ID:

dan_707

 Coordinate:

scaffold_12916:13844247-13844397 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.3 -9.6 -9.6

Flybase annnotation

exon [dana_GLEANR_16501:3]; CDS [Dana\GF15737-cds]; intron [Dana\GF15737-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GACGAGGATGTGGAAGAGCCTCAGGCGGAGCCTAAGGATTCCAAAGCTGGGTAAGATGGATCCGCTTTCTTTTGACAAGGATTCCTGTTTCATTGCTCGAATTTGTATTTATGACTTGTTTTGTTTTTCGTGCGTTATATTTTAATTCCAAAAAAATAAAAAACCAAGAAAAGAACGCAAGAGACATATATTAACTCTAGTTTTTAATTGTACACATACTTCGTTCCTTAATAAATAATATTGTATGATTA
************************************************************************************************..................(((((....((((((.((.(((.((((((.........))))))...))))).))))))...)))))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 M058
embryo
 V039
embryo
 V055
head
................................TAACGATTCGAAAGCTGGG........................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 1
................................................................................................TCGAATTTGTATTTATGACTTGTTTTGT............................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...GAGGATGTGGAAGAGCCTCAGGCGG............................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.........GTGGAAGAGCCTCAGGCGGAGCCT.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
......................AGGCGGAGCCTAAGGATTC.................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
.ACGAGGATGTGGAAGAGCCT...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0
...........................................................................................................................................................ATAAAAAACCAAGAAAAGAGCGCA........................................................................ 24 1 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................AAGAAAAGAACGCAAGAGAC.................................................................. 20 0 1 1.00 1 0 1 0 0 0
...............GAGCCTCAGGCGGAGCCTAAGGA..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................CGCAAGAGAGTTATATTGAC........................................................ 20 3 2 0.50 1 0 0 0 1 0
...........................................................................................................................................................ATAAAAAACCAAAAAAACAACGCAA....................................................................... 25 2 2 0.50 1 0 0 1 0 0
......................................................................................................................................................AAAAAATAAAAAACCAAGAAGA............................................................................... 22 1 2 0.50 1 0 0 1 0 0
................................................................CTTTCTGTTCACACGGATTCC...................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0
........TGTGGAAGAGCCTCAACCG................................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 1 0
........................................................................................................................................................AAAAAACAAAGCCAAGAAAAGAAC........................................................................... 24 3 10 0.20 2 0 0 2 0 0
........................................................................................................................................................GAAATAAAGACCCAAGAAAAGAA............................................................................ 23 3 7 0.14 1 0 0 1 0 0
..............................................................................................................................................................AAAAACCAAGAAAAGATCAAAAGA..................................................................... 24 3 7 0.14 1 0 0 1 0 0
.....................................................................................................................................................AAAAAAAGAAAAAACCAAGAA................................................................................. 21 1 11 0.09 1 0 0 1 0 0
......................................................................................................................................................AAAAAAGAAAAAACCAAGAA................................................................................. 20 1 15 0.07 1 0 0 1 0 0
.....................................................................................................................................................AAAAATATAAAAAACCAAGA.................................................................................. 20 1 15 0.07 1 0 0 1 0 0
...........................................................................................................................................................AAAAAAAACCAAGGAAAGAACAC......................................................................... 23 3 17 0.06 1 0 0 1 0 0
.......................................................................................................................................................AAAAAGAAAAAACCAACAAAAGA............................................................................. 23 2 18 0.06 1 0 0 1 0 0
..............................................................................................................................................................AAAAACCAAGGAGAGAAC........................................................................... 18 2 20 0.05 1 0 0 1 0 0
.............................................................................................................................................................AACAAACCAGTAAAAGAACG.......................................................................... 20 3 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................................AAAGAACGCAAGAAACGGA............................................................... 19 3 20 0.05 1 0 0 1 0 0
...............................................................................................................TGACTAGTATTCTTTTTCGT........................................................................................................................ 20 3 20 0.05 1 0 0 0 1 0
....................................................................................................................................................................AAAGAAAAGAACACAAGAGA................................................................... 20 2 20 0.05 1 0 0 1 0 0
................................................................................................................................................................AACCCAAGAAAAGAACAC......................................................................... 18 2 20 0.05 1 0 0 1 0 0
...........................................................................................................................................................AAAAAGAACCAAGAAAAGAA............................................................................ 20 2 20 0.05 1 0 0 0 1 0
.....................................................................................................................................................AAAAAAAGAACAAACCAAGAA................................................................................. 21 2 20 0.05 1 0 0 1 0 0
......................................................................................................................................................................AGAGAGGAAAGCAAGAGACA................................................................. 20 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

CTGCTCCTACACCTTCTCGGAGTCCGCCTCGGATTCCTAAGGTTTCGACCCATTCTACCTAGGCGAAAGAAAACTGTTCCTAAGGACAAAGTAACGAGCTTAAACATAAATACTGAACAAAACAAAAAGCACGCAATATAAAATTAAGGTTTTTTTATTTTTTGGTTCTTTTCTTGCGTTCTCTGTATATAATTGAGATCAAAAATTAACATGTGTATGAAGCAAGGAATTATTTATTATAACATACTAAT
******************************************************************..................(((((....((((((.((.(((.((((((.........))))))...))))).))))))...)))))....************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 V105
male body		 M058
embryo
 V055
head
 V039
embryo
.......................................AGATTACGACCCATTCTAC................................................................................................................................................................................................. 19 2 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................................AAAATGAACTAGTGTATGAAG............................. 21 3 9 1.11 10 0 6 4 0 0 0
...................................................................................................................................................................................................................TGTGTATGAAGAAAGGCATAAT.................. 22 3 4 0.25 1 0 0 0 0 1 0
