dan_759

exon [dana_GLEANR_3571:3]; exon [dana_GLEANR_3571:2]; CDS [Dana\GF20627-cds]; CDS [Dana\GF20627-cds]; intron [Dana\GF20627-in]

##################################################------------------------------------------------------------################################################## TATGTAATTTTCGAATTTTAAAAAAACCATACCATGAGATTCCATTTGAGGTAAGTTTATCCAATGTAAATTTATCTTTGGATACAAATTTAAATGATTTCTAATTTTAGATTGAATTGGTTAATAACCTTGGAATTTTGAAAGCAAGCCGCATGTTAAA ************************************************.(((((((((((((.(((....)))..)))))))..))))))..................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V105 male body	V106 head	V055 head	V039 embryo
...................................................................AAATTTATCTTTGGATACCA.........................................................................	20	1	1	2846.00	2846	2128	587	55	33	17	26
.................................................................ATAAATTTATCTTTGGATACCA.........................................................................	22	2	1	1752.00	1752	1396	211	97	21	15	12
....................................................................AATTTATCTTTGGATACCA.........................................................................	19	1	1	1470.00	1470	854	480	46	35	38	17
..................................................................TAAATTTATCTTTGGATACCA.........................................................................	21	1	1	1137.00	1137	880	146	60	27	14	10
................................................................GATAAATTTATCTTTGGATACCA.........................................................................	23	3	2	858.00	1716	1340	169	87	78	21	21
.....................................................................ATTTATCTTTGGATACCA.........................................................................	18	1	1	382.00	382	283	73	7	4	13	2
...............................................................AGATAAATTTATCTTTGGATACCA.........................................................................	24	3	2	245.50	491	431	57	0	3	0	0
...................................................................AGATTTATCTTTGGATACCA.........................................................................	20	2	1	149.00	149	149	0	0	0	0	0
................................................................GGTAAATTTATCTTTGGATACCA.........................................................................	23	2	1	147.00	147	147	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACC..........................................................................	19	1	1	119.00	119	110	7	0	2	0	0
.................................................................AGAAATTTATCTTTGGATACCA.........................................................................	22	3	2	111.50	223	223	0	0	0	0	0
...............................................................ATATAAATTTATCTTTGGATACCA.........................................................................	24	2	1	104.00	104	104	0	0	0	0	0
..................................................................TAAATTTATCTTTGGATACC..........................................................................	20	1	1	86.00	86	83	1	1	0	1	0
..................................................................TGAATTTATCTTTGGATACCA.........................................................................	21	2	1	50.00	50	50	0	0	0	0	0
...................................................................AAATTTATCTTTGGATAC...........................................................................	18	0	1	47.00	47	46	1	0	0	0	0
.................................................................ATAAATTTATCTTTGGATACC..........................................................................	21	2	2	46.00	92	91	1	0	0	0	0
....................................................................AATTTATCTTTGGATACC..........................................................................	18	1	1	44.00	44	42	1	0	0	0	1
..................................................................TAAATTTATCTTTGGATAC...........................................................................	19	0	1	36.00	36	35	0	0	1	0	0
..................................................................TAATTTTATCTTTGGATACCA.........................................................................	21	2	1	33.00	33	33	0	0	0	0	0
..................................................................TAAATTTATCTTTGAATACCA.........................................................................	21	2	1	24.00	24	12	9	0	0	0	3
................................................................GTTAAATTTATCTTTGGATACCA.........................................................................	23	3	1	21.00	21	21	0	0	0	0	0
.................................................................TTAAATTTATCTTTGGATACCA.........................................................................	22	2	1	21.00	21	20	1	0	0	0	0
.................................................................ATAAATTTATCTTTGGATAC...........................................................................	20	1	2	13.00	26	26	0	0	0	0	0
..................................................................TAAATTTATCTTTGGATA............................................................................	18	0	2	12.50	25	16	1	1	3	1	3
...................................................................AAACTTATCTTTGGATACCA.........................................................................	20	2	2	12.00	24	24	0	0	0	0	0
...................................................................ATATTTATCTTTGGATACCA.........................................................................	20	2	2	10.50	21	21	0	0	0	0	0
...................................................................AAAGTTATCTTTGGATACCA.........................................................................	20	2	3	9.67	29	29	0	0	0	0	0
...................................................................AAATTTATCTTTGAATACCA.........................................................................	20	2	3	9.67	29	16	12	0	0	0	1
...................................................................AACTTTATCTTTGGATACCA.........................................................................	20	2	1	9.00	9	9	0	0	0	0	0
...............................................................ATATAAATTTATCTTTGGATACC..........................................................................	23	2	1	8.00	8	8	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACCCA........................................................................	21	2	1	8.00	8	8	0	0	0	0	0
..................................................................TAAATTTAGCTTTGGATACCA.........................................................................	21	2	1	8.00	8	1	7	0	0	0	0
....................................................................AGTTTATCTTTGGATACCA.........................................................................	19	2	4	7.75	31	29	0	0	0	2	0
.................................................................ATATATTTATCTTTGGATACCA.........................................................................	22	3	6	7.67	46	46	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACTA.........................................................................	20	1	1	7.00	7	7	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACCAC........................................................................	21	2	1	7.00	7	6	1	0	0	0	0
................................................................CATAAATTTATCTTTGGATACCA.........................................................................	23	3	1	6.00	6	5	0	0	0	0	1
..................................................................TTAATTTATCTTTGGATACCA.........................................................................	21	2	1	6.00	6	6	0	0	0	0	0
.................................................................ATCAATTTATCTTTGGATACCA.........................................................................	22	3	1	5.00	5	5	0	0	0	0	0
...................................................................AAATTGATCTTTGGATACCA.........................................................................	20	2	1	5.00	5	5	0	0	0	0	0
................................................................TATAAATTTATCTTTGGATACCA.........................................................................	23	2	1	5.00	5	5	0	0	0	0	0
..................................................................CAAATTTATCTTTGGATACCA.........................................................................	21	2	1	5.00	5	4	1	0	0	0	0
................................................................GGTAAATTTATCTTTGGATACC..........................................................................	22	2	1	5.00	5	5	0	0	0	0	0
...................................................................TAATTTATCTTTGGATACCA.........................................................................	20	2	3	4.33	13	12	1	0	0	0	0
.................................................................GTAAATTTATCTTTGGATACCA.........................................................................	22	1	1	4.00	4	1	2	0	1	0	0
...............................................................AGCTAAATTTATCTTTGGATACCA.........................................................................	24	3	2	4.00	8	8	0	0	0	0	0
..................................................................TAAATTTCTCTTTGGATACCA.........................................................................	21	2	1	4.00	4	4	0	0	0	0	0
................................................................GGTAAATTTATCTTTGGATAC...........................................................................	21	1	1	4.00	4	4	0	0	0	0	0
....................................................................ATTTTATCTTTGGATACCA.........................................................................	19	2	3	3.00	9	9	0	0	0	0	0
...................................................................AAATTTAACTTTGGATACCA.........................................................................	20	2	1	3.00	3	3	0	0	0	0	0
.................................................................ATAAATTTATCTTTGGATACAA.........................................................................	22	1	1	3.00	3	0	0	3	0	0	0
..................................................................TAAATTTAACTTTGGATACCA.........................................................................	21	2	1	3.00	3	0	3	0	0	0	0
...................................................................AAATTTATCTTCGGATACCA.........................................................................	20	2	1	3.00	3	3	0	0	0	0	0
...............................................................ACATAAATTTATCTTTGGATACCA.........................................................................	24	3	1	3.00	3	3	0	0	0	0	0
.................................................................ATAAATTTGTCTTTGGATACCA.........................................................................	22	3	1	3.00	3	0	3	0	0	0	0
.................................................................ATAAATTTATCCTTGGATACCA.........................................................................	22	3	1	3.00	3	2	0	1	0	0	0
