TTG-GATGAACCGT-TTAGGGTCTTATGCTCGGCCTATAATTCCCTCTACCAGACTATATC-CACCTCTAAT------TCCC-TGCC----T-----CTTATTAAATTACTAATACT------------------------------------------------CACATATGTACCTGTCTCGTAATTAG----TAATTGTA--------------------------------------------GTT------------GTA---GTT---T----------------------A-------------------------GTCTAACAGCTGTCTTTCCTATTC--------GCGTTC---------GGCTCGGTTA--ACG-CGCCAC-----GCGTCATGCGGCAGCGCTCC-TCGGTCGGTTGGACGGC-AGGAGGGCA-TC---------C-GCCTGGGA----TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......TGAACCGT-TTAGGGTCTTATGCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102020000
droWil2
TTG-CATGAACCTT-TTCGAGTCCTATGTTCTGATTACAATCTTCTGTACCC-GTAATCAG-ATCAGAAGCC------TCTC-TTTT----C-----CTTGTGAAAACTTCTATTTT------------------------------------------------AGCACATTTAGCT----CGTAATTAGCTGTAGTTAAT----------------------------------------------------------------CATATTTTTAATTGATTG----------------T-CC------------GTT-T---------------------TATTT--------GTATTT--------GTCCACGCGA---TCG-TGCCGT-----CCGATATGCGGCTGCGCCCC-ACGGTCGGTCGGGCGGG-AGGTGGACA-GC---GCT-C-TG-CTT-GGG----CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................TCCACGCGA---TCG-TGCCGT-----CCGATA.....................................................................24200.501008020
.................................................CCC-GTAATCAG-ATCAGAAGCC------TCTC-T....................................................................................................................................................................................................................................................................................................................................................................................................26200.40800080
.................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGGCTGCGCCCC-ACGGTCGG..............................................24200.35705020
.........................................................................................................................................................................................................................................................................................................................................................TT--------GTATTT--------GTCCACGCGA---TCG-TGCCG.................................................................................26200.35707000
.................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGGCTGCGCCCC-ACGGTCGGTCG...........................................27200.35700070
........................................................................................................................................................................................................................................................................................................................................................................T--------GTCCACGCGA---TCG-TGCCGT-----CCGA.......................................................................24200.30606000
.....................TCCTATGTTCTGATTACAATCTTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.25505000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AGGTGGACA-GC---GCT-C-TG-CTT-GGG----C25200.25505000
......................................................................................................................................................................................................................................................................................................................................................TATTT--------GTATTT--------GTCCACGCGA---TCG-......................................................................................24200.20402020
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----CCGATATGCGGCTGCGCCCC-ACGG..................................................25200.20404000
...............TTCGAGTCCTATGTTCTGATTACAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................27200.15303000
...............TTCGAGTCCTATGTTCTGATTACAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15300030
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----CCGATATGCGGCTGCGCCCC-ACGGTCG...............................................28200.15300030
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCGGGCGGG-AGGTGGACA-GC---GC...................26200.15302010
.................................................CCC-GTAATCAG-ATCAGAAGCC------TCTC-.....................................................................................................................................................................................................................................................................................................................................................................................................25200.15303000
........................................................................................................................................................................................................................................................................................................................................................................T--------GTCCACGCGA---TCG-TGCCGT-----CCGAT......................................................................25200.15300030
......................................................TAATCAG-ATCAGAAGCC------TCTC-TTTT----.............................................................................................................................................................................................................................................................................................................................................................................................2580.13100010
...................................................................................................................TT------------------------------------------------AGCACATTTAGCT----CGTAATTAGCTG......................................................................................................................................................................................................................................................................................27200.10201010
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCTGCGCCCC-ACGGTCGGTCGGG.........................................27200.10202000
.......GAACCTT-TTCGAGTCCTATGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10202000
..........................................................................................................................................................................................................................................................................................................................................................T--------GTATTT--------GTCCACGCGA---TCG-TGCCG.................................................................................25200.10202000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCTGCGCCCC-ACGGTCGGTCGGG.........................................26200.10202000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGACA-GC---GCT-C-TG-CTT-GGG----C23200.10200020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AGGTGGACA-GC---GCT-C-TG-CTT-GG......23200.10202000
...............................................................................................................TATTTT------------------------------------------------AGCACATTTAGCT----CGTAAT............................................................................................................................................................................................................................................................................................25200.10200020
..................................................................................................................TTT------------------------------------------------AGCACATTTAGCT----CGTAATTAG.........................................................................................................................................................................................................................................................................................25200.10200020
