ID:

dan_672

 Coordinate:

scaffold_12916:11993662-11993812 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.9 -10.4 -10.1 -10.0

Flybase annnotation

CDS [Dana\GF14254-cds]; exon [dana_GLEANR_15015:10]; intron [Dana\GF14254-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_354:114-139 -
  2. scaffold_10733:1160-1185 -
  3. scaffold_12586:108255-108280 -
  4. scaffold_12911:710549-710574 -
  5. dan_672  scaffold_12916:11993697-11993722 -
  6. scaffold_12984:477390-477415 -
  7. scaffold_13043:216632-216657 -
  8. scaffold_13082:2619820-2619845 -
  9. scaffold_13230:1516738-1516763 -
  10. scaffold_13248:279960-279985 -
  11. scaffold_13250:1033545-1033570 -
  12. scaffold_13266:17958504-17958529 -
  13. scaffold_13272:44008-44033 -
  14. scaffold_13339:247120-247145 -
  15. scaffold_13340:10499655-10499680 -
  16. scaffold_13417:4945656-4945681 -
  17. scaffold_13417:5011545-5011570 -
  18. scaffold_13467:82273-82298 -
  19. scaffold_13767:1675667-1675692 -
  20. scaffold_13767:1678457-1678482 -
  21. scaffold_12586:631084-631109 -
  22. scaffold_13082:1677611-1677636 -
  23. scaffold_13269:15504-15529 -
  24. scaffold_13272:43284-43309 -
  25. scaffold_13417:3403600-3403625 -
  26. scaffold_13417:5005474-5005499 -
  27. scaffold_9280:9726-9751 +
  28. scaffold_12948:364018-364043 +
  29. scaffold_12950:20800-20825 +
  30. scaffold_13045:1113874-1113899 +
  31. scaffold_13082:981945-981970 +
  32. scaffold_13082:985866-985891 +
  33. scaffold_13082:1063809-1063834 +
  34. scaffold_13082:3641242-3641267 +
  35. scaffold_13165:228704-228729 +
  36. scaffold_13230:169537-169562 +
  37. scaffold_13230:2366243-2366268 +
  38. scaffold_13239:121725-121750 +
  39. scaffold_13261:174901-174926 +
  40. scaffold_13266:10112705-10112730 +
  41. scaffold_13333:11708-11733 +
  42. scaffold_13334:839899-839924 +
  43. scaffold_13340:17554549-17554574 +
  44. scaffold_13417:3073602-3073627 +
  45. scaffold_13417:4122972-4122997 +
  46. scaffold_13767:1680419-1680444 +
star
  1. scaffold_12665:3374-3397 -
  2. scaffold_12916:5334275-5334298 -
  3. dan_672  scaffold_12916:11993759-11993782 -
  4. scaffold_13034:1248187-1248210 -
  5. scaffold_13082:2619882-2619905 -
  6. scaffold_13089:384084-384107 -
  7. scaffold_13099:2260885-2260908 -
  8. scaffold_13137:643877-643900 -
  9. scaffold_13250:1033607-1033630 -
  10. scaffold_13266:19014582-19014605 -
  11. scaffold_13266:19401585-19401608 -
  12. scaffold_13266:19405274-19405297 -
  13. scaffold_13272:44070-44093 -
  14. scaffold_13333:537313-537336 -
  15. scaffold_13340:10499717-10499740 -
  16. scaffold_13340:11355528-11355551 -
  17. scaffold_13340:11691545-11691568 -
  18. scaffold_13340:12349287-12349310 -
  19. scaffold_13417:2507219-2507242 -
  20. scaffold_13767:1678519-1678542 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGCAATGGAAAGTATATGGAGAGAAAAAAACTAGAAAATCGGTATCTCAGCAAGTTTTAGTCCGATCGACATGAAACTTTCACAGGATATTCCTAAGATAATGTTCTATTATATAAAAAATTTCTGAAAAAAAAATTTTTTTGAAGTCTCAAACCATCCTGCCCCCTTAATAATGAAACATTTACATCCATTTGCTATAGAATGTGGTGAAGCCAACTGTGTATGTATGTTTGCCGTATGCCTATAAGAG
********************************************************************************.((..((((.......((((......................(((.((((((....)))))).)))))))......))))))....************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body		 V055
head
 V106
head
............................................................................................................................................TTTGAAGTCTCAAACCATCCTGCCCC..................................................................................... 26 0 20 4.30 86 81 5 0 0 0 0
.............................................................................................................................................TTGAAGTCTCAAACCATCCTGCCCC..................................................................................... 25 0 20 3.40 68 68 0 0 0 0 0
.........................................................................................................................................TTTTTTGAAGTCTCAAACCATCCTGC........................................................................................ 26 0 20 1.65 33 33 0 0 0 0 0
.................................................................................................................................................................................................................GAAGCCAACTGTGTATGTATGTTTGCC............... 27 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................GTATGTATGTTTGCCGTATGC......... 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................TTTGAAGTCTCAAACCATCCTGCCCCC.................................................................................... 27 0 20 0.60 12 12 0 0 0 0 0
...............................................................................................................................................................................................TTTTCTATAGAATGTGGAGA........................................ 20 2 3 0.33 1 0 0 1 0 0 0
...............................................TCAGCAAGTTTTAGTCCGATCGACATGA................................................................................................................................................................................ 28 0 20 0.25 5 2 0 3 0 0 0
................................................................................TCACAGGATATTCCTAAGATAATG................................................................................................................................................... 24 0 20 0.25 5 5 0 0 0 0 0
.....................................................................................................................................AAATTTTTTTGAAGTCTCAAACCATCC........................................................................................... 27 0 20 0.25 5 5 0 0 0 0 0
............................................................GTCCGATCGACATGAAACTTTCACAGGA................................................................................................................................................................... 28 0 20 0.20 4 0 4 0 0 0 0
....................................................................................................................................................CTCAAACCATCCTGCCCCCTT.................................................................................. 21 0 20 0.15 3 0 3 0 0 0 0
..............................................................................TTTCACAGGATATTCCTAAGATAATGTTC................................................................................................................................................ 29 0 20 0.15 3 3 0 0 0 0 0
.........................................................................................................................................TTCTTTGAAGTCTCAAACCATCCTGC........................................................................................ 26 1 20 0.15 3 3 0 0 0 0 0
...............................................................................................................................................GAAGTCTCAAACCATCCTGCCCCCT................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................................TTGAAGTCTCAAACCATCCTGCCAC..................................................................................... 25 1 20 0.10 2 2 0 0 0 0 0
............................................................................................................................................TTCGAAGTCTCAAACCATCCTGCCCC..................................................................................... 26 1 20 0.10 2 2 0 0 0 0 0
..............................................................................................................................................TGAAGTCTCAAACCATCCTGCCCC..................................................................................... 24 0 20 0.10 2 0 0 2 0 0 0
..........................................................TGGTCCGATCGACATGAAACTTTCACAG..................................................................................................................................................................... 28 1 20 0.10 2 2 0 0 0 0 0
...........................................................AGTCCGATCGACATGAAACTTTCACA...................................................................................................................................................................... 26 0 20 0.10 2 0 2 0 0 0 0
..........................................................................................................................................................................................................ATGGGGGGAAGCCGACTGT.............................. 19 3 14 0.07 1 0 0 0 0 1 0
.............................................................................................................................................CTGAAGTCTCAAACCATCCTGCCCCCT................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
................................................................................TCACAGGATAGTCCTAAGATAATGT.................................................................................................................................................. 25 1 20 0.05 1 0 0 1 0 0 0
.................TGGAGAGAAAAAAATTAAAAAA.................................................................................................................................................................................................................... 22 2 20 0.05 1 0 0 0 1 0 0
........................................................................................................................................TTCTTTTGAAGTCTCAAACCATCCTGCC....................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
.........................................................................................ATTCCTAAGATAATGTTCT............................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 1 0
.................................................................ATCGACATGAAACTTTCACAGGATATTC.............................................................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................TTTTGAAGGCTCAAACCATCCTGCCCCC.................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................TTTCTTGAAGTCTCAAACCATCCTG......................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
.......GGAAAGTATATGGAGAGAAAAA.............................................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 1 0 0
......................................................................................................................................AATTTTTTTGAAGTCTCAAACCATCC........................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