....................................................................AATTTATCTTTGGATACCAC........................................................................	20	2	1	3.00	3	3	0	0	0	0	0
...................................................................AAATTTATCCTTGGATACCA.........................................................................	20	2	2	3.00	6	6	0	0	0	0	0
...................................................................AAATGTATCTTTGGATACCA.........................................................................	20	2	1	3.00	3	2	0	0	0	1	0
...................................................................AAATTTATGTTTGGATACCA.........................................................................	20	2	8	2.88	23	0	23	0	0	0	0
.....................................................................ATTTATCTTTGGATACCAC........................................................................	19	2	4	2.50	10	10	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACCG.........................................................................	20	2	2	2.50	5	1	4	0	0	0	0
..................................................................AAAATTTATCTTTGGATACCA.........................................................................	21	2	2	2.50	5	3	2	0	0	0	0
....................................................................AATTTATCTTTGAATACCA.........................................................................	19	2	9	2.44	22	5	16	0	0	0	1
.................................................................ATAAATTTATCTTTGGATACCC.........................................................................	22	3	5	2.40	12	12	0	0	0	0	0
...................................................................AAATTTATATTTGGATACCA.........................................................................	20	2	6	2.33	14	7	6	1	0	0	0
....................................................................AATCTATCTTTGGATACCA.........................................................................	19	2	3	2.33	7	7	0	0	0	0	0
...................................................................AAATTTATCTTTGGATGCCA.........................................................................	20	2	1	2.00	2	2	0	0	0	0	0
.................................................................ATAAATTTATCTTTGGATACTA.........................................................................	22	2	1	2.00	2	0	0	2	0	0	0
................................................................GGTAAATTTATCTTTGGATA............................................................................	20	1	2	2.00	4	4	0	0	0	0	0
..................................................................TAAATTTATCTTTGGTTACCA.........................................................................	21	2	1	2.00	2	2	0	0	0	0	0
................................................................GGTAAATTTATCTTTGGATACCAC........................................................................	24	3	1	2.00	2	2	0	0	0	0	0
..................................................................TAAATTTATCTTTTGATACCA.........................................................................	21	2	1	2.00	2	1	0	0	0	1	0
....................................................................AATGTATCTTTGGATACCA.........................................................................	19	2	2	2.00	4	4	0	0	0	0	0
................................................................CGTAAATTTATCTTTGGATACCA.........................................................................	23	2	1	2.00	2	2	0	0	0	0	0
...................................................................AAATCTATCTTTGGATACCA.........................................................................	20	2	1	2.00	2	1	0	1	0	0	0
...............................................................ATATAAATTTCTCTTTGGATACCA.........................................................................	24	3	1	2.00	2	2	0	0	0	0	0
...................................................................AAATTTGTCTTTGGATACCA.........................................................................	20	2	2	2.00	4	3	0	1	0	0	0
..................................................................TAAATTTATCTTTGGATACTA.........................................................................	21	1	1	2.00	2	2	0	0	0	0	0
..................................................................TTAATTTATCTTTGGATACC..........................................................................	20	2	1	2.00	2	2	0	0	0	0	0
....................................................................AACTTATCTTTGGATACCA.........................................................................	19	2	6	2.00	12	12	0	0	0	0	0
...................................................................AAATTTATCTTTTGATACCA.........................................................................	20	2	2	2.00	4	0	0	2	0	0	2
...................................................................AAATTCATCTTTGGATACCA.........................................................................	20	2	1	2.00	2	1	0	0	0	0	1
...................................................................AAATTTATCTTAGGATACCA.........................................................................	20	2	1	2.00	2	0	0	2	0	0	0
...............................................................ATATAAATTTATCTTTGGATACCAC........................................................................	25	3	1	2.00	2	2	0	0	0	0	0
..................................................................TAAATTTACCTTTGGATACCA.........................................................................	21	2	1	2.00	2	2	0	0	0	0	0
..................................................................TAAATTTATCTTTGAATACC..........................................................................	20	2	4	2.00	8	7	1	0	0	0	0
.................................................................CTAAATTTATCTTTGGATACCA.........................................................................	22	2	1	2.00	2	2	0	0	0	0	0
..................................................................TAAATTTCTCTTTGGATACC..........................................................................	20	2	1	2.00	2	2	0	0	0	0	0
..................................................................TAAATTTATCTTTGGATACCAC........................................................................	22	2	1	2.00	2	2	0	0	0	0	0
..................................................................TAAATTTATCTTCGGATACCA.........................................................................	21	2	1	2.00	2	1	1	0	0	0	0
................................................................GGTAAATTTATCTTTGGAT.............................................................................	19	1	2	2.00	4	4	0	0	0	0	0
....................................................................GATTTATCTTTGGATACCA.........................................................................	19	2	3	2.00	6	3	2	0	1	0	0
..................................................................TAAATTTATCTTTGGATACCACC.......................................................................	23	3	3	1.67	5	5	0	0	0	0	0
.................................................................ATAAATTTATCTTTGAATACCA.........................................................................	22	3	11	1.64	18	13	4	1	0	0	0
.................................................................ATAAATTTATCTTTGGATACGA.........................................................................	22	2	2	1.50	3	2	0	1	0	0	0
..................................................................TAAATTTATCTTTGGATACCG.........................................................................	21	2	2	1.50	3	1	0	1	1	0	0
................................................................GATAAATTTATCTTTGGATACAA.........................................................................	23	2	2	1.50	3	1	1	0	1	0	0
...................................................................AGATTTATCTTTGGATAC...........................................................................	18	1	2	1.50	3	3	0	0	0	0	0
..................................................................TGAATTTATCTTTGGATACC..........................................................................	20	2	2	1.50	3	3	0	0	0	0	0
...................................................................AAATTTATCTTTGGAAACCA.........................................................................	20	2	5	1.40	7	4	2	1	0	0	0
...................................................................AGATTTATCTTTGGATACC..........................................................................	19	2	3	1.33	4	4	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACCC.........................................................................	20	2	3	1.33	4	3	0	0	0	0	1
.................................................................AGAAATTTATCTTTGGATACC..........................................................................	21	3	12	1.33	16	16	0	0	0	0	0
...................................................................AAATTTATCTTTGGCTACCA.........................................................................	20	2	3	1.33	4	4	0	0	0	0	0
...................................................................AAATTTATTTTTGGATACCA.........................................................................	20	2	7	1.29	9	3	6	0	0	0	0
...................................................................AAATTTATCTTTGGATACCACC.......................................................................	22	3	5	1.20	6	6	0	0	0	0	0
.................................................................AGAAATTTATCTTTGGATAC...........................................................................	20	2	5	1.20	6	6	0	0	0	0	0
.....................................................................ATCTATCTTTGGATACCA.........................................................................	18	2	7	1.14	8	8	0	0	0	0	0
................................................................TCTAATTTTATCTTTGGATACAA.........................................................................	23	2	1	1.00	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACAA.........................................................................	20	0	1	1.00	1	1	0	0	0	0	0
.................................................................ATAAATTTATCTTTGGATACCCA........................................................................	23	3	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTGATCTTTGGATACCA.........................................................................	21	2	1	1.00	1	1	0	0	0	0	0
...................................................................AAATTTATCTCTGGATACCA.........................................................................	20	2	2	1.00	2	0	0	2	0	0	0
..................................................................TAAATTTATCTTTGGATACA..........................................................................	20	0	1	1.00	1	1	0	0	0	0	0
...................................................................CAATTTATCTTTGGATACCA.........................................................................	20	2	3	1.00	3	2	1	0	0	0	0
