dan_666

exon [dana_GLEANR_15030:7]; CDS [Dana\GF14268-cds]; CDS [Dana\GF14268-cds]; exon [dana_GLEANR_15030:6]; intron [Dana\GF14268-in]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

##################################################--------------------------------------------------------------#################--------------------------------- GGCGGACAACATCAAGAACAATGTCCACATTGGCTGGACTGCTTCAGATAGTAAGTCACTATAATTTTAATAATAATTGCATTTTAATTATTAATTGATTTCCTCTTTTCAGAATGTGTTGCTTCTTAACTGGCTATGCTATTTTGTTTTATACAGTTCATT ************************************************..((((((..((((((..(((.........)))..))))))....))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V105 male body	V106 head	V039 embryo
...GGACAACATCAAGAACAATGT..........................................................................................................................................	21	0	1	3.00	3	1	0	2	0	0
....GACAACATCAAGAACAATGT..........................................................................................................................................	20	0	1	3.00	3	0	0	3	0	0
..........ATCAAGAACAATGTCCACATTGGCTGG.............................................................................................................................	27	0	1	2.00	2	1	0	0	1	0
........................CCACATTGGCTGGACTGCTTCA....................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
GGCGGACAACATCAAGAAC...............................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
.........................CACATTGGCTGGACTGCTTCAGAT.................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
.........................CACATTGGCTGGACTGCTTC.....................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
........................CCACATTGGCTGGACTGCTT......................................................................................................................	20	0	1	1.00	1	0	0	0	1	0
.................ACAATGTCGACATTGGCTGGACTGCTTC.....................................................................................................................	28	1	1	1.00	1	1	0	0	0	0
..............AGAACAATGTCCACATTGGCTGGAC...........................................................................................................................	25	0	1	1.00	1	0	1	0	0	0
GGCGGACAACATCAAGAACAAT............................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
..............AGAACAATGTCCACATTGGCTGGA............................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
...............................................................................................................AAATGTGTTGCTTCTTAACTGGCT...........................	24	1	1	1.00	1	0	0	0	0	1
................AACAATGTCCACATTGGCTGGA............................................................................................................................	22	0	1	1.00	1	0	1	0	0	0
........................CCACATTGGCTGGACTGCTTCAGAT.................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
........................CCACATTGGCTGGACTGCTTCAGATAA...............................................................................................................	27	1	1	1.00	1	1	0	0	0	0
.............................................................................................................ATAAATGTGTTGCTTCTTAACTGGC............................	25	3	1	1.00	1	0	1	0	0	0
..........................ACATTGGCTGGACTACTTC.....................................................................................................................	19	1	1	1.00	1	1	0	0	0	0
.........................CACATTGGTTGGACTGCTTCAGA..................................................................................................................	23	1	1	1.00	1	1	0	0	0	0
.................ACAATGTCCACATTGGCTGGA............................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
........................CCATATTGGCTGGACTGCTTCA....................................................................................................................	22	1	1	1.00	1	0	1	0	0	0
..............................................................................................................TAAATGTGTTGCTTCTTAACTGGC............................	24	2	1	1.00	1	0	1	0	0	0
..........................ACATTGGCCGGACTGCTTCAGA..................................................................................................................	22	1	1	1.00	1	1	0	0	0	0
............CAAGAACAATGTCCACATTGGCTGGA............................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
........................CCACATTGGCTGGACTGCT.......................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
.............................................................................................................ATAAATGTGTTGCTTCTTAACT...............................	22	3	5	0.20	1	1	0	0	0	0
.................................................................................TTTTAATTATTTATTGATCACC...........................................................	22	3	11	0.09	1	0	1	0	0	0

CCGCCTGTTGTAGTTCTTGTTACAGGTGTAACCGACCTGACGAAGTCTATCATTCAGTGATATTAAAATTATTATTAACGTAAAATTAATAATTAACTAAAGGAGAAAAGTCTTACACAACGAAGAATTGACCGATACGATAAAACAAAATATGTCAAGTAA ************************************************..((((((..((((((..(((.........)))..))))))....))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo
......................................................................................................................................ATACGAGAAAACAAAATA..........	18	1	3	0.33	1	1	0
.........................................................................................................AAAAGGCTGACACAACGAAG.....................................	20	2	4	0.25	1	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_12916:11870057-11870218 -	dan_666	GGCGGACAACATCAAGAACAATGTCCACATTGGCTGGACTGCTTCAGATAGTAAGTCACT------------A--------TA-----------------------ATTTTAATAATAAT-TG-CATTTTAATT------A-------------T---TAA-T-T----GAT------------------------TTCCTCTTTTCAGAATGTGTTGCTTCTTAACTGGCTA----------------------TGCTATTTTGT-TTTA--TACAGT-TCATT
droBip1	scf7180000396769:221819-221983 -		GGCGGATAACATCAAGAACAATGTCCACATTGGCTGGACTGCTTCAGACAGTAAGTTAAT------------A--------TA------------------TATTTTTTTAAAAA------GG-AATTAT-TCT------A-------------AATATTA-ATT----TAT------------------------TTCTTCTTTTCAGAATGTGTTGCTTCTTAACTGGCAT----------------------TGCTTTT-TGGTTTTA--TTGAGT-TCATT
droKik1	scf7180000302236:47372-47526 -		GGCGGAGAACATCAAGAACAATGTTCACATTGGCTGGACCGCTTCAGATAGTAAGTAGTA---T---------A-ATCTCTGGATTCT------------------------------G-TTT-TACCGTGGTTAATTTC-TTAAA--------------------------------------------------TTATTCATTTCAGAATGCGTAT------AATAT-GAT----------------------GAT-ATGTTGATTTCG--CACAGT-TT-TT
droFic1	scf7180000454082:151925-152087 -		GGCCGAGAACATCAAGAACAATGTCCACATTGGCTGGACTGCTTCAGATAGTAAGTTTTG---C-----------------CT-----------------------TTA-AAATGATCT-TGA-AGATATGTAT------T-------------A---ATT-T-C---AATT------------------------AAACTTATTTCAGAATGTGTGTCTTCTTGAATGAAAA----------------------GACCCGGGTGTTCTTA--CACAGT-TCTTT
droEle1	scf7180000491338:1521846-1522007 +		GGCGGAGAATATCAAAAACAATGTCCACATTGGCTGGACCACTTCAGATAGTAAGTTTGG------------A--------CT-----------------------GTTTAGATTATTC-TAA-AACTTTGATT------A-------------A---TTC-T-A----TT-------------------------TTTTCAATTTCAGAGTGTGTGTCTTCTTGAATGAAAT----------------------GATTTTTGTGTTTTCA--CACTTT-TCTTT
droRho1	scf7180000780107:165874-166032 -		GGCGGAGAATATCAAGAACAATGTCCACATTGGCTGGACCACTTCAGATAGTAAGTTTGG------------A--------CT-----------------------TCTTAAAAATTCC-GAA-TA--ATTTTT------A-------------A---ATG-T-T---ATTT------------------------TTTCTTATTTCAGAATGTGTGTC---TTAAGTGAATT----------------------GATTTTCGTGTTTTCA--CACACT-TCTTT
droBia1	scf7180000302408:2418225-2418386 -		GGCCGAGAACATCAAGAACAATGTCCACATTGGCTGGACTACTTCAGATAGTAAGTTGGC------------A--------GT-----------------------ACCTAAAAAACAA-GAA-AAAGCTGATT------T-------------A---ATA-T-T----GTT------------------------TTCCCCATTTCAGAGTGTGTGTCTTCTTAAT-GGAAT----------------------AATTTCCGCGTTGCCA--CACAGT-TTTTT
droTak1	scf7180000415399:1420339-1420502 -		GGCCGAAAACATCAAGAACAATGTCCACATTGGCTGGACCACTTCAGATAGTAAGTTAGA---T-----------------CT-----------------------TCG-GAAATATCC-TGA-AACCCCGGCT------A-------------A---ATA-A-T---TTTG------------------------TTCCTTTTTTCAGAATGCGTGTCTTCTTAATTGAACT----------------------GATTTTTGTGTTCTCA--CACAGTATTTTT
droEug1	scf7180000409452:470747-470888 +		GGCGGAGAACATCAAGAACAATGTCCACATTGGATGGACCACTTCAGATAGTAAGTTCAA---A-----------------GT-----------------------TCGTCAAAT---AT-GG-CACCCTGGCT------A-------------A---ATC-A-T---CTTG------------------------ATATCTATTTCAGAATGTGTGTCTTCATAAAT-----------------------------------------TA--CACAGT-GATTT
dm3	chr2L:13908979-13909145 +		GGCGGAGAACATTAAGAACAATGTCCACATTGGCTGGACTACTTCAAATAGTAAGTTTTC------------AC-------CT-----------------------TCTTCAAATTGAA-GGATAACTGTGTCT------A-------------A---ATG-T-G----TGT------------------------TTTCTTATTTCAGAATGCGTCTCATCATAATTCAAAT----------------------GATTTTAGTGTTCTCACACACAGT-TCATT
droSim2	2l:13486282-13486445 +		GGCGGAGAACATCAAGAACAATGTCCACATTGGCTGGACTACTTCAAATAGTAAGTTGCC------------GC-------GT-----------------------TCTTGAAATTTAA-GGA-TATCATGTCT------A-------------A---ATG-T-G----TGT------------------------TTTCTAATTTCAGAATGCGTGTCATCATAATTCAAAT----------------------GATTTTAGTGTTCCTA--CACAGT-TCATT
droSec2	scaffold_3:166080-166243 +		GGCGGAGAACATCAAGAACAATGTCCACATCGGCTGGACTACTTCAAATAGTAAGTTGCC------------GA-------GT-----------------------TCTTGAAATTGAA-GGA-TGTCATGTCT------A-------------A---ATG-T-G----AGT------------------------TTTTTAATTTCAGAATGCGTGTCATCATAAATCAAAT----------------------GATTTTAGTGTTTTTA--CACAGT-TCATT
droYak3	2L:10315658-10315823 +		GGCGGAGAACATCAAGAACAATGTCCACATTGGCTGGACCACTTCAAATAGTAAGTCGTA---G-------CAC-------GG-----------------------TCATGGAAAGTAA-GGA-TCACATGTCT------A-------------A---ATG-C-G----TGT------------------------TTTCTAATTTCAGAATGCGTCTCTTCATAAATCACAT----------------------GATTTTAGTGTTCTCA--CACAGT-TGATT
droEre2	scaffold_4929:11563745-11563907 -		GGCGGAGAACATCAAGAACAATGTCCACATTGGCTGGACTACTTCAGATAGTAAGTTTGC------------AC-------GT-----------------------TCATGGAAAATAA-GGA-TATCATGTCT------A-------------A---GTG-G-C----TG-------------------------TTTCTAATTTCAGAATGCGTGTCTTCATAATTCAAAT----------------------GATTTTAGTGTTCTCA--CACACT-TCATT
dp5	Unknown_singleton_1076:735-904 +		GGCGGAGAACATCAAGAACAGTGTTCACATCGGCTGGACCGCTTCAGATAGTAAGTTATA---T-----------------AC-----------------------TCCCGATCCACTAT-TG-AACTC------------TCGAATAATCCAT-----TA-C-TTTTCTCC------------------------CCCTTTACTTCAGAGTGTGTGGCCTCTTAATTTAAAT----------------------ACCTTC--TGTTCTCT--CACAGT-TCATT
droPer2	scaffold_16:1119880-1120049 +		GGCGGAGAACATCAAGAACAGTGTTCACATCGGCTGGACCGCTTCAGATAGTAAGTTATA---T-----------------AC-----------------------TCCCGATCCACTAT-TG-AACTC------------TCGAATAATCCAT-----TA-C-TTTTCTCC------------------------CCCTTTACTTCAGAGTGTGTGGCCTCTTAATTAAAAT----------------------ACCTTC--TGTTCTCT--CACAGT-TCATT
droWil2	scf2_1100000004521:1678494-1678680 -	dwi_1207	AGCTGAAAATATCAAAAATAATGTCCATATAGGCTGGACTTCATCCGATAGTAAGTTTCT---CCCTATAGCAAAAT-----C-----------------------TCTTC------AA-AGA-GAGTTTATGT------A-------------A---ATCAAAT----TCT------------------------CTTTTATTTGCAGAGTGTGTGGCCTCTTAAATGTCTTGAATTTTAAACATTTTGTATCATGCTTTT-TG-----A--ACTTCT-TTTTT
droVir3	scaffold_12723:875686-875813 +		GGCGGAGAACATTAAAAATAATGTTCCCATCGGCTGGACAGCCTCCGATAGTACGTAGCT------------C--------GGACTTTGATATAGTTTAGCCA---TTT-A----------TT-CA--ATATTT------A-------------C---CCA-T-A----------TTCT-----------------TCTCCTTCTACAGAATGTGT---------------------------------------------------------------------
droMoj3	scaffold_6500:10462023-10462180 -		GGCGGAGAACATCAAGAACAATGTGCATATTGGCTGGACAGCGTCAGATAGTAAGCTTCCCTTG-------GA--------CT-----------------------GC----------T-AGT-CT-AC------------ACATATTAT---------TT-T-C---AGTTACTATATAAACCCTTTGCTCTCTTTTTCCATTCACAGAATGTGTCTCTGCCTAGTTTTCG--------------------------------------------------ATG
droGri2	scaffold_15252:4390022-4390161 +		GGCGGAGAACATTAAGAACAATGTGCACATTGGCTGGACAGCGTCTGATAGTAAGTATAA--AA------------------------------------------------AATCGAT-GGA-TA-TC------------TCAAACCAGTCACA---AT----TAT-A------TCAT-----------------AATTATCTTACAGAATGCGTGTCTTATTAAGTGGGAA---T------------------GC----------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GGCGGACAACATCAAGAACAATGTCCACATTGGCTGGACTGCTTCAGATAGTAAGTCACT------------A--------TA-----------------------ATTTTAATAATAAT-TG-CATTTTAATT------A-------------T---TAA-T-T----GAT------------------------TTCCTCTTTTCAGAATGTGTTGCTTCTTAACTGGCTA----------------------TGCTATTTTGT-TTTA--TACAGT-TCATT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...GGACAACATCAAGAACAATGT.....................................................................................................................................................................................................................................................................	21	1	3.00	3	1	0	0	0	2	0
....GACAACATCAAGAACAATGT.....................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	3	0
..........ATCAAGAACAATGTCCACATTGGCTGG........................................................................................................................................................................................................................................................	27	1	2.00	2	1	0	0	0	0	1
........................CCACATTGGCTGGACTGCTTCA...............................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
GGCGGACAACATCAAGAAC..........................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................CACATTGGCTGGACTGCTTCAGAT............................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................CACATTGGCTGGACTGCTTC................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................CCACATTGGCTGGACTGCTT.................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............AGAACAATGTCCACATTGGCTGGAC......................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
GGCGGACAACATCAAGAACAAT.......................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............AGAACAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................AACAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
........................CCACATTGGCTGGACTGCTTCAGAT............................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................CCACATTGGCTGGACTGCTTCAGATAA..........................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................ACAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............CAAGAACAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................CCACATTGGCTGGACTGCT..................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droBip1

GGCGGATAACATCAAGAACAATGTCCACATTGGCTGGACTGCTTCAGACAGTAAGTTAAT------------A--------TA------------------TATTTTTTTAAAAA------GG-AATTAT-TCT------A-------------AATATTA-ATT----TAT------------------------TTCTTCTTTTCAGAATGTGTTGCTTCTTAACTGGCAT----------------------TGCTTTT-TGGTTTTA--TTGAGT-TCATT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGCGGAGAACATCAAGAACAATGTTCACATTGGCTGGACCGCTTCAGATAGTAAGTAGTA---T---------A-ATCTCTGGATTCT------------------------------G-TTT-TACCGTGGTTAATTTC-TTAAA--------------------------------------------------TTATTCATTTCAGAATGCGTAT------AATAT-GAT----------------------GAT-ATGTTGATTTCG--CACAGT-TT-TT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGCCGAGAACATCAAGAACAATGTCCACATTGGCTGGACTGCTTCAGATAGTAAGTTTTG---C-----------------CT-----------------------TTA-AAATGATCT-TGA-AGATATGTAT------T-------------A---ATT-T-C---AATT------------------------AAACTTATTTCAGAATGTGTGTCTTCTTGAATGAAAA----------------------GACCCGGGTGTTCTTA--CACAGT-TCTTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGCGGAGAATATCAAAAACAATGTCCACATTGGCTGGACCACTTCAGATAGTAAGTTTGG------------A--------CT-----------------------GTTTAGATTATTC-TAA-AACTTTGATT------A-------------A---TTC-T-A----TT-------------------------TTTTCAATTTCAGAGTGTGTGTCTTCTTGAATGAAAT----------------------GATTTTTGTGTTTTCA--CACTTT-TCTTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGCGGAGAATATCAAGAACAATGTCCACATTGGCTGGACCACTTCAGATAGTAAGTTTGG------------A--------CT-----------------------TCTTAAAAATTCC-GAA-TA--ATTTTT------A-------------A---ATG-T-T---ATTT------------------------TTTCTTATTTCAGAATGTGTGTC---TTAAGTGAATT----------------------GATTTTCGTGTTTTCA--CACACT-TCTTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCCGAGAACATCAAGAACAATGTCCACATTGGCTGGACTACTTCAGATAGTAAGTTGGC------------A--------GT-----------------------ACCTAAAAAACAA-GAA-AAAGCTGATT------T-------------A---ATA-T-T----GTT------------------------TTCCCCATTTCAGAGTGTGTGTCTTCTTAAT-GGAAT----------------------AATTTCCGCGTTGCCA--CACAGT-TTTTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGCCGAAAACATCAAGAACAATGTCCACATTGGCTGGACCACTTCAGATAGTAAGTTAGA---T-----------------CT-----------------------TCG-GAAATATCC-TGA-AACCCCGGCT------A-------------A---ATA-A-T---TTTG------------------------TTCCTTTTTTCAGAATGCGTGTCTTCTTAATTGAACT----------------------GATTTTTGTGTTCTCA--CACAGTATTTTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGCGGAGAACATCAAGAACAATGTCCACATTGGATGGACCACTTCAGATAGTAAGTTCAA---A-----------------GT-----------------------TCGTCAAAT---AT-GG-CACCCTGGCT------A-------------A---ATC-A-T---CTTG------------------------ATATCTATTTCAGAATGTGTGTCTTCATAAAT-----------------------------------------TA--CACAGT-GATTT	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGCGGAGAACATTAAGAACAATGTCCACATTGGCTGGACTACTTCAAATAGTAAGTTTTC------------AC-------CT-----------------------TCTTCAAATTGAA-GGATAACTGTGTCT------A-------------A---ATG-T-G----TGT------------------------TTTCTTATTTCAGAATGCGTCTCATCATAATTCAAAT----------------------GATTTTAGTGTTCTCACACACAGT-TCATT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................CCACATTGGCTGGACTAC...................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CCACATTGGCTGGACTACTTC................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CACATTGGCTGGACTACT..................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCGTCTCATCATAATTCAAA.....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CCACATTGGCTGGACTACTT.................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AATGCGTCTCATCATAATTCAAAT----------------------GATT..........................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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........................CCACATTGGCTGGACTACT..................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ACATTGGCTGGACTACTTC................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AATTCAAAT----------------------GATTTTAGT.....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TAAGAACAATGTCCACATTGGCT..........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTTAGTGTTCTCACACACAGT-TC...	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GTCT------A-------------A---ATG-T-G----TGT------------------------TTTCTTATTTCA.............................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGCGGAGAACATCAAGAACAATGTCCACATTGGCTGGACTACTTCAAATAGTAAGTTGCC------------GC-------GT-----------------------TCTTGAAATTTAA-GGA-TATCATGTCT------A-------------A---ATG-T-G----TGT------------------------TTTCTAATTTCAGAATGCGTGTCATCATAATTCAAAT----------------------GATTTTAGTGTTCCTA--CACAGT-TCATT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.GCGGAGAACATCAAGAACAAT.......................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GAACAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AATGTCCACATTGGCTGGAC......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......GAACATCAAGAACAATGTC....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...GGAGAACATCAAGAACAAT.......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CATCAAGAACAATGTCCACATTGGCTG.........................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AATTCAAAT----------------------GATTTTAGTGTTCCTA--C...........	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TGCGTGTCATCATAATTCA.......................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGCGGAGAACATCAAGAACAATGTCCACATCGGCTGGACTACTTCAAATAGTAAGTTGCC------------GA-------GT-----------------------TCTTGAAATTGAA-GGA-TGTCATGTCT------A-------------A---ATG-T-G----AGT------------------------TTTTTAATTTCAGAATGCGTGTCATCATAAATCAAAT----------------------GATTTTAGTGTTTTTA--CACAGT-TCATT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................CCACATCGGCTGGACTACTTCAA..............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..........ATCAAGAACAATGTCCACATCGGCTGGA.......................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0
.................ACAATGTCCACATCGGCTGGA.......................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..........ATCAAGAACAATGTCCACATCGGCT..........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
........................CCACATCGGCTGGACTACTTC................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..............AGAACAATGTCCACATCGGCTGGACTA....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................................ATGCGTGTCATCATAAATCAAAT----------------------GATT..........................	27	1	1.00	1	0	1	0	0
.............AAGAACAATGTCCACATCGGCTGGA.......................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
........................CCACATCGGCTGGACTACTTCAAATA...........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.........................CACATCGGCTGGACTACTT.................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0

droYak3

GGCGGAGAACATCAAGAACAATGTCCACATTGGCTGGACCACTTCAAATAGTAAGTCGTA---G-------CAC-------GG-----------------------TCATGGAAAGTAA-GGA-TCACATGTCT------A-------------A---ATG-C-G----TGT------------------------TTTCTAATTTCAGAATGCGTCTCTTCATAAATCACAT----------------------GATTTTAGTGTTCTCA--CACAGT-TGATT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
GGCGGAGAACATCAAGAACAATGT.....................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................AATGCGTCTCTTCATAAATCACAT----------------------GAT...........................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................................AATCACAT----------------------GATTTTAGTGTT..................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................CACATTGGCTGGACCACTTCAA..............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CACAT----------------------GATTTTAGTGTTCTCA--CACAGT-.....	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
GGCGGAGAACATCAAGAACA.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................CGTA---G-------CAC-------GG-----------------------TCATGGAAAGTAA-GGA-TCA..............................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......AACATCAAGAACAATGTCCACATTGGC...........................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AATGCGTCTCTTCATAAATCACAT----------------------G.............................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CAATGTCCACATTGGCTGGACCACTT.................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......GAACATCAAGAACAATGTCCA..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................ACAATGTCCACATTGGCTGGACCACTT.................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................ACAT----------------------GATTTTAGTGTTCTCA--CACA........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................AATGTCCACATTGGCTGGACCACTTC................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
GGCGGAGAACATCAAGAACAATGTCC...................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AATTTCAGAATGCGTCTCTT................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................CACATTGGCTGGACCACTT.................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GTGTTCTCA--CACAGT-TGATT	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........CATCAAGAACAATGTCCACAT...............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CACAT----------------------GATTTTAGTGTTCT................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................CAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............GAACAATGTCCACATTGGCTGGAC......................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................GTCCACATTGGCTGGACCACT..................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............AGAACAATGTCCACATTGGCTGG........................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....GAGAACATCAAGAACAATGT.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TTCAGAATGCGTCTCTTCATAAAT.........................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............GAACAATGTCCACATTGGCTGGACCAC...................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................ATGTCCACATTGGCTGGACCACT..................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AATGCGTCTCTTCATAAAT.........................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................ACATTGGCTGGACCACTTCAA..............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................CCACATTGGCTGGACCACTTCAA..............................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GGCGGAGAACATCAAGAACAATGTCCACATTGGCTGGACTACTTCAGATAGTAAGTTTGC------------AC-------GT-----------------------TCATGGAAAATAA-GGA-TATCATGTCT------A-------------A---GTG-G-C----TG-------------------------TTTCTAATTTCAGAATGCGTGTCTTCATAATTCAAAT----------------------GATTTTAGTGTTCTCA--CACACT-TCATT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................................ATAATTCAAAT----------------------GATTTTAGT.....................	20	1	3.00	3	0	0	0	0	1	2	0
...GGAGAACATCAAGAACAATGT.....................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	1	0	0
............CAAGAACAATGTCCACATTGGCT..........................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...........................CATTGGCTGGACTACTTCAGATA...........................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.........................CACATTGGCTGGACTACTTCAG..............................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..........................ACATTGGCTGGACTACTTCAGA.............................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........................CACATTGGCTGGACTACTTCAGATAA..........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................GTCTTCATAATTCAAAT----------------------G.............................	18	1	1.00	1	0	0	0	0	0	1	0
...............GAACAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.......AACATCAAGAACAATGTCCACATTGGCT..........................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................GATTTTAGTGTTCTCA--CACACT-TC...	24	1	1.00	1	1	0	0	0	0	0	0
.............AAGAACAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.........................CACATTGGCTGGACTACTTCAGATAAAT........................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................ATGCGTGTCTTCATAATTCAAAT----------------------G.............................	24	1	1.00	1	0	0	0	0	1	0	0
..................CAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...GGAGAACATCAAGAACAATGTC....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...........TCAAGAACAATGTCCACATTGG............................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................AATGCGTGTCTTCATAATTCAAAT----------------------..............................	24	1	1.00	1	0	0	0	0	1	0	0
........................CCACATTGGCTGGACTACTTCAGAT............................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................GTGTCTTCATAATTCAAAT----------------------G.............................	20	1	1.00	1	0	0	0	0	0	1	0
......GAACATCAAGAACAATGTC....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.........................CACATTGGCTGGACTACTT.................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....GAGAACATCAAGAACAAT.......................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...............GAACAATGTCCACATTGGCTG.........................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...........TCAAGAACAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
......................GTCCACATTGGCTGGACTACTTCAGAT............................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..........ATCAAGAACAATGTCCACATTGGCTGGA.......................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................AATTCAAAT----------------------GATTTTAGT.....................	18	2	1.00	2	0	0	0	0	0	2	0
.....AGAACATCAAGAACAATGT.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0

dp5

GGCGGAGAACATCAAGAACAGTGTTCACATCGGCTGGACCGCTTCAGATAGTAAGTTATA---T-----------------AC-----------------------TCCCGATCCACTAT-TG-AACTC------------TCGAATAATCCAT-----TA-C-TTTTCTCC------------------------CCCTTTACTTCAGAGTGTGTGGCCTCTTAATTTAAAT----------------------ACCTTC--TGTTCTCT--CACAGT-TCATT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................TCACATCGGCTGGACCGCTTCA...............................................................................................................................................................................................................................................	22	4	0.75	3	0	3	0	0	0	0	0	0	0	0
.........CATCAAGAACAGTGTTCACATCGGCTG.........................................................................................................................................................................................................................................................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CCTTC--TGTTCTCT--CACAGT-T....	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AAT----------------------ACCTTC--TGTTCTCT--CACAGT-T....	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................ATAATCCAT-----TA-C-TTTTCTCC------------------------C........................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TAAAT----------------------ACCTTC--TGTTCTCT--CACAGT-TCAT.	29	3	0.33	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................TTTTCTCC------------------------CCCTTTACTTCAG............................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AT----------------------ACCTTC--TGTTCTCT--CACA........	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............GAACAGTGTTCACATCGGCTG.........................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........CATCAAGAACAGTGTTCACATCGGCT..........................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...............GAACAGTGTTCACATCGGCTGGAC......................................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................AGTGTTCACATCGGCTGGACC.....................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......GAACATCAAGAACAGTGTTCACATCGGCT..........................................................................................................................................................................................................................................................	29	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............AAGAACAGTGTTCACATCGGCTGGACC.....................................................................................................................................................................................................................................................	27	5	0.20	1	0	0	0	0	1	0	0	0	0	0
.........................CACATCGGCTGGACCGCTTC................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......GAACATCAAGAACAGTGTTCACATC..............................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
........ACATCAAGAACAGTGTTCACATCGGCTG.........................................................................................................................................................................................................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......AACATCAAGAACAGTGTTCAC.................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.GCGGAGAACATCAAGAAC..........................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	1

droPer2

GGCGGAGAACATCAAGAACAGTGTTCACATCGGCTGGACCGCTTCAGATAGTAAGTTATA---T-----------------AC-----------------------TCCCGATCCACTAT-TG-AACTC------------TCGAATAATCCAT-----TA-C-TTTTCTCC------------------------CCCTTTACTTCAGAGTGTGTGGCCTCTTAATTAAAAT----------------------ACCTTC--TGTTCTCT--CACAGT-TCATT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..CGGAGAACATCAAGAACAGT.......................................................................................................................................................................................................................................................................	20	3	0.67	2	2	0	0	0	0	0
...GGAGAACATCAAGAACAGT.......................................................................................................................................................................................................................................................................	19	3	0.67	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................AAAAT----------------------ACCTTC--TGTTCTCT--CA..........	21	2	0.50	1	0	0	1	0	0	0
...................AGTGTTCACATCGGCTGGG.......................................................................................................................................................................................................................................................	19	4	0.50	2	2	0	0	0	0	0
.................................................................................................................................................................................................................AGTGTGTGGCCTCTTAATT.........................................................	19	2	0.50	1	0	1	0	0	0	0
.........................CACATCGGCTGGACCGCTTCAG..............................................................................................................................................................................................................................................	22	4	0.50	2	0	2	0	0	0	0
............CAAGAACAGTGTTCACATCGGCG..........................................................................................................................................................................................................................................................	23	3	0.33	1	1	0	0	0	0	0
......GAACATCAAGAACAGTGTT....................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0	0	0
...GGAGAACATCAAGAACAGTGT.....................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	1
..............................CGGCTGGACCGCTTCAGATAAGT........................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0
...............................GGCTGGACCGCTTCAGATAA..........................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0
...................AGTGTTCACATCGGCTGGA.......................................................................................................................................................................................................................................................	19	4	0.25	1	1	0	0	0	0	0
......................GTTCACATCGGCTGGACCGCTTCAG..............................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0

droWil2

AGCTGAAAATATCAAAAATAATGTCCATATAGGCTGGACTTCATCCGATAGTAAGTTTCT---CCCTATAGCAAAAT-----C-----------------------TCTTC------AA-AGA-GAGTTTATGT------A-------------A---ATCAAAT----TCT------------------------CTTTTATTTGCAGAGTGTGTGGCCTCTTAAATGTCTTGAATTTTAAACATTTTGTATCATGCTTTT-TG-----A--ACTTCT-TTTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................................................................................GTCTTGAATTTTAAACAT.......................................	18	1	2.00	2	2	0	0	0	0
..................................................................................................................................................................................................................................ATGTCTTGAATTTTAAAC.........................................	18	1	2.00	2	2	0	0	0	0
.............................................................................................................................................................................................................................................................CATGCTTTT-TG-----A--ACTTCT-.....	18	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................ATTTTGTATCATGCTTTT-TG-----A--A...........	22	1	1.00	1	0	0	0	1	0
.................ATAATGTCCATATAGGCT..........................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................TTTGTATCATGCTTTT-TG-----...............	18	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................TTTGTATCATGCTTTT-TG-----A--ACTTCT-.....	25	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................TTTTAAACATTTTGTATCATGCT..........................	23	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................GTCTTGAATTTTAAACATTTT....................................	21	1	1.00	1	1	0	0	0	0
.................ATAATGTCCATATAGGCTGGAC......................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................TTGTATCATGCTTTT-TG-----A--A...........	19	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................GTGTGTGGCCTCTTAAATGTC......................................................	21	1	1.00	1	0	0	0	1	0
...............AAATAATGTCCATATAGGCTG.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.................ATAATGTCCATATAGGCTGGA.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........ATCAAAAATAATGTCCATATAGGCTGGA.......................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0

droVir3

GGCGGAGAACATTAAAAATAATGTTCCCATCGGCTGGACAGCCTCCGATAGTACGTAGCT------------C--------GGACTTTGATATAGTTTAGCCA---TTT-A----------TT-CA--ATATTT------A-------------C---CCA-T-A----------TTCT-----------------TCTCCTTCTACAGAATGTGT---------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........ATTAAAAATAATGTTCCCATCGGC...........................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AAAAATAATGTTCCCATCGGCTG.........................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TTAAAAATAATGTTCCCATCGGC...........................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATTAAAAATAATGTTCCCATCGGCTGG........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AATGTTCCCATCGGCTGGA.......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TCCCATCGGCTGGACAGCCTCC...............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCGGAGAACATTAAAAATAATGT.....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AAAAATAATGTTCCCATCGGC...........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................ATGTTCCCATCGGCTGGACAGCCTCC...............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTTCCCATCGGCTGGACAGC...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AAAAATAATGTTCCCATCGGCT..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATAATGTTCCCATCGGCTG.........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AATGTTCCCATCGGCTGG........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................ATAATGTTCCCATCGGCT..........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AAAAATAATGTTCCCATCGG............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AAAATAATGTTCCCATCGGCTGGA.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AATGTTCCCATCGGCTGGACAGCCTCCG..............................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTTCCCATCGGCTGGACAGCCTC................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TCCCATCGGCTGGACAGCCTCCG..............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATTAAAAATAATGTTCCCATCGGCTG.........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TAAAAATAATGTTCCCATCGGCT..........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TAATGTTCCCATCGGCTGGACA.....................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATTAAAAATAATGTTCCCATCGGCT..........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATGTTCCCATCGGCTGGACAGC...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................CCCATCGGCTGGACAGCCTC................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TAAAAATAATGTTCCCATCGGC...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATTAAAAATAATGTTCCCATC..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATGTTCCCATCGGCTGGACAGCCTCCG..............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTTCCCATCGGCTGGACAGCCTCCG..............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TAAAAATAATGTTCCCATCGGCTG.........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TTAAAAATAATGTTCCCATCGGCT..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GTTCCCATCGGCTGGACAGCCTCCGAT............................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTCCCATCGGCTGGACAGCCTC................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GCTGGACAGCCTCCGATAACT........................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGCGGAGAACATCAAGAACAATGTGCATATTGGCTGGACAGCGTCAGATAGTAAGCTTCCCTTG-------GA--------CT-----------------------GC----------T-AGT-CT-AC------------ACATATTAT---------TT-T-C---AGTTACTATATAAACCCTTTGCTCTCTTTTTCCATTCACAGAATGTGTCTCTGCCTAGTTTTCG--------------------------------------------------ATG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............AAGAACAATGTGCATATTGGCT..........................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
..........................ATATTGGCTGGACAGCGTCAG..............................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
..........ATCAAGAACAATGTGCATATTGGCTGGA.......................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............GAACAATGTGCATATTGGCTG.........................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................ACAATGTGCATATTGGCTGGACAGCGTC................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...................AATGTGCATATTGGCTGGAC......................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................ATATTGGCTGGACAGCGTCA...............................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................AATGTGCATATTGGCTGGACAGCGTC................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.................ACAATGTGCATATTGGCTG.........................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................GCATATTGGCTGGACAGCGTCAGAT............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.....................TGTGCATATTGGCTGGACAGCGTC................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................ACAATGTGCATATTGGCTGGACAGC...................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................CAATGTGCATATTGGCTGGACAGC...................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................CAATGTGCATATTGGCTGGACAGCGTC................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
....................ATGTGCATATTGGCTGGACAGC...................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............CAAGAACAATGTGCATATTGGCTGG........................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................TGCATATTGGCTGGACAGCGTCAG..............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................AACAATGTGCATATTGGCTGGAC......................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
GGCGGAGAACATCAAGAAC..........................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................AATGTGCATATTGGCTGGA.......................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............CAAGAACAATGTGCATATTGGCTGGAC......................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................GCATATTGGCTGGACAGCGTCAG..............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
......GAACATCAAGAACAATGTGCATATTGGC...........................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
......................GTGCATATTGGCTGGACAGCGTC................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droGri2

GGCGGAGAACATTAAGAACAATGTGCACATTGGCTGGACAGCGTCTGATAGTAAGTATAA--AA------------------------------------------------AATCGAT-GGA-TA-TC------------TCAAACCAGTCACA---AT----TAT-A------TCAT-----------------AATTATCTTACAGAATGCGTGTCTTATTAAGTGGGAA---T------------------GC----------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................ATGTGCACATTGGCTGGACAGCGTCT...............................................................................................................................................................................................................................................	26	2	1.00	2	0	2
.....................................................................................................................................................................................................................CGTGTCTTATTAAGTGGGA.....................................................	19	2	0.50	1	0	1

dan_666

scaffold_12916:11870107-11870168 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads