ID:

dan_667

 Coordinate:

scaffold_12916:11875886-11875943 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.1 -3.9 -3.9

Flybase annnotation

exon [dana_GLEANR_16377:1]; exon [dana_GLEANR_16377:2]; CDS [Dana\GF15612-cds]; CDS [Dana\GF15612-cds]; intron [Dana\GF15612-in]

No Repeatable elements found

mature
  1. scaffold_2050:1172-1196 -
  2. scaffold_2050:1362-1386 -
  3. scaffold_2051:1037-1061 -
  4. dan_667  scaffold_12916:11875918-11875942 +
  5. dan_900  scaffold_12943:965193-965217 +
star

Sense Strand Reads

##################################################----------------------------------------------------------##################################################
CACAACGGCACCTCATGCCTGCTCAGTCAGGAGGTAAAGGATCTGTACAGGTAAGCCATCCAACACTCCAAACTAGAGGCTCTTACTTACTCACTTGTTCATCGGCAGATCCCTCTACACTGCATCGAAACAACTGGACGAGGCGAAGAAGAATGTAC
**************************************************...((((.((...............))))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V106
head
 V105
male body		 V055
head
......................................................................................TTACTCACTTGTTCATCGGCAGA................................................. 23 0 5 2.00 10 4 4 2 0 0 0
.........................GTCTGGCGGTAAAGGATCTGA................................................................................................................ 21 3 3 1.00 3 1 0 0 2 0 0
................................................................................................GTTCATCGCCAGCTCCCACTACA....................................... 23 3 1 1.00 1 1 0 0 0 0 0
...................TGCTCAGTCAGGAGGTAAAG....................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................AACTGGACGAGGCGAAGAAGA...... 21 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................TACTCACTTGTTCATCGGCAGAT................................................ 23 0 5 0.80 4 2 1 0 0 1 0
..................................................................................TTACTTACTCACTTGTTCATCGGCA................................................... 25 0 5 0.80 4 4 0 0 0 0 0
...................................................................................TACTTACTCACTTGTTCATCGGCAGAT................................................ 27 0 5 0.80 4 4 0 0 0 0 0
...................................................................................TACTTACTCACTTGTTCATCGGCAGA................................................. 26 0 5 0.60 3 2 0 0 0 1 0
......................................................................................TTACTCACTTGTTCATCGGCAGAT................................................ 24 0 5 0.60 3 2 1 0 0 0 0
......................................................................................TTACTCACTTGTTCATCGGCAG.................................................. 22 0 5 0.60 3 1 1 0 0 1 0
..................................................................................TTACTTACTCACTTGTTCATCGGC.................................................... 24 0 5 0.60 3 1 2 0 0 0 0
.........................GTCTGGCGGTAAAGGATCTG................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0
........................................................................................ACTCACTTGTTCATCGGCAGAT................................................ 22 0 5 0.40 2 2 0 0 0 0 0
..................................................................................TTACTTACTCACTTGTTCATCGGCAGA................................................. 27 0 5 0.40 2 2 0 0 0 0 0
.......................................................................................TACTCACTTGTTCATCGGCAGA................................................. 22 0 5 0.40 2 2 0 0 0 0 0
...................................................................................TACTTACTCACTTGTTCATCGGCA................................................... 24 0 5 0.40 2 2 0 0 0 0 0
.....................................................................................CTTACTCACTTGTTCATCGGCAGAT................................................ 25 0 5 0.40 2 2 0 0 0 0 0
...............................................................................CTCTTACTTACTCACTTGTTCATCGG..................................................... 26 0 5 0.40 2 2 0 0 0 0 0
...............................................................................CTCTTACTTACTCACTTGTTCATCGGCA................................................... 28 0 5 0.40 2 2 0 0 0 0 0
...........................................................................................................................................GAGGCGAAGAAGGACGTA. 18 2 6 0.33 2 2 0 0 0 0 0
.....................................................................AAACTAGAGGCTCTTACTTACTCACTTG............................................................. 28 0 4 0.25 1 1 0 0 0 0 0
....................................................................................ACTTACTCACTTGTTCATCGGCAG.................................................. 24 0 5 0.20 1 1 0 0 0 0 0
......................................................................................TTACTCACTTGTTCATCGGCAGGT................................................ 24 1 5 0.20 1 1 0 0 0 0 0
............................................................................AGGCTCTTTCTTACTCACTTGTTCA......................................................... 25 1 5 0.20 1 1 0 0 0 0 0
......................................................................................TGACTCACTTGTTCATCGGCAGAT................................................ 24 1 5 0.20 1 0 1 0 0 0 0
..................................................................................TTACTTACTCACTTGTTCATCGG..................................................... 23 0 5 0.20 1 1 0 0 0 0 0
...............................................................................CTCTTACTGACTCACTTGTTCATCGGC.................................................... 27 1 5 0.20 1 1 0 0 0 0 0
....................................................................................ACTTACTCACTTGTTCATCGGCAGA................................................. 25 0 5 0.20 1 1 0 0 0 0 0
.......................................................................................TACTCACTTGTTCATCGGCAG.................................................. 21 0 5 0.20 1 1 0 0 0 0 0
..................................................................................TTACTTACGCACTTGTTCATCGGCAG.................................................. 26 1 5 0.20 1 1 0 0 0 0 0
...................................................................................TACTTACTCACTTGTTCATCGGC.................................................... 23 0 5 0.20 1 0 1 0 0 0 0
.....................................................................................CTTACTCACTTGTTCATCGGCA................................................... 22 0 5 0.20 1 1 0 0 0 0 0
......................................................................................TTATTCACTTGTTCATCGGCAGA................................................. 23 1 5 0.20 1 0 1 0 0 0 0
..................................................................................TTATTTACTCACTTGTTCATCGGC.................................................... 24 1 5 0.20 1 0 1 0 0 0 0
..................................................................................TTACTTACTCACTTGTTCATCGGCAG.................................................. 26 0 5 0.20 1 1 0 0 0 0 0
...................................................................................TACTTACTCACTTGTTCATCG...................................................... 21 0 5 0.20 1 1 0 0 0 0 0
......................................................................................TTACTCACTTGTTCATCGGCAGAC................................................ 24 1 5 0.20 1 0 1 0 0 0 0
...................................................................................TACTTACTCACTTGTTCATCGTCA................................................... 24 1 5 0.20 1 0 0 1 0 0 0
..................................................................................TTACTTACTCACTTGTTCATCG...................................................... 22 0 5 0.20 1 1 0 0 0 0 0
..................................................................................TTACTTACTCACTTGTTCATC....................................................... 21 0 5 0.20 1 0 1 0 0 0 0
................................................................................TCTTACTTACTCACTTGTTCATCGG..................................................... 25 0 5 0.20 1 1 0 0 0 0 0
...................................................................................TACTTACTCACTTGTTCATCGGCAG.................................................. 25 0 5 0.20 1 1 0 0 0 0 0
..................................................................................TGACTTACTCACTTGTTCATCGGC.................................................... 24 1 5 0.20 1 0 1 0 0 0 0
....................................................................................ACTTACTCACTTGTTCATCGGCA................................................... 23 0 5 0.20 1 0 1 0 0 0 0
..................................................................................TTACTTACGCACTTGTTCATCGGC.................................................... 24 1 5 0.20 1 1 0 0 0 0 0
......................................................................................TGATTCACTTGTTCATCGGCAGA................................................. 23 2 5 0.20 1 0 1 0 0 0 0
...............................................................................CTCTTACTTACTCACTTGTTCATCGGC.................................................... 27 0 5 0.20 1 1 0 0 0 0 0
....................................................................................ACTTACTCACTTGTTCATCGGCAGAT................................................ 26 0 5 0.20 1 1 0 0 0 0 0
.....................................................................................CTTACTCACTTGTTCATCGGCAGA................................................. 24 0 5 0.20 1 0 1 0 0 0 0
....................................................................CAAACTAGAGGCTCTTACT....................................................................... 19 0 7 0.14 1 1 0 0 0 0 0
...................................................................CCAAACTAGAGGCTCTTACT....................................................................... 20 0 7 0.14 1 1 0 0 0 0 0
.....................................................AGCCATCCAACACACCAAACTAGAGGCT............................................................................. 28 1 7 0.14 1 1 0 0 0 0 0