..................................................................TAAATTTATCTTTGGATACCCA........................................................................	22	2	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGGTTACC..........................................................................	20	2	1	1.00	1	1	0	0	0	0	0
...............................................................ATATAAATTTATCTTAGGATACCA.........................................................................	24	3	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGGATACCC.........................................................................	21	2	1	1.00	1	0	0	1	0	0	0
...............................................................TTATAAATTTATCTTTGGATACCA.........................................................................	24	3	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGGAAAC...........................................................................	19	1	1	1.00	1	1	0	0	0	0	0
...............................................................ATCTAAATTTATCTTTGGATACCA.........................................................................	24	2	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGGATACAA.........................................................................	21	0	1	1.00	1	0	0	0	1	0	0
.................................................................ATAAAGTTATCTTTGGATACCA.........................................................................	22	3	3	1.00	3	3	0	0	0	0	0
.................................................................TTAAATTTATCTTTGGATACC..........................................................................	21	2	1	1.00	1	1	0	0	0	0	0
..................................................................TGAATTTATCTTTGGATAC...........................................................................	19	1	1	1.00	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACCAAC.......................................................................	22	2	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGGATACT..........................................................................	20	1	1	1.00	1	1	0	0	0	0	0
................................................................GGTAAATTTATCTTTGGATACAA.........................................................................	23	1	1	1.00	1	1	0	0	0	0	0
................................................................GGTAAATTTATCTTTGGATACTA.........................................................................	23	2	1	1.00	1	1	0	0	0	0	0
...............................................................AGTTAAATTTATCTTTGGATACCA.........................................................................	24	3	1	1.00	1	1	0	0	0	0	0
................................................................TATAAATTTATCTTTGGATAC...........................................................................	21	1	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGGAAACCA.........................................................................	21	2	2	1.00	2	1	1	0	0	0	0
..................................................................TAAATTTATCTTTGGATACCAG........................................................................	22	2	1	1.00	1	0	0	1	0	0	0
.....................................................................ATTTATCTTTGGATACAAC........................................................................	19	1	1	1.00	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACCAA........................................................................	21	1	1	1.00	1	1	0	0	0	0	0
....................................................................AATTTATCTTTGGATACAA.........................................................................	19	0	1	1.00	1	0	1	0	0	0	0
...............................................................ATCTAAATTTATCTTTGGA..............................................................................	19	1	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTCATCTTTGGATACCA.........................................................................	21	2	1	1.00	1	1	0	0	0	0	0
.................................................................ATAAATTTATCTTTGGATACCAG........................................................................	23	3	1	1.00	1	0	1	0	0	0	0
...............................................................ATCTAAATTTATCTTTTGATACCA.........................................................................	24	3	1	1.00	1	1	0	0	0	0	0
...............................................................ATACAAATTTATCTTTGGATACCA.........................................................................	24	3	1	1.00	1	1	0	0	0	0	0
...................................................................AAATTTACCTTTGGATACCA.........................................................................	20	2	3	1.00	3	3	0	0	0	0	0
..................................................................TAAATTTATCTTTGGATACCAA........................................................................	22	1	1	1.00	1	0	0	0	1	0	0
.................................................................ATAAATTTATCTTCGGATACCA.........................................................................	22	3	1	1.00	1	0	0	1	0	0	0
....................................................................AATTTATCTTTGGATACCATT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0
..................................................................GAAATTTATCTTTGGATACCA.........................................................................	21	2	1	1.00	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGGTACCA.........................................................................	20	2	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTAATCTTTGGATACCA.........................................................................	21	2	1	1.00	1	0	0	1	0	0	0
...................................................................AAATTTATCTTTGGATACCAG........................................................................	21	2	1	1.00	1	1	0	0	0	0	0
...................................................................AAATTTATCTTCGGATAC...........................................................................	18	1	1	1.00	1	1	0	0	0	0	0
...............................................................ATATAAATTTATCTTTGGATACCC.........................................................................	24	3	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGGATACCT.........................................................................	21	2	1	1.00	1	0	0	1	0	0	0
.................................................................ATAAATTTATCTTGGGATACCA.........................................................................	22	3	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................ATAACCTTGGAATTTTGAAAGCAAGCC..........	27	0	1	1.00	1	1	0	0	0	0	0
................................................................GGTTAATTTATCTTTGGATACCA.........................................................................	23	3	2	1.00	2	2	0	0	0	0	0
.................................................................ATAAATTTATCTTTGGATACCAC........................................................................	23	3	1	1.00	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGGACACCA.........................................................................	21	2	2	1.00	2	1	0	0	0	0	1
...................................................................GAATTTATCTTTGGATACCA.........................................................................	20	2	1	1.00	1	0	0	1	0	0	0
..................................................................TAACTTTATCTTTGGATACCA.........................................................................	21	2	1	1.00	1	1	0	0	0	0	0
..............................................................GATATAAATTTATCTTTGGATACCA.........................................................................	25	3	1	1.00	1	0	1	0	0	0	0
.................................................................GTAAATTTATCTTTGGATACC..........................................................................	21	1	1	1.00	1	0	1	0	0	0	0
....................................................................AATTTATCTTTGGATACCAG........................................................................	20	2	1	1.00	1	0	1	0	0	0	0
.................................................................ATAAATTTATCTTTGGACACCA.........................................................................	22	3	2	1.00	2	1	1	0	0	0	0
...................................................................AAATTTATCTTTGGATACAAAA.......................................................................	22	1	1	1.00	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGAATACC..........................................................................	19	2	13	0.77	10	10	0	0	0	0	0
...................................................................AAATTTATCTTTAGATACCA.........................................................................	20	2	4	0.75	3	1	1	1	0	0	0
..................................................................TAATTTTATCTTTGGATACC..........................................................................	20	2	4	0.75	3	3	0	0	0	0	0
..................................................................TAAATTTATCTTTGGAACCA..........................................................................	20	2	3	0.67	2	2	0	0	0	0	0
...............................................................AGCTAAATTTATCTTTGGATACC..........................................................................	23	3	3	0.67	2	2	0	0	0	0	0
...................................................................AGATTTATCTTTGGATACTA.........................................................................	20	2	3	0.67	2	2	0	0	0	0	0
...................................................................AAATTTATCTTTGGACACCA.........................................................................	20	2	3	0.67	2	1	1	0	0	0	0
..................................................................TAAATTTATTTTTGGATACCA.........................................................................	21	2	2	0.50	1	1	0	0	0	0	0
..................................................................TAAATTTATATTTGGATACCA.........................................................................	21	2	2	0.50	1	1	0	0	0	0	0
...................................................................AAATTTAGCTTTGGATACCA.........................................................................	20	2	2	0.50	1	1	0	0	0	0	0
................................................................GCTAAATTTATCTTTGGATACCA.........................................................................	23	3	2	0.50	1	0	1	0	0	0	0
.................................................................ATAGATTTATCTTTGGATACCA.........................................................................	22	3	2	0.50	1	1	0	0	0	0	0
...................................................................AAACTTATCTTTGGATAC...........................................................................	18	1	2	0.50	1	1	0	0	0	0	0