.......................................................CACCTAGGCGAACGAAAA.................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 1 0 0
............................................................................................................................................................................................................ATTAACTAGTGTATGAAG............................. 18 2 9 0.11 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................CCAAGGAGTTATTTATTAT........... 19 2 9 0.11 1 0 0 0 1 0 0
..................................................................................................................................................................TGGTTCTTTTCTTGGGAT....................................................................... 18 2 14 0.07 1 0 0 0 0 1 0
..................................................................................AGGAAAAACAAACGAGCTTAA.................................................................................................................................................... 21 3 19 0.05 1 0 0 0 0 0 1
........................................................................................................................AACAAAAAGAACGCAAAATAA.............................................................................................................. 21 2 20 0.05 1 0 0 0 1 0 0
.................................................................................................................CGAACAAAACAAAAACCAC....................................................................................................................... 19 2 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:13844197-13844447 + dan_707 GACGAGGATGTGGA------------------A---GAG----------------------------CCTCAGGCGGAGCCTAAGGATTCCAAAGCTGGGTAAGATGG-ATCCGCTTTCT------------------TTTGAC-AAGGATTCCTGTTTC-------A-TTGCTCGAATTT---------------GTATTTATGACTTGTTTT-------G-TTTT-------TC-----------------GTGCGTTA-TATTT----------TAATTCC-AA--AAAAATAAAAAACCAAGA-----------AAAGAACGCAAGA---GACATATATTAACTCTAGTTTTTAATTGTACACA--------TA-CTTCGTTCCTTAATAAATAATA--TTGTAT-----GATT--A
droBip1 scf7180000396535:807046-807288 + GACGAGGATGTGGA------------------A---GAG----------------------------CCTCAGGCGGAGCCTAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTTTCT------------------TTTGAC-AAGGATTCCTGTTAT-------A-TTGCTCGAATTT---------------GTATTTATGACTTTTTTT-------G-TTTT-------TC-----------------GTGCGTTT-TATTT----------TGATTCC-----AAAAACAA-------------AAA------ATAAACGCAAGA---GACATATATTAACTCTAGTTTTTAATTGTACACA------CACA-CTTCGTTCCTTAATAAATAATA--CTGTAT-----GATT--C
droKik1 scf7180000302677:113599-113893 - GACGAGGATGTGGATG------------TGGAT---GAG----------------------------TCTCAGACGCAACCCAAGGATTCCAAAGATGGGTAAGAAGG-GTCCCCCCTCTCTCTATTTCTCTTTCTAAATTGAA-AAGTT-TTCCGTCTT-------A-TTGCTCGAATTT-------------TTGTATTTATAATCTGTTTT-------G-TTTCCC-----AC-----------------GTGCTTTT-CGTTTTGT-TT--TGTCATAAA-----AAA----A--CAACAAAAAA-AACAAATTGTAAAGAGAAAGA---AATATAAATTAACTCTAGCTTTTAATTGTACACACCAACACACA-CTTTGTTCCTTAATAAATAATA--TTGTAT-----AATT--A
droFic1 scf7180000453838:207544-207801 + GATGACGATGTGGAGG------------AGGAG---GAG----------------------------CCACAGGCGCCGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTCACT------------------AATGAC-GAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATGATTTGTTTT-------A-TTTCCT-----CC-----------------GGGCCTTT-TCTTTTGT-TT--TTTCATAAG-----AAA----A-------------ACAATACCAAAAAGCGCAAGC---TACACACATTAACTTTAGCTTTTAATTGTAAATC--------TT-CTTTGTTCCTTAATAAATAATA--TTGTAT-----GATA--A
droEle1 scf7180000491186:3067224-3067477 + GATGACGATGTGGACG------------AAGAG---GAT----------------------------CCGCAGACGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-GTCCGCTCAGT------------------AATGAC-TAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATGATTTGTTTA-------G-TTTCCG-----TC-----------------GAGCATTT-CGTTTTGT-TT--TTTCATTGA-----AAA----A-------------ACAATATTGCAAAGCGCAAGA-------TACATTAACTCTAGCTTTTAATTGTAAAAC--------CT-CTTTGTTCCTTAATAAATAATA--TTGTAT-----GATT--A
droRho1 scf7180000779234:182189-182447 - GATGACGATGTCGACG------------AAGAG---GAT----------------------------CCGCAGACGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTCAGT------------------TATGAC-TAGGATTCCTGCATT-------G-TTGCTCGAATTT---------------GTATTTATGATTTGTTTA-------A-TTTCTG-----TC-----------------GAGCTTTT-TGTTTTGT-TT---TTCTTTTGGAA--AAA----A-------------ACAATATTGAAAAGCGCAAGA---TACATACATTAACTCTAGCTTTTAACTGTAAACC---------T-CTTTGTTCCTTAATAAATAATA--TTGTAT-----GATT--A
droBia1 scf7180000301468:112497-112754 + GAGGACGATGTGGAGG------------AAGAG---GAG----------------------------CCGCAAACGCAGCCCAAGGATTCCAAAGATGGGTAAGAAGG-ATTCGCTCGGT------------------AATGAC-GAGGATTCCCGCTTT-------A-TTGCTCGAATTT---------------GTATTTATAATTTGTTTT-------A-TTTCCG-----TC-----------------GGCGTTTA-AGTTGTAT-TT--TTTCATACA-----AAA----A-------------GCAATATTGAATAGCGCCAGT---TACATAAATTAACTCTAGCTTTTAATTGTAAAAC--------CT-CTTTGTTCCTTAATAAATAATA--CTGTAT-----GTGT--A
droTak1 scf7180000415667:488132-488367 - GAGGACGATGTGGAGG------------AGGAG---GAG----------------------------CCGCAGACGCAGCCCAAGGATTCCAAAGATGGGTAAGAAGG-ATCCGCTCAGT------------------AATGAC-GAGGATTCCCGCTTT-------A-TTGCTCGAATTT---------------GTATTTATGATTTGTTTT-------TATTTCCG-----TC-----------------GG-CTTGTAAGTTATGT-TT--TTGCATACC-----AAG---CA-------------AC----------------------------AATTAACTCTAGCTTTTAATTGTAAAAT--------CTCGTTTGTTCCTTAATAAATAATA--TTGTAT-----GATT--A
droEug1 scf7180000409554:4904797-4905043 - GAGGACGATGTGGAGG------------AAGAG---GAG----------------------------CCGCAGGTGCAACCCAAGGATTCCAAAGCAGGGTAAGAAGG-AT----------------------------ATGAC-GAGGATTTCTGCTTT-------A-TTGCTCGAATTT---------------TTATTTATGATTTGTTTT-------A-CGTCCG-----CC-----------------GATCTTTT--TTATTGT-TT--TTTTATAAA-----AAG---AA-------------ACAATATTGAATAGTGCAAGA---TAAATTCATTAACTCTAGCTTTTAATTGTAAAAC--------TT-ATTTGTTCCTTAATAAATAATA--TTGTAT-----GATC---
dm3 chr2L:10011853-10012109 + GAAGACGATGTGGATG------------AAGAA---GAA----------------------------ACGAAGGCGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCAGT------------------AATGAC-CAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATAATTTCTTTT-------A-TTTCCG-----TC-----------------GAACTTTT-GGTTGTATGTT--TTTCATACA-----CTA----A-------------ATCATATTGAATAGCGCAAAA---GACATACATTAACTTTAGCTTTTAATTGTAAATC-----------CTTTGTTCCTTAATAAATATTA--TTGTAT-----AATT--A
droSim2 2l:9702525-9702781 + dsi_24929 GAAGACGATGTGGATG------------AAGAA---GAA----------------------------CCGAAGACGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCAGT------------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATAATTTCTTTT-------A-TTTCCG-----TC-----------------GAACTTTT-GGTTGTATGTT--TTTCATACA-----CTA----A-------------ACCATATTGAATAGCACAAAA---GACACACATTAACTCTAGCTATTAATTGTAAATC-----------CTTTGTTCCTTAATAAATATTA--TTGTAT-----AATT--A
droSec2 scaffold_3:5451175-5451431 + GAAGACGATGTGGATG------------AAGAA---GAA----------------------------CCGAAGACGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCAGT------------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATAATTTCTTTA-------A-TTTCCG-----TC-----------------GAACTTTT-GGTTGTATGTT--TTTCATACA-----CTA----A-------------ACCATATTGAATAGCACAAAA---GACATACATTAACTCTAGCTATTAATTGTAAATC-----------CTTTGTTCCTTAATAAATATTA--TTGTAT-----AATT--A
droYak3 2L:12695442-12695698 + GAAGACGATGTGGATG------------ATGAA---GAA----------------------------CCGAAGACGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-AACCGCTCAGT------------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATAATTTCTTAT-------A-TTTCCG-----TC-----------------GAACCTTT-GGTTGTATGTT--TTTCATACA-----GTA----A-------------ACCATATTGAATAGCGCAAAA---GACATACATTAACTTTAGCTTTTAATTGTAAAAC-----------TTTTGTTCCTTAATAAATAATA--TTGTAT-----AATT--A
droEre2 scaffold_4929:10625382-10625643 + GAAGACGATGTGGATG------------AAGAA---GAA----------------------------CCGAAGACGCAGCCTAAGGATTCCAAAGCTGGGTAAGAAGG-AACCGCTTAGT------------------AATGAC-CAGGATTCCTGCTAT-------A-TTGCTCGAATTT---------------GTATTTATAATTTCTTAT-------A-TTTCCG-----TC-----------------GAAGTTTT-GGTTGTATGTT--TTTCATACAGTAACCTA----A-------------ACCATATTGAATAACGCAAAA---GACATACATTAACTCTAGCTTTTAATTGTAAAAC-----------TTTTGTTCCTTAATAAATAATA--TTGTAT-----AATT--A
dp5 4_group3:168651-168892 - GACGACGA------------------------G---GAG----------------------------CCGCAGGCTCAGCCCGAGGAGTCCAAAGCTGGGTAAGCTGGGGTCCGCTTTTT------------------ATTGAC-AAGGAATC--GATGT-------G-TTGCTCGAATTT-------------A-TTATTTATGATTGTGATG-------A-CGT-TT-----TC-----------------GGGTTTTT-TTTTGTGTTTG--TTTCCTTCATAAA-AAA---AA-------------AC------AAATTGCGCAAAC---TACATGCATTAAAGTTAGCTCATAACTGTATA-C-----------TTTTGTTCCTTAATAAATATTA--CTGTAT-----AATT--T
droPer2 scaffold_1:1642652-1642892 - GACGACGA------------------------G---GAG----------------------------CCGCAGGCTCAGCCCGAGGAGTCCAAAGCTGGGTAAGCTGGGGTCCGCTTTTT------------------ATTGAC-AAGGAATCTTGATGT-------G-TTGCTCGAATTT-------------A-TTATTTATGATTGTGATG-------A-CGT-TT-----TC-----------------GGGTTTTT--TTTGTGTTTG--TTTCCTTCATAAA-A-A----A-------------ACA------AATTGCGCAAAC---TACATGCATTAAAGTTAGCTCATAACTGTATA-C-----------TTTTGTTCCTTAATAAATATTA--CTGTAT-----AATT--T