...........................................................................AACTTTCACAGGATATTCCTAAGAT....................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................ATGAAGTCTCAAACCATCCTGCCCC..................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
................................................CAGCAAGTTTTAGTCCGATCGACATT................................................................................................................................................................................. 26 1 20 0.05 1 0 0 1 0 0 0
.................................................................................................................................AAAAAAATTTTTTTGAAGTCTCAAAC................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
.......................GAAAAAAACTAGAAAATCGGTATCTCAGC....................................................................................................................................................................................................... 29 0 20 0.05 1 0 0 0 1 0 0
............................................................................................................................................TTTGAAGTGTCAAACCATCCTGCCCC..................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................TTTCTTGAAGTCTCAAACCATCCTGCCCC..................................................................................... 29 1 20 0.05 1 1 0 0 0 0 0
....................................AAATCGGTATCTCAGCAAGT................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................................TTTTTGAAGTCTCAAACCATCC........................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
.............................................................ACCGATCGACATGAAACTTTCACAGGA................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
..................................................GCAAGTTTTAGTCCGATCGACA................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1
.....................................................................................................................................AAATTTTTTTGAAGTCTCAAACC............................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
................................................................GATCGACATGAAACTTTCACAGGATAC................................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0
..........AAGTATATGGAGAGAAAAA.............................................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 1
...CAATGGAAAGTATATGGAGAC................................................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 1 0 0
...................................................................................................................................AAAAATTTTTTTGAAGTCTCAAACCATCC........................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0
..................................................................CCGACATGAAACTTTCACAGGATATTCC............................................................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0 0
................................................................................TCACAGGATATTCCTAAGATAAT.................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
...................................................................................CACGATATTCCTAAGATAATGTTC................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................TGAAGTCTCAAACCATCCTTCCCC..................................................................................... 24 1 20 0.05 1 0 0 1 0 0 0
....AATGGAAAGTATATGGAGAGAA................................................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
..........................................................TAGTCCGATCGACATGAAACT............................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0
................................................................................TCACAGTATATTCCTAAGATAATGTT................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................TTTAGAAGTCTCAAACCATCCTGCCCC..................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................AAATTTTTTTGAAGTCTCAAACCATC............................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
..........AAGTATATGGAGAGAAAAAAACT.......................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0
............................................................................................................................................TTTGAAGTCTCAAACCATCCTGAC....................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
..................................................................TCGACATGAAACTTTCACAGG.................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
..................................................GCAAGTTTGAGTCCGATCGACATGAAACT............................................................................................................................................................................ 29 1 20 0.05 1 0 1 0 0 0 0
............GTATATGGAGAGAAAAAAAC........................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

TTCGTTACCTTTCATATACCTCTCTTTTTTTGATCTTTTAGCCATAGAGTCGTTCAAAATCAGGCTAGCTGTACTTTGAAAGTGTCCTATAAGGATTCTATTACAAGATAATATATTTTTTAAAGACTTTTTTTTTAAAAAAACTTCAGAGTTTGGTAGGACGGGGGAATTATTACTTTGTAAATGTAGGTAAACGATATCTTACACCACTTCGGTTGACACATACATACAAACGGCATACGGATATTCTC
*************************************************************************************.((..((((.......((((......................(((.((((((....)))))).)))))))......))))))....******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
 V105
male body		 V055
head
................................................................CTAGCTGTACTTTGAAAGTGTCCTAT................................................................................................................................................................. 26 0 20 0.50 10 7 1 2 0 0 0
.................................................................TAGCTGTACTTTGAAAGTGTCCTAT................................................................................................................................................................. 25 0 20 0.35 7 3 4 0 0 0 0
................................................GTCGTTCAAAATCAGGCTAGC...................................................................................................................................................................................... 21 0 20 0.25 5 0 5 0 0 0 0
................................................................................AGTGTCCTATAAGGATTCTAT...................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0
.................................TCTTTTAGCCATAGAGTCGTTCAAAAT............................................................................................................................................................................................... 27 0 20 0.10 2 0 2 0 0 0 0
.......................................AGCCATAGAGTCGTTCAAAAT............................................................................................................................................................................................... 21 0 20 0.10 2 0 2 0 0 0 0
..............TATCCCTCTCTTTTTCTGA.......................................................................................................................................................................................................................... 19 2 20 0.05 1 0 1 0 0 0 0
..........................................CATAGAGTCGTTCAAAATCAGGCGA........................................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................TTTTTTTAAAAAAACTTCAGAGTTTG................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
.............................................................................GAAAGTGTCCTATAAGGATTCTATTAC................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
.................................CCTTTTAGCCATGGAGTCGTTCAAAA................................................................................................................................................................................................ 26 2 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................TTTTTTTTTAAAAAAACTTCAGAGCTT................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0
.............................................................AGGCTAGCTGTACTTTGAAAG......................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0
..................................CTTTTAGCCATAGAGTCGTT..................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
......................................................................GTACTTTGAAAGTGTCCTATAAGGATTC......................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0
.......................................AGCCATAGAGTCGTTCAAAATCAGGC.......................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
...............................................AGTCGTTCAAAATCAGGCTACCT..................................................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0
....................TCTCTTTTTTTGTTCATTTCGCCA............................................................................................................................................................................................................... 24 3 20 0.05 1 0 0 0 0 0 1
....................TCTCTTTTTTTGATCTTTTAGCCAT.............................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
............................................................CAGGCTAGCTGTACTTTGAAAGTGT...................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0
.................................................................................GTGTCCTATAAGGATTCTAT...................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
..CGTTACCTTTCATATACCTC..................................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................AAGGATTCTATTACAAGATAATATA........................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
...............................GATCTTTTAGCCATAGAGTCGTTCAA.................................................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................AGAGTTTGGTAGGACGGGGGAAT................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................TTTTTTAAAAAAACTTCAGAGTTTGG............................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
..............................................................GGCTAGCTGTACTTTGAAAGTGTCCCAT................................................................................................................................................................. 28 1 20 0.05 1 0 1 0 0 0 0
....................CCTCTTTTTTTGATCTTTTAGCCAT.............................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0 0