.................................................................CTAAATTTATCTTTGAATACCA.........................................................................	22	3	2	0.50	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGAGACCA.........................................................................	20	2	2	0.50	1	0	0	1	0	0	0
.................................................................ATAAATTTATCTTTGGATGCCA.........................................................................	22	3	2	0.50	1	1	0	0	0	0	0
....................................................................AATTTATCTTTGGATACCAT........................................................................	20	2	2	0.50	1	0	0	0	1	0	0
....................................................................AATTTATCTTTGGATACGA.........................................................................	19	1	2	0.50	1	0	0	0	1	0	0
.................................................................ATAAATTTCTCTTTGGATACCA.........................................................................	22	3	2	0.50	1	0	1	0	0	0	0
..................................................................TAAATTTATCTATGGATACCA.........................................................................	21	2	2	0.50	1	1	0	0	0	0	0
................................................................GCTAAATTTATCTTTGGATAC...........................................................................	21	2	2	0.50	1	1	0	0	0	0	0
..................................................................TACATTTATCTTTGGATACCA.........................................................................	21	2	2	0.50	1	1	0	0	0	0	0
.................................................................TGAAATTTATCTTTGGATACCA.........................................................................	22	3	8	0.50	4	4	0	0	0	0	0
................................................................GGTAAATTTATCTTTGGAAACCA.........................................................................	23	3	2	0.50	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGATATCA.........................................................................	20	2	6	0.50	3	3	0	0	0	0	0
..................................................................TAAATATATCTTTGGATACCA.........................................................................	21	2	2	0.50	1	1	0	0	0	0	0
...................................................................AAATTTATCATTGGATACCA.........................................................................	20	2	4	0.50	2	2	0	0	0	0	0
................................................................GGCAAATTTATCTTTGGATACCA.........................................................................	23	3	2	0.50	1	1	0	0	0	0	0
................................................................GATAAATTTATCTTTGGATACTA.........................................................................	23	3	2	0.50	1	1	0	0	0	0	0
.................................................................ATGAATTTATCTTTGGATACCA.........................................................................	22	3	2	0.50	1	1	0	0	0	0	0
....................................................................AATTTATCTTTGGGTACCA.........................................................................	19	2	2	0.50	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACCT.........................................................................	20	2	2	0.50	1	1	0	0	0	0	0
...............................................................ATATAAATTTATCTTTGGAACCA..........................................................................	23	3	2	0.50	1	1	0	0	0	0	0
....................................................................CATTTATCTTTGGATACCA.........................................................................	19	2	4	0.50	2	2	0	0	0	0	0
...............................................................AGATAAATTTATCTTTGGATACGA.........................................................................	24	3	2	0.50	1	1	0	0	0	0	0
..................................................................TAAATTTATCTCTGGATACCA.........................................................................	21	2	2	0.50	1	1	0	0	0	0	0
................................................................GGTAAATTTATCTTTGGA..............................................................................	18	1	2	0.50	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGGATAAA..........................................................................	20	1	2	0.50	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACGA.........................................................................	20	1	2	0.50	1	1	0	0	0	0	0
.................................................................ATAAATTTATCTTTGGGTACCA.........................................................................	22	3	2	0.50	1	1	0	0	0	0	0
....................................................................AATTTATCTTTGGATACCC.........................................................................	19	2	6	0.50	3	0	0	0	0	2	1
...............................................................ATAAAAATTTATCTTTGGATACCA.........................................................................	24	3	2	0.50	1	1	0	0	0	0	0
..................................................................TAAATTTATCTCTGGATACC..........................................................................	20	2	2	0.50	1	1	0	0	0	0	0
...................................................................AAGTTTATCTTTGGATACCA.........................................................................	20	2	2	0.50	1	0	0	0	0	0	1
..................................................................TAAATTTATCTTTGCATACCA.........................................................................	21	2	2	0.50	1	0	0	0	0	0	1
..................................................................TGAATTTATCTTTGAATACCA.........................................................................	21	3	9	0.44	4	4	0	0	0	0	0
....................................................................AATTTATCTTTGGATACCG.........................................................................	19	2	5	0.40	2	2	0	0	0	0	0
..................................................................TAAATGTATCTTTGGATACC..........................................................................	20	2	3	0.33	1	1	0	0	0	0	0
.................................................................ATCAATTTATCTTTGGATAC...........................................................................	20	2	3	0.33	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACCACA.......................................................................	22	3	3	0.33	1	1	0	0	0	0	0
.................................................................ATAAATTTATCTTTCGATACCA.........................................................................	22	3	3	0.33	1	0	0	0	0	1	0
..................................................................TAAATTTATCTTTGGATTCCA.........................................................................	21	2	3	0.33	1	1	0	0	0	0	0
....................................................................AATTTGTCTTTGGATACCA.........................................................................	19	2	3	0.33	1	1	0	0	0	0	0
................................................................AATAAATTTATCTTTGGATACCA.........................................................................	23	3	3	0.33	1	1	0	0	0	0	0
.................................................................ATAAATTCATCTTTGGATACCA.........................................................................	22	3	3	0.33	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGAGAAAA.........................................................................	20	2	3	0.33	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGATAGCA.........................................................................	20	2	3	0.33	1	1	0	0	0	0	0
....................................................................TATTTATCTTTGGATACCA.........................................................................	19	2	3	0.33	1	1	0	0	0	0	0
..................................................................TGAATTTATCTTTGGATACCAC........................................................................	22	3	3	0.33	1	1	0	0	0	0	0
....................................................................AGTTTATCTTTGGATACTA.........................................................................	19	2	3	0.33	1	1	0	0	0	0	0
................................................................GTTAAATTTATCTTTGGATACA..........................................................................	22	2	3	0.33	1	1	0	0	0	0	0
....................................................................AATATATCTTTGGATACCA.........................................................................	19	2	9	0.33	3	3	0	0	0	0	0
..................................................................TAAATTTATCTTTGGATAA...........................................................................	19	1	3	0.33	1	0	0	0	1	0	0
..................................................................TAAATTTATCATTGGATACCA.........................................................................	21	2	3	0.33	1	0	0	1	0	0	0
...................................................................AAATTTATCTTTGAATAC...........................................................................	18	1	3	0.33	1	1	0	0	0	0	0
.....................................................................ATTTATCTTTGGATACCACT.......................................................................	20	2	3	0.33	1	1	0	0	0	0	0
....................................................................AATTTATCTTCGGATACCA.........................................................................	19	2	3	0.33	1	0	0	0	0	0	1
....................................................................AATTTATCTTTGGATGCCA.........................................................................	19	2	3	0.33	1	0	1	0	0	0	0
...............................................................ATACAAATTTATCTTTGGATACC..........................................................................	23	3	3	0.33	1	1	0	0	0	0	0
.................................................................ATAAATTTATCTTTGGAAACCA.........................................................................	22	3	10	0.30	3	3	0	0	0	0	0
..................................................................TAAATTTATCTTTGTATACC..........................................................................	20	2	7	0.29	2	2	0	0	0	0	0
..................................................................TGATTTTATCTTTGGATACCA.........................................................................	21	3	8	0.25	2	2	0	0	0	0	0
.................................................................ATAAATTTATCTTTTGATACCA.........................................................................	22	3	8	0.25	2	0	0	1	0	0	1
...................................................................AGATTTATCTTTGGATACACC........................................................................	21	3	4	0.25	1	1	0	0	0	0	0
.................................................................ATAAATGTATCTTTGGATACCA.........................................................................	22	3	4	0.25	1	1	0	0	0	0	0