......................................................GCCATCCAACACACCAAACTAGAG................................................................................ 24 1 7 0.14 1 0 1 0 0 0 0
.........................................................................................CTCGGTTGTTCATCGGTAGA................................................. 20 3 7 0.14 1 0 0 0 1 0 0
....................................................................CAAACTAGAGGCTCTTACTTACTCA................................................................. 25 0 7 0.14 1 1 0 0 0 0 0
...........................................................................GAGGCTCTTACTTACTCACT............................................................... 20 0 8 0.13 1 0 1 0 0 0 0
...............................AGGTGATGGATCTGTACA............................................................................................................. 18 2 14 0.07 1 0 0 0 0 0 1
........................................................................CTAGAGACTCTTTCTGACTC.................................................................. 20 3 17 0.06 1 0 1 0 0 0 0

Anti-sense strand reads

GTGTTGCCGTGGAGTACGGACGAGTCAGTCCTCCATTTCCTAGACATGTCCATTCGGTAGGTTGTGAGGTTTGATCTCCGAGAATGAATGAGTGAACAAGTAGCCGTCTAGGGAGATGTGACGTAGCTTTGTTGACCTGCTCCGCTTCTTCTTACATG
**************************************************...((((.((...............))))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V039
embryo
 V055
head
 V106
head
.......................................................................TGATCTCCGAGAATGAATGAGTGAAC............................................................. 26 0 4 7.75 31 14 9 4 4 0 0
........................................................................GATCTCCGAGAATGAATGAGTGAAC............................................................. 25 0 4 4.25 17 7 9 1 0 0 0
...................................................................GGTTTGATCTCCGAGAATGAATGAG.................................................................. 25 0 7 4.14 29 2 9 12 5 0 1
...................................................................GGTTTGATCTCCGAGAATGAATGAGT................................................................. 26 0 7 3.29 23 2 16 4 1 0 0
......................................................................TTGATCTCCGAGAATGAATGAGTGAAC............................................................. 27 0 4 3.00 12 3 6 3 0 0 0
...........................................................................CTCCGAGAATGAATGAGTGAACAAGT......................................................... 26 0 5 2.40 12 5 3 2 0 0 2
.......................................................................TGATCTCCGAGAATGAATGAGTGAA.............................................................. 25 0 7 1.86 13 6 3 3 1 0 0
..........................................................................TCTCCGAGAATGAATGAGTGAACAAG.......................................................... 26 0 4 1.75 7 4 0 2 0 0 1
......................................................................TTGATCTCCGAGAATGAATGAGTGAA.............................................................. 26 0 7 1.43 10 6 3 0 1 0 0
............................................................................TCCGAGAATGAATGAGTGAACAAGT......................................................... 25 0 5 1.40 7 6 0 0 0 0 1
..........................................................................TCTCCGAGAATGAATGAGTGAACAAGT......................................................... 27 0 4 1.25 5 4 0 1 0 0 0
......................................TCTAGACATGTCCAGACGGTAG.................................................................................................. 22 3 1 1.00 1 0 0 0 0 1 0
.............................................................................CCGAGAATGAATGAGTGAACAAGT......................................................... 24 0 5 0.80 4 3 0 1 0 0 0
.............................................................................CCGAGAATGAATGAGTGAACAAGTAG....................................................... 26 0 5 0.80 4 3 1 0 0 0 0
.......................................................................CGATCTCCGAGAATGAATGAGTGAAC............................................................. 26 1 4 0.75 3 3 0 0 0 0 0
.........................................................................ATCTCCGAGAATGAATGAGTGAACAAGT......................................................... 28 0 4 0.75 3 0 2 1 0 0 0
..................................................................CGGTTTGATCTCCGAGAATGAATGAG.................................................................. 26 1 7 0.71 5 4 0 1 0 0 0
....................................................................GTTTGATCTCCGAGAATGAATGAG.................................................................. 24 0 7 0.57 4 0 2 1 0 1 0
...................................................................GGTTTGATCTCCGAGAATGAATGAGTG................................................................ 27 0 7 0.57 4 0 2 2 0 0 0
..........................................................................TCTCCGAGAATGAATGAGTGAACA............................................................ 24 0 4 0.50 2 1 0 0 0 1 0
.........................................................................ATCTCCGAGAATGAATGAGTGAAC............................................................. 24 0 4 0.50 2 0 0 0 1 1 0
...........................GTTCTCCACTGCCTAGACATG.............................................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0
..........................................................................TCTCCGAGAATGAATGAGTGAAC............................................................. 23 0 4 0.50 2 2 0 0 0 0 0
...................................................................GGTTTGATCTCCGAGAATGAATGA................................................................... 24 0 7 0.43 3 0 3 0 0 0 0
....................................................................GTTTGATCTCCGAGAATGAATGAGTGA............................................................... 27 0 7 0.43 3 0 3 0 0 0 0
.............................................................................CCGAGAATGAATGAGTGAACAAGTA........................................................ 25 0 5 0.40 2 2 0 0 0 0 0
..............................................................................CGAGAATGAATGAGTGAACAAGTAG....................................................... 25 0 5 0.40 2 0 0 2 0 0 0
............................................................................TCCGAGAATGAATGAGTGAACAAGTA........................................................ 26 0 5 0.40 2 2 0 0 0 0 0
.........................................................................................GAGTGAACAAGTAGCCGT................................................... 18 0 5 0.40 2 0 2 0 0 0 0
............................................................................CCCGAGAATGAATGAGTGAACAAGT......................................................... 25 1 5 0.40 2 2 0 0 0 0 0
............................................................................TCCGAGAATGAATGAGTGAACAAGTAG....................................................... 27 0 5 0.40 2 1 0 1 0 0 0
..........................................................................TCTCCGAGAATGAATGAGTGAA.............................................................. 22 0 7 0.29 2 1 0 0 1 0 0
........................................................................GATCTCCGAGAATGAATGAGTGAA.............................................................. 24 0 7 0.29 2 1 1 0 0 0 0
...................................................................GTTTTGATCTCCGAGAATGAATGAGT................................................................. 26 1 7 0.29 2 0 0 0 2 0 0
......................................................................TTGATCTCCGAGAATGAAT..................................................................... 19 0 7 0.29 2 0 2 0 0 0 0
.........................................................................TGATCCGAGAATGAATGAGTGAAC............................................................. 24 3 4 0.25 1 1 0 0 0 0 0
......................................................................TTGATCTCCGAGAATGAAGGAGTGAAC............................................................. 27 1 4 0.25 1 0 1 0 0 0 0
.....................................................................TTTGATCTCCGAGAATGAATGAGTGAAC............................................................. 28 0 4 0.25 1 0 1 0 0 0 0
..........................................................................TCTCCCAGAATGAATGAGTGAACAAG.......................................................... 26 1 4 0.25 1 0 0 1 0 0 0
........................................................................GATCTCCGAGAATGAATGAGTGAACAAG.......................................................... 28 0 4 0.25 1 0 1 0 0 0 0
......................................................................TTGATCTCCGACAATGAATGAGAGAAC............................................................. 27 2 4 0.25 1 0 0 0 1 0 0
..........................................................................CCTCCGAGAATGAATGAGTGAACAAGT......................................................... 27 1 4 0.25 1 1 0 0 0 0 0
........................................................................GATCTCCGAGAATGAACGAGTGAAC............................................................. 25 1 4 0.25 1 0 1 0 0 0 0
..........................................................................TCTCCGAGAAAGAATGAGTGAACAAG.......................................................... 26 1 4 0.25 1 0 0 1 0 0 0
..........................................................................TCTCCGAGAATGAATGAGTGAACAATT......................................................... 27 1 4 0.25 1 1 0 0 0 0 0
..........................................................................CCTCCGAGAATGAATGAGTGAAC............................................................. 23 1 4 0.25 1 1 0 0 0 0 0
.............................................................................CCGAGAATGAATGAGTGAACTAGTAG....................................................... 26 1 5 0.20 1 1 0 0 0 0 0
...........................................................................CTCCGAGGATGAATGAGTGAACAAG.......................................................... 25 1 5 0.20 1 0 0 1 0 0 0
.............................................................................CCGAGAATGAATGAGTGAACAAGTAGCC..................................................... 28 0 5 0.20 1 0 1 0 0 0 0