.......................................................................TACTTTGAAAGTGTCCTATAAGGATTC......................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
............................TTTGATCTTTTAGCCATAGAGTCGTTC.................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
...........................................................TCAGGCTAGCTGTACTTTGAAAGT........................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0
..................................CTTTTAGCCATATAGTCGTTCAAAAT............................................................................................................................................................................................... 26 1 20 0.05 1 0 0 1 0 0 0
................................................................CTAGCTGTACTTTGAAAGTGTCCTAGA................................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................AGACTTTTTTTTTAAAAAAACTTC........................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
...................CTCTCTTTTTTTGATCTTTTAGCTAT.............................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
.........................................CCATAGAGTCGTTCAAAATCAGGC.......................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
..................................................CGTTCAAAATCAGGCTAGCTGTACTT............................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0
.......................................................AAAATCAGGCTAGCTGTACTTTGAAA.......................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
..CGTTACCTTTCATATACCTCTCTTTTT.............................................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
.............................TTGATCTTTTAGCCATAGAGTCGTTCAA.................................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
..................................................................AGCTGTACTTTGAAAGTGTCCTA.................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 1 0 0
.TCGTTACCTTTCATATACCTCTCTTT................................................................................................................................................................................................................................ 26 0 20 0.05 1 0 0 0 1 0 0
........................................................AAATCAGGCTAGCTGTACTT............................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0
................................................................................................................................TTTTTTTTAAAAAAACTTCAGAGTT.................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
.............................................................AGGCTAGCTGTACTTTGAAAGTGTCCTA.................................................................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0 0
..............................................................................AAAGTGTCCTATAAGGATGC......................................................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0
.....................................TTAGCCATAGAGTCGTTCAAAAT............................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
..................................................................AGCTGTACTTTGAAAGTGTCCT................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
..............................................................GGCTAGCTGTACTTTGAAAGTGT...................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 1 0
...........................................................................................................................AGACTTTTTTTTTAAAAAAACTTCAGA..................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
..................................................................................TGTCCTATAAGGATTCTATTA.................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0
................................................................CTAGCTGTACTTTGAAAGTGTCCT................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:11993612-11993862 - dan_672 AAGCAATGGAAA---------------------------------------------------GTAT--------------ATGG------------------------------------------------AGAGAAAA--AAACTAGAAAATCGGTATCTCAGCAAGTTTTAGTCCGATCGACATGAAACTTTCACAGGATAT----TCCTAAGATAATGTTCTATTATAT----AAAAA---ATTTC--TGAAAAAAA-AATTTTTT-TGAAG-TCTC-AA-ACCATCCTGCC--CCCTTAATA----------A-TGA-------AACATTTA----------------CATCCATTTGCTATAGAATGTGGTGA-AGCCAACTGTGTATGTATGTTTGCCGTA--TGCCTATAA-GAG
droBip1 scf7180000396742:6695-6933 + ACTGGGGTTTAA---------------------------------------------------GT----------------TTTA---AGTATAA--------TTCAGTTTTTAAGTAGTTTTAATTATTTCGACACTTAACCACTTTTGCCGGACTCTA--------------------------------TCTTAGTATGTTAT----TTTTAAGACACTAAAAA-------ATTTT-TTTAGGAA----AAAAAATTTTCG-ATTTTTT-AAAAAT---AAT-ACTCAGATGTCCCCCTTTAAGG--GGTTATAT-ACAGTTGTG-----------------------------------------ATATATGAAAA-AATCGATTAAGTCTTTAAG-----TATA--TTCTATTGG-GAG
droKik1 scf7180000302803:9400-9641 + TTGCCAGTTGT---------------------------------------------------------------GA-CTCATACGACG-------CGCTGGA------CTTTAAATTTC------------------------------------TCCCA-TTCCTACAGTTTTGCTTCGATCGACTTGAAATTTTCGGACAACAT----TCCTGACACTTTGTACTATTATAT----AAAAA---AGTTT--GAAAAAAAT-GCATTTTT-TGAAATT-TCAAA-ACCCGGATAAC--CCCTTAATGCAGATATGAC-ACTGTCATAATTAGATTTT----------TTTTAG------AATC---------TTAAAAG-AGACAACTACAAA-----------TATG--TTT---------T
droFic1 scf7180000453927:653882-654131 + GAGACAATGAAAA---------------------------------------------------T--GGTCTC-AAG------------------C------GTC-----------------------------------C--ACCTTCTCAAGGCTGTATCTCCGAGACTATTACTCGGATCAACTTGAAAATTTAGGACAATAT----TCTAGAAATGTTATAGAATTTAAT----AAGAC---ACAAT--TTTTTGTGTCG-ATTTTTT-GAAACC-GTGAA-ACCCATGTAAC--CCCTTAAAC----------A-TTCTGTGAAAAATATTTC----------------TTTCTATTTC---------ATAAATAAATGATATTTTTTGTTTATGCCTTTTTCGTGTACGTGTAA----
droEle1 scf7180000490357:2680-2863 - TAGCAATTGAAA---------------------------------------------------GTAT--------------GAAA------------------------------------------------AAGCACGG--TTACGAGTTGACCGGTATCTCAGCTGGTTTTAGTCCGATAAACATGAAATTTTCACATGATATACATACCGGATATGTTGTACTTTTATAT----GAAAA---ATGAT-----TGAAAACT-ATTTTTTTGAAG-TTTC-AA-ACCATCCCGGC--CTCTTAATA----------G-TTC-------ATCA-----------------------------------------------------------------------------------------T
droRho1 scf7180000776208:1014-1278 - GAGCCCGAATTGC---------------------------------------------------C--CGTTGT-GA-CG--TTCGACG-------CGCTGGG------CTCTAAATTTC------------------------------------TCCCA-TTCCTACAGTTTTGCTTCGATCGACTTGAAATTTTCAAACAACAT----TCCTGAAACTTTGTACTATTATAT----AAAAA---AGTTT--GAAAAAAAT-GAATTTTT-TGAAGTG-TCAAG-ACCCGGATAAC--CCCTTAATA----------AGCTGCCTTGA-TGTTTCTGTATTAATATTGTTGAG----------------AATACCAAAA-GTCACA-CTTGTACGCATACACATTGTG--TGTTTATGG-GA-
droBia1 scf7180000299409:38375-38568 + ACGATAGAAGAC-CGTCCTGGTCCTTGTTCAAATGTTAATATCTTATTTATTTTTTGTCCTATGGGC--------------ATGA---AGGGAAA--------AATAACGTTCAATTGG------------------------------------TCATATCTTTTCCAATTTTCGACCGATAGGTATGAAATTTAAACACAACAT----TCTGGAAACGTTAAACATTAAACAATCCA-AACAATAA--AA--AAA---------------------------------------------------------------AGA-------AAAA-----------------------------------------------------------------------------------------T
droTak1 scf7180000415971:34608-34822 + ATAGGTATAGGG--------------------------------------------------------------GA-CGGCTGGGA------CCG--------CCCCTCGTTCAAATGG------------------------------------TCATATTTTTTGTAATTTTTATCCGATTGACATGAAATTTTAACACAACAT----TTTTAACGTGTTGTACATTAATAA----AAAAA---ATTTT--AAAAAAATC-GAAA------AAAAAA-TTAAATACCATACC-CC--CCCTTAAGA--A-------A-TTC-------G--AATTC----------------GTTCGTTTAC---------AAAAAGGGATGAAAAACTTT-------------------GT---------A
droEug1 scf7180000409452:358876-358929 + ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGTTGTGA-AGCCCACCGTGTATATCTGCCTGCCGTA--TGCTTATAA-GAA
dm3 chr2L:13787296-13787349 + ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGTGA-ATCCTACTGTGTATATCTGCCTGCCGTA--TGCCTATAA-AAA
droSim2 2l:13372755-13372808 + ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGTGA-ATCCTACTGTGTATATCTGCCTGCCGTA--TGCCTATAA-AAA
droSec2 scaffold_0:4017928-4018105 + GTGCAGCTGTAG-CG-----------------------------------------------------------CT-CCGTTG------------C------CTTCTTCCAAGAAATGC--------------TGTACAGT--AACCGAAATAATCTGAAT-------------------TTCGGCATGAAAATTTCAGGGAATAT----TCGGAAGAGTGTATACTATTTGAT----GAAACAAAAA--AAAAAAAAAAAACG-ATTTTTT-GAAAAT-TTCAC-ACTGGAAAGCT--CCCTTAATA--------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr3h_random_002:639088-639265 - GAGGGATTACC--------------------------------------------------------TGAGGTAGT-CG--TTCG------------------------------------------------AGACCCGT--CTATTTCCAAAGCTATATCTTTGTGAGTTTTGCTCCGATTGACTTCCTATTTACATACAACAA----TCTTGAGTTACTATACTTTCATAA----TATAC---AATTT--AAAAAAAAC-ACTTTTTT-TGAACCC-TCAAA-ACCCTACCCCC--CCCTTAA----------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:11678782-11678836 - ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATGGTGA-AGCCCACTGTGTATATTTGCCTACCGTA--TGCCTATAAAAAA
dp5 4_group4:5947607-5947667 - ACTTCCCTTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGTGA-AGCCGACTGTCTACATTTGCCTGCCGTA--TGCGTACAA-GAT
droPer2 scaffold_16:956000-956060 + ACTTCCCTTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGTGA-AGCCGACTGTCTACATTTGCCTGCCGTA--TGCGTACAA-GAT
droWil2 scf2_1100000004961:417426-417605 - ACACCCAAAAATC---------------------------------------------------T--AATATA-AAACG--GTCGG------CCG--------ACCTGCGTTCAACTGC------------------------------------CCATAACTTCACAAGTTTTACTCGGATTGATATAAAATTTTAACACACTAT----TCTTAAGATGTTGTGTATGAAGAA----AAAAT---AT--AT-AAAAAAAAATT-TTTTTTT-TAATGT-TTAAT-ACTATACC--T--CTCTTAAC--------------------------------------------------------------------------------------------------------------------A
droVir3 scaffold_12723:718928-718981 + ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATGTTA-AGCCGACGCTTTATATATGCCTACCATA--TGACTATCG-CCT
droMoj3 scaffold_6500:29241767-29241839 + ATACTCACATGAT---------------------------------------------------T--TA---------------------------------------CTTACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTGTAA-AGCCCACGGTTTATATTCGATTGCCATA--TGATTTTGA-CTT
droGri2 scaffold_15252:4259698-4259747 + ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATTGTAA-AGCCCACGGTCAACATTTGTCTACCGTA--TGACG-----AAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AAGCAATGGAAA---------------------------------------------------GTAT--------------ATGG------------------------------------------------AGAGAAAA--AAACTAGAAAATCGGTATCTCAGCAAGTTTTAGTCCGATCGACATGAAACTTTCACAGGATAT----TCCTAAGATAATGTTCTATTATAT----AAAAA---ATTTC--TGAAAAAAA-AATTTTTT-TGAAG-TCTC-AA-ACCATCCTGCC--CCCTTAATA----------A-TGA-------AACATTTA----------------CATCCATTTGCTATAGAATGTGGTGA-AGCCAACTGTGTATGTATGTTTGCCGTA--TGCCTATAA-GAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................TT-TGAAG-TCTC-AA-ACCATCCTGCC--CC...........................................................................................................................26204.30865810000