....................................................................AATTTATCTTTGGACACCA.........................................................................	19	2	4	0.25	1	0	1	0	0	0	0
.................................................................ATAAATTTAACTTTGGATACCA.........................................................................	22	3	4	0.25	1	1	0	0	0	0	0
.................................................................ATAAATTTAGCTTTGGATACCA.........................................................................	22	3	4	0.25	1	1	0	0	0	0	0
.................................................................ATACATTTATCTTTGGATACCA.........................................................................	22	3	4	0.25	1	1	0	0	0	0	0
...................................................................ACATTTATCTTTGGATACCA.........................................................................	20	2	4	0.25	1	0	0	1	0	0	0
..................................................................TAAATTTATCTTTGTATACCA.........................................................................	21	2	4	0.25	1	0	0	0	0	0	1
.................................................................ATAAATTTATCTTTGGAGACCA.........................................................................	22	3	4	0.25	1	1	0	0	0	0	0
.................................................................ATAATTTTATCTTTGGATACCA.........................................................................	22	3	4	0.25	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGATAACA.........................................................................	20	2	4	0.25	1	1	0	0	0	0	0
...................................................................AGATTTACCTTTGGATACCA.........................................................................	20	3	9	0.22	2	2	0	0	0	0	0
.................................................................ATAAATTTATCTTTGTATACCA.........................................................................	22	3	18	0.22	4	3	0	0	0	1	0
.................................................................ATAAACTTATCTTTGGATACCA.........................................................................	22	3	5	0.20	1	1	0	0	0	0	0
................................................................GTTAAATTTATCTTTGGATACC..........................................................................	22	3	5	0.20	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGAATACCCA........................................................................	22	3	5	0.20	1	0	1	0	0	0	0
....................................................................AATTTATCTTTGGATTCCA.........................................................................	19	2	5	0.20	1	0	0	1	0	0	0
..................................................................TGAATTTATCTTTGGTTACCA.........................................................................	21	3	5	0.20	1	1	0	0	0	0	0
....................................................................AATTCATCTTTGGATACCA.........................................................................	19	2	5	0.20	1	0	0	0	0	1	0
...................................................................AAATTTATCTTTGGAACCA..........................................................................	19	2	15	0.20	3	2	1	0	0	0	0
...................................................................AAATTTATCTTTGGATTCCA.........................................................................	20	2	5	0.20	1	1	0	0	0	0	0
....................................................................AATTTATCTCTGGATACTA.........................................................................	19	2	5	0.20	1	0	0	0	0	1	0
...................................................................AAATTTATCTTTGTATACCA.........................................................................	20	2	10	0.20	2	0	0	0	1	0	1
................................................................GGTAAATTTATCTTTGGAC.............................................................................	19	2	5	0.20	1	1	0	0	0	0	0
..................................................................TAAATTTCTCTTTGGAGACCA.........................................................................	21	3	5	0.20	1	1	0	0	0	0	0
..................................................................TAAATTTATCTTTGGACCCACA........................................................................	22	3	6	0.17	1	1	0	0	0	0	0
.................................................................ATCAATTTATCTTTGGATACC..........................................................................	21	3	6	0.17	1	1	0	0	0	0	0
.................................................................ATAAATTTATCTATGGATACCA.........................................................................	22	3	6	0.17	1	1	0	0	0	0	0
..................................................................CAAATTTATCTTTGGATA............................................................................	18	1	6	0.17	1	1	0	0	0	0	0
....................................................................AATTTATCTTTGGATAGCA.........................................................................	19	2	6	0.17	1	1	0	0	0	0	0
...................................................................AAATTTATCTTTGGATACCATA.......................................................................	22	3	6	0.17	1	1	0	0	0	0	0
.....................................................................ATTCATCTTTGGATACCA.........................................................................	18	2	6	0.17	1	1	0	0	0	0	0
....................................................................AATTTATCTCTGGATACCA.........................................................................	19	2	6	0.17	1	0	0	1	0	0	0
.....................................................................ATTGATCTTTGGATACCA.........................................................................	18	2	13	0.15	2	2	0	0	0	0	0
..................................................................TGAATTTATCTTTGGAGACCA.........................................................................	21	3	7	0.14	1	1	0	0	0	0	0
....................................................................AATTTATCTTTGGATACCACC.......................................................................	21	3	7	0.14	1	1	0	0	0	0	0
.................................................................ATAAATTTATCTTTGGCTACCA.........................................................................	22	3	7	0.14	1	0	0	0	0	1	0
.................................................................ATAAAGTTATCTTTGGATACC..........................................................................	21	3	7	0.14	1	1	0	0	0	0	0
...................................................................AAACTTATCTTTGGGTACCA.........................................................................	20	3	7	0.14	1	1	0	0	0	0	0
.................................................................ATAAATTTATCATTGGATACCA.........................................................................	22	3	7	0.14	1	0	0	1	0	0	0
....................................................................AATTTATCCTTGGATACCA.........................................................................	19	2	7	0.14	1	0	1	0	0	0	0
.....................................................................TTTTATCTTTGGATACCA.........................................................................	18	2	15	0.13	2	2	0	0	0	0	0
..................................................................TAAATTTATCTTTGGAAAAAA.........................................................................	21	2	8	0.13	1	1	0	0	0	0	0
...............................................................ATATTAATTTATCTTTGGATACC..........................................................................	23	3	8	0.13	1	1	0	0	0	0	0
.................................................................ATAAATTTATGTTTGGATACCA.........................................................................	22	3	8	0.13	1	0	0	1	0	0	0
......................................................................TTTATCTTTGGATACAGATAAA....................................................................	22	3	8	0.13	1	0	0	0	0	1	0
..................................................................TAAATTTATCTTTGGAAAGA..........................................................................	20	2	8	0.13	1	1	0	0	0	0	0
.....................................................................ATTTATCTTTGGCTACCA.........................................................................	18	2	17	0.12	2	2	0	0	0	0	0
....................................................................AATTTATCTTTTGATACCA.........................................................................	19	2	9	0.11	1	0	1	0	0	0	0
..................................................................TAATTTTCTCTTTGGATACCA.........................................................................	21	3	9	0.11	1	1	0	0	0	0	0
.....................................................................ATTTATCTTTGGATACCG.........................................................................	18	2	9	0.11	1	0	0	0	0	1	0
..................................................................TAAATTTATCTTTGGAACC...........................................................................	19	2	10	0.10	1	1	0	0	0	0	0
...................................................................................................................................GGAATTTTGAACGAAAGGC..........	19	3	20	0.10	2	0	0	0	0	2	0
......................................................................TTTATCTTTGGATACCTA........................................................................	18	2	20	0.10	2	2	0	0	0	0	0
.....................................................................ATTTATCTTTGAATACCA.........................................................................	18	2	20	0.10	2	1	1	0	0	0	0
.....................................................................ATTTAGCTTTGGATACCA.........................................................................	18	2	20	0.10	2	2	0	0	0	0	0
........GTTCGACTTTTAAAAAAAC.....................................................................................................................................	19	2	11	0.09	1	1	0	0	0	0	0
...................................................................AGATTTATCTTTGGCTACCA.........................................................................	20	3	11	0.09	1	1	0	0	0	0	0
....................................................................AATGTATCTTTGGATACCAC........................................................................	20	3	11	0.09	1	1	0	0	0	0	0
....................................................................AATTTATCTTTGCATACCA.........................................................................	19	2	11	0.09	1	0	0	0	0	1	0
.....................................................................ATTTATCTTTGGATCCCA.........................................................................	18	2	12	0.08	1	0	0	0	0	1	0
...................................................................AAATTTATCTTTGGATAAC..........................................................................	19	2	13	0.08	1	1	0	0	0	0	0