..............................................................................................................................................................................................................................................................................................................................................................................................TCG-TGCCGT-----CCGATATGCGGCTGCGCC.........................................................27200.10200020
...................................................C-GTAATCAG-ATCAGAAGCC------TCTC-TT...................................................................................................................................................................................................................................................................................................................................................................................................25200.10200020
.TG-CATGAACCTT-TTCGAGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTGCGCCCC-ACGGTCGGT.............................................21200.10201001
...............................................................................................................................................................................................................................................................................................................................................................................................................................CC-ACGGTCGGTCGGGCGGG-AGG.................................22200.10202000
........................................................................................................................................................................................................................................................................................................................................................TTT--------GTATTT--------GTCCACGCGA---TCG-TGCCG.................................................................................27200.10200020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGG-AGGTGGACA-GC---GCT-C-TG-C...........24200.05100010
................TCGAGTCCTATGTTCTGATTACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGGCTGCGCCCC-ACGGTCGGTA............................................26200.05100010
.......GAACCTT-TTCGAGTCCTATGTTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGGCTGCGCCCC-ACGGT.................................................23200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................TCG-TGCCGT-----CCGATATGCGG................................................................20200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCTGCGCCCC-ACGGTCGGTCGGGC........................................28200.05101000
..................................................CC-GTAATCAG-ATCAGAAGCC------TCTC-TTT..................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................A---TCG-TGCCGT-----CCGATATGCGGCTGCGC..........................................................27200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................TGCCGT-----CCGATATGCGGCTGCGCC.........................................................24200.05100010
..................................................................................................................TTT------------------------------------------------AGCACATTTAGCT----CGTAATTAGC........................................................................................................................................................................................................................................................................................26200.05101000
.TG-CATGAACCTT-TTCGAGTCCTATGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
............................................................................................................................................................................................................................................................................................................................................................................................................................GCCCC-ACGGTCGGTCGGGCGG......................................21200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGACA-GC---GCT-C-TG-CTT-GG......22200.05100010
.........................................................................................................................................................................................AATTAGCTGTAGTTAAT----------------------------------------------------------------CATA..........................................................................................................................................................................................................21200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGGCTGCGCCCC-ACG...................................................19200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGG-AGGTGGACA-GC---GCT-C-TG-CTT-G.......27200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................TGCCGT-----CCGATATGCGGCTGCGCCC........................................................25200.05100010
......................................................................................................................................................................................................................................................................................................................................................................................................GT-----CCGATATGCGGCTGCGCCC........................................................21200.05101000
..G-CATGAACCTT-TTCGAGTCCTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGCTGCGCCCC-ACGGTCGGTCG...........................................26200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................C-ACGGTCGGTCGGGCGGG-AGGTGGAA............................26200.05100010
......TGAACCTT-TTCGAGTCCTATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
.......................................................................................................................................................................................................................................................................................................................................................ATTT--------GTATTT--------GTCCACGCGA---TCG-TGC...................................................................................26200.05100010
.....ATGAACCTT-TTCGAGTCCTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
......................................................................................................................................................................................................................................................................................................................................................TATTT--------GTATTT--------GTCCACGCGA---TCG-TG....................................................................................26200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-AGGTGGACA-GC---GCT-C-TG-CTT-GGG----C26200.05101000
.............................................................................................................................................................................................................................................................................................................................TT-T---------------------TATTT--------GTATTT--------GTCCACGCGA---TCG-......................................................................................27200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................T-----CCGATATGCGGCTGCGCCCC-ACGGTA................................................27200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCCCC-ACGGTCGGTCGGGCGGG-AGGTGG..............................28200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCGGTCGGGCGGG-AGGTGGAC............................24200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCGATATGCGGCTGCGCCC........................................................19200.05101000
