dan_740

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GTTTACATCCTATGCGTGTGTGATTGAAAGGTGTAGAGGTGTGTCTGTGTGTGTGTGTGTAAACAACAACAAACAATCAGCTGATTGATAGGCCATAAATTATAGAAAAATTTATTAAATTGGGTAACATTTGTGGGGATAGTAGAACAATACTCTTTCTAAACTTTATTTAAAATTTTATTAATTTTAAACGAATTCCAGGTCTAATCTTACCCCGCCAAAGCCCCTGACAGCATGGAGCTACAACTTTG ************************************************.(((.(((....)))))).....(((((....))))).......(((((((.......)))))))....(((((....(((((((((((.((((......)))).)))))).......(((((((((.....)))))))))))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	V106 head	M058 embryo	V055 head	V105 male body	V039 embryo
.............................................................................................................................................................................................................AATCTTACCCCGCCAAAGCCCCT.......................	23	0	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................CTGACAGCATGGAGCTACA......	19	0	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................AAGCCCCTGACAGCATGGAGCT.........	22	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................TTACCCCGCCAAAGCCCCTGACAGCA................	26	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................TCAGGTCTAATCTTACCCCGCCAAAGCCC.........................	29	1	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................CCCCGCCAAAGCCCCTGACAGCATGGA............	27	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................CAGGTCTAATCTTACCCCGCCAAA.............................	24	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................GCCAAAGCCCCTGACAGC.................	18	0	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................CGCCAAAGCCCCTGACAGCATGGAGC..........	26	0	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................GACAGCATGGAGCTACAACTTT.	22	0	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................CGCAAAAGCCCCTGACAGCATGGAGC..........	26	1	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................AATTCCAGGTCTAAGCTCAAC.....................................	21	3	3	1.00	3	1	1	0	0	1	0
..................................................................................................................................................................................................................TACCCCGCCAAAGCCCCTGACA...................	22	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................................ATTTGCGGGGAGTGTAGAACA......................................................................................................	21	3	2	0.50	1	0	0	0	1	0	0
.............................GGTGTAGAGGTGATTCTGTG..........................................................................................................................................................................................................	20	2	3	0.33	1	1	0	0	0	0	0
............................................................AAACAACAACCAACAATC.............................................................................................................................................................................	18	1	7	0.14	1	0	0	0	0	0	1
............................................................ATACAACAACAAGCAATCAG...........................................................................................................................................................................	20	2	17	0.06	1	0	0	1	0	0	0
..........................TAAAGTGGAGAGGTGTGTC..............................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0	0
............................................................AAACAAGCACAAACAATCAAC..........................................................................................................................................................................	21	3	20	0.05	1	0	0	1	0	0	0