..............................................................................................................................................................................................................................................................................T-TGAAG-TCTC-AA-ACCATCCTGCC--CC...........................................................................................................................25203.40680680000
..........................................................................................................................................................................................................................................................................TTTTT-TGAAG-TCTC-AA-ACCATCCTGC................................................................................................................................26201.65330330000
..........................................................................................................................................................................................................................................................................................................................................................................................GA-AGCCAACTGTGTATGTATGTTTGCC..................2711.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................GTATGTATGTTTGCCGTA--TGC..........2111.001010000
.............................................................................................................................................................................................................................................................................TT-TGAAG-TCTC-AA-ACCATCCTGCC--CCC..........................................................................................................................27200.60120120000
..................................................................................................................................................................TCAGCAAGTTTTAGTCCGATCGACATGA..........................................................................................................................................................................................................................................28200.255023000
...................................................................................................................................................................................................TCACAGGATAT----TCCTAAGATAATG.........................................................................................................................................................................................................24200.255050000
.....................................................................................................................................................................................................................................................................A-AATTTTTT-TGAAG-TCTC-AA-ACCATCC...................................................................................................................................27200.255050000
...............................................................................................................................................................................GTCCGATCGACATGAAACTTTCACAGGA.............................................................................................................................................................................................................................28200.204400000
.......................................................................................................................................................................................................................................................................................CTC-AA-ACCATCCTGCC--CCCTT........................................................................................................................21200.153300000
.................................................................................................................................................................................................TTTCACAGGATAT----TCCTAAGATAATGTTC......................................................................................................................................................................................................29200.153030000
.................................................................................................................................................................................................................................................................................GAAG-TCTC-AA-ACCATCCTGCC--CCCT.........................................................................................................................25200.102020000
................................................................................................................................................................................................................................................................................TGAAG-TCTC-AA-ACCATCCTGCC--CC...........................................................................................................................24200.102002000
..............................................................................................................................................................................AGTCCGATCGACATGAAACTTTCACA................................................................................................................................................................................................................................26200.102200000
............................................................................................................................................................................................................AT----TCCTAAGATAATGTTCT.....................................................................................................................................................................................................19200.051000100
....................................................................................................................................................................................ATCGACATGAAACTTTCACAGGATAT----TC....................................................................................................................................................................................................................28200.051100000
.......GGAAA---------------------------------------------------GTAT--------------ATGG------------------------------------------------AGAGAAAA--A........................................................................................................................................................................................................................................................................................22200.051000010
.......................................................................................................................................................................................................................................................................AATTTTTT-TGAAG-TCTC-AA-ACCATCC...................................................................................................................................26200.051010000
..............................................................................................................................................................................................AACTTTCACAGGATAT----TCCTAAGAT.............................................................................................................................................................................................................25200.051010000
...................................................................................................................................................................CAGCAAGTTTTAGTCCGATCGACATT...........................................................................................................................................................................................................................................26200.051001000
.................................................................................................................................................................................................................................................................AAAAA-AATTTTTT-TGAAG-TCTC-AA-AC........................................................................................................................................26200.051010000
........................................................................................................................................GAAAA--AAACTAGAAAATCGGTATCTCAGC.................................................................................................................................................................................................................................................................29200.051000010
.......................................................................................................................................................AAATCGGTATCTCAGCAAGT.............................................................................................................................................................................................................................................................20200.051100000
...........................................................................................................................................................................................................................................................................TTTT-TGAAG-TCTC-AA-ACCATCC...................................................................................................................................22200.051010000
.....................................................................................................................................................................GCAAGTTTTAGTCCGATCGACA.............................................................................................................................................................................................................................................22200.051000001
.....................................................................................................................................................................................................................................................................A-AATTTTTT-TGAAG-TCTC-AA-ACC.......................................................................................................................................23200.051010000
...................................................................................................................................................................................GATCGACATGAAACTTTCACAGGATAC----......................................................................................................................................................................................................................27200.051010000
..........AA---------------------------------------------------GTAT--------------ATGG------------------------------------------------AGAGAAAA--A........................................................................................................................................................................................................................................................................................19200.051000001
...CAATGGAAA---------------------------------------------------GTAT--------------ATGG------------------------------------------------AGAC...............................................................................................................................................................................................................................................................................................21200.051000010
...................................................................................................................................................................................................................................................................AAA-AATTTTTT-TGAAG-TCTC-AA-ACCATCC...................................................................................................................................29200.051010000
...................................................................................................................................................................................................TCACAGGATAT----TCCTAAGATAAT..........................................................................................................................................................................................................23200.051100000
....AATGGAAA---------------------------------------------------GTAT--------------ATGG------------------------------------------------AGAGAA.............................................................................................................................................................................................................................................................................................22200.051010000
.............................................................................................................................................................................TAGTCCGATCGACATGAAACT......................................................................................................................................................................................................................................21200.051010000
.....................................................................................................................................................................................................................................................................A-AATTTTTT-TGAAG-TCTC-AA-ACCATC....................................................................................................................................26200.051010000
..........AA---------------------------------------------------GTAT--------------ATGG------------------------------------------------AGAGAAAA--AAACT....................................................................................................................................................................................................................................................................................23200.051000010
.....................................................................................................................................................................................TCGACATGAAACTTTCACAGG..............................................................................................................................................................................................................................21200.051010000
...............................................................GTAT--------------ATGG------------------------------------------------AGAGAAAA--AAAC.....................................................................................................................................................................................................................................................................................20200.051000010
droBip1
ACTGGGGTTTAA---------------------------------------------------GT----------------TTTA---AGTATAA--------TTCAGTTTTTAAGTAGTTTTAATTATTTCGACACTTAACCACTTTTGCCGGACTCTA--------------------------------TCTTAGTATGTTAT----TTTTAAGACACTAAAAA-------ATTTT-TTTAGGAA----AAAAAATTTTCG-ATTTTTT-AAAAAT---AAT-ACTCAGATGTCCCCCTTTAAGG--GGTTATAT-ACAGTTGTG-----------------------------------------ATATATGAAAA-AATCGATTAAGTCTTTAAG-----TATA--TTCTATTGG-GAGSizeHit CountTotal NormTotal
No Reads
droKik1
TTGCCAGTTGT---------------------------------------------------------------GA-CTCATACGACG-------CGCTGGA------CTTTAAATTTC------------------------------------TCCCA-TTCCTACAGTTTTGCTTCGATCGACTTGAAATTTTCGGACAACAT----TCCTGACACTTTGTACTATTATAT----AAAAA---AGTTT--GAAAAAAAT-GCATTTTT-TGAAATT-TCAAA-ACCCGGATAAC--CCCTTAATGCAGATATGAC-ACTGTCATAATTAGATTTT----------TTTTAG------AATC---------TTAAAAG-AGACAACTACAAA-----------TATG--TTT---------TSizeHit CountTotal NormTotal
No Reads
droFic1
GAGACAATGAAAA---------------------------------------------------T--GGTCTC-AAG------------------C------GTC-----------------------------------C--ACCTTCTCAAGGCTGTATCTCCGAGACTATTACTCGGATCAACTTGAAAATTTAGGACAATAT----TCTAGAAATGTTATAGAATTTAAT----AAGAC---ACAAT--TTTTTGTGTCG-ATTTTTT-GAAACC-GTGAA-ACCCATGTAAC--CCCTTAAAC----------A-TTCTGTGAAAAATATTTC----------------TTTCTATTTC---------ATAAATAAATGATATTTTTTGTTTATGCCTTTTTCGTGTACGTGTAA----SizeHit CountTotal NormTotal
No Reads
droEle1
TAGCAATTGAAA---------------------------------------------------GTAT--------------GAAA------------------------------------------------AAGCACGG--TTACGAGTTGACCGGTATCTCAGCTGGTTTTAGTCCGATAAACATGAAATTTTCACATGATATACATACCGGATATGTTGTACTTTTATAT----GAAAA---ATGAT-----TGAAAACT-ATTTTTTTGAAG-TTTC-AA-ACCATCCCGGC--CTCTTAATA----------G-TTC-------ATCA-----------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
GAGCCCGAATTGC---------------------------------------------------C--CGTTGT-GA-CG--TTCGACG-------CGCTGGG------CTCTAAATTTC------------------------------------TCCCA-TTCCTACAGTTTTGCTTCGATCGACTTGAAATTTTCAAACAACAT----TCCTGAAACTTTGTACTATTATAT----AAAAA---AGTTT--GAAAAAAAT-GAATTTTT-TGAAGTG-TCAAG-ACCCGGATAAC--CCCTTAATA----------AGCTGCCTTGA-TGTTTCTGTATTAATATTGTTGAG----------------AATACCAAAA-GTCACA-CTTGTACGCATACACATTGTG--TGTTTATGG-GA-SizeHit CountTotal NormTotal
No Reads
droBia1
ACGATAGAAGAC-CGTCCTGGTCCTTGTTCAAATGTTAATATCTTATTTATTTTTTGTCCTATGGGC--------------ATGA---AGGGAAA--------AATAACGTTCAATTGG------------------------------------TCATATCTTTTCCAATTTTCGACCGATAGGTATGAAATTTAAACACAACAT----TCTGGAAACGTTAAACATTAAACAATCCA-AACAATAA--AA--AAA---------------------------------------------------------------AGA-------AAAA-----------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
ATAGGTATAGGG--------------------------------------------------------------GA-CGGCTGGGA------CCG--------CCCCTCGTTCAAATGG------------------------------------TCATATTTTTTGTAATTTTTATCCGATTGACATGAAATTTTAACACAACAT----TTTTAACGTGTTGTACATTAATAA----AAAAA---ATTTT--AAAAAAATC-GAAA------AAAAAA-TTAAATACCATACC-CC--CCCTTAAGA--A-------A-TTC-------G--AATTC----------------GTTCGTTTAC---------AAAAAGGGATGAAAAACTTT-------------------GT---------ASizeHit CountTotal NormTotal
No Reads
droEug1
ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGTTGTGA-AGCCCACCGTGTATATCTGCCTGCCGTA--TGCTTATAA-GAASizeHit CountTotal NormTotal
No Reads
dm3
ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGTGA-ATCCTACTGTGTATATCTGCCTGCCGTA--TGCCTATAA-AAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................GA-ATCCTACTGTGTATATCTGCCTGC...................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TACTGTGTATATCTGCCTGCCGTA--TG...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCTGCCGTA--TGCCTATAA-AA.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCGTA--TGCCTATAA-A..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGTGA-ATCCTACTGTGTAT.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TATCTGCCTGCCGTA--TGCCT........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TATATCTGCCTGCCGTA--TGCCT........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCTGCCGTA--TGCCTAT......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTGA-ATCCTACTGT.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GTGGTGA-ATCCTACTGTGTA..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GA-ATCCTACTGTGTATATCTGCCT.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GTGGTGA-ATCCTACTGTGTAT.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTGA-ATCCTACTGTGTAAC............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATCCTACTGTGTATATCTGCCTGCC..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCCTACTGTGTATATCTGCCTGCCGTA--.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGTGA-ATCCTACTGTGTATATCTGCCTGCCGTA--TGCCTATAA-AAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................TATCTGCCTGCCGTA--TGCCTA.......2111.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TCCTACTGTGTATATCTGCCTGCCGTA--.............2711.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATCCTACTGTGTATATCTGCC......................2111.00101000000000000000
droSec2
GTGCAGCTGTAG-CG-----------------------------------------------------------CT-CCGTTG------------C------CTTCTTCCAAGAAATGC--------------TGTACAGT--AACCGAAATAATCTGAAT-------------------TTCGGCATGAAAATTTCAGGGAATAT----TCGGAAGAGTGTATACTATTTGAT----GAAACAAAAA--AAAAAAAAAAAACG-ATTTTTT-GAAAAT-TTCAC-ACTGGAAAGCT--CCCTTAATA--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................AACAAAAA--AAAAAAAAAAAA..................................................................................................................................................................20200.0511000
droYak3