droWil2 scf2_1100000004752:19600-19935 + GATGAGGATGTAGATGTGTCCGAGCAAGATCAG---GAA-------CCAGAGCAGGAGCAGAGTGAACAGCAGACGAATTCCAAGGACTCTAAAGCTGGGTAAGCTGGCCGTCGCTTTCT------------------ATTGACGAACGAATCTCG-----------A-TTGCTCGAATTTTGTTTTATTTTTTA-TCACTTTTGATTTTTATT-------T-CCT-TTTTTTTT---GTTTTCTCACATTTTGG-TTTTT-TTTTGCGTTTGCCTCTCATAAA-----ATT----AAACAGCAAAAAAAGAGAAGAAGAAAAGTGCAAG-------ATAAATTAACTTTAGTATATAATTGTATAAA---------A-TTATGTTCCTTAATAAATAATA--TTATATCGATTGATC--G
droVir3 scaffold_12723:3927607-3927858 - dvi_1574 GACGAAGATGTGGAAG------------GATCG---GAG------ACTTTACCGCCACTAAGGGAT-GCAGCGGCGCAAGCCAAGGATACCAAAGCTGGGTAAGCTGG---CCGCTTGTT------------------TTTACCGAACGAACCTCGTTTC-TAAGGCATTTGCTCGAATTT---------------TAACCTATGATCTATTG---GCCTTGA--------TTTT---GTTTATTCGCAATT--------------------------------------------------------------------------CAAGT-------CAAAATAACGTTAGCTGTTAATTGTGTAAA---------T-TTCTGTTCCTTAATAAATTATAAACTGTAC-----GATTTCA
droMoj3 scaffold_6500:14806725-14806986 + GACGACGACGAAGATATAGCTGAGGGCGTTGATAAGGAA----------------------------CCAAAGGCGCAAGCCAAGGATACCAAAGTTGGGTAAGCAGG---CCGCTTATT-T-----TGA-TCTA---TTTAACGAACGAATCTCGTTTGCTATGGCATTTGCTCGAATTT---------------TAACATATAATTTATTG---GGCTTGA--------TTTT---GTTAACTCGCAATT--------------------------------------------------------------------------CAAGTAACTTCTTATAATAACTCTAGCTGTTAATTGTGTGAA---------T-TTATGTTCCTTAATAAATTATAAACTTTTT-----GAATTCA
droGri2 scaffold_15252:3727473-3727752 + GAGGATGATGATGAGGCGGC---AGATGGTGAG---GGAGCGGAGACCTCACCGCCGCAAGCGGAT-ACAATGGCGCAAGCCAAGGATACCAAAGCTGGGTAAGCAGG-A--CGCTTATT-------TGA-TTTTT--GAAGCG-AACGAATCTCGTTTTTCAAAGCA-TTGCTCGAATTT---------------GAACGTATAATATATTATTGGCCTTGA--------GTTTGTTGTTAACACGCAATT--------------------------------------------------------------------------CAAGT-------CAGCTTAACTTTAGATGTTACCTGTGTACA---------T-TTCTGTTCCTTAATAAATTATATATTGTAT-----GATTTCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GACGAGGATGTGGA------------------A---GAG----------------------------CCTCAGGCGGAGCCTAAGGATTCCAAAGCTGGGTAAGATGG-ATCCGCTTTCT------------------TTTGAC-AAGGATTCCTGTTTC-------A-TTGCTCGAATTT---------------GTATTTATGACTTGTTTT-------G-TTTT-------TC-----------------GTGCGTTA-TATTT----------TAATTCC-AA--AAAAATAAAAAACCAAGA-----------AAAGAACGCAAGA---GACATATATTAACTCTAGTTTTTAATTGTACACA--------TA-CTTCGTTCCTTAATAAATAATA--TTGTAT-----GATT--ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................TCGAATTT---------------GTATTTATGACTTGTTTT-------G-T.....................................................................................................................................................................................................2811.001100000
...GAGGATGTGGA------------------A---GAG----------------------------CCTCAGGCGG........................................................................................................................................................................................................................................................................................................................................................2511.001000010
.........GTGGA------------------A---GAG----------------------------CCTCAGGCGGAGCCT...................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......................................................................AGGCGGAGCCTAAGGATTC...........................................................................................................................................................................................................................................................................................................................................1911.001100000
.ACGAGGATGTGGA------------------A---GAG----------------------------CCT...............................................................................................................................................................................................................................................................................................................................................................2011.001001000
...............................................................................................................................................................................................................................................................................................................AAGA-----------AAAGAACGCAAGA---GAC....................................................................................2011.001000010
....................................GAG----------------------------CCTCAGGCGGAGCCTAAGGA..............................................................................................................................................................................................................................................................................................................................................2311.001100000
droBip1
GACGAGGATGTGGA------------------A---GAG----------------------------CCTCAGGCGGAGCCTAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTTTCT------------------TTTGAC-AAGGATTCCTGTTAT-------A-TTGCTCGAATTT---------------GTATTTATGACTTTTTTT-------G-TTTT-------TC-----------------GTGCGTTT-TATTT----------TGATTCC-----AAAAACAA-------------AAA------ATAAACGCAAGA---GACATATATTAACTCTAGTTTTTAATTGTACACA------CACA-CTTCGTTCCTTAATAAATAATA--CTGTAT-----GATT--CSizeHit CountTotal NormTotal
No Reads
droKik1
GACGAGGATGTGGATG------------TGGAT---GAG----------------------------TCTCAGACGCAACCCAAGGATTCCAAAGATGGGTAAGAAGG-GTCCCCCCTCTCTCTATTTCTCTTTCTAAATTGAA-AAGTT-TTCCGTCTT-------A-TTGCTCGAATTT-------------TTGTATTTATAATCTGTTTT-------G-TTTCCC-----AC-----------------GTGCTTTT-CGTTTTGT-TT--TGTCATAAA-----AAA----A--CAACAAAAAA-AACAAATTGTAAAGAGAAAGA---AATATAAATTAACTCTAGCTTTTAATTGTACACACCAACACACA-CTTTGTTCCTTAATAAATAATA--TTGTAT-----AATT--ASizeHit CountTotal NormTotal
No Reads
droFic1
GATGACGATGTGGAGG------------AGGAG---GAG----------------------------CCACAGGCGCCGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTCACT------------------AATGAC-GAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATGATTTGTTTT-------A-TTTCCT-----CC-----------------GGGCCTTT-TCTTTTGT-TT--TTTCATAAG-----AAA----A-------------ACAATACCAAAAAGCGCAAGC---TACACACATTAACTTTAGCTTTTAATTGTAAATC--------TT-CTTTGTTCCTTAATAAATAATA--TTGTAT-----GATA--ASizeHit CountTotal NormTotal
No Reads
droEle1
GATGACGATGTGGACG------------AAGAG---GAT----------------------------CCGCAGACGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-GTCCGCTCAGT------------------AATGAC-TAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATGATTTGTTTA-------G-TTTCCG-----TC-----------------GAGCATTT-CGTTTTGT-TT--TTTCATTGA-----AAA----A-------------ACAATATTGCAAAGCGCAAGA-------TACATTAACTCTAGCTTTTAATTGTAAAAC--------CT-CTTTGTTCCTTAATAAATAATA--TTGTAT-----GATT--ASizeHit CountTotal NormTotal
No Reads
droRho1
GATGACGATGTCGACG------------AAGAG---GAT----------------------------CCGCAGACGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTCAGT------------------TATGAC-TAGGATTCCTGCATT-------G-TTGCTCGAATTT---------------GTATTTATGATTTGTTTA-------A-TTTCTG-----TC-----------------GAGCTTTT-TGTTTTGT-TT---TTCTTTTGGAA--AAA----A-------------ACAATATTGAAAAGCGCAAGA---TACATACATTAACTCTAGCTTTTAACTGTAAACC---------T-CTTTGTTCCTTAATAAATAATA--TTGTAT-----GATT--ASizeHit CountTotal NormTotal
No Reads
droBia1
GAGGACGATGTGGAGG------------AAGAG---GAG----------------------------CCGCAAACGCAGCCCAAGGATTCCAAAGATGGGTAAGAAGG-ATTCGCTCGGT------------------AATGAC-GAGGATTCCCGCTTT-------A-TTGCTCGAATTT---------------GTATTTATAATTTGTTTT-------A-TTTCCG-----TC-----------------GGCGTTTA-AGTTGTAT-TT--TTTCATACA-----AAA----A-------------GCAATATTGAATAGCGCCAGT---TACATAAATTAACTCTAGCTTTTAATTGTAAAAC--------CT-CTTTGTTCCTTAATAAATAATA--CTGTAT-----GTGT--ASizeHit CountTotal NormTotal
No Reads
droTak1
GAGGACGATGTGGAGG------------AGGAG---GAG----------------------------CCGCAGACGCAGCCCAAGGATTCCAAAGATGGGTAAGAAGG-ATCCGCTCAGT------------------AATGAC-GAGGATTCCCGCTTT-------A-TTGCTCGAATTT---------------GTATTTATGATTTGTTTT-------TATTTCCG-----TC-----------------GG-CTTGTAAGTTATGT-TT--TTGCATACC-----AAG---CA-------------AC----------------------------AATTAACTCTAGCTTTTAATTGTAAAAT--------CTCGTTTGTTCCTTAATAAATAATA--TTGTAT-----GATT--ASizeHit CountTotal NormTotal
No Reads
droEug1
GAGGACGATGTGGAGG------------AAGAG---GAG----------------------------CCGCAGGTGCAACCCAAGGATTCCAAAGCAGGGTAAGAAGG-AT----------------------------ATGAC-GAGGATTTCTGCTTT-------A-TTGCTCGAATTT---------------TTATTTATGATTTGTTTT-------A-CGTCCG-----CC-----------------GATCTTTT--TTATTGT-TT--TTTTATAAA-----AAG---AA-------------ACAATATTGAATAGTGCAAGA---TAAATTCATTAACTCTAGCTTTTAATTGTAAAAC--------TT-ATTTGTTCCTTAATAAATAATA--TTGTAT-----GATC---SizeHit CountTotal NormTotal