CAAATGTAGGATACGCACACACTAACTTTCCACATCTCCACACAGACACACACACACACATTTGTTGTTGTTTGTTAGTCGACTAACTATCCGGTATTTAATATCTTTTTAAATAATTTAACCCATTGTAAACACCCCTATCATCTTGTTATGAGAAAGATTTGAAATAAATTTTAAAATAATTAAAATTTGCTTAAGGTCCAGATTAGAATGGGGCGGTTTCGGGGACTGTCGTACCTCGATGTTGAAAC ************************************************.(((.(((....)))))).....(((((....))))).......(((((((.......)))))))....(((((....(((((((((((.((((......)))).)))))).......(((((((((.....)))))))))))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V055 head	M044 female body	V105 male body
.......................................................................................................................................................................................................................GCGGTCTCGGGGACTCCCGT................	20	3	3	0.33	1	0	1	0	0
.................................................................................................................................................................................................TTAAGGTCCAGATTCGAGT.......................................	19	2	3	0.33	1	1	0	0	0
...............................................................................................................................................................................................................AGAGTGGGGCGGTATCGG..........................	18	2	5	0.20	1	0	1	0	0
...........................................................................................CGGTATTTACTATCTTTG..............................................................................................................................................	18	2	20	0.15	3	3	0	0	0
............................ACCACATCTCCACACAAAAACA.........................................................................................................................................................................................................	22	3	7	0.14	1	1	0	0	0
................................................................................................................................................................................................GTTAAGGTCCAGATTCGAGT.......................................	20	3	11	0.09	1	0	0	1	0
...............................................................................................................................................................................................................AGAGAGGGGCGGTATCGGGG........................	20	3	13	0.08	1	0	0	0	1
...............................................................................CGACTATCTATCCGTGATT.........................................................................................................................................................	19	3	13	0.08	1	0	0	1	0
..................................................................................................................................................................................................................ATAGGGCGGGTTCGGGGTCT.....................	20	3	15	0.07	1	0	0	1	0
............................................................................................................................................CCATCTAGTTATGAGAAAAA...........................................................................................	20	3	16	0.06	1	1	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_12916:15335932-15336182 +	dan_740	GTTTACATCCTATGCGTGT--GTGATTGAAAG---------G-TG----TAGAGGTGTG---TCTGTGTGTGTGTGTGTAAACAACAACAAACAATCAGCTGATTG-ATAGGCCATAAATTATAGA----AAAATTTATTAAATTGGGTAACATTT--------------------------------------------------------------------------------------------------------------------------------------------------GTGGGGATAGTAGAACAATACTCTTTC-TAAACTTTATTTAAAATTTTATTAATTTTAAACGAAT----T--------------------------------------CCAGGTCTAATCTTAC------CCCGCCAAAGCCCCTGACAGCATGGAGCTACAACTTTG-