GAGGGATTACC--------------------------------------------------------TGAGGTAGT-CG--TTCG------------------------------------------------AGACCCGT--CTATTTCCAAAGCTATATCTTTGTGAGTTTTGCTCCGATTGACTTCCTATTTACATACAACAA----TCTTGAGTTACTATACTTTCATAA----TATAC---AATTT--AAAAAAAAC-ACTTTTTT-TGAACCC-TCAAA-ACCCTACCCCC--CCCTTAA----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................CTATATCTTTGTGAGTTTTGCTCCGAT..................................................................................................................................................................................................................................................27201.9539032700000000
.....................................................................................................................................................................................................................TGAGTTACTATACTTTCATAA----TATA......................................................................................................................................................................................2530.67202000000000
................................................................................................................................................................TCTTTGTGAGTTTTGCTCCGATTGACT.............................................................................................................................................................................................................................................27200.5010001000000000
..........................................................................................................................................................................................................................................................................TTTTT-TGAACCC-TCAAA-ACCCTACCC.................................................................................................................................26200.45903600000000
..........................................................................................................................................................................................................................................................................TTTTT-TGAACCC-TCAAA-ACCCTACCCC................................................................................................................................27200.35704300000000
....................................................................................................................................................................................................................................................................AC-ACTTTTTT-TGAACCC-TCAAA-ACCC......................................................................................................................................2630.33101000000000
.........................................................................................................................................................................................................................................................................TTTTTT-TGAACCC-TCAAA-ACCCTACC..................................................................................................................................26200.25500500000000
...........................................................................................................................................................CTATATCTTTGTGAGTTTTGCTCCG....................................................................................................................................................................................................................................................25200.25505000000000
.............................................................................................................................................................................................................................................................................TT-TGAACCC-TCAAA-ACCCTACCCCC--CCCT.........................................................................................................................29200.20403100000000
.......TACC--------------------------------------------------------TGAGGTAGT-CG--TTCG------------------------------------------------AGACCCG............................................................................................................................................................................................................................................................................................2660.17101000000000
............................................................................................................................................................TATATCTTTGTGAGTTTTGCTCCGAT..................................................................................................................................................................................................................................................26200.15303000000000
...........................................................................................................................................................CTATATCTTTGTGAGTTTTGCTCC.....................................................................................................................................................................................................................................................24200.15300300000000
........................................................................................................................................................................................................................................................................CTTTTTT-TGAACCC-TCAAA-ACCCTACC..................................................................................................................................27200.15300300000000
.........................................................................................................................................................................................................................................................................TTTTTT-TGAACCC-TCAAA-ACCCTACCCC................................................................................................................................28200.10201100000000
................................................................................................................................................................TCTTTGTGAGTTTTGCTCCGATTGACC.............................................................................................................................................................................................................................................27200.10200200000000
....................................................................................................................................................................TGTGAGTTTTGCTCCGATTGACTTCC..........................................................................................................................................................................................................................................26200.10200200000000
..........................................................................................................................................................................TTTTGCTCCGATTGACTTCCTATC......................................................................................................................................................................................................................................24200.10200200000000
......................................................................................................................................................................TGAGTTTTGCTCCGATTGACTTCCTATT......................................................................................................................................................................................................................................28200.10201100000000
................................................................................................................................................................................................................................................................................TGAACCC-TCAAA-ACCCTACCCCC--CC...........................................................................................................................25200.10201100000000
.....................................................................................................................................................................................................................................................................C-ACTTTTTT-TGAACCC-TCAAA-ACCCT.....................................................................................................................................26200.10200200000000
................................................................................................................................................................................................................................................................................TGAACCC-TCAAA-ACCCTACCCCC--CCCT.........................................................................................................................27200.10202000000000
...........................................................................................................................................................CTATATCTTTGTGAGTTTTGCTCCGATT.................................................................................................................................................................................................................................................28200.10202000000000
.............................................................................................................................................................................................................................................................................TT-TGAACCC-TCAAA-ACCCTACCCCC--CCC..........................................................................................................................28200.10200200000000
..........................................................................................................................................................................................................................................................................TTTTT-TGAACCC-TCAAA-ACCCTACCCCC--.............................................................................................................................28200.10200200000000