No Reads
dm3
GAAGACGATGTGGATG------------AAGAA---GAA----------------------------ACGAAGGCGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCAGT------------------AATGAC-CAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATAATTTCTTTT-------A-TTTCCG-----TC-----------------GAACTTTT-GGTTGTATGTT--TTTCATACA-----CTA----A-------------ATCATATTGAATAGCGCAAAA---GACATACATTAACTTTAGCTTTTAATTGTAAATC-----------CTTTGTTCCTTAATAAATATTA--TTGTAT-----AATT--ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.............................................................................................................................................................................................................................................................................................................................................................................................TTGTTCCTTAATAAATATTA--TTGTAT-----.......2612.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CCAAGGATTCCAAAGCTGG..................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................GAAGGCGCAGCCCAAGGA..............................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................TTT-------A-TTTCCG-----TC-----------------GAACTTTT-GGTT...........................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000
...................................................................................................................................................................................................................................................................................................................................GCGCAAAA---GACATACATTAACTTTAGCT...................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................................................................................................................................................................................................TATTGAATAGCGCAAAA---GACATACATT.............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................TATAATTTCTTTT-------A-TTTCCG-----T..........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
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..........TGGATG------------AAGAA---GAA----------------------------ACGA..............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ACCGCTCAGT------------------AATGAC-CAGGATT.............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........TGTGGATG------------AAGAA---GAA----------------------------ACGAAGGCGA........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................ATATTGAATAGCGCAAAA---GACAT..................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TA----A-------------ATCATATTGAATAGCGCAAAA---GACA...................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................GAA---GAA----------------------------ACGAAGGCGCAGCCCAAGG...............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TC-----------------GAACTTTT-GGTTGTATGTT--..................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................AGCCCAAGGATTCCAAAGCTGGT.................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................AACCGCTCAGT------------------AATGAC-CAGGATT.............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TCCAAAGCTGGGTAAGACGG-AACCGC..................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TGAATAGCGCAAAA---GACATACATTAACT.........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................GGGTAAGACGG-AACCGCTC................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
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.............................................................................................................................................................................................................................A-TTTCCG-----TC-----------------GAACTTTT-GGTTGTATGT.....................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................A-TTTCCG-----TC-----------------GAACTTTT-GGTT...........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................TTT---------------GTATTTATAATTTCTTTT-------A-TT....................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................CTTT-------A-TTGCTCGAATTT---------------GTATTTATAATT.....................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................T-------A-TTGCTCGAATTT---------------GTATTTATAAT......................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................GGATTCCAAAGCTGGGTAAGACGG-A.......................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TAATTGTAAATC-----------CTTTGTTCCTTA..............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TT-------A-TTTCCG-----TC-----------------GAACTTTT-GGTTGTA........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................AGAA---GAA----------------------------ACGAAGGCGC........................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ACGG-AACCGCTCAGT------------------AATGAC-CAGGA...............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CAAGGATTCCAAAGCTGG..................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
.AAGACGATGTGGATG------------AAGAA---.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GATG------------AAGAA---GAA----------------------------ACGAAGGC..........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................T-------A-TTGCTCGAATTT---------------GTATTTATAATT.....................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TTTTAATTGTAAATC-----------CTTTGTTCCT................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TG------------AAGAA---GAA----------------------------ACGAAGGCGCAGCCCAA.................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................AGCTGGGTAAGACGG-AACCGCTCA...............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............ATG------------AAGAA---GAA----------------------------ACGAAGGCGCA.......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....CGATGTGGATG------------AAGAA---GAA----------------------------ACGA..............................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ATATTGAATAGCGCAAAA---G......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........GTGGATG------------AAGAA---GAA----------------------------ACGAAGGC..........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................TTCCG-----TC-----------------GAACTTTT-GGTTGTATG......................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................A-TTTCCG-----TC-----------------GAACTTTT-GGT............................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................GAA---GAA----------------------------ACGAAGGCGCAGCCCAAGGAT.............................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GAAGGCGCAGCCCAAGGATTC...........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................CTTTTAATTGTAAATC-----------CTTTGTTCCT................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GATGTGGATG------------AAGAA---GAA----------------------------..................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................TTTT-------A-TTTCCG-----TC-----------------GAACTTTT-G..............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................CCCAAGGATTCCAAAGCTGG..................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................TTCCAAAGCTGGGTAAGAC...........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AAGGATTCCAAAGCTGGG.................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GGATG------------AAGAA---GAA----------------------------ACGAAGGCGC........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................AAGAA---GAA----------------------------ACGAAGGCGCAT......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TCATATTGAATAGCGCAAAA---GACATAC................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CTTTGTTCCTTAATAAATATTA--TTG...............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CCAAAGCTGGGTAAGACGG-AACC....................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TT-------A-TTTCCG-----TC-----------------GAACTTTT-GGT............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TTCCAAAGCTGGGTAAGACGG-........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AAA---GACATACATTAACTTTAGCTTTTA...............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................ATTCCAAAGCTGGGTAAGACG..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GATGTGGATG------------AAGAA---GAA----------------------------AC................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TTTT-GGTTGTATGTT--TTTCA.............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...GACGATGTGGATG------------AAGAA---GAA----------------------------A.................