ATACATTAAAAGCTTAAAATTTTTTTGGTATGGTACTCTAAGGTAAACTCCATTCAAATAGGTTACATTTAAATAGAAACCTATGTTTAAATTTACTAAAGATTAAAATCTAACTTAACCAATTATTGGAACCTTAAAACTTTCGTTCGGCGTACAATTT ************************************************.(((((((((((((.(((....)))..)))))))..))))))..................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo
...CATTAAAAGCTTCAAATTT..........................................................................................................................................	19	1	1	1.00	1	1	0
....................TTTTTGGTTATGGTACTCTA........................................................................................................................	20	2	19	0.05	1	0	1
.................TATTTTTTTGTTATGGTATTCTA........................................................................................................................	23	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_12928:261905-262064 +	dan_759	TA--TGTAATTTTCGAATTTTAAAAAAACCATACCATGAGATTCCATTTGAGGTAAGTTTATC-CA---AT------------------------------------------------GT---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATACAAATTTAAATGATTTCTAATTTTAGATTGAATTGGTTAATAACCTTGGAATTTTGAAAGCAAGCCGCATGTTAAA
droBip1	scf7180000394711:982-1137 +		TT--TGTAATTTTCGAATTTTAAAAAAACCATACCATGAGATTCCGTTTGAGGTAAGAGTAAT-TA----------------------------------------------------------------------------------------------------------------------------AAATT-A--------------------------ATTTATGACAAAAAATTGTATTGCTTTTTATTTGTAGATTCAATTAGTTAATAACCTTGGCATTTTAAGAGCACGCCGCTTACTAAA
droKik1	scf7180000301817:4883-5048 +		TT--TGCAACTTTCACATTCTTAAAAAACCATATCATGAGATACCATTTGAAGTAAGTTTACC-TC---CC------------------------------------------G-AAAT------------------------------------------T--TTA-TATCA----CACTC--TCAATAATATT-A--------------------------ATTTAC----------------AA-TTCCAATTTTAGATTGAATTGGTTAATAACTTGGGAATTTTGAAGGCACGTCGTACATTAAA
droFic1	scf7180000453298:8098-8250 -		TT--TGTAACTTTCACATTCTCAAAAAGCCATATCACGAAATTCCATTTGAGGTAAGTTTAATAT----TC------------------------------------------G-----GT---------------------------------------AT----------A-------------------C--A-CTC-----------------TAGTGTTGTCGC----------------ACATTTTTATTTCAGATTGAATTAGTCAATAACCTAGGAATTTTAAAAGCACGACGGACATTAAA
droEle1	scf7180000491278:1933832-1933984 -		TT--TGTAACTTTCATATTCTCAAAAAGCCATATCATGAGATTCCGTTTGAGGTAAGTTTTGGCT----GT------------------------------------------GATTA-------------------------------------------A-----------------------------AC--T-CCT-----------------TAAACTAAACGC----------------TA-TTTATATTTTAGATTGAATTGTCTAATAACCTAGGCATTTTAAAAGCACGCCGGACATTGAA
droRho1	scf7180000770515:7819-7968 +		TT--TGTAACTTTCATATTCTTAAAAAGCCATATCATGAGATTCCATTTGAGGTAAGTTTTGCGT----GT------------------------------------------A-ATTT------------------------------------------T--TGA-GAAAT-----------------------T--------------------------ACTCTC----------------AA-TTTATATTTCAGATTGAATTGGCTAACAACCTAGGCATATTAAAAGCACGCCGGACTTTAAA
droBia1	scf7180000301495:1186843-1186995 -		TT--TGCAACTTTCATATTCTTAAAAAGCCATATCATGAGATTCCATTTGAAGTAAGTTTTCGCTA-------------------------------------------------TTTCAT---------------------------------------AC--ACTCAAAAT-----------------------AC-------------------------TCTAAC----------------AA-TTCACACTTTAGATTGAACTGGTTAATAACCTGGGGATTTTAAAAGCTCGCCGGACGTTAAA
droTak1	scf7180000414437:17033-17131 -		TAGCTTCATTTCTCGT----------------------------------------------------------------------------------------------------------------------------------------------------TAAC---------------------------------------------TTTTGAAATTACTACA----------------A--ATTTTTTTTCAGATTGAATTGGCTAATAACCTAGGAATTTTAAAAGCACGTCGGACGTTGAA
droEug1	scf7180000408984:110300-110448 +		TA--TGCAATTTTCATATTCTCAAAAAACCGTATCATGAGATTCCATTTGAGGTAAGTTTTTT-TA-------------------------------------------------CTGTTT---------------------------------------AT--T--CAATAT-----------------------C--------------------------ACTTGA----------------AG-TTTATTTTTCAGATTGATTTGGCTAATAACCTCGGAATTTTAAAAGCAAGTCGATCATTAAA
dm3	chr4:1141183-1141334 -		TT--TGTAACTTCCATATTCTCAAAAAACCGTATCACGAAATTCCATTTAAGGTAAGTTTTAACTA-------------------------------------------------CTTTTT---------------------------------------AG--TAATGTAAT-----------------------A--------------------------ACTTGC----------------AC-TTCATATTTTAGATTGAACTGGTAAATAACCTAGGTATTTTAAAAGCACGTCGGACACTAAA
droSim2	4:924097-924248 -		TT--TGTAACTTTCATATTCTCAAAAAGCCGTATCACGAAATTCCGTTTGAGGTAAGTTTTAACCA-------------------------------------------------CTTTTT---------------------------------------AT--TGACGTAAT-----------------------A--------------------------ACTTGC----------------AC-TTTATATTTTAGATTGAATTGGTAAATAACCTAGGTATTTTAAAAGCACGTCGGACATTGAA
droSec2	scaffold_40:186319-186470 -		TT--TGTAACTTTCATATTCTCAAAAAGCCGTATCACGAAATTCCGTTTGAGGTAAGTTTTAACTA-------------------------------------------------CTTTTT---------------------------------------AT--TGACGTAAT-----------------------A--------------------------ACTTGC----------------AC-TTTATATTTTAGATTGAATTGGTAAATAACCTAGGTATTTTAAAAGCACGTCGGACATTGAA
droYak3	4:1224092-1224243 -		TT--TGCAACTTTCATATTCTCAAAAAGCCGTATCATGAAATTCCGTTTGAGGTGAGTTTTACCTA-------------------------------------------------CTTTTT---------------------------------------AT--TAACATAAT-----------------------A--------------------------ACTTGC----------------AC-TTTATATTTTAGATTGAATTGGTTAATAACCTAGGTATTTTAAAAGCACGTCGACTGTTGAA
droEre2	scaffold_4512:118541-118692 +		TT--TGTAACTTTCATATTCTCAAAAAGCCGTATCATGAAATTCCGTTTGAGGTAAGTTCTAACTA-------------------------------------------------CTTTTT---------------------------------------AT--TAACGTAAT-----------------------A--------------------------ACTTGC----------------AC-TTTATATTTTAGATTGAATTGGTTAATAACCTAGGTATTTTAAAAGCACGTCGAACGTTAAA
dp5	Unknown_singleton_1502:2996-3147 -		TT--TGTAACTTTCGCATTCTGAAAAAGCCATATCATGAAATACCATTCGAGGTAAGTTGCTC-------T------------------------------------------GATTACGC---------------------------------------ATAC-------------------------------T-CCCACCTG------------------ACTTTG----------------A--CTTTAATTTCAGATTGAATTGGTCAATAATCTAGGAATTTTAAAAGCACGTCGTGCACTAAA
droPer2	scaffold_51:343695-343846 -		TT--TGTAACTTTCGCATTCTGAAAAAGCCATATCATGAAATACCATTCGAGGTAAGTTGCTC-------T------------------------------------------GATTACGC---------------------------------------ATAC-------------------------------T-CCCACCTG------------------ACTTTG----------------A--CTTTAATTTCAGATTGAATTGGTCAATAATCTAGGAATTTTAAAAGCACGTCGTGCACTAAA
droWil2	scf2_1100000004943:1792959-1793124 +		TT--TGCAATTTTCGCATCCTGAAAAAGCCGTACCATGAAATACCATTCCAGGTGAGTGTCCT-CATATCTA--------------------------------------------TAGGT---------------------------------------AG--TATCACAAT--------AACTCTATT----------------------------A--TAA-TTGC-----------------CTTTGTGTTTTCAGATCGAACTAGTAAATAACTTGGGCATTTTAAGAGCACGCCGTACGCTGAA
droVir3	scaffold_13052:1471943-1472138 +	dvi_22054	TT--TGCAGCTTTCGCATTTTAAAGAAGCCATATCACGAAATTCCGTTCCAGGTGAGTGTTTA-TA---ATCAAAGGACAACAGAAATCAAAATTGTTGTAAGGAGTCGTTATCACA--GA---------------------------------------ATAT-------------------------------G-GTCAA-------------------CCAATACA----------------AACCTACATTTATAGATTGAACTGGTCAACAACCTGGCAATATTAAAAGCACGCCACACACTCAA
droMoj3	scaffold_6498:458965-459173 +		TT--TGCAACTTTCGCATTGTAAAAAAGCCATATCATGAAATTCCATTCCAGGTGAGGCCTCA-CA---CTATAAGAACA--------------------------------------CACAGGATAGTAAATTTTCCAAACACATCACATATTAACAAAAT--T--TAATATAAATCA-----------AAGTC-A------------------------ATAAAAGA----------------TA-ATTAATTTTCAGATTGAGTTGGTTAATAATCTTGGAATACTGAAGGCACGCCACACACTCAA
droGri2	scaffold_14822:478416-478592 +		TA--TGCAATTTTCGCATATTAAAAAAGCCATATCATGAAATACCATTCCAGGTGAGATCTAT-AT---CTATAT--------------------------------------ATATATAT---------------------------------------ATAT-------------------------------A-TATATATGAATTTGCCTATCGA--TAATTACC----------------AATCGATATTTACAGATTGAGCTGGTGAACAATTTGGGCATTTTAAAGGCACGTCGCACTTTGAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TA--TGTAATTTTCGAATTTTAAAAAAACCATACCATGAGATTCCATTTGAGGTAAGTTTATC-CA---AT------------------------------------------------GT---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATACAAATTTAAATGATTTCTAATTTTAGATTGAATTGGTTAATAACCTTGGAATTTTGAAAGCAAGCCGCATGTTAAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................AAATT--------------------------------T------------ATCTTTGG-------------ATACC..........................................................................	19	1	119.00	119	7	110	0	0	0	2
........................................................................................................................T---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATACC..........................................................................	20	1	86.00	86	1	83	0	1	1	0
................................................................................................................................................................AAATT--------------------------------T------------ATCTTTGG-------------ATAC...........................................................................	18	1	47.00	47	1	46	0	0	0	0
.................................................................................................................................................................AATT--------------------------------T------------ATCTTTGG-------------ATACC..........................................................................	18	1	44.00	44	1	42	1	0	0	0
........................................................................................................................T---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATAC...........................................................................	19	1	36.00	36	0	35	0	0	0	1
........................................................................................................................T---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATA............................................................................	18	2	12.50	25	1	16	3	1	1	3
................................................................................................................................................................AAATT--------------------------------T------------ATCTTTGG-------------ATACCG.........................................................................	20	2	2.50	5	4	1	0	0	0	0
........................................................................................................................T---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATACCG.........................................................................	21	2	1.50	3	0	1	0	0	1	1
................................................................................................................................................................AAATT--------------------------------T------------ATCTTTGG-------------ATACCC.........................................................................	20	3	1.33	4	0	3	1	0	0	0
................................................................................................................................................................AAATT--------------------------------T------------ATCTTTGG-------------ATACAA.........................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................T---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATACA..........................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................T---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATACCC.........................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................................................................................................T---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATACAA.........................................................................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................T---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATACT..........................................................................	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................ATT--------------------------------T------------ATCTTTGG-------------ATACAAC........................................................................	19	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................AATT--------------------------------T------------ATCTTTGG-------------ATACAA.........................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................T---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATACCT.........................................................................	21	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................ATAACCTTGGAATTTTGAAAGCAAGCC..........	27	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................GT---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATACC..........................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................AAATT--------------------------------T------------ATCTTTGG-------------ATACAAAA.......................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................AAATT--------------------------------T------------ATCTTTGG-------------ATACCT.........................................................................	20	2	0.50	1	0	1	0	0	0	0
.................................................................................................................................................................AATT--------------------------------T------------ATCTTTGG-------------ATACCC.........................................................................	19	6	0.50	3	0	0	1	2	0	0
.................................................................................................................................................................AATT--------------------------------T------------ATCTTTGG-------------ATACCG.........................................................................	19	5	0.40	2	0	2	0	0	0	0
........................................................................................................................T---------------------------------------AAATT--------------------------------T------------ATCTTTGG-------------ATAA...........................................................................	19	3	0.33	1	0	0	0	0	0	1
..................................................................................................................................................................ATT--------------------------------T------------ATCTTTGG-------------ATACCG.........................................................................	18	9	0.11	1	0	0	0	1	0	0
................................................................................................................................................................AAATT--------------------------------T------------ATCTTTGG-------------ATAAC..........................................................................	19	13	0.08	1	0	1	0	0	0	0