.................................................................................GAATGAATGAGTGAACAAGTAGCCGT................................................... 26 0 5 0.20 1 1 0 0 0 0 0
............................................................................TCCGAGAATGAATGAGTGAACA............................................................ 22 0 5 0.20 1 1 0 0 0 0 0
............................................................................CCCGAGAATGAATGAGTGAAC............................................................. 21 1 5 0.20 1 1 0 0 0 0 0
....................................................................................TGAATGAGTGAACAAGTAGCCGTCT................................................. 25 0 5 0.20 1 0 0 1 0 0 0
............................................................................TCCGAGAATGAATGAGTGAACAATT......................................................... 25 1 5 0.20 1 1 0 0 0 0 0
...............................................................................GAGAATGAATGAGTGAACAAGTAGCC..................................................... 26 0 5 0.20 1 0 1 0 0 0 0
............................................................................CCCGAGAATGAATGAGTGAACAATT......................................................... 25 2 5 0.20 1 1 0 0 0 0 0
.....................................................................................GAATGAGTGAACAAGTAGCCGTCT................................................. 24 0 5 0.20 1 0 0 0 1 0 0
...........................................................................CTCCGAGAATGAATGAGTTAACA............................................................ 23 1 5 0.20 1 1 0 0 0 0 0
....................................................................................TGAATGAGTGAACAAGTAGCCGTCTA................................................ 26 0 5 0.20 1 1 0 0 0 0 0
............................................................................TCCGAGAATGAATGAGTGAAC............................................................. 21 0 5 0.20 1 1 0 0 0 0 0
..............................................................................CAAGAATGAATGAGTGAAC............................................................. 19 1 5 0.20 1 0 0 1 0 0 0
...........................................................................CTCCGAGAATGAATGAGTGAACAAG.......................................................... 25 0 5 0.20 1 1 0 0 0 0 0
..............................................................................CGAGAATGAATGAGTGAACAAGTATC...................................................... 26 1 5 0.20 1 1 0 0 0 0 0
............................................................................CCCGAGAATGAATGAGTGAACAAGTA........................................................ 26 1 5 0.20 1 1 0 0 0 0 0
...........................................................................................................CTAGGTTAATGTGACGTAGC............................... 20 3 6 0.17 1 0 0 1 0 0 0
........................................................................GATCTCCGAGAATGAAGGAGTGAA.............................................................. 24 1 7 0.14 1 0 0 0 1 0 0
........................................................................CATCTCCGAGAATGAATGAGTGAA.............................................................. 24 1 7 0.14 1 1 0 0 0 0 0
...................................................................CGTTTGATCTCCGAGAATGAATGAGT................................................................. 26 1 7 0.14 1 1 0 0 0 0 0
......................................................................TTGATCTCCGAGAATGAATG.................................................................... 20 0 7 0.14 1 0 0 1 0 0 0
....................................................................GTTTGATCTCCGAGAATGAATGAGT................................................................. 25 0 7 0.14 1 0 1 0 0 0 0
...................................................................TGTTTGATCTCCGAGAATGAATGAGT................................................................. 26 1 7 0.14 1 0 0 0 1 0 0
.....................................................................TTTGATCTCCGAGAATGAATGAGTGAA.............................................................. 27 0 7 0.14 1 1 0 0 0 0 0
...................................................................GGTTTGATCTCCGAGAATGAATGAGGG................................................................ 27 1 7 0.14 1 1 0 0 0 0 0
.......................................................................TGATCTCCGAGAATTAATGAGTGAA.............................................................. 25 1 7 0.14 1 0 1 0 0 0 0
......................................................................TTGATCTCCGAGAATGAATGAA.................................................................. 22 1 7 0.14 1 0 0 1 0 0 0
....................................................................GTTTGATCTCCGAGAATGAATGAGTGAA.............................................................. 28 0 7 0.14 1 0 1 0 0 0 0
...................................................................GGTTTGATCTCCGAGAATGGATGAG.................................................................. 25 1 7 0.14 1 0 0 0 1 0 0
..................................................................CGGTTTGATCTCCGAGAATGAATCAG.................................................................. 26 2 7 0.14 1 1 0 0 0 0 0
...................................................................GGTTTGATCTCCGAGAATGAAGGAG.................................................................. 25 1 7 0.14 1 1 0 0 0 0 0
......................................................................TTGATCTCCGAGAATGAATGAGTTA............................................................... 25 1 7 0.14 1 1 0 0 0 0 0
..................................................................CGGTTTGATCTCCGAGAATGAATGATT................................................................. 27 2 7 0.14 1 1 0 0 0 0 0
................................................................TGGGGTTTGATCTCCGAGAATGAATGAG.................................................................. 28 1 7 0.14 1 0 0 1 0 0 0
.........................................................................ATCTCCGAGAATGAATGAGTGAA.............................................................. 23 0 7 0.14 1 0 0 1 0 0 0
...................................................................TGTTTGATCTCCGAGAATGAATGAG.................................................................. 25 1 7 0.14 1 0 0 1 0 0 0
......................................................................TTGATCTCCGAGAATGAATGAGTG................................................................ 24 0 7 0.14 1 1 0 0 0 0 0
............................................................GTTGCGTGGTTTGATCTCCGAGAAT......................................................................... 25 2 7 0.14 1 0 0 0 1 0 0
......................................................................TTGATCTCCGAGAATGAATGAGTGGA.............................................................. 26 1 7 0.14 1 1 0 0 0 0 0
...................................................................GGTTTGATCTCCGAGAAGGAATGAGT................................................................. 26 1 7 0.14 1 0 1 0 0 0 0
.......................................................................TGATCTCCGAGAATGAGTGAGTGAA.............................................................. 25 1 7 0.14 1 0 1 0 0 0 0
....................................................................GTTTGATCTCCGAGAATGAATGAGTG................................................................ 26 0 7 0.14 1 0 0 1 0 0 0
...................................................................GGTTTGATCTCCGGGAATGAATGAG.................................................................. 25 1 7 0.14 1 0 1 0 0 0 0
...................................................................GGTTTGATCTCCGAGAATGAATGATT................................................................. 26 1 7 0.14 1 1 0 0 0 0 0
...................................................................GGTTTGATCTCCGAGAATGAATGAGTGA............................................................... 28 0 7 0.14 1 0 1 0 0 0 0
......................................................................TTGATCTCCGAGAATGAATGAGTCAA.............................................................. 26 1 7 0.14 1 1 0 0 0 0 0
...................................................................AGTTTGATCTCCGAGAATGAATGAGTG................................................................ 27 1 7 0.14 1 0 0 1 0 0 0
..................................................................CGGTTTGATCTCCGAGAATGAATGAGT................................................................. 27 1 7 0.14 1 1 0 0 0 0 0
...................................................................GGTTTGATCTCCGAGACTGAATGAG.................................................................. 25 1 7 0.14 1 0 1 0 0 0 0
..................................................................GGTTTTGATCTCCGAGAATGAATGAG.................................................................. 26 2 7 0.14 1 0 1 0 0 0 0
...................................................................GTTTTGATCTCCGAGAATGAATGAGTG................................................................ 27 1 7 0.14 1 0 0 0 1 0 0
...................................................................GGTTTGATCTCCGAGAGTGAATGAG.................................................................. 25 1 7 0.14 1 0 1 0 0 0 0
........................................................................GATCTCCGATAATGAATGAGTGAA.............................................................. 24 1 7 0.14 1 1 0 0 0 0 0
.......................................................................TGATCTCCGAGAATGAATGAGTGGA.............................................................. 25 1 7 0.14 1 1 0 0 0 0 0
.......................................................................TGATCTCCGAGAATGAATGAGTGA............................................................... 24 0 7 0.14 1 0 0 1 0 0 0
...................................................................GTTTTGATCTCCGAGAATGAATGAG.................................................................. 25 1 7 0.14 1 0 0 0 1 0 0
....................................................................GTTTGATCTCCGAGAATGA....................................................................... 19 0 7 0.14 1 0 1 0 0 0 0
................................................................................AGAAAGAAAGAGTGAACAAG.......................................................... 20 2 8 0.13 1 0 0 0 0 0 1
...........................................................................CTCCGAGAATGAGTGAGTGAA.............................................................. 21 1 8 0.13 1 0 1 0 0 0 0
.............................................................................CCGAGAATGAATGAGCGAA.............................................................. 19 1 8 0.13 1 1 0 0 0 0 0
.................................................................................GAAGGAATGAATTAACAAGTA........................................................ 21 3 11 0.09 1 0 1 0 0 0 0
...........................................................................CTCCGACAATGAGCGAGTGA............................................................... 20 3 11 0.09 1 0 0 0 0 1 0
...TCGCAGTGGAGTACGGTCG........................................................................................................................................ 19 3 14 0.07 1 0 0 0 0 1 0
..............................................................................................................GGGGTATGTGCCGTAGCTTT............................ 20 3 15 0.07 1 0 0 0 0 1 0
...........CGATACGGACGAGTCAGT................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0
..................................................................AGAGATGATCTCCGAGAAT......................................................................... 19 3 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:11875836-11875993 + dan_667 CACAA---------------------------------------------CGGCACCTCATGCCTGCTCAGTCAGGAGGTAAAGGATCTGTACAGGTAAGCCATC-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------C-ACTCCAAACTAGAGGCTCTTACTTACT--CACTTGT-TCATCGGCAGATCCCTCTACACTGCATCGAAACAACTGGACGAGGCGAAGAAGAATGTAC
droBip1 scf7180000396769:227810-227971 + CACAA---------------------------------------------CGGCTCCTCCTGCTTGCTTAGCCAGGAGGTTAAGGATCTGTACAGGTAGGTCTAATCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------ATC-CCCTAACTAGAGGCTCTCTATATCTATTACTTCT-ATCTCGGCAGGTCTCTTTACACGGCATCGAAACAGCTGGACGAGGCCAAGAAGAATGTAC
droKik1 scf7180000302236:52826-52981 + GGCAA---------------------------------------------CGGCACT---TGCACCCTCAGCCAGGAGGTAAAGGATCTGTACAGGTAAGGTAAT-TC-CCCCG---------------------------------------C---------------------------------------------------------T-----------------C-------------------------------------------------------------------------------------------ATAACAGCCACCCGCTAACCCTTGCGATT-GCCCCGATAGATCCCTCTACACTGCCTCCAAGCAGCTGGACGACGCCAAAAAGAATGTCC
droFic1 scf7180000454082:159722-159965 + AATAA---------------------------------------------TGGCACC---TGTACCCTCAGCCAGGAGGTAAAGGATCTCTACAGGTAAGAAAAT-AA-TTTTGTAAACGGCGCAGCGGTAGCTGTACTTGCAAGGAATCAGGGCTTAACATGC---------------------------------------AATGAT------T-CCTCCCTG---TCACCT-----CTGCATCGTTTACAA------CCC-----AC-TCCA-T------------AGATTAC-CTTATCACATGCGTAA-A------------------------------------ATCCAAATAGGTCCCTCTACACCGCCTCCAAGCAACTGGATGATGCCAAGAAGAACGTCC
droEle1 scf7180000491338:1514131-1514341 - TGCAG---------------------------------------------CGGCTGT------A-------------------------------------------------------------------------CATGCCCCGATTCATGTCAGTACATGCAAGGATTCAGGTCTGCACATGC-----------------AAGCATTGAGATTGCCTCAGGGAAACTACCG-----CTGCACCGATTACAA------CC---AGCAT-TCCA-TAGAAGAAATCACTGAAGTAAAGTATCAA-------ACT------------------------------------CCCCAAACAGATCCCTCTACACCGCCTCCAAGCAACTGGACGATGCCAAGAAGAATGTCC
droRho1 scf7180000780107:173673-173866 + AATAA---------------------------------------------TGGAACC---TGTACTCTCAGCCAGGAGGTAAAGGATCTGTACAGGTAAGAAAAT-GC-CTTTGTAAACGGA---GCAATGGCTGTACTTGCAA--------------------------------------------------------------------------------------------------------------------CC---AACTC-TGCAGAAGAAGAAACCACTAAATCC-CATATTTT-------ATC------------------------------------TCTCCTACAGATCTCTTTACACCGCCTCGAAGCAACTGGACGATGCCAAGAAGAATGTCC
droBia1 scf7180000302408:2424651-2424891 + GGCAA---------------------------------------------TGGCACC---TGCACCCTCAGCCAGGAGGTAAAGGATCTCTACAGGTAAGAAAAC-GCACTTTGCAAGCCAT---GCGGTTACTATACCTGCCAGGAGTCATGGCTAACCCTGCAGGAAATCATGTTT----------------------------------------CTGCATG---TCA-----------------------------CC---AGCTTCTCTG-TAAGAGACACCACTAACTTC-CATATCTGAA-----TCC------------------------------------CACCATTCAGATCCCTGTACACCGCCTCCAAGCAGCTGGACGACGCCAAGAAGAATGTCC
droTak1 scf7180000415399:1426698-1426795 + CTTTA----------------------------------------------------------------AACCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAATCACTAAACTG-CGTATTTA-------AA-------------------------------------CCCTTAATAGATCGCTTTATACCGCCTCCAAGCAACTGGACGACGCCAAGAAGAATGTCC
droEug1 scf7180000409452:464952-465121 - AACAA---------------------------------------------TGGCACC---TGCACCCTCAACCAGGAGGTAAAGGATCTTTATAGGTATGAACT---------------------GTAGCAGCTGTACCTGCAAAGAAT---AACTAA----------------------------------------G-----------------------------------------------------------------------------CTAGAGAAATCACTAA---------------------TC------------------------------GT-TTATCCTTAACAGATCCCTTTACACCGCTTCCAAGCAACTGGATGATGCCAAGAAGAATGTCC
dm3 chr2L:13903668-13903827 - AACAA---------------------------------------------TGGAACC---TGCATCCTCAGCCAGGAGGTAAAGGATCTTTACAGGTAAGGTGTT-A---------------------------------------------------------------------AAG--------------------------------TGAGTGTTACAGGTGGATTACTA-----TAAATCGCAT-----------------------------------------------------CAA-------ATC------------------------------------GTCCATACAGATCCCTCTACACCGCCTCCAAGCAACTGGACGATGCCAAGAGGAATGTGC
droSim2 2l:13480836-13480998 - AACAA---------------------------------------------TGGGACC---TGCGTCCTCAGCCAGGAGGTAAAGGATCTGTACAGGTAAGTTGGC-C---------------------------------------------------------------------ACGT-----GG------------------------TGAGTGCTACAGGTGGACTATTA-----TAAATCGTGT-----------------------------------------------------CAA-------ATC------------------------------------ATCCATACAGGTCCCTCTACACCGCCTCCAAGCAACTGGACGATGCCAAGAGGAATGTGC
droSec2 scaffold_3:160620-160782 - AACAA---------------------------------------------TGGAACC---TGCGTCCTCAGCCAGGAGGTAAAGGATCTGTACAGGTAAGTTGGC-C---------------------------------------------------------------------ACGT-----GG------------------------CGAGTGCTACAGGTGGACTATTA-----TAAATCGTGT-----------------------------------------------------CAA-------ATC------------------------------------ATCCATACAGGTCCCTCTACACCGCCTCTAAGCAACTGGACGATGCCAAGAGGAATGTGC
droYak3 2L:10310066-10310233 - AACAA---------------------------------------------TGGCACC---TGCACCCTCAGCCAGGAGGTGAAGGATCTGTACAGGTAAGGTGGC-C---------------------------------------------------------------------ACGTGAGGTGG------------------------TGAGCGTTGCTCGATGACTAGTA-----ACATCTATAC-----------------------------------------------------CAA-------ATC------------------------------------GCCCATATAGGTCCCTCTACACCGCCTCCAAGCAACTGGATGATGCCAAGAAGAATGTGC
droEre2 scaffold_4929:11569073-11569235 + AACAA---------------------------------------------TGGCACC---TGCACCCTCAGTCAGGAGGTAAAGGATCTGTATAGGTAAGGTGGC-A---------------------------------------------------------------------CCGT-----GG------------------------TGAGCATTGCAGGATGAGTACTA-----ACTCCCATAC-----------------------------------------------------CAA-------AAC------------------------------------GCACAAATAGGTCCCTCTACACCGCCTCCAAGCAACTGGATGATGCCAAGAAGAATGTGC
dp5 4_group4:5797485-5797661 + CACTGCGGA---------------------------AACGGCAACGGCAACGGTGCT---GCCCTGCTTAGCCAGGAGGTGAAGGATTTGTACAGGTAATCCAGA-T---------------------------------------------------------------------TTGTACGAGTGCCAGAAAATGAGCCGAAAGTAATGTGA--------------------------------------------------------------------------------------------------------------------------------------TTGCCTTGGACAGATCCCTGTACACTGCCTCGAAGCAGCTGGATGAAGCCAAGAAAAATGTGC
droPer2 scaffold_16:1112439-1112615 - CACTGCGGA---------------------------AACGGCAACGGCAACGGTGCT---GCCCTGCTTAGCCAGGAGGTGAAGGATTTGTACAGGTAATCCAGA-T---------------------------------------------------------------------TTGTACGAGTGCCAGAAAATGAGCCGAAAGTAATGTGA--------------------------------------------------------------------------------------------------------------------------------------TTGCCTTGGACAGATCCCTGTACACTGCCTCGAAGCAGCTGGATGAAGCCAAGAAAAATGTGC
droWil2 scf2_1100000004521:1685688-1685909 + AATCTGATAAATAATGGACAATGCGTCGGCGGTGGGACAAGCAATGGGAATGAGGGT---TCCCTACTAACTCAGGAGGTTAAAGATTTATATAGGTAAAACTGGTCT----------------------------------------------------------------------CTATGA---------------------------T-----------------GAAATTATTGACTT------------GACACCC------------------CGTGACTAATAAAATT-GGTTTTTC----------------------------------------CCCTC-CACTCCGTAGAACATTATACACTGCCTCTAAGCAATTGGATGATGCGAAAAGAAATGTGC
droVir3 scaffold_12723:869327-869468 - G-----------------------------------------------------------------CTCAGCCAGGAGGTTAAGGATTTATATCGGTAAACTATC-T---------------------------------------------------------------------ATACACATATGTGAGAACAACAACAAAAATTCCTA-------------------------------------------------------------------------------------------TAC-------ATG------------------------------------ATTCTTACAGCGCCTTATACACCGTCTCCAAGCAGCTGGACGATGCCAAGCGAAATGTAC
droMoj3 scaffold_6500:10469337-10469504 + AATAA---------------------------------------------CGGTAAT---TCGGCCCTCAGTCAGGAGGTTAAGGATTTATATCGGTAAAATATT-TG-GCAT---------------------------------------AC---------------------------------------------------------CTAAAGCAGCAGGAACATTTTAA-----TTATTTCCAT-----------TTTAT-------------------------------------T-T-------TG-----------------------------------T-ATTTTGTTAGCGCTTTATATACTGTGTCCAAGCAACTGGACGATGCCAAGCGTAATATTC
droGri2 scaffold_15252:4384009-4384165 - AATAA---------------------------------------------CGGCAAC---ACCTCGCTCAGCCCCGAGGTGAAGGACTTGTATCGGTAACTTATT-AT-TCAT---------------------------------------------------------------------------CA---------------------T-----------------TAAAT-----ATATTTAAAT-----TTAAATGTCGT-------------------------------------C-T-------CTC------------------------------------GCCTCTTTAGCACTTTGTACACCGTTTCCAAGCAGCTCGACGATGCCAAGCGCAACGTCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CACAA---------------------------------------------CGGCACCTCATGCCTGCTCAGTCAGGAGGTAAAGGATCTGTACAGGTAAGCCATC-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------C-ACTCCAAACTAGAGGCTCTTACTTACT--CACTTGT-TCATCGGCAGATCCCTCTACACTGCATCGAAACAACTGGACGAGGCGAAGAAGAATGTACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................TTACT--CACTTGT-TCATCGGCAGA.................................................2352.0010442000
................................................................TGCTCAGTCAGGAGGTAAAG.......................................................................................................................................................................................................................................................................................................................................2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................AACTGGACGAGGCGAAGAAGA......2111.001001000
.................................................................................................................................................................................................................................................................................................................................................TACT--CACTTGT-TCATCGGCAGAT................................................2350.804210010
............................................................................................................................................................................................................................................................................................................................................TTACTTACT--CACTTGT-TCATCGGCA...................................................2550.804400000
.............................................................................................................................................................................................................................................................................................................................................TACTTACT--CACTTGT-TCATCGGCAGAT................................................2750.804400000
.............................................................................................................................................................................................................................................................................................................................................TACTTACT--CACTTGT-TCATCGGCAGA.................................................2650.603200010
................................................................................................................................................................................................................................................................................................................................................TTACT--CACTTGT-TCATCGGCAGAT................................................2450.603210000
................................................................................................................................................................................................................................................................................................................................................TTACT--CACTTGT-TCATCGGCAG..................................................2250.603110010
............................................................................................................................................................................................................................................................................................................................................TTACTTACT--CACTTGT-TCATCGGC....................................................2450.603120000
..................................................................................................................................................................................................................................................................................................................................................ACT--CACTTGT-TCATCGGCAGAT................................................2250.402200000
............................................................................................................................................................................................................................................................................................................................................TTACTTACT--CACTTGT-TCATCGGCAGA.................................................2750.402200000
.................................................................................................................................................................................................................................................................................................................................................TACT--CACTTGT-TCATCGGCAGA.................................................2250.402200000
.............................................................................................................................................................................................................................................................................................................................................TACTTACT--CACTTGT-TCATCGGCA...................................................2450.402200000
...............................................................................................................................................................................................................................................................................................................................................CTTACT--CACTTGT-TCATCGGCAGAT................................................2550.402200000
.........................................................................................................................................................................................................................................................................................................................................CTCTTACTTACT--CACTTGT-TCATCGG.....................................................2650.402200000
.........................................................................................................................................................................................................................................................................................................................................CTCTTACTTACT--CACTTGT-TCATCGGCA...................................................2850.402200000
...............................................................................................................................................................................................................................................................................................................................AAACTAGAGGCTCTTACTTACT--CACTTG..............................................................2840.251100000
..............................................................................................................................................................................................................................................................................................................................................ACTTACT--CACTTGT-TCATCGGCAG..................................................2450.201100000
............................................................................................................................................................................................................................................................................................................................................TTACTTACT--CACTTGT-TCATCGG.....................................................2350.201100000
..............................................................................................................................................................................................................................................................................................................................................ACTTACT--CACTTGT-TCATCGGCAGA.................................................2550.201100000
.................................................................................................................................................................................................................................................................................................................................................TACT--CACTTGT-TCATCGGCAG..................................................2150.201100000
.............................................................................................................................................................................................................................................................................................................................................TACTTACT--CACTTGT-TCATCGGC....................................................2350.201010000
...............................................................................................................................................................................................................................................................................................................................................CTTACT--CACTTGT-TCATCGGCA...................................................2250.201100000
............................................................................................................................................................................................................................................................................................................................................TTACTTACT--CACTTGT-TCATCGGCAG..................................................2650.201100000
.............................................................................................................................................................................................................................................................................................................................................TACTTACT--CACTTGT-TCATCG......................................................2150.201100000
................................................................................................................................................................................................................................................................................................................................................TTACT--CACTTGT-TCATCGGCAGAC................................................2450.201010000
............................................................................................................................................................................................................................................................................................................................................TTACTTACT--CACTTGT-TCATCG......................................................2250.201100000
............................................................................................................................................................................................................................................................................................................................................TTACTTACT--CACTTGT-TCATC.......................................................2150.201010000
..........................................................................................................................................................................................................................................................................................................................................TCTTACTTACT--CACTTGT-TCATCGG.....................................................2550.201100000
.............................................................................................................................................................................................................................................................................................................................................TACTTACT--CACTTGT-TCATCGGCAG..................................................2550.201100000
..............................................................................................................................................................................................................................................................................................................................................ACTTACT--CACTTGT-TCATCGGCA...................................................2350.201010000
.........................................................................................................................................................................................................................................................................................................................................CTCTTACTTACT--CACTTGT-TCATCGGC....................................................2750.201100000
..............................................................................................................................................................................................................................................................................................................................................ACTTACT--CACTTGT-TCATCGGCAGAT................................................2650.201100000
...............................................................................................................................................................................................................................................................................................................................................CTTACT--CACTTGT-TCATCGGCAGA.................................................2450.201010000
..............................................................................................................................................................................................................................................................................................................................CAAACTAGAGGCTCTTACT..........................................................................1970.141100000
.............................................................................................................................................................................................................................................................................................................................CCAAACTAGAGGCTCTTACT..........................................................................2070.141100000
..............................................................................................................................................................................................................................................................................................................................CAAACTAGAGGCTCTTACTTACT--CA..................................................................2570.141100000
.....................................................................................................................................................................................................................................................................................................................................GAGGCTCTTACTTACT--CACT................................................................2080.131010000
droBip1
CACAA---------------------------------------------CGGCTCCTCCTGCTTGCTTAGCCAGGAGGTTAAGGATCTGTACAGGTAGGTCTAATCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------ATC-CCCTAACTAGAGGCTCTCTATATCTATTACTTCT-ATCTCGGCAGGTCTCTTTACACGGCATCGAAACAGCTGGACGAGGCCAAGAAGAATGTACSizeHit CountTotal NormTotal
No Reads
droKik1
GGCAA---------------------------------------------CGGCACT---TGCACCCTCAGCCAGGAGGTAAAGGATCTGTACAGGTAAGGTAAT-TC-CCCCG---------------------------------------C---------------------------------------------------------T-----------------C-------------------------------------------------------------------------------------------ATAACAGCCACCCGCTAACCCTTGCGATT-GCCCCGATAGATCCCTCTACACTGCCTCCAAGCAGCTGGACGACGCCAAAAAGAATGTCCSizeHit CountTotal NormTotal
No Reads
droFic1
AATAA---------------------------------------------TGGCACC---TGTACCCTCAGCCAGGAGGTAAAGGATCTCTACAGGTAAGAAAAT-AA-TTTTGTAAACGGCGCAGCGGTAGCTGTACTTGCAAGGAATCAGGGCTTAACATGC---------------------------------------AATGAT------T-CCTCCCTG---TCACCT-----CTGCATCGTTTACAA------CCC-----AC-TCCA-T------------AGATTAC-CTTATCACATGCGTAA-A------------------------------------ATCCAAATAGGTCCCTCTACACCGCCTCCAAGCAACTGGATGATGCCAAGAAGAACGTCCSizeHit CountTotal NormTotal
No Reads
droEle1
TGCAG---------------------------------------------CGGCTGT------A-------------------------------------------------------------------------CATGCCCCGATTCATGTCAGTACATGCAAGGATTCAGGTCTGCACATGC-----------------AAGCATTGAGATTGCCTCAGGGAAACTACCG-----CTGCACCGATTACAA------CC---AGCAT-TCCA-TAGAAGAAATCACTGAAGTAAAGTATCAA-------ACT------------------------------------CCCCAAACAGATCCCTCTACACCGCCTCCAAGCAACTGGACGATGCCAAGAAGAATGTCCSizeHit CountTotal NormTotal
No Reads
droRho1
AATAA---------------------------------------------TGGAACC---TGTACTCTCAGCCAGGAGGTAAAGGATCTGTACAGGTAAGAAAAT-GC-CTTTGTAAACGGA---GCAATGGCTGTACTTGCAA--------------------------------------------------------------------------------------------------------------------CC---AACTC-TGCAGAAGAAGAAACCACTAAATCC-CATATTTT-------ATC------------------------------------TCTCCTACAGATCTCTTTACACCGCCTCGAAGCAACTGGACGATGCCAAGAAGAATGTCCSizeHit CountTotal NormTotal
No Reads
droBia1
GGCAA---------------------------------------------TGGCACC---TGCACCCTCAGCCAGGAGGTAAAGGATCTCTACAGGTAAGAAAAC-GCACTTTGCAAGCCAT---GCGGTTACTATACCTGCCAGGAGTCATGGCTAACCCTGCAGGAAATCATGTTT----------------------------------------CTGCATG---TCA-----------------------------CC---AGCTTCTCTG-TAAGAGACACCACTAACTTC-CATATCTGAA-----TCC------------------------------------CACCATTCAGATCCCTGTACACCGCCTCCAAGCAGCTGGACGACGCCAAGAAGAATGTCCSizeHit CountTotal NormTotal
No Reads
droTak1
CTTTA----------------------------------------------------------------AACCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAATCACTAAACTG-CGTATTTA-------AA-------------------------------------CCCTTAATAGATCGCTTTATACCGCCTCCAAGCAACTGGACGACGCCAAGAAGAATGTCCSizeHit CountTotal NormTotal
No Reads
droEug1
AACAA---------------------------------------------TGGCACC---TGCACCCTCAACCAGGAGGTAAAGGATCTTTATAGGTATGAACT---------------------GTAGCAGCTGTACCTGCAAAGAAT---AACTAA----------------------------------------G-----------------------------------------------------------------------------CTAGAGAAATCACTAA---------------------TC------------------------------GT-TTATCCTTAACAGATCCCTTTACACCGCTTCCAAGCAACTGGATGATGCCAAGAAGAATGTCCSizeHit CountTotal NormTotal
No Reads
dm3
AACAA---------------------------------------------TGGAACC---TGCATCCTCAGCCAGGAGGTAAAGGATCTTTACAGGTAAGGTGTT-A---------------------------------------------------------------------AAG--------------------------------TGAGTGTTACAGGTGGATTACTA-----TAAATCGCAT-----------------------------------------------------CAA-------ATC------------------------------------GTCCATACAGATCCCTCTACACCGCCTCCAAGCAACTGGACGATGCCAAGAGGAATGTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................CAACTGGACGATGCCAAGAGGA......2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AATCGCAT-----------------------------------------------------CAA-------ATC------------------------------------GTCCATA.....................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AACTGGACGATGCCAAGAGGAATGTGC2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACGATGCCAAGAGGAATGTGC2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATCTTTACAGGTAAGGTGTT-A---------------------------------------------------------------------AAG--------------------------------TG......................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAGAGGAATGTGC1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TCAGCCAGGAGGTAAAGGATA...................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACGATGCCAAGAGGAATGTG.2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................................................CCTCAGCCAGGAGGTAAA........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CTGGACGATGCCAAGAGGAATGTG.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................CAGCCAGGAGGTAAAGGA.....................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AACTGGACGATGCCAAGAGGAATGT..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................GTAAGGTGTT-A---------------------------------------------------------------------AAG--------------------------------TGAGTGTT................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................TTTACAGGTAAGGTGTT-A---------------------------------------------------------------------AAG--------------------------------TGAG....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGCAACTGGACGATGCCAAG..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GGACGATGCCAAGAGGAAT....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................GCAT-----------------------------------------------------CAA-------ATC------------------------------------GTCCATACAG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TCAGCCAGGAGGTAAAGGATCTT.................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TGCATCCTCAGCCAGGAGGTAA.........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AA---------------------------------------------TGGAACC---TGCATCCTCAG....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCAAGAGGAATGT..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................CTACACCGCCTCCAAGCAACT.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CAGGAGGTAAAGGATCTTT................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................AAGCAACTGGACGATGCCAAGAGGA......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TCCCTCTACACCGCCTCCAAGCAAC........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AA---------------------------------------------TGGAACC---TGCATCCTCAGC...................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CCCTCTACACCGCCTCCAAGC...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................GGACGATGCCAAGAGGAATGT..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................ACGATGCCAAGAGGAATGT..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AACTGGACGATGCCAAGAGGAATGTG.2611.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAGAGGAATGTGC1811.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................ATCGCAT-----------------------------------------------------CAA-------ATC------------------------------------GTCCATACAG..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTACTA-----TAAATCGCAT-----------------------------------------------------CAA-------ATC------------------------------------GTC.........................................................2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GCATCCTCAGCCAGGAGGTAAA........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CC---TGCATCCTCAGCCAGGAGGTAAA........................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CTGGACGATGCCAAGAGGAA.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................ACTA-----TAAATCGCAT-----------------------------------------------------CAA-------ATC------------------------------------GTC.........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................GCCAGGAGGTAAAGGATCTTTACAGG...........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................AAGGTGTT-A---------------------------------------------------------------------AAG--------------------------------TGAGTG..................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..................................................TGGAACC---TGCATCCTCAGCCA.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....A---------------------------------------------TGGAACC---TGCATCCTCA.....................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TGCATCCTCAGCCAGGAGGTAAAG.......................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CATACAGATCCCTCTACTGA.....................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
droSim2
AACAA---------------------------------------------TGGGACC---TGCGTCCTCAGCCAGGAGGTAAAGGATCTGTACAGGTAAGTTGGC-C---------------------------------------------------------------------ACGT-----GG------------------------TGAGTGCTACAGGTGGACTATTA-----TAAATCGTGT-----------------------------------------------------CAA-------ATC------------------------------------ATCCATACAGGTCCCTCTACACCGCCTCCAAGCAACTGGACGATGCCAAGAGGAATGTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................GAGGTAAAGGATCTGTACAGGT..........................................................................................................................................................................................................................................................................................................................2212.00220000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CTACACCGCCTCCAAGCAACTGGACG..................2611.00101000000000000000
...............................................................................TAAAGGATCTGTACAGGTAAG.......................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................GTGT-----------------------------------------------------CAA-------ATC------------------------------------ATCCATACA...................................................1911.00100001000000000000
............................................................TGCGTCCTCAGCCAGGAGGTAAA........................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
....................................................GGACC---TGCGTCCTCAGCCAGGAGGTAAAG.......................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
droSec2
AACAA---------------------------------------------TGGAACC---TGCGTCCTCAGCCAGGAGGTAAAGGATCTGTACAGGTAAGTTGGC-C---------------------------------------------------------------------ACGT-----GG------------------------CGAGTGCTACAGGTGGACTATTA-----TAAATCGTGT-----------------------------------------------------CAA-------ATC------------------------------------ATCCATACAGGTCCCTCTACACCGCCTCTAAGCAACTGGACGATGCCAAGAGGAATGTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................C---TGCGTCCTCAGCCAGGAGGTAAAGGA.....................................................................................................................................................................................................................................................................................................................................2711.0010100
droYak3
AACAA---------------------------------------------TGGCACC---TGCACCCTCAGCCAGGAGGTGAAGGATCTGTACAGGTAAGGTGGC-C---------------------------------------------------------------------ACGTGAGGTGG------------------------TGAGCGTTGCTCGATGACTAGTA-----ACATCTATAC-----------------------------------------------------CAA-------ATC------------------------------------GCCCATATAGGTCCCTCTACACCGCCTCCAAGCAACTGGATGATGCCAAGAAGAATGTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................CGCCTCCAAGCAACTGGATGATGCCAAGA.........2912.00200000000002
..................................................................................................................................................................................................................................................................................................................................................................................................CTGGATGATGCCAAGAAGAATGT..2311.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................AACTGGATGATGCCAAGAAGAATGTGC2711.00100000010000
..................................................................CTCAGCCAGGAGGTGAAGG......................................................................................................................................................................................................................................................................................................................................1911.00101000000000
......................................................................................................GGC-C---------------------------------------------------------------------ACGTGAGGTGG------------------------TGAGCGTTGC..............................................................................................................................................................................................2511.00100000010000
.................................................................CCTCAGCCAGGAGGTGAAGGATC...................................................................................................................................................................................................................................................................................................................................2311.00100100000000
droEre2
AACAA---------------------------------------------TGGCACC---TGCACCCTCAGTCAGGAGGTAAAGGATCTGTATAGGTAAGGTGGC-A---------------------------------------------------------------------CCGT-----GG------------------------TGAGCATTGCAGGATGAGTACTA-----ACTCCCATAC-----------------------------------------------------CAA-------AAC------------------------------------GCACAAATAGGTCCCTCTACACCGCCTCCAAGCAACTGGATGATGCCAAGAAGAATGTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................GTAAAGGATCTGTATAGGT..........................................................................................................................................................................................................................................................................................................................1911.0010000100
...........................................................................GAGGTAAAGGATCTGTATAG............................................................................................................................................................................................................................................................................................................................2011.0010000100
.............................................................GCACCCTCAGTCAGGAGGTAAAGG......................................................................................................................................................................................................................................................................................................................................2411.0011000000
..................................................................CTCAGTCAGGAGGTAAAGGATCTGTATA.............................................................................................................................................................................................................................................................................................................................2811.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................AAGCAACTGGATGATGCCAAGAAGA......2511.0010000010
...................................................GGCACC---TGCACCCTCAGTCAGGA..............................................................................................................................................................................................................................................................................................................................................2311.0011000000
dp5
CACTGCGGA---------------------------AACGGCAACGGCAACGGTGCT---GCCCTGCTTAGCCAGGAGGTGAAGGATTTGTACAGGTAATCCAGA-T---------------------------------------------------------------------TTGTACGAGTGCCAGAAAATGAGCCGAAAGTAATGTGA--------------------------------------------------------------------------------------------------------------------------------------TTGCCTTGGACAGATCCCTGTACACTGCCTCGAAGCAGCTGGATGAAGCCAAGAAAAATGTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................AACGGTGCT---GCCCTGCTTAGCCAGGA..............................................................................................................................................................................................................................................................................................................................................2611.0010100000000
....................................................GTGCT---GCCCTGCTTAGCCAGGAG.............................................................................................................................................................................................................................................................................................................................................2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................CAGATCCCTGTACACTGCCTC................................2111.0010100000000
...................................................................................................................................................................................TACGAGTGCCAGAAAATG......................................................................................................................................................................................................................1811.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................AGATCCCTGTACACTGCCTCGA..............................2211.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................GCCTCGAAGCAGCTGGATGAAGCCAAGAA........2911.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................CAGATCCCTGTACACTGCCTCGAAGCA..........................2711.0010100000000
droPer2
CACTGCGGA---------------------------AACGGCAACGGCAACGGTGCT---GCCCTGCTTAGCCAGGAGGTGAAGGATTTGTACAGGTAATCCAGA-T---------------------------------------------------------------------TTGTACGAGTGCCAGAAAATGAGCCGAAAGTAATGTGA--------------------------------------------------------------------------------------------------------------------------------------TTGCCTTGGACAGATCCCTGTACACTGCCTCGAAGCAGCTGGATGAAGCCAAGAAAAATGTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................GATCCCTGTACACTGCCTCGAAGC...........................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................ACAGATCCCTGTACACTGCCTCGAAG............................2611.001010000
........................................................T---GCCCTGCTTAGCCAGGAGGTGAAGG......................................................................................................................................................................................................................................................................................................................................2611.001000001
.............................................................................................................................................................................................................GTAATGTGA--------------------------------------------------------------------------------------------------------------------------------------TTGCCTTGGAC....................................................2011.001010000
droWil2
AATCTGATAAATAATGGACAATGCGTCGGCGGTGGGACAAGCAATGGGAATGAGGGT---TCCCTACTAACTCAGGAGGTTAAAGATTTATATAGGTAAAACTGGTCT----------------------------------------------------------------------CTATGA---------------------------T-----------------GAAATTATTGACTT------------GACACCC------------------CGTGACTAATAAAATT-GGTTTTTC----------------------------------------CCCTC-CACTCCGTAGAACATTATACACTGCCTCTAAGCAATTGGATGATGCGAAAAGAAATGTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................TGATGCGAAAAGAAATGTGC2012.00200011
..............................GGTGGGACAAGCAATGGGAATGAGG....................................................................................................................................................................................................................................................................................................................................................................2512.00200200
..........ATAATGGACAATGCGTCGGCGGTGGGA......................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATGATGCGAAAAGAAAT....2211.00100100
...................................GACAAGCAATGGGAATGAGGGT---TCC............................................................................................................................................................................................................................................................................................................................................................2511.00100100
................................................................................................................................................................................................................................................................................................................................................................................................AATTGGATGATGCGAAAAG........1911.00100010
............AATGGACAATGCGTCGGCGGTGGGA......................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
AATCTGATAAATAATGGACAATGCGTC................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
........................................................................................................................................................................................................................................................................................................................................................................................CTCTAAGCAATTGGATGATGCG.............2211.00100100
................................TGGGACAAGCAATGGGAATGAGGGT---...............................................................................................................................................................................................................................................................................................................................................................2511.00101000
......ATAAATAATGGACAATGCGT.................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
droVir3
G-----------------------------------------------------------------CTCAGCCAGGAGGTTAAGGATTTATATCGGTAAACTATC-T---------------------------------------------------------------------ATACACATATGTGAGAACAACAACAAAAATTCCTA-------------------------------------------------------------------------------------------TAC-------ATG------------------------------------ATTCTTACAGCGCCTTATACACCGTCTCCAAGCAGCTGGACGATGCCAAGCGAAATGTACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGACGATGCCAAGCG........2112.002000002000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................GCGCCTTATACACCGTCTC................................1912.002000000000000000000000000000000000000000000000000000000000000002
...........................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGCTGGACGATGCCA............2011.001000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................................................................................................................................................................CCAAGCAGCTGGACGATGCC.............2011.001000100000000000000000000000000000000000000000000000000000000000
......................................................................GCCAGGAGGTTAAGGATT...................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AATAA---------------------------------------------CGGTAAT---TCGGCCCTCAGTCAGGAGGTTAAGGATTTATATCGGTAAAATATT-TG-GCAT---------------------------------------AC---------------------------------------------------------CTAAAGCAGCAGGAACATTTTAA-----TTATTTCCAT-----------TTTAT-------------------------------------T-T-------TG-----------------------------------T-ATTTTGTTAGCGCTTTATATACTGTGTCCAAGCAACTGGACGATGCCAAGCGTAATATTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................GCAACTGGACGATGCCAAGC.........2011.001100000
......................................................AAT---TCGGCCCTCAGTCAGGAGGTTA.........................................................................................................................................................................................................................................................................................................................................2511.001100000
droGri2
AATAA---------------------------------------------CGGCAAC---ACCTCGCTCAGCCCCGAGGTGAAGGACTTGTATCGGTAACTTATT-AT-TCAT---------------------------------------------------------------------------CA---------------------T-----------------TAAAT-----ATATTTAAAT-----TTAAATGTCGT-------------------------------------C-T-------CTC------------------------------------GCCTCTTTAGCACTTTGTACACCGTTTCCAAGCAGCTCGACGATGCCAAGCGCAACGTCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:55 PM