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GATGTGGATG------------AAGAA---GAA----------------------------A.................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................ATATTGAATAGCGCAAAA---TT.....................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................AGGCGCAGCCCAAGGATT............................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GAAGACGATGTGGATG------------AAGAA---GAA----------------------------CCGAAGACGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCAGT------------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATAATTTCTTTT-------A-TTTCCG-----TC-----------------GAACTTTT-GGTTGTATGTT--TTTCATACA-----CTA----A-------------ACCATATTGAATAGCACAAAA---GACACACATTAACTCTAGCTATTAATTGTAAATC-----------CTTTGTTCCTTAATAAATATTA--TTGTAT-----AATT--ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............GATG------------AAGAA---GAA----------------------------CCGAAGACGCAGCCC...................................................................................................................................................................................................................................................................................................................................................2712.00201100000000000000
..................................................................................................................................................................................................................................................................................................................................AGCACAAAA---GACACACATTAACTCTAGCT...................................................................2912.00202000000000000000
..............................................................................................................................................................................................................................................................................................................................................GACACACATTAACTCTAGCT...................................................................2012.00202000000000000000
...............G------------AAGAA---GAA----------------------------CCGAAGACGCAGCCCAAG................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
....................................................................................................................................................................................................................TT-------A-TTTCCG-----TC-----------------GAACTTTT-GG.............................................................................................................................................................2111.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................AAAA---GACACACATTAACTCTAGCT...................................................................2411.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................A---GACACACATTAACTCTAGCT...................................................................2111.00101000000000000000
........TGTGGATG------------AAGAA---GAA----------------------------CCGAAGACGCAG......................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
............GATG------------AAGAA---GAA----------------------------CCGAAGACGCAGCC....................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................TTAACTCTAGCTATTAATTGTAAATC-----------CT........................................2811.00100010000000000000
...............................................................................................CTGGGTAAGACGG-AACCGCT.................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.............................................................................................................................................................................................................................A-TTTCCG-----TC-----------------GAACTTTT-GG.............................................................................................................................................................1911.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................TTAACTCTAGCTATTAATTGTAAA.......................................................2411.00100000001000000000
...............G------------AAGAA---GAA----------------------------CCGAAGACGC........................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.................................................................................................................................................................................................................................TCCG-----TC-----------------GAACTTTT-GGTTGTA........................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................A-TTTCCG-----TC-----------------GAACTTTT-GGTT...........................................................................................................................................................2111.00100100000000000000
GAAGACGATGTGGATG------------AAGA.....................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...GACGATGTGGATG------------AAGAA---GAA----------------------------CCGAA.............................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................A---GACACACATTAACTCTAGCG...................................................................2111.00101000000000000000
droSec2
GAAGACGATGTGGATG------------AAGAA---GAA----------------------------CCGAAGACGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCAGT------------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATAATTTCTTTA-------A-TTTCCG-----TC-----------------GAACTTTT-GGTTGTATGTT--TTTCATACA-----CTA----A-------------ACCATATTGAATAGCACAAAA---GACATACATTAACTCTAGCTATTAATTGTAAATC-----------CTTTGTTCCTTAATAAATATTA--TTGTAT-----AATT--ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................GCCCAAGGATTCCAAAGCTGG..................................................................................................................................................................................................................................................................................................................................2130.3310100
......................................A----------------------------CCGAAGACGCAGCCCAAG................................................................................................................................................................................................................................................................................................................................................1930.3310010
.......................................................................AGACGCAGCCCAAGGATTCCAAAGCT....................................................................................................................................................................................................................................................................................................................................2630.3310100
.AAGACGATGTGGATG------------AAGA.....................................................................................................................................................................................................................................................................................................................................................................................................1940.2510010
droYak3
GAAGACGATGTGGATG------------ATGAA---GAA----------------------------CCGAAGACGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-AACCGCTCAGT------------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT---------------GTATTTATAATTTCTTAT-------A-TTTCCG-----TC-----------------GAACCTTT-GGTTGTATGTT--TTTCATACA-----GTA----A-------------ACCATATTGAATAGCGCAAAA---GACATACATTAACTTTAGCTTTTAATTGTAAAAC-----------TTTTGTTCCTTAATAAATAATA--TTGTAT-----AATT--ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................AA---GAA----------------------------CCGAAGACGCAGCCC...................................................................................................................................................................................................................................................................................................................................................2012.00201100000000
...............................................................................................................................................................................................................TTCTTAT-------A-TTTCCG-----TC-----------------GAACCT..................................................................................................................................................................2211.00110000000000