.............................................................................................................................................................................................................................................................................TT-TGAACCC-TCAAA-ACCC......................................................................................................................................18200.05101000000000
....................................................................................................................................................................................................................................................................................CCC-TCAAA-ACCCTACCCCC--CC...........................................................................................................................21200.05101000000000
..........................................................................................................................................................................................................................................................................TTTTT-TGAACCC-TCAAA-ACCCTAC...................................................................................................................................24200.05101000000000
...........................................................................................................................................................................................................................................................................TTTT-TGAACCC-TCAAA-ACCC......................................................................................................................................20200.05101000000000
............................................................................................................................................................TATATCTTTGTGAGTTTTGCTCCGATT.................................................................................................................................................................................................................................................27200.05101000000000
...........................................................................................................................................................................................................................................................................TTTT-TGAACCC-TCAAA-ACCCT.....................................................................................................................................21200.05100100000000
.........................................................................................................................................................................GTTTTGCTCCGATTGACTTCC..........................................................................................................................................................................................................................................21200.05100100000000
...........................................................................................................................................................CTATATCTTTGTGAGTTTTGC........................................................................................................................................................................................................................................................21200.05100010000000
...........................................................................................................................................................................................................................................................................TTTT-TGAACCC-TCAAA-ACCCTACCCCC--CC...........................................................................................................................29200.05100100000000
.............................................................................................................................................................ATATCTTTGTGAGTTTTGCTCCGA...................................................................................................................................................................................................................................................24200.05101000000000
............................................................................................................................................................................................................................................................................TTT-TGAACCC-TCAAA-ACCCTACCCCC--.............................................................................................................................26200.05101000000000
.............................................................................................................................................................................................................................................................................TT-TGAACCC-TCAAA-ACCCTACCCCC--.............................................................................................................................25200.05100100000000
...........................................................................................................................................................CTATATCTTTGTGAGTTTTGCTCCGAC..................................................................................................................................................................................................................................................27200.05100100000000
................................................................................................................................................................................................................................................................................TGAACCC-TCAAA-ACCCTACCCCC--CCCTT........................................................................................................................28200.05100100000000
.........................................................................................................................................................................................................................................................................TTTTTT-TGAACCC-TCAAA-ACCC......................................................................................................................................22200.05101000000000
......................................................................................................................................................................TGAGTTTTGCTCCGATTGACTTCC..........................................................................................................................................................................................................................................24200.05100100000000
...................................................................................................................................................TTCCAAAGCTATATCTTTGTGAGTTTTG.........................................................................................................................................................................................................................................................28200.05101000000000
.........................................................................................................................................................................GTTTTGCTCCGATTGACTTC...........................................................................................................................................................................................................................................20200.05100100000000
...............................................................................................................................................................ATCTTTGTGAGTTTTGCTCCGATTGACT.............................................................................................................................................................................................................................................28200.05101000000000
.............................................................................................................................................................................................................................................................................TT-TGAACCC-TCAAA-ACCCTACCCCC--C............................................................................................................................26200.05101000000000
..................................................................................................................................................................................................................................................................................AACCC-TCAAA-ACCCTACCCCC--CCCT.........................................................................................................................25200.05101000000000
...........................................................................................................................................................................................................................................................................TTTT-TGAACCC-TCAAA-ACCCTACCC.................................................................................................................................25200.05100100000000
...................................................................................................................................................................TTGTGAGTTTTGCTCCGAT..................................................................................................................................................................................................................................................19200.05101000000000
...........................................................................................................................................................CTATATCTTTGTGAGTTTTGCT.......................................................................................................................................................................................................................................................22200.05100100000000
.....................................................................................................................................................................................................................................................................C-ACTTTTTT-TGAACCC-TCA.............................................................................................................................................19200.05101000000000