droBip1

TT--TGTAATTTTCGAATTTTAAAAAAACCATACCATGAGATTCCGTTTGAGGTAAGAGTAAT-TA----------------------------------------------------------------------------------------------------------------------------AAATT-A--------------------------ATTTATGACAAAAAATTGTATTGCTTTTTATTTGTAGATTCAATTAGTTAATAACCTTGGCATTTTAAGAGCACGCCGCTTACTAAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TT--TGCAACTTTCACATTCTTAAAAAACCATATCATGAGATACCATTTGAAGTAAGTTTACC-TC---CC------------------------------------------G-AAAT------------------------------------------T--TTA-TATCA----CACTC--TCAATAATATT-A--------------------------ATTTAC----------------AA-TTCCAATTTTAGATTGAATTGGTTAATAACTTGGGAATTTTGAAGGCACGTCGTACATTAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TT--TGTAACTTTCACATTCTCAAAAAGCCATATCACGAAATTCCATTTGAGGTAAGTTTAATAT----TC------------------------------------------G-----GT---------------------------------------AT----------A-------------------C--A-CTC-----------------TAGTGTTGTCGC----------------ACATTTTTATTTCAGATTGAATTAGTCAATAACCTAGGAATTTTAAAAGCACGACGGACATTAAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TT--TGTAACTTTCATATTCTCAAAAAGCCATATCATGAGATTCCGTTTGAGGTAAGTTTTGGCT----GT------------------------------------------GATTA-------------------------------------------A-----------------------------AC--T-CCT-----------------TAAACTAAACGC----------------TA-TTTATATTTTAGATTGAATTGTCTAATAACCTAGGCATTTTAAAAGCACGCCGGACATTGAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TT--TGTAACTTTCATATTCTTAAAAAGCCATATCATGAGATTCCATTTGAGGTAAGTTTTGCGT----GT------------------------------------------A-ATTT------------------------------------------T--TGA-GAAAT-----------------------T--------------------------ACTCTC----------------AA-TTTATATTTCAGATTGAATTGGCTAACAACCTAGGCATATTAAAAGCACGCCGGACTTTAAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TT--TGCAACTTTCATATTCTTAAAAAGCCATATCATGAGATTCCATTTGAAGTAAGTTTTCGCTA-------------------------------------------------TTTCAT---------------------------------------AC--ACTCAAAAT-----------------------AC-------------------------TCTAAC----------------AA-TTCACACTTTAGATTGAACTGGTTAATAACCTGGGGATTTTAAAAGCTCGCCGGACGTTAAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAGCTTCATTTCTCGT----------------------------------------------------------------------------------------------------------------------------------------------------TAAC---------------------------------------------TTTTGAAATTACTACA----------------A--ATTTTTTTTCAGATTGAATTGGCTAATAACCTAGGAATTTTAAAAGCACGTCGGACGTTGAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TA--TGCAATTTTCATATTCTCAAAAAACCGTATCATGAGATTCCATTTGAGGTAAGTTTTTT-TA-------------------------------------------------CTGTTT---------------------------------------AT--T--CAATAT-----------------------C--------------------------ACTTGA----------------AG-TTTATTTTTCAGATTGATTTGGCTAATAACCTCGGAATTTTAAAAGCAAGTCGATCATTAAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TT--TGTAACTTCCATATTCTCAAAAAACCGTATCACGAAATTCCATTTAAGGTAAGTTTTAACTA-------------------------------------------------CTTTTT---------------------------------------AG--TAATGTAAT-----------------------A--------------------------ACTTGC----------------AC-TTCATATTTTAGATTGAACTGGTAAATAACCTAGGTATTTTAAAAGCACGTCGGACACTAAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................TAGGTATTTTAAAAGCACGTCGGA.......	24	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TAGGTATTTTAAAAGCACGTCGGACAC....	27	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......TAACTTCCATATTCTCAAAAAACCGTA.....................................................................................................................................................................................................................................................................................	27	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......AACTTCCATATTCTCAAAAAACCGTA.....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CCTAGGTATTTTAAAAGCACGTCGG........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TCACGAAATTCCATTTAAGGTAAGTTT..........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TTAAAAGCACGTCGGACACTA..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................AACCGTATCACGAAATTCC.........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TTAAAAGCACGTCGGACACT...	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TATTTTAGATTGAACTGG........................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TT--TGTAACTTTCATATTCTCAAAAAGCCGTATCACGAAATTCCGTTTGAGGTAAGTTTTAACCA-------------------------------------------------CTTTTT---------------------------------------AT--TGACGTAAT-----------------------A--------------------------ACTTGC----------------AC-TTTATATTTTAGATTGAATTGGTAAATAACCTAGGTATTTTAAAAGCACGTCGGACATTGAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................TAGGTATTTTAAAAGCACGTCGGACAT....	27	1	3.00	3	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0
..........................................................................................................................................................................................................................................................................................GTATTTTAAAAGCACGTCGGACATT...	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...........TTCATATTCTCAAAAAGCCGTATCACGA...............................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................ACCTAGGTATTTTAAAAGCACGTCGGACA.....	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................TATTTTAAAAGCACGTCGGACATTGA.	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TTGGTAAATAACCTAGGTATTTTAAA..................	26	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
............TCATATTCTCAAAAAGCCGTATCACGA...............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................ACCTAGGTATTTTAAAAGCACGTCGGA.......	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TTTTAAAAGCACGTCGGACATTGAA	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................GCCGTATCACGAAATTCCGTTTGAGA.................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................TTAACCA-------------------------------------------------CTTTTT---------------------------------------AT--TGACGTAAT-----------------------A--------------------------.......................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................ACCTAGGTATTTTAAAAGCACGTCGGAC......	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TTAGATTGAATTGGTAAATAACCTAGG...........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............TATTCTCAAAAAGCCGTA.....................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