..................................................................................................................................................................................................................................................................................................TA----A-------------ACCATATTGAATAGCGCAAA...........................................................................................2311.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................TTTAATTGTAAAAC-----------TTTTGTTCCG................................2411.00110000000000
.........GTGGATG------------ATGAA---GAA----------------------------CCGAAGACG.........................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..AGACGATGTGGATG------------ATGA.....................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000
........TGTGGATG------------ATGAA---GAA----------------------------CCGAAGACGC........................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
....................................................................CGAAGACGCAGCCCAAGGA..............................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............................GAA---GAA----------------------------CCGAAGACGCAGCCCAAGG...............................................................................................................................................................................................................................................................................................................................................2511.00101000000000
GAAGACGATGTGGATG------------ATGAA---GAA----------------------------CC................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.AAGACGATGTGGATG------------ATGAA---G................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................................................................................................................................................................................................................................................ATGTT--TTTCATACA-----GTA----A-------------ACC............................................................................................................2111.00101000000000
droEre2
GAAGACGATGTGGATG------------AAGAA---GAA----------------------------CCGAAGACGCAGCCTAAGGATTCCAAAGCTGGGTAAGAAGG-AACCGCTTAGT------------------AATGAC-CAGGATTCCTGCTAT-------A-TTGCTCGAATTT---------------GTATTTATAATTTCTTAT-------A-TTTCCG-----TC-----------------GAAGTTTT-GGTTGTATGTT--TTTCATACAGTAACCTA----A-------------ACCATATTGAATAACGCAAAA---GACATACATTAACTCTAGCTTTTAATTGTAAAAC-----------TTTTGTTCCTTAATAAATAATA--TTGTAT-----AATT--ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................TAAGGATTCCAAAGCTGG..................................................................................................................................................................................................................................................................................................................................1811.0011000000
...GACGATGTGGATG------------AAGAA---G................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
....................................GAA----------------------------CCGAAGACGCAGCCTAAGG...............................................................................................................................................................................................................................................................................................................................................2211.0010000100
dp5
GACGACGA------------------------G---GAG----------------------------CCGCAGGCTCAGCCCGAGGAGTCCAAAGCTGGGTAAGCTGGGGTCCGCTTTTT------------------ATTGAC-AAGGAATC--GATGT-------G-TTGCTCGAATTT-------------A-TTATTTATGATTGTGATG-------A-CGT-TT-----TC-----------------GGGTTTTT-TTTTGTGTTTG--TTTCCTTCATAAA-AAA---AA-------------AC------AAATTGCGCAAAC---TACATGCATTAAAGTTAGCTCATAACTGTATA-C-----------TTTTGTTCCTTAATAAATATTA--CTGTAT-----AATT--TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................CCTTAATAAATATTA--CTGTAT-----AATT--.2512.0020000000200
...............................................................................................................................................................................................................................................................................................................................................................GCTCATAACTGTATA-C-----------TTTTGTTCCTTA..............................2811.0010010000000
......................................................................................................................................................................................................ATTTATGATTGTGATG-------A-CGT-T.................................................................................................................................................................................................2111.0010000001000
....................................................................CGCAGGCTCAGCCCGAGGA..............................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................................................................CAGGCTCAGCCCGAGGAGTCCAAA.......................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................................................................................................TTATGATTGTGATG-------A-CGT-TT-----T..........................................................................................................................................................................................2111.0010100000000
droPer2
GACGACGA------------------------G---GAG----------------------------CCGCAGGCTCAGCCCGAGGAGTCCAAAGCTGGGTAAGCTGGGGTCCGCTTTTT------------------ATTGAC-AAGGAATCTTGATGT-------G-TTGCTCGAATTT-------------A-TTATTTATGATTGTGATG-------A-CGT-TT-----TC-----------------GGGTTTTT--TTTGTGTTTG--TTTCCTTCATAAA-A-A----A-------------ACA------AATTGCGCAAAC---TACATGCATTAAAGTTAGCTCATAACTGTATA-C-----------TTTTGTTCCTTAATAAATATTA--CTGTAT-----AATT--TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................CTGTATA-C-----------TTTTGTTCCT................................1813.003300000
...................................................................................................................................................................................................................................................................................................................................................................ATAACTGTATA-C-----------TTTTGTTCCT................................2211.001100000
..............................................................................................................................................................................................................................................................................................................................................................AGCTCATAACTGTATA-C-----------TTTTGTTCCT................................2711.001010000
droWil2
GATGAGGATGTAGATGTGTCCGAGCAAGATCAG---GAA-------CCAGAGCAGGAGCAGAGTGAACAGCAGACGAATTCCAAGGACTCTAAAGCTGGGTAAGCTGGCCGTCGCTTTCT------------------ATTGACGAACGAATCTCG-----------A-TTGCTCGAATTTTGTTTTATTTTTTA-TCACTTTTGATTTTTATT-------T-CCT-TTTTTTTT---GTTTTCTCACATTTTGG-TTTTT-TTTTGCGTTTGCCTCTCATAAA-----ATT----AAACAGCAAAAAAAGAGAAGAAGAAAAGTGCAAG-------ATAAATTAACTTTAGTATATAATTGTATAAA---------A-TTATGTTCCTTAATAAATAATA--TTATATCGATTGATC--GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................GCAAGATCAG---GAA-------CCAGAGCAGGAGC..........................................................................................................................................................................................................................................................................................................................................................................2614.00430100
........................CAAGATCAG---GAA-------CCAGAGC................................................................................................................................................................................................................................................................................................................................................................................1912.00220000