droBip1	scf7180000396572:1687389-1687678 -		GTTTACATCCAATGCGTGT--GTGATTGAAAG---------G-TG----TAGTGACGTG---TACGTGTGTGCGTGCGTAAACAACAACAAACCAACAGCTGATTG-AGCGGCCATAAATTATTAA-----AAGTTAATCAAACTAACTAAAACTA-GT----------------------GGTTGGAAACAAGAAATTAAT------------AG---------------------------ATA--TATTATTTT----------------------------------------------------TAGTAGAAGGAT------T---------------------------------ACCCTTCTCCCAACTACCCAACAGTTTTTAGAACATTATTTTCTTATTTCTAGGTGTAATCTAACCACTAGCCCGCCAAAGCCCCTGACAGCATGGAGCTACAACTTTG-
droKik1	scf7180000302384:52601-52949 -		GTTTACATCGTGTGCGTGTGAGTGATTGAACACAG-A--AT------------AA-GTG---CA--GGTGTTTGTGGGTAAACAACAACAAACGATCAGCTGACGATGGCGGCCATAAATTAACCCAAAAGATATTGTTTAAAAC----------CATT----------------------TGGGGTCAAGAAGA--------------------GCAAAGGGTTTTTTAATTTAAAAATTAACGATATATTAGCATTAATAT-A-TTAACTATTAA--CTGACTTGAGATCTTGTATAGATTAATA----------TTACTTTTTTTTAATAATTAAATTTAAAATTTATCTAAAACTCTCTCCATCTTCT----------------------------------ATTAACAGGTCCAAATTAGTCAACAGTCAGCCCCAAACCTTGACCGGATGGAGCTGCAACTTCG-
droFic1	scf7180000454115:157854-157962 +		GTTTACATCTGATGAGTGT--GTGATTGAAGAATTCA--TTTAGT----TAGTTA-GTA---CAGGAGTGTGGGAACGTAAACAACAACAAACCGTCAGCTGATCA-AGCGGCCATAAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491028:1622806-1622931 -		GTTTACATCTGGCGAGAGT--GGGATTGAACCAC------CTATT----TATTTA-GTA---TGGAAGTGTGGGTACGTAAACAACAACAAACTATCAGCTGAC-----CGGCCATAAATTAACCCAT-CGAAATGGTTAAAATT----------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-
droRho1	scf7180000766421:5601-5727 -		GTTTACATCTGGTGAGTGC--GGGACTTAGCCTT------CTATA----TATTTA-GTA---CAGAAGTGTGGGTACGTAAACAACAACAAATAATCAGCTGACTG-AGCGGCCATAAATTAACCGTT-CGAAACTTATTAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302422:9127664-9127810 +		GTTTACATCTGCCGAGTGT--TCGATTAGACACTCGA--ATA-TGTTCCTAGTTA-GTA---TGGCAGTGTGGGTACGTAAACAACAACAAACCGTCAGCTGACCG-AGCGGCCATAAATTAACCCAT-CTAAATTGATCGAATT----------CA-T---------------------------------------------------------------------------------------------------------------------------TTTTGTGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-
droTak1	scf7180000415604:140226-140365 -		GTTTACATCTGTTGAGTGT--TCGATTAAACACCTCT--ATA-TGTTCGTAGTTA-GTA---TGGGAGTGTGGGTACGTAAACAACAACAAACCATCAGCCG-----AGCGGCCATAAATTAACCCAT-CGAAATTGCTTAAATCGGTTAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-
droEug1	scf7180000409463:616943-617086 +		GTTTACATCTGCTGAGTGT--TCGATTAAATACCTGTACATA-TGTTCATAGTTA-TTATCGCGGCAGTGTTAGTACGTAAACAACAACAAACCATCAGCTGACCG-GGCGGCCATAAATTAACCCAC-CAAAGTTGCTTAAATT----------AA-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------A-
dm3	chr2L:7427714-7427821 +		GTTTACATCTGACGAGTGG--GCGATTGAACGCCTAA--ATG-TG----TAGATA-GTA---CAGGAGTGTGGGTACGTAAACAACAACAAACTAACAGCTGATCG-AGCGTCCATAAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2l:7181966-7182123 +		ATAATTTATG-AAGAATTA--TTATGT----------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------------------------------------------------------------------------CCTAA--------------TAGTGGATAGAACCCAATG----------CAATCCACTTTA-AAAAACTAACTTGAAACTAAACTAGTTTTGTTTGAATATCGC--------------------------------------GCAGGTCGAAACTCAACACTAGCC------AGTCGCCGGTCACATGGAGCTACAACTTCG-
droSec2	scaffold_3:2943450-2943607 +		ATAATTTATA-ATGAATTA--TTATGT----------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------------------------------------------------------------------------CCTAA--------------TAGTGGATACAATCCAATG----------CAACCCACTTTA-AAAAACGAACTTGAAACTAAACTAGTTTTGTTTGAATATCGC--------------------------------------GCAGGTCGAAACTTAACACTAGCC------AGTCACCGGTCACATGGAGCTACAACTTCG-