.........................................................TCAG-ATCAGAAGCC------TCTC-TTT..................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
...................................................................................................................................................................................................................................................................................................................................................................................CCACGCGA---TCG-TGCCGT-----CCGA.......................................................................21200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCCCC-ACGGTCGGTCGGG.........................................21200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................CGCGA---TCG-TGCCGT-----CCGATATGCGG................................................................25200.05101000
.......................................................AATCAG-ATCAGAAGCC------TCTC-T....................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
...............................................................................................................TATTTT------------------------------------------------AGCACATTTAGCT----CGTAATTAGC........................................................................................................................................................................................................................................................................................29200.05101000
...............................................................................................................................................................................GCT----CGTAATTAGCTGTAGTTAAT----------------------------------------------------------------CA............................................................................................................................................................................................................25200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCTGCGCCCC-ACGGTCGGTC............................................24200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................CGT-----CCGATATGCGGCTGCGCCC........................................................22200.05101000
........................................................................................................AAACTTCTATTTT------------------------------------------------AGCACATT...........................................................................................................................................................................................................................................................................................................21200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................GT-----CCGATATGCGGCTGCGCCCC-A.....................................................23200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................CCACGCGA---TCG-TGCCGT-----CCGATATGC..................................................................26200.05100010
......................................................................................................................................................................................................................................................................................................................................................TATTT--------GTATTT--------GTCCACGCGA---..........................................................................................21200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGATATGCGGCTGCGCCCC-ACGGTC................................................25200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGGCGGG-AGGTGGACA-..........................19200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTCGGGCGGG-AGGTGGAC............................21200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................................TCG-TGCCGT-----CCGATATGCGGCTGCG...........................................................25200.05100010
............................................................................................................................................................................................TAGCTGTAGTTAAT----------------------------------------------------------------CATATTTTTAATT.................................................................................................................................................................................................27200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGCGGG-AGGTGGACA-GC---GC...................22200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCCCC-ACGGTCGGTCGGGCGGG-AG..................................27200.05101000
..................................................................................................................TTT------------------------------------------------AGCACATTTAGCT----CGTAATTAGCTG......................................................................................................................................................................................................................................................................................28200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-AGGTGGACA-GC---GCT-C-TG-CTT-GG......24200.05101000
..................................................CC-GTAATCAG-ATCAGAAGCC------T.........................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
.....................................................................................................................................................................................................................................................................................................................................................................................................CGT-----CCGATATGCGGCTGCGCCCC-ACGG..................................................27200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................TGCCGT-----CCGATATGCGGCTGCGC..........................................................23200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GGG-AGGTGGACA-GC---GCT-C-TG-CTT-G.......24200.05101000
.....................................................................................................................................................................AGCACATTTAGCT----CGTAATTAGCT.......................................................................................................................................................................................................................................................................................24200.05101000
..........................................................................................................................................................................................ATTAGCTGTAGTTAAT----------------------------------------------------------------CATA..........................................................................................................................................................................................................20200.05101000
..........CCTT-TTCGAGTCCTATGTTCTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
........................................................................................................................................................................................................................................................................................................................................................................T--------GTCCACGCGA---TCG-TGCCGT-----CCG........................................................................23200.05101000
....................GTCCTATGTTCTGATTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
.....................TCCTATGTTCTGATTACAATCTTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
......................................................TAATCAG-ATCAGAAGCC------TCTC-TT...................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100
..................................................................................................................................................................................................................................................................................................................................................................................TCCACGCGA---TCG-TGCCGT-----CCGATATG...................................................................26200.05100010
............................................................................................................................................................................TTAGCT----CGTAATTAGCTGTAGTTAA...............................................................................................................................................................................................................................................................................25200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGGCTGCGCCCC-ACGGTCGGTT............................................26200.05101000
................................................................................................................................................................................CT----CGTAATTAGCTGTAGTTAAT----------------------------------------------------------------CATA..........................................................................................................................................................................................................26200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................CGA---TCG-TGCCGT-----CCGATATGCGGCTG.............................................................26200.05101000
............TT-TTCGAGTCCTATGTTCTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
.......................................................................................................................................................................CACATTTAGCT----CGTAATTAGCTGTAGT..................................................................................................................................................................................................................................................................................27200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACA-GC---GCT-C-TG-CTT-GGG----C21200.05100100
........................TATGTTCTGATTACAATCTTCTGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
droVir3
TTG-CATTAACCGT-GCAGTTTTCTCTGTGATGACTATAACTAGCATTACAGGGTATTCCG-CTCGGAGTCT------ACTC-TTCC----T-----CTTATAAAGTCTTCTATTCT------------------------------------------------AAACTATTTACCA----AGAA---------------------------------------------------GATATTCTTATTATTATTTGGAATTGTA---TTTGTAT---------------------------ACATAGTT--G--TAGT-TTG-------------------T-ATC--------GTTTTTT------T-TTTTACTATT--TCG-TATCGT-----ACGTTACACCACTGCGCCCC-TCGGTTGGTTGGGCGGG-GGGTGGGAT-GCAGTACG-T-TGCATCGGGA----TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................AACTAGCATTACAGGGTATTCCG-CT........................................................................................................................................................................................................................................................................................................................................................................................................................2512.002001000000000100000000000000000000000000000000000000000000000000
.....................................................................................................TAAAGTCTTCTATTCT------------------------------------------------AAACTATT...........................................................................................................................................................................................................................................................................................................24170.122001010000000000000000000000000000000000000000000000000000000000
.....................................................................................................TAAAGTCTTCTATTCT------------------------------------------------AAACTATTTA.........................................................................................................................................................................................................................................................................................................26140.071001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTG-CATAGTGCGT-TTTATGTTCTTTGTGTTAACTTTAATAAATATTATCACGTATTTTC-CTTAGAGCTC------TCTC-TTCC----T-----AAATTAAAATCTTTACTATT------------------------------------------------AGCTTATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................TTTC-CTTAGAGCTC------TCTC-TTCC----T-----.......................................................................................................................................................................................................................................................................................................................................................................................23200.5010700021
.........................................................TTTC-CTTAGAGCTC------TCTC-TTCC----.............................................................................................................................................................................................................................................................................................................................................................................................22200.5010800020
.........................................................TTTC-CTTAGAGCTC------TCTC-TTCC----T-----A......................................................................................................................................................................................................................................................................................................................................................................................24200.204100021
...........................................................TC-CTTAGAGCTC------TCTC-TTCC----T-----.......................................................................................................................................................................................................................................................................................................................................................................................21200.102100001
.........................................................TTTC-CTTAGAGCTC------TCTC-TTCC----T-----AAA....................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
.........................................................TTTC-CTTAGAGCTC------TCTC-TTCC----C-----.......................................................................................................................................................................................................................................................................................................................................................................................23200.102000020
.........................................................TTTC-CTTAGAGCTC------TCTC-TTCC----A-----.......................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
..........................................................TTC-CTTAGAGCTC------TCTC-TTCC----T-----.......................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.........................................................TTTC-CTTAGAGCTC------TCTC-TTC..................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
ATG-CATAATCCTT-TTAGGATCTTATGCACAAATTATAATATGCGTTTTCCATTAATAAG-TTGTGCTTCT------TCTA-TTTC----T-----TTTATTATATCTGGTGTGTC------------------------------------------------AAGTCGATTAGTA----AGTA---------------------------------------------------------------------------------------------------------------A-------------------------GTCTA------------------------------TCTA------GTTATTCGCGATCTTCGTAATCGC-----ACGTTATGCGGC-GCACCCC-TCGGTCGGTTGGGTGGG-AGGTGAGTC----------------GTA--------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:14 PM