............................ATCAG---GAA-------CCAGAGCAGGAGCAGA.......................................................................................................................................................................................................................................................................................................................................................................2411.00100010
................................................................................................................................................GAACGAATCTCG-----------A-TTGCTCGAAT..................................................................................................................................................................................................................................................2311.00110000
................................................................GAACAGCAGACGAATTCCA..................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................................................GAACAGCAGACGAATTCC...................................................................................................................................................................................................................................................................................................................................................1811.00100010
.................GTCCGAGCAAGATCAG---GA...............................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
............................................................................AATTCCAAGGACTCTAAAGCTGGC.................................................................................................................................................................................................................................................................................................................................2411.00110000
............................................................................................................................................................................................................................................................................................................AGCAAAAAAAGAGAAGAAGAAAA..................................................................................................2311.00100010
.......................GCAAGATCAG---GAA-------CCAGA..................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
....AGGATGTAGATGTGTCCGAGC............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
....................................................CAGGAGCAGAGTGAACAGCAGAC..........................................................................................................................................................................................................................................................................................................................................................2311.00100100
...................................................................................................................TTTCT------------------ATTGACGAACGAATCTCG-----------A-TTG.........................................................................................................................................................................................................................................................2711.00100100
...........................................................AGAGTGAACAGCAGACGAA.......................................................................................................................................................................................................................................................................................................................................................1911.00100001
..................................................................ACAGCAGACGAATTCCAAGGACTCTAA........................................................................................................................................................................................................................................................................................................................................2711.00110000
.....................................AA-------CCAGAGCAGGAGCAGAGTGAAC.................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.........GTAGATGTGTCCGAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..........................................................CAGAGTGAACAGCAGACG.........................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
GACGAAGATGTGGAAG------------GATCG---GAG------ACTTTACCGCCACTAAGGGAT-GCAGCGGCGCAAGCCAAGGATACCAAAGCTGGGTAAGCTGG---CCGCTTGTT------------------TTTACCGAACGAACCTCGTTTC-TAAGGCATTTGCTCGAATTT---------------TAACCTATGATCTATTG---GCCTTGA--------TTTT---GTTTATTCGCAATT--------------------------------------------------------------------------CAAGT-------CAAAATAACGTTAGCTGTTAATTGTGTAAA---------T-TTCTGTTCCTTAATAAATTATAAACTGTAC-----GATTTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................CTGGGTAAGCTGG---CCGCTT................................................................................................................................................................................................................................................................................................................1912.002000002000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TAACCTATGATCTATTG---GCCTTGA--------TTT...........................................................................................................................................................................................2712.002000000000000000000000000010000000000001000000000000000000000000
..........................................................TAAGGGAT-GCAGCGGCGCAAGCC...................................................................................................................................................................................................................................................................................................................................................2311.001000000010000000000000000000000000000000000000000000000000000000
.................................................TACCGCCACTAAGGGAT-GCAGCGGCG.........................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................TGTT------------------TTTACCGAACGAACCTCGT........................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................CGCCACTAAGGGAT-GCAGC.............................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................CCGCTTGTT------------------TTTACCGAACG................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000001000000000000000000000000000000
......................................G------ACTTTACCGCCACTAAGGGAT-GC................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............AG------------GATCG---GAG------ACTTTACCGCCACT..........................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AACGTTAGCTGTTAATTGT..........................................................1911.001000001000000000000000000000000000000000000000000000000000000000
.............AAG------------GATCG---GAG------ACTTTACCGCCA............................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
...........................................................AAGGGAT-GCAGCGGCGCAAGC....................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
.........GTGGAAG------------GATCG---GAG------ACTTTACCGC..............................................................................................................................................................................................................................................................................................................................................................................2511.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGATCTATTG---GCCTTGA--------TTTT---GTTTAT.................................................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
GACGAAGATGTGGAAG------------GATCG---.................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TTCGCAATT--------------------------------------------------------------------------CAAGT-------CAAAATAACGTTAGC....................................................................2911.001000000000000000000000000001000000000000000000000000000000000000
..........................................................TAAGGGAT-GCAGCGGCGCAAGCCAAGG...............................................................................................................................................................................................................................................................................................................................................2711.001000000010000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TAGCTGTTAATTGTGTAAA---------T-TTCTG.....................................2511.001000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TTT---GTTTATTCGCAATT--------------------------------------------------------------------------CAAGT-------...................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