droYak3	2L:5471606-5471948 -		GTTTACATCTGACAAGTGG--TCGATTGAACGCTTAA--ATG-TG----TAGATA-GTA---CCCGAGTGTGGGTAGGTAAACAACAACAAACTAACAGCTGATCG-AGCGGCCATAAATTAACCCAT-GCTAAATGCTTTCATT----------AA-ATATAACAGGTCATACAACAGGTCATCAG-AATAAGAAGTAAATGTAGTTTCCAAGAG---------------------------CGA--TATTCGCTTTAATGATGCTTCACAATGAATGCATACTTATGCA------T-TGCCAGTG----------CAACCTACTTTT-AAAATTAAACTTGAAACTAAACCAGTTTTCTTT-----------------------------------------------CCAGGTCGAAACTTACCACTAGCC------AGTCTCCGGTGGCATGGAGCTACAACTTCG-
droEre2	scaffold_4929:16346515-16346649 +		GTTTACATCTGACGAGTGG--TCGATTGAACGCCTGA--ATG-TG----TAGATA-GTA---CCGGAAAGTGGGTACGTAAACAACAACAAACTAACAGCTGATCG-AGCGGCCATAAATTAATCCAT-TCAAAATGTTTTCATT----------AA-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------T-
dp5	4_group1:4177994-4178158 +		GGGTTTTTCC-ATA--------------------------------------------------TGTGTGTGTGTGCATAA----------ACAATCAGCTGATTG-AAGAGCTAGTATGAGGCACAA-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGGGATCTCAAAGTAAAATTCACT---------------------------------ATCGATCTTCC--------------------------------------ACAGGTCGACTTTGAAAAGCAGCAGGCCTCAGTCGCTAAACGCCTGGAGCTATAATTTTG-
droPer2	scaffold_5:1084124-1084286 -		GTTTTTCCAT-A----------------------------------------------------TGTGTGTGTGTGCATAA----------ACAATCAGCTGATTG-AAGAGCTAGTATGAGGCACAA-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGGGATCTCAAAGTAAAATTCACT---------------------------------ATCGATCTTCC--------------------------------------ACAGGTCGACTTTGAAAAGCAGCAGGCCTCAGTCGCTAAACGCCTGGAGCTATAATTTTG-
droWil2	scf2_1100000004902:353472-353514 +		CCTGTGTTTGTGTGGATGT--GTGT-------------------------------GTG---TCTGTGTGTGTGTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13049:1089570-1089629 -		GTTTAAGGTCTGTATGTGT--GTCAGTGTGTG---------G-TG----TGTGTGTGTG---TGTGTGTGTGTGTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6473:13105878-13105929 -		ATGTGTGTGT-GTGTGTGT--CCATGT-----------------------------GTG---CGTGTGTGTGTGTGTGTGTATAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_269:2329-2431 +		AAAACTTTTTCACAAATTG--TA------------------------------------------------GAATACATAA----------GAAAATAACAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATATGCTCTA-AACAATTTATTTAAACTA----------------------------------------------------------------------------------------------TTTGTAATCTTAGAAAACTCTAATTTTGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GTTTACATCCTATGCGTGT--GTGATTGAAAG---------G-TG----TAGAGGTGTG---TCTGTGTGTGTGTGTGTAAACAACAACAAACAATCAGCTGATTG-ATAGGCCATAAATTATAGA----AAAATTTATTAAATTGGGTAACATTT--------------------------------------------------------------------------------------------------------------------------------------------------GTGGGGATAGTAGAACAATACTCTTTC-TAAACTTTATTTAAAATTTTATTAATTTTAAACGAAT----T--------------------------------------CCAGGTCTAATCTTAC------CCCGCCAAAGCCCCTGACAGCATGGAGCTACAACTTTG-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTAC------CCCGCCAAAGCCCCT........................	23	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACAGCATGGAGCTACA.......	19	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCCTGACAGCATGGAGCT..........	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTAC------CCCGCCAAAGCCCCTGACAGCA.................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................C------CCCGCCAAAGCCCCTGACAGCATGGA.............	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTCTAATCTTAC------CCCGCCAAA..............................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAGCCCCTGACAGC..................	18	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAAGCCCCTGACAGCATGGAGC...........	26	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCATGGAGCTACAACTTT..	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TAC------CCCGCCAAAGCCCCTGACA....................	22	1	1.00	1	1	0	0	0	0	0