droEre2
ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATGGTGA-AGCCCACTGTGTATATTTGCCTACCGTA--TGCCTATAAAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................GA-AGCCCACTGTGTATATTTGC.......................2211.0010000010
...G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATGGTGA-AGCCCACTGT.................................2111.0010000100
dp5
ACTTCCCTTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGTGA-AGCCGACTGTCTACATTTGCCTGCCGTA--TGCGTACAA-GATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCTGCCGTA--TGCGTACA.....2111.0010100000000
droPer2
ACTTCCCTTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGGTGA-AGCCGACTGTCTACATTTGCCTGCCGTA--TGCGTACAA-GATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ACACCCAAAAATC---------------------------------------------------T--AATATA-AAACG--GTCGG------CCG--------ACCTGCGTTCAACTGC------------------------------------CCATAACTTCACAAGTTTTACTCGGATTGATATAAAATTTTAACACACTAT----TCTTAAGATGTTGTGTATGAAGAA----AAAAT---AT--AT-AAAAAAAAATT-TTTTTTT-TAATGT-TTAAT-ACTATACC--T--CTCTTAAC--------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................AAGATGTTGTGTATGAAGAA----AAA.......................................................................................................................................................................................2311.00101000
.....CAAAAATC---------------------------------------------------T--AATATA-AAACG--GTCGG------C...........................................................................................................................................................................................................................................................................................................................................26170.18301020
........................................................................................................CCTGCGTTCAACTGC------------------------------------CCATAACTTCA..................................................................................................................................................................................................................................................................26190.16303000
..............................................................................................G--------ACCTGCGTTCAACTGC------------------------------------CCATAACT.....................................................................................................................................................................................................................................................................25190.11201010
..............................................................................................G--------ACCTGCGTTCAACTGC------------------------------------CCATAACTTCA..................................................................................................................................................................................................................................................................28120.08100010
.......................................................................TA-AAACG--GTCGG------CCG--------ACCTGCGTTCA......................................................................................................................................................................................................................................................................................................................26130.08100010
............C---------------------------------------------------T--AATATA-AAACG--GTCGG------CCG--------ACCTGC...........................................................................................................................................................................................................................................................................................................................27130.08101000
.......................................................................TA-AAACG--GTCGG------CCG--------ACCTGCGTT........................................................................................................................................................................................................................................................................................................................24130.08101000
....................................................................................GG------CCG--------ACCTGCGTTCAACTGC------------------------------------CCATAACT.....................................................................................................................................................................................................................................................................29130.08101000
....................................................................................GG------CCG--------ACCTGCGTTCAACTGC------------------------------------CC...........................................................................................................................................................................................................................................................................23140.07101000
.........AATC---------------------------------------------------T--AATATA-AAACG--GTCGG------CCG--------AC...............................................................................................................................................................................................................................................................................................................................26160.06100010
.........AATC---------------------------------------------------T--AATATA-AAACG--GTCGG------CCG--------A................................................................................................................................................................................................................................................................................................................................25170.06101000
..........ATC---------------------------------------------------T--AATATA-AAACG--GTCGG------CC..........................................................................................................................................................................................................................................................................................................................................22170.06101000
......AAAAATC---------------------------------------------------T--AATATA-AAACG--GTCGG------C...........................................................................................................................................................................................................................................................................................................................................25180.06100010
..........ATC---------------------------------------------------T--AATATA-AAACG--GTCGG------C...........................................................................................................................................................................................................................................................................................................................................21190.05101000
.............................................................................................................GTTCAACTGC------------------------------------CCATAACTT....................................................................................................................................................................................................................................................................19200.05101000
........................................................................................................CCTGCGTTCAACTGC------------------------------------CCATAACTT....................................................................................................................................................................................................................................................................24200.05101000
........................................................................................................CCTGCGTTCAACTGC------------------------------------CCATAACT.....................................................................................................................................................................................................................................................................23200.05100010
.........................................................................................................CTGCGTTCAACTGC------------------------------------CCATAACTT....................................................................................................................................................................................................................................................................23200.05101000
..........................................................................................................TGCGTTCAACTGC------------------------------------CCATAACTTCA..................................................................................................................................................................................................................................................................24200.05101000
droVir3
ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATGTTA-AGCCGACGCTTTATATATGCCTACCATA--TGACTATCG-CCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................TATATATGCCTACCATA--TGACTATCG-CC.2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TA-AGCCGACGCTTTATATATGCCTACCA.................2811.001000000000000000000000000000001000000000000000000000000000000000
...G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATGTTA-AGCCGAC....................................1811.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATACTCACATGAT---------------------------------------------------T--TA---------------------------------------CTTACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTGTAA-AGCCCACGGTTTATATTCGATTGCCATA--TGATTTTGA-CTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................TAA-AGCCCACGGTTTATATTCG........................2211.001100000
droGri2
ACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATTGTAA-AGCCCACGGTCAACATTTGTCTACCGTA--TGACG-----AAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 11:00 PM