......GATGTGGAAG------------GATCG---GAG------........................................................................................................................................................................................................................................................................................................................................................................................1811.001000001000000000000000000000000000000000000000000000000000000000
...............................................................................................CTGGGTAAGCTGG---CCGCT.................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
...........GGAAG------------GATCG---GAG------ACTTTACCGC..............................................................................................................................................................................................................................................................................................................................................................................2311.001000000000100000000000000000000000000000000000000000000000000000
........................................................................................................CTGG---CCGCTTGTT------------------TTTACCGAA..................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
GACGACGACGAAGATATAGCTGAGGGCGTTGATAAGGAA----------------------------CCAAAGGCGCAAGCCAAGGATACCAAAGTTGGGTAAGCAGG---CCGCTTATT-T-----TGA-TCTA---TTTAACGAACGAATCTCGTTTGCTATGGCATTTGCTCGAATTT---------------TAACATATAATTTATTG---GGCTTGA--------TTTT---GTTAACTCGCAATT--------------------------------------------------------------------------CAAGTAACTTCTTATAATAACTCTAGCTGTTAATTGTGTGAA---------T-TTATGTTCCTTAATAAATTATAAACTTTTT-----GAATTCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............TATAGCTGAGGGCGTTGATAAGGAA----------------------------CC................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.........................................................................................................................................................................................................................................................................................................................................GTAACTTCTTATAATAACTCTAGCTGC.................................................................2711.001000010
.................AGCTGAGGGCGTTGATAAGGAA----------------------------CCAA..............................................................................................................................................................................................................................................................................................................................................................2611.001000001
...........................................................................GCAAGCCAAGGATACCAAAGTTG...................................................................................................................................................................................................................................................................................................................................2311.001100000
.........GAAGATATAGCTGAGGGCGT........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
............GATATAGCTGAGGGCGTTGATAAG.................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droGri2
GAGGATGATGATGAGGCGGC---AGATGGTGAG---GGAGCGGAGACCTCACCGCCGCAAGCGGAT-ACAATGGCGCAAGCCAAGGATACCAAAGCTGGGTAAGCAGG-A--CGCTTATT-------TGA-TTTTT--GAAGCG-AACGAATCTCGTTTTTCAAAGCA-TTGCTCGAATTT---------------GAACGTATAATATATTATTGGCCTTGA--------GTTTGTTGTTAACACGCAATT--------------------------------------------------------------------------CAAGT-------CAGCTTAACTTTAGATGTTACCTGTGTACA---------T-TTCTGTTCCTTAATAAATTATATATTGTAT-----GATTTCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................GATGGTGAG---GGAGCGGAGACCT....................................................................................................................................................................................................................................................................................................................................................................................2213.00303
.........................ATGGTGAG---GGAGCGGAGACCT....................................................................................................................................................................................................................................................................................................................................................................................2112.00211
............................................................................................................................................................................................................................TGA--------GTTTGTTGTTAACACGCA............................................................................................................................................................................2111.00110
....................................................................................................................................................................................................................ATTGGCCTTGA--------GTTTGTTGTTA...................................................................................................................................................................................2211.00101
.......ATGATGAGGCGGC---AGATGG........................................................................................................................................................................................................................................................................................................................................................................................................1911.00101
....................................GGAGCGGAGACCTCACCGCC.............................................................................................................................................................................................................................................................................................................................................................................2011.00110
GAGGATGATGATGAGGCGGC---A.............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
........TGATGAGGCGGC---AGATGGTGA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
....................................................................................................................................TTTT--GAAGCG-AACGAATCTCG.........................................................................................................................................................................................................................................................................2111.00101
.....................................................................AATGGCGCAAGCCAAGGATACC..........................................................................................................................................................................................................................................................................................................................................2211.00110
....................................................................................................................................................................................................................ATTGGCCTTGA--------GTTTGTTGTT....................................................................................................................................................................................2111.00101
...GATGATGATGAGGCGGC---A.............................................................................................................................................................................................................................................................................................................................................................................................................1820.50101

Generated: 05/17/2015 at 10:57 PM