droBip1

GTTTACATCCAATGCGTGT--GTGATTGAAAG---------G-TG----TAGTGACGTG---TACGTGTGTGCGTGCGTAAACAACAACAAACCAACAGCTGATTG-AGCGGCCATAAATTATTAA-----AAGTTAATCAAACTAACTAAAACTA-GT----------------------GGTTGGAAACAAGAAATTAAT------------AG---------------------------ATA--TATTATTTT----------------------------------------------------TAGTAGAAGGAT------T---------------------------------ACCCTTCTCCCAACTACCCAACAGTTTTTAGAACATTATTTTCTTATTTCTAGGTGTAATCTAACCACTAGCCCGCCAAAGCCCCTGACAGCATGGAGCTACAACTTTG-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTTTACATCGTGTGCGTGTGAGTGATTGAACACAG-A--AT------------AA-GTG---CA--GGTGTTTGTGGGTAAACAACAACAAACGATCAGCTGACGATGGCGGCCATAAATTAACCCAAAAGATATTGTTTAAAAC----------CATT----------------------TGGGGTCAAGAAGA--------------------GCAAAGGGTTTTTTAATTTAAAAATTAACGATATATTAGCATTAATAT-A-TTAACTATTAA--CTGACTTGAGATCTTGTATAGATTAATA----------TTACTTTTTTTTAATAATTAAATTTAAAATTTATCTAAAACTCTCTCCATCTTCT----------------------------------ATTAACAGGTCCAAATTAGTCAACAGTCAGCCCCAAACCTTGACCGGATGGAGCTGCAACTTCG-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTTTACATCTGATGAGTGT--GTGATTGAAGAATTCA--TTTAGT----TAGTTA-GTA---CAGGAGTGTGGGAACGTAAACAACAACAAACCGTCAGCTGATCA-AGCGGCCATAAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTTTACATCTGGCGAGAGT--GGGATTGAACCAC------CTATT----TATTTA-GTA---TGGAAGTGTGGGTACGTAAACAACAACAAACTATCAGCTGAC-----CGGCCATAAATTAACCCAT-CGAAATGGTTAAAATT----------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTTTACATCTGGTGAGTGC--GGGACTTAGCCTT------CTATA----TATTTA-GTA---CAGAAGTGTGGGTACGTAAACAACAACAAATAATCAGCTGACTG-AGCGGCCATAAATTAACCGTT-CGAAACTTATTAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTTTACATCTGCCGAGTGT--TCGATTAGACACTCGA--ATA-TGTTCCTAGTTA-GTA---TGGCAGTGTGGGTACGTAAACAACAACAAACCGTCAGCTGACCG-AGCGGCCATAAATTAACCCAT-CTAAATTGATCGAATT----------CA-T---------------------------------------------------------------------------------------------------------------------------TTTTGTGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTTTACATCTGTTGAGTGT--TCGATTAAACACCTCT--ATA-TGTTCGTAGTTA-GTA---TGGGAGTGTGGGTACGTAAACAACAACAAACCATCAGCCG-----AGCGGCCATAAATTAACCCAT-CGAAATTGCTTAAATCGGTTAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTTTACATCTGCTGAGTGT--TCGATTAAATACCTGTACATA-TGTTCATAGTTA-TTATCGCGGCAGTGTTAGTACGTAAACAACAACAAACCATCAGCTGACCG-GGCGGCCATAAATTAACCCAC-CAAAGTTGCTTAAATT----------AA-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------A-	Size	Hit Count	Total Norm	Total
No Reads

dm3

GTTTACATCTGACGAGTGG--GCGATTGAACGCCTAA--ATG-TG----TAGATA-GTA---CAGGAGTGTGGGTACGTAAACAACAACAAACTAACAGCTGATCG-AGCGTCCATAAATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.TTTACATCTGACGAGTGG--GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................ACAACAAACTAACAGCTGATC..............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GTA---CAGGAGTGTGGGTACGTAAA.....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ACAAACTAACAGCTGATCG-AGCGT.......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................CAAACTAACAGCTGATCG-AGCG........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TAGATA-GTA---CAGGAGTGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AACAAACTAACAGCTGATCG-............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAACTAACAGCTGATCG-AGCGTCC.....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AACTAACAGCTGATCG-AGCGT.......................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ACATCTGACGAGTGG--GCGATTGAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AA--ATG-TG----TAGATA-GTA---CAGGAGTGT................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGTGTGGGTACGTAAACAACAACAAACT.........................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAACTAACAGCTGATCG-AGCG........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droSim2