TT--TGTAACTTTCATATTCTCAAAAAGCCGTATCACGAAATTCCGTTTGAGGTAAGTTTTAACTA-------------------------------------------------CTTTTT---------------------------------------AT--TGACGTAAT-----------------------A--------------------------ACTTGC----------------AC-TTTATATTTTAGATTGAATTGGTAAATAACCTAGGTATTTTAAAAGCACGTCGGACATTGAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................ATTTTAAAAGCACGTCGGAC......	20	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................ATTTTAAAAGCACGTCGGACATTGA.	25	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................GTAAATAACCTAGGTATT.......................	18	1	1.00	1	0	0	1	0
..................TCTCAAAAAGCCGTATCACGA...............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.............................CGTATCACGAAATTCCGTTTGA...................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.......................AAAAGCCGTATCACGAAATTCCGT.......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0

droYak3

TT--TGCAACTTTCATATTCTCAAAAAGCCGTATCATGAAATTCCGTTTGAGGTGAGTTTTACCTA-------------------------------------------------CTTTTT---------------------------------------AT--TAACATAAT-----------------------A--------------------------ACTTGC----------------AC-TTTATATTTTAGATTGAATTGGTTAATAACCTAGGTATTTTAAAAGCACGTCGACTGTTGAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................GATTGAATTGGTTAATAACCTAGGT..........................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............ATATTCTCAAAAAGCCGTAT....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................CTCAAAAAGCCGTATCATGAA..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............CATATTCTCAAAAAGCCGTA.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................AGATTGAATTGGTTAATAACCTAGGC..........................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TT--TGTAACTTTCATATTCTCAAAAAGCCGTATCATGAAATTCCGTTTGAGGTAAGTTCTAACTA-------------------------------------------------CTTTTT---------------------------------------AT--TAACGTAAT-----------------------A--------------------------ACTTGC----------------AC-TTTATATTTTAGATTGAATTGGTTAATAACCTAGGTATTTTAAAAGCACGTCGAACGTTAAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................................ATTTTAAAAGCACGTCGAAC......	20	1	2.00	2	0	0	0	0	2	0	0
.................TTCTCAAAAAGCCGTATCATGAAAT............................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...........................GCCGTATCATGAAATTCCGTTTGAG..................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................TAAAAGCACGTCGAACGTT...	19	1	1.00	1	0	0	0	0	0	1	0
................ATTCTCAAAAAGCCGTATCATG................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................AACCTAGGTATTTTAAAAGCACGTC..........	25	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................TTAGATTGAATTGGTTAATAACCTAGGC..........................	28	1	1.00	1	0	1	0	0	0	0	0
................ATTCTCAAAAAGCCGTATCATGA...............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0

dp5

TT--TGTAACTTTCGCATTCTGAAAAAGCCATATCATGAAATACCATTCGAGGTAAGTTGCTC-------T------------------------------------------GATTACGC---------------------------------------ATAC-------------------------------T-CCCACCTG------------------ACTTTG----------------A--CTTTAATTTCAGATTGAATTGGTCAATAATCTAGGAATTTTAAAAGCACGTCGTGCACTAAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................AATTTTAAAAGCACGTCGT........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TT--TGTAACTTTCGCATTCTGAAAAAGCCATATCATGAAATACCATTCGAGGTAAGTTGCTC-------T------------------------------------------GATTACGC---------------------------------------ATAC-------------------------------T-CCCACCTG------------------ACTTTG----------------A--CTTTAATTTCAGATTGAATTGGTCAATAATCTAGGAATTTTAAAAGCACGTCGTGCACTAAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TT--TGCAATTTTCGCATCCTGAAAAAGCCGTACCATGAAATACCATTCCAGGTGAGTGTCCT-CATATCTA--------------------------------------------TAGGT---------------------------------------AG--TATCACAAT--------AACTCTATT----------------------------A--TAA-TTGC-----------------CTTTGTGTTTTCAGATCGAACTAGTAAATAACTTGGGCATTTTAAGAGCACGCCGTACGCTGAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................AAAAGCCGTACCATGAAATACC.........................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
...........................................................................................................................................................................................ATT----------------------------A--TAA-TTGC-----------------CTTTGTGTTTTC....................................................	23	1	1.00	1	0	0	0	1	0
....................TGAAAAAGCCGTACCATGAAATAC..........................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................GATCGAACTAGTAAATAACT...............................	20	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................A--TAA-TTGC-----------------CTTTGTGTTTTCAG..................................................	22	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................GAACTAGTAAATAACTTGGGC..........................	21	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................TGGGCATTTTAAGAGCACGCCGTACGCT...	28	1	1.00	1	0	1	0	0	0
.T--TGCAATTTTCGCATCCTGAAAAAGCCG.......................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................CGAACTAGTAAATAACTTGGGC..........................	22	1	1.00	1	1	0	0	0	0

droVir3

TT--TGCAGCTTTCGCATTTTAAAGAAGCCATATCACGAAATTCCGTTCCAGGTGAGTGTTTA-TA---ATCAAAGGACAACAGAAATCAAAATTGTTGTAAGGAGTCGTTATCACA--GA---------------------------------------ATAT-------------------------------G-GTCAA-------------------CCAATACA----------------AACCTACATTTATAGATTGAACTGGTCAACAACCTGGCAATATTAAAAGCACGCCACACACTCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........TTCGCATTTTAAAGAAGCC........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TAAAGAAGCCATATCACGAAATTCC.........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTTAAAGAAGCCATATCACGAAATTCCGT.......................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGGTCAACAACCTGGCAATATTAAAAG................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CTGGTCAACAACCTGGCAATA.......................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TAAAGAAGCCATATCACGAAATTCCG........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTTAAAGAAGCCATATCACGAA..............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TT--TGCAACTTTCGCATTGTAAAAAAGCCATATCATGAAATTCCATTCCAGGTGAGGCCTCA-CA---CTATAAGAACA--------------------------------------CACAGGATAGTAAATTTTCCAAACACATCACATATTAACAAAAT--T--TAATATAAATCA-----------AAGTC-A------------------------ATAAAAGA----------------TA-ATTAATTTTCAGATTGAGTTGGTTAATAATCTTGGAATACTGAAGGCACGCCACACACTCAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................................................................................................................................................................AATCTTGGAATACTGAAGGCACGCC..........	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CTTGGAATACTGAAGGCACG............	20	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................ATTGAGTTGGTTAATAATCTTGGA..........................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATACTGAAGGCACGCCACACA.....	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................GATTGAGTTGGTTAATAAT................................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................TGGAATACTGAAGGCACGCCAC........	22	1	1.00	1	1	0	0	0	0	0

droGri2

TA--TGCAATTTTCGCATATTAAAAAAGCCATATCATGAAATACCATTCCAGGTGAGATCTAT-AT---CTATAT--------------------------------------ATATATAT---------------------------------------ATAT-------------------------------A-TATATATGAATTTGCCTATCGA--TAATTACC----------------AATCGATATTTACAGATTGAGCTGGTGAACAATTTGGGCATTTTAAAGGCACGTCGCACTTTGAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................................................................................................................................GCTGGTGAACAATTTGGGCATTTT.....................	24	1	1.00	1	1	0
........ATTTTCGCATATTAAAAAAGCCATATCAT.................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0
............................................................................................................................................................................................................................................................................GGTGAACAATTTGGGCATT.......................	19	1	1.00	1	1	0

dan_759

scaffold_12928:261955-262014 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.4	-7.2	-7.0