ATAATTTATG-AAGAATTA--TTATGT----------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------------------------------------------------------------------------CCTAA--------------TAGTGGATAGAACCCAATG----------CAATCCACTTTA-AAAAACTAACTTGAAACTAAACTAGTTTTGTTTGAATATCGC--------------------------------------GCAGGTCGAAACTCAACACTAGCC------AGTCGCCGGTCACATGGAGCTACAACTTCG-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCC------AGTCGCCGGTC....................	18	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCC------AGTCGCCGGTCACATGGAGC...........	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGTCACATGGAGCTACAACTT...	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTCGAAACTCAACACTAGCC------...............................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCC------AGTCGCCGGTCACATGGAG............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTCGAAACTCAACACT.........................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTAGCC------AGTCGCCGG......................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAACACTAGCC------AGTCGCCGGTC....................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCAACACTAGCC------AGTCGCCGGT.....................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACTAGCC------AGTCGCCGGT.....................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCC------AGTCGCCGGTCACATGGAG............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTCGAAACTCAACACTAGCC------AGT............................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATGGAGCTACAACTTC..	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTCAACACTAGCC------AGTCGCCGGT.....................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTAGCC------AGTCGCCGGT.....................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTCAACACTAGCC------AGTCGCCGGC.....................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATAATTTATA-ATGAATTA--TTATGT----------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------------------------------------------------------------------------------CCTAA--------------TAGTGGATACAATCCAATG----------CAACCCACTTTA-AAAAACGAACTTGAAACTAAACTAGTTTTGTTTGAATATCGC--------------------------------------GCAGGTCGAAACTTAACACTAGCC------AGTCACCGGTCACATGGAGCTACAACTTCG-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCACCGGTCACATGGAGC...........	20	1	2.00	2	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAACTTAACACTAGCC------AGTCACC........................	25	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CC------AGTCACCGGTCACATGGAGCT..........	23	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCC------AGTCACCGGTCACATGGAGC...........	27	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGTCACATGGAGCT..........	18	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTAGCC------AGTCACCGGT.....................	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGTCACATGGAGCTACAACT....	24	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCGGTCACATGGAGCTACAACT....	26	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCACCGGTCACATGGA.............	18	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTCGAAACTTAACACTAGCC------...............................	23	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCC------AGTCACCGGTCACATGGAGCTACA.......	27	1	1.00	1	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGTCACATGGAGCTACA.......	20	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCC------AGTCACCGGTCACATGGAGCT..........	24	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTAACACTAGCC------AGT............................	18	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCC------AGTCACCGGTCACATGGA.............	22	1	1.00	1	1	0	0	0

droYak3

GTTTACATCTGACAAGTGG--TCGATTGAACGCTTAA--ATG-TG----TAGATA-GTA---CCCGAGTGTGGGTAGGTAAACAACAACAAACTAACAGCTGATCG-AGCGGCCATAAATTAACCCAT-GCTAAATGCTTTCATT----------AA-ATATAACAGGTCATACAACAGGTCATCAG-AATAAGAAGTAAATGTAGTTTCCAAGAG---------------------------CGA--TATTCGCTTTAATGATGCTTCACAATGAATGCATACTTATGCA------T-TGCCAGTG----------CAACCTACTTTT-AAAATTAAACTTGAAACTAAACCAGTTTTCTTT-----------------------------------------------CCAGGTCGAAACTTACCACTAGCC------AGTCTCCGGTGGCATGGAGCTACAACTTCG-	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................ATAAGAAGTAAATGTAGTTTCCAAGAG---------------------------C...................................................................................................................................................................................................................................	28	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTACCACTAGCC------AGTCTCCGGTGGC..................	28	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AGTCTCCGGTGGCATGGAGCT..........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCACTAGCC------AGTCTCCGGTGGC..................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACTAGCC------AGTCTCCGGTGGCATG...............	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CTTTAATGATGCTTCACA.......................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCC------AGTCTCCGGTGGCATGGAGCT..........	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................CAACAAACTAACAGCTGATCG-AGC.........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCC------AGTCTCCGGTGGCATGGAGCTAC........	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......ATCTGACAAGTGG--TCGATTGAACGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCGGTGGCATGGAGC...........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAACTTACCACTAGCC------AGT............................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTCCGGTGGCATGGAGCT..........	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEre2

GTTTACATCTGACGAGTGG--TCGATTGAACGCCTGA--ATG-TG----TAGATA-GTA---CCGGAAAGTGGGTACGTAAACAACAACAAACTAACAGCTGATCG-AGCGGCCATAAATTAATCCAT-TCAAAATGTTTTCATT----------AA-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------T-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dp5

GGGTTTTTCC-ATA--------------------------------------------------TGTGTGTGTGTGCATAA----------ACAATCAGCTGATTG-AAGAGCTAGTATGAGGCACAA-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGGGATCTCAAAGTAAAATTCACT---------------------------------ATCGATCTTCC--------------------------------------ACAGGTCGACTTTGAAAAGCAGCAGGCCTCAGTCGCTAAACGCCTGGAGCTATAATTTTG-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTTTGAAAAGCAGCAGGCCTCAGT............................	27	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTAAACGCCTGGAGCT..........	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGCCTCAGTCGCT........................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGCCTCAGTCGCTAAA.....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGCCTCAGTCGCTAAACGCCTGGAG............	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAACGCCTGGAGCTATA.......	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCGACTTTGAAAAGCAGCAG....................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAAGCAGCAGGCCTCAGT............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGCAGGCCTCAGT............................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCGACTTTGAAAAGCAGCAGG...................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCGACTTTGAAAAGCAG.......................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCTAAACGCCTGGAGCTATAA......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGCCTCAGTCGCTA.......................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTAAACGCCTGGAGCTATAATTTTG-	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTTTGAAAAGCAGCAGGCCTCAG.............................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCTAAACGCCTGGAG............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GTTTTTCCAT-A----------------------------------------------------TGTGTGTGTGTGCATAA----------ACAATCAGCTGATTG-AAGAGCTAGTATGAGGCACAA-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGGGATCTCAAAGTAAAATTCACT---------------------------------ATCGATCTTCC--------------------------------------ACAGGTCGACTTTGAAAAGCAGCAGGCCTCAGTCGCTAAACGCCTGGAGCTATAATTTTG-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAGTCGCTAAACGCCT................	19	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTCGACTTTGAAAAGCAGC......................................	22	1	2.00	2	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCTAAACGCCTGGAGCTA.........	22	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAGCAGCAGGCCTCA..............................	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGACTTTGAAAAGCAGCAGGC..................................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAACGCCTGGAGCTAT........	19	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTAAACGCCTGGAGCT..........	20	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGGCCTCAGTCGCTAAAC....................	23	1	1.00	1	0	1	0	0	0	0

droWil2

CCTGTGTTTGTGTGGATGT--GTGT-------------------------------GTG---TCTGTGTGTGTGTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

GTTTAAGGTCTGTATGTGT--GTCAGTGTGTG---------G-TG----TGTGTGTGTG---TGTGTGTGTGTGTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

ATGTGTGTGT-GTGTGTGT--CCATGT-----------------------------GTG---CGTGTGTGTGTGTGTGTGTATAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................T-----------------------------GTG---CGTGTGTGTGTGTGTGTGTA.....................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droGri2

AAAACTTTTTCACAAATTG--TA------------------------------------------------GAATACATAA----------GAAAATAACAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATATGCTCTA-AACAATTTATTTAAACTA----------------------------------------------------------------------------------------------TTTGTAATCTTAGAAAACTCTAATTTTGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_740

scaffold_12916:15335982-15336132 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads