dan_665

exon [dana_GLEANR_16364:1]; CDS [Dana\GF15599-cds]; CDS [Dana\GF15599-cds]; exon [dana_GLEANR_16364:2]; intron [Dana\GF15599-in]

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCTTGTGTCCTCATGGGTCTCTGGCCGCCTGGGTCCCGGCAACCAATGCGGTAAACTGGGTGTTGGGTGGTGGTCTGGTGGGCATCATCATGGCCAACCTTCTGTGGGATGTGTTTCTTCGGAGGAGTCACCTTGTGGTCATTGGTTTAGTGATCTTTGTAAGTAATTTTCATGGCTTTTAGTGGATATTTTGTATGTAACTTACTCTTTCTTGCAGGCTTTCCTCTGCTACACCTAGCTGTCGTCGCATCCCTTGGTCCGGCCATT ************************************************....((.(((((........((((((((((.....))))).)))))((((((((.((((.....)))).)))))).))))))).))((((((((...))))))))...(((((((((.(((((........))))).))).........))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	V106 head	M058 embryo	V105 male body	V039 embryo
................................................................................................................................................................................................................CTCTTGCAGGCTTCTCTCTGC......................................	21	3	5	0.20	1	1	0	0	0	0
........................................................TGGGTGTTGGGTGGTGGTC................................................................................................................................................................................................	19	0	5	0.20	1	0	1	0	0	0
.......................................................CTAGGTGTTGGGTGGTGTT.................................................................................................................................................................................................	19	2	5	0.20	1	0	0	0	1	0
....GTCACCTCATGGGTCGCTGGC..................................................................................................................................................................................................................................................	21	3	6	0.17	1	0	0	1	0	0
................................................................................GGCAAGATCACGGCCAACCT.......................................................................................................................................................................	20	3	9	0.11	1	0	0	1	0	0
...................................................................TGGGGGTCTGGTGGGCGT......................................................................................................................................................................................	18	2	10	0.10	1	1	0	0	0	0
........................................................TGGGTGTTGGGTGGTGGGC................................................................................................................................................................................................	19	1	14	0.07	1	0	1	0	0	0
.............................................................GTAGGGTGGTGGTCTAGTA...........................................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	1
.......................................................CTGGGTGTCGGGTTGTGG..................................................................................................................................................................................................	18	2	16	0.06	1	1	0	0	0	0
.......................................................CTGGGTGGTGGGTGGTGGT.................................................................................................................................................................................................	19	1	20	0.05	1	0	1	0	0	0
.....................................................................................GATCAAGGCCAACCTTGTG...................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0

CGAACACAGGAGTACCCAGAGACCGGCGGACCCAGGGCCGTTGGTTACGCCATTTGACCCACAACCCACCACCAGACCACCCGTAGTAGTACCGGTTGGAAGACACCCTACACAAAGAAGCCTCCTCAGTGGAACACCAGTAACCAAATCACTAGAAACATTCATTAAAAGTACCGAAAATCACCTATAAAACATACATTGAATGAGAAAGAACGTCCGAAAGGAGACGATGTGGATCGACAGCAGCGTAGGGAACCAGGCCGGTAA ************************************************....((.(((((........((((((((((.....))))).)))))((((((((.((((.....)))).)))))).))))))).))((((((((...))))))))...(((((((((.(((((........))))).))).........))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	M058 embryo	V105 male body	V106 head	M044 female body	V039 embryo
...............................CCAGGGTTCTTGGTTACGCC........................................................................................................................................................................................................................	20	3	3	0.33	1	1	0	0	0	0	0
...............................................................................................................................AGTGGAACACCACAAACCAAC.......................................................................................................................	21	3	3	0.33	1	0	1	0	0	0	0
........................................................................................................................................................TAGAAACATTCAGCAACAGTA..............................................................................................	21	3	4	0.25	1	0	0	1	0	0	0
..........................................................CCGGAATCCACCACCAGACC.............................................................................................................................................................................................	20	3	8	0.13	1	0	0	0	1	0	0
................................................................................CTGTAGTTGTAGCGGTTGGA.......................................................................................................................................................................	20	3	20	0.05	1	1	0	0	0	0	0
...................................................................................TAATAGTACAGGTTGGAAT.....................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0
.................................................CGATTTGACCCGGAACCCA.......................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0
....................................GCCGTTAGTTACGTCTTTTG...................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_12916:11451709-11451975 +	dan_665	GCTTGTGTCCTCATGGGTCT-------------------------------------CTGGCCGCCTGGGTCCCGGC-AACCAATGCGGTAAACTGGGT--------GTTGGGTGGTGGTCTGGTGGGCATCATCATGGCCAACCTTCTGTGGGATGTGTTT--------------------------------------CTTCGGAGGAGTCACCTTGTGGTCATTGGTTTAGTGATCTTTGTAAGTAATTT------------TC-----------------------------ATGG----------CTTTTA-------------------------GTGGA------------TATT----TTG-TATGTAAC---TTACTCTTTCTTGCAGGCTTTCCTCTGCTACACCTAGCTGTCGTCGCATCCCTTGGTCCGGCCATT
droBip1	scf7180000396728:735225-735560 +		ACTCGTGTCCTCATGGGCCTGGGTGAAGGTACCACCTTCCCCGCCCTCAGTGTCCTTCTGGCCGCCTGGGTGCCGGCCAACGAGCGCGGTAAACTCGGCGCTTTGGTGCTGGGTGGTGGCCAGGTGGGCACCATCATGGGTAACCTGCTGTCCGGTGTGCTGATTGATGCC---TACAGCTGGCACTTTGTGTTCTACTTCTTCGGAGG-----CCTTGGAGTCGTCTGGTTCGTGATCTTCGTAAGTATTTT------------TC-----------------------------AAGG----------CATTTA-------------------------GG-GA------------TAC------CG-GGCGTA-----ACACCTTATCTTGCAGGCCTTCCTGTGCTACAGTGAGCCCACGACCCATCCCTTCATCAAACCA--
droKik1	scf7180000302679:727634-727993 +		ACTCGAGTTCTGATGGGTCTCGGGGAGGGCACCACCTTCCCTGCTTTGAGTGTACTCCTGGCGGCCTGGGTGCCGGCAAACGAGCGTGGCAAGCTTGGTGCTCTAGTGCTGGGCGGCGGTCAGGTGGGCACCATTATGGGCAACCTGCTGTCGGGAGTGTTCCTCGATGCC---TACGACTGGCCATTTGTGTTCTACTTCTTTGGCGG-----CCTTGGTGTCATCTGGTTTGCAATCTTTGTAAGTATTCCTTCGA----TTTTCGTAGATCTTGATTTTAGATTTCTAATATCA--------------AAT------------------------------------------------------T-AATTAACA---TTATGCTCTCCCTTAGGTCTTCCTGTGCTACAGTGACCCCGTTTCGCATCCGTTTATTAAGCC---
droFic1	scf7180000453936:137881-138227 -		ACGCGAGTGCTGATGGGTCTGGGCGAGGGCACCACCTTCCCCGCCTTGAGTGTCCTGCTGGCCGCCTGGGTTCCAGCCAATGAGCGTGGAAAGCTCGGTGCCTTGGTGCTGGGCGGAGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCTGGAGTGTTTATCGATGCG---TACGGCTGGGAGTTTGTCTTCTACTTCTTCGGCGG-----TCTGGGTGTTATTTGGTTCGTCATCTTTGTAAGTAACCT------------TC-----------------------------ACT----------------------------------CTTATTTAGTTAAAGATACAGAGATG-C------TA-AATAAA------AATATATTTTTATAGGTCTTCCTGTGCTACAGCGACCCCTCTACGCATCCGTTCATCAAGCC---
droEle1	scf7180000491028:3133370-3133715 -		ACCCGTGTTCTGATGGGTCTGGGCGAGGGAACCACTTTTCCCGCTCTGAGTGTCCTGCTGGCTGCCTGGGTGCCGGCCAACGAACGTGGAAAGCTTGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCGGGAGTGTTTATCGACGCC---TACGGCTGGGAGTTTGTGTTCTACTTCTTTGGCGG-----TCTGGGTTGTATCTGGTTTGCCATCTTTGTGAGTATAGTT---TCACACT-------------------------------------------T--TCAATGG--C------------------------------------ATGAATATTATTAA-ATGCAAT---GTATCCTCTTTTGTAGGTCTTCCTCTGCTACAGCGATCCCGTTTCGCATCCCTTCATCAAGCC---
droRho1	scf7180000761302:106512-106849 -		ACCCGTGTTCTGATGGGTCTGGGCGAGGGTACCACCTTCCCCGCCCTGAGTGTCCTGCTGGCTGCCTGGGTTCCGGCCAACGAACGTGGAAAGCTTGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACCATCATGGGAAACCTTTTGTCGGGAGTACTTATTGACGCCGTGGACGACTATTCAATTGTGTTCTACTTCTTCGGCGG-----CCTTGGTCTTATCTGGTTTGCCATCTTTGTAAGTTTGGCT----TGCACT-------------------------------------------G--CCAACGG--A------------------------------------ATAAATATCAGTTC-ATGCAACATGAAATCCCCTTTTGTAGGTCTTTCTCTGCTACAGCGACCCCACTTCGCATC----------------
droBia1	scf7180000302422:985422-985777 -		ACCCGAGTGCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCCTTGAGTGTCCTGCTGGCTGCCTGGGTTCCGGCCAACGAACGAGGGAAGCTGGGTGCTCTGGTGCTGGGTGGCGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCGGGGGTGTTTATCGATGCC---TACGGCTGGGAGTTTGTTTTCTACTTCTTCGGCGG-----CCTGGGATGCATCTGGTTTGCCATTTTTGTAAGTGCCACATAGA-----------------------------------------TAAGCGCTC--CCTCTGGGGAACAGGTGATAGAT---------------------------------CACT-GAGCCAA---CCATTCTCTTTTGTAGGTCTTCCTCTGCTACAGCGACCCCACCTCGCATCCCTTCATCAAGCC---
droTak1	scf7180000415863:199286-199634 -		ACCCGAGTTCTGATGGGTCTGGGCGAGGGCACCACCTTCCCTGCCTTGAGTGTCCTGCTGGCTGCCTGGGTGCCGGCCAACGAACGTGGAAAGCTGGGTGCTCTGGTGCTGGGCGGTGGTCAAGTGGGTACCATCATGGGCAACCTGTTGTCGGGAGTGTTTATTGATGCC---TACGGCTGGGAGTTTGTCTTCTACTTCTTCGGCGG-----TCTGGGTTGCATCTGGTTTGCCATCTTTGTAAGTACAGTT---TTGCACT-------------------------------------------C--CTTATAG-------------------------AG------------ATGAATCTTAGTTA-ATTCTATTT-CTATTCTATTTTATAGGTCTTCCTGTGCTACAGCGACCCCACTTCGCATCCCTTCATCAAGCC---
droEug1	scf7180000409122:422513-422858 +		ACTCGAGTTTTGATGGGTCTGGGCGAGGGAACTACTTTCCCTGCTTTGAGTGTCCTACTGGCTGCTTGGGTACCGGCTAACGAACGTGGAAAGCTTGGAGCTCTGGTGCTGGGTGGCGGTCAAGTGGGTACCATCATGGGTAACCTGTTGTCGGGAGTATTTATTGATGCC---TACGGCTGGGAGTTCGTGTTCTACTTCTTTGGCGG-----CCTGGGTGTAGTCTGGTTTGCCATCTTTGTAAGTCTAGAT---TTGCACC-------------------------------------------TTC--T-----GTATAAGTACAAGTT---------------------------------TTTA-ATGCTCT---TAATACTCTTTTTTAGGTCTTCCTCTGCTACAGCGATCCCACTTCCCATCCCTTCATCAAGCC---
dm3	chr2L:12032344-12032692 +		ACCCGAGTTCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCTTTGAGTGTCCTCCTAGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGCGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTTATAGACGCC---TATGGTTGGGAGTTTGTCTTCTACTTCTTCGGGGG-----TCTGGGTGTTGTCTGGTTTGCCATCTTTGTAAGTATAGGCT--GAGCACT-------------------------------------------TAG-------CA------------------CATAGTCAA------------GACTCGT-TAT-AATCCAAA---CTATTCTTGCTCGTAGATGTTCCTCTGCTACAGCGATCCCACGTCGCATCCCTTCATCAAGCC---
droSim2	2l:11700095-11700442 +		ACACGAGTTCTGATGGGTCTGGGCGAGGGAACCACTTTCCCCGCTTTGAGTGTCCTGCTAGCTGCTTGGGTACCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTTATAGATGCC---TATGGCTGGGAGTTTGTCTTCTACTTCTTCGGCGG-----TCTGGGTGTTGTCTGGTTTGCCATCTTTGTAAGTATAGCT---GAGCACT-------------------------------------------TAG-------CG------------------CGTAGTCAA------------GACTCGT-TAT-AATCCAAA---CTATTCTTGCTCGTAGGTCTTCCTCTGCTACAGCGATCCCACGTCGCATCCCTTCATCAAGCC---
droSec2	scaffold_16:227481-227828 +		ACCCGAGTTCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCTTTGAGTGTCCTGCTAGCTGCTTGGGTACCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTTATAGACGCC---TATGGCTGGGAGTTTGTCTTCTACTTCTTTGGCGG-----TCTGGGTGTTGTCTGGTTTGCCATCTTTGTAAGTATAGCT---GAGCACT-------------------------------------------TAG-------CG------------------CGTAGTCAA------------GACTCGT-TAT-AATCCAAA---CTATTCTTGCTCGTAGGTCTTCCTCTGCTACAGCGATCCCACGTCGCATCCCTTCATCAAGCC---
droYak3	2L:8452410-8452758 +		ACCCGTGTGCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCTTTGAGTGTCCTGCTGGCTGCTTGGGTGCCGGCCAACGAGCGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCGGGAGTCTTCATAGACGCC---TATGGCTGGGAGTTTGTGTTTTACTTCTTCGGCGG-----CCTGGGCGTTGTCTGGTTTGCCATCTTTGTAAGTATAGCA---AAGCACT-------------------------------------------CCA-------CT--------------CCGCCGTAGTCAA------------TATT----TAT-AATCCAAA---CTATTTTTGCACGTAGATCTTCCTCTGCTACAGCGATCCCACTTCGCATCCCTTCATCAAGCC---
droEre2	scaffold_4929:13381206-13381553 -		ACCCGAGTTCTGATGGGTCTGGGCGAGGGAACCACCTTTCCCGCTTTGAGTGTCCTGCTGGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTGGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACTATCATGGGCAACATGTTGTCGGGAGTCTTTATAGACGCC---TATGGTTGGGAGTTTGTGTTCTACTTCTTCGGCGG-----CCTAGGTGTTGTCTGGTTTGCCATCTTTGTAAGTAAAGCTTAAAAGCACT-------------------------------------------TCC-------C---------------------CACTCAA------------TAATTGT-ACT-AAACCCAA---CTATTGTTGCTCGTAGATCTTCCTCTGCTACAGCGATCCCACTTCGCATCCCTTCATCAAGCC---
dp5	4_group2:923658-923972 -		TCCCGTGTGCTAATGGGTCTGGGGGAGGGCACAACCTTCCCCGCACTCAGTGTGCTCCTCGCTGCTTGGGTCCCCGCAAACGAACGTGGAAAATTGGGTGCTTTGGTCTTGGGTGGCGGACAGGTGGGAACTATCATGGGTAATATGTTATCGGGCGTCTTCCTGGATTCA---TACGATTGGCCATTTGTGTTCTACTTCTTTGGCGG-----CCTGGGTGTCGTTTGGTTCGTCATCTTTGTAAGTATCACT---CA--------------------------------------CCTCAT-----CC--T-----CTACTCTGTCGGGCG---------------------------------CTAA-CAATTTC---CCTTACTTTTCAACAGGTTTTCCTCTGCTACA----------------------------------
droPer2	scaffold_8:2972123-2972437 +		TCCCGTGTGCTAATGGGTCTGGGGGAGGGCACAACCTTCCCCGCACTCAGTGTGCTCCTCGCTGCTTGGGTCCCCGCAAACGAACGTGGAAAATTGGGTGCTTTGGTCTTGGGTGGCGGACAGGTGGGAACTATCATGGGTAATATGTTATCGGGCGTCTTCCTGGATTCA---TACGATTGGCCATTTGTGTTCTACTTCTTTGGCGG-----CCTGGGTGTCGTTTGGTTCGTCATCTTTGTAAGTATCACT---CA--------------------------------------CCTCAT-----CC--T-----CTACTCTGTCGGGCG---------------------------------CTAA-AAATTTC---CCTTACTTTTCAACAGGTTTTCCTCTGCTACA----------------------------------
droWil2	scf2_1100000004585:3998689-3998936 -		ACTCGTGTTTTGATGGGTCTGGGCGAAGGTACCACATTCCCCGCTCTAAGTGTCTTGCTTGCTGCCTGGGTGCCAGCCAATGAACGTGGTAAATTGGGCGCCTTGGTCTTGGGAGGTGGTCAAGTGGGCACTATTATGGGTAATCTGTTATCTGGTGTATTTCTTGATGAA---TATGACTGGCCATTTGTGTTCTACTTCTTTGGCGG-----TCTGGGCGTTATATGGTTCTTGATCTTTGTAAGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACT---
droVir3	scaffold_12963:13909738-13909996 +		ACCCGCGTGCTGATGGGCCTCGGCGAAGGTACCACATTCCCGGCGTTGAGTGTTCTGCTTGCCGCCTGGGTGCCGGCTAATGAACGCGGCAAATTGGGCGCCTTGGTGCTGGGCGGCGGTCAGGTGGGCACCATTATGGGCAATATGCTGTCGGGGGTGTTTCTGGACTCC---TACGATTGGTCATTTGTGTTCTACTTCTTTGGCGG-----TCTTGGCGTTATTTGGTTTGTCATATTTGTAAGTATTTT------------TC-----------------------------CTGG----------TAATTA-------------------------AT--------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6500:5736242-5736511 -		ACGCGTGTCCTGATGGGCCTGGGCGAGGGCACCACATTCCCCGCATTGAGTGTCCTGCTGGCTGCCTGGGTGCCAGCCAACGAGCGTGGTAAACTGGGCGCCTTGGTCCTGGGCGGTGGTCAGGTGGGCACCATTTTGGGCAACCTGCTATCGGGCGTCTTCCTCGACACT---TACGAATGGCCATTTGTCTTCTACTTCTTTGGCGG-----TCTTGGCGTCGTTTGGTTTGTCATCTTCGTAAGTACCCT------------------------------------------------------------------------------------------------------------------------------------CACATTTTTTATGTTTCTATTTTAT-------------------------------------
droGri2	scaffold_15126:5981346-5981676 -		ACCCGTGTGCTGATGGGTTTGGGCGAAGGTACCACATTCCCAGCCTTGAGTGTCCTGCTAGCCGCATGGGTGCCGGCCAACGAACGTGGCAAACTGGGCGCTTTGGTTCTTGGCGGTGGCCAAGTGGGCACCATTATGGGTAATTTACTATCGGGCGTCTTCCTCGAGGCC---TACGACTGGCCATTTGTGTTCTACTTCTTCGGCGG-----TCTTGGCGTTATTTGGTTTGTCATCTTTGTAAGTGAAATA---TTATTT--TC-----------------------------CTAG----------T--TTA-------------------------AT-------------------CAGGTTTA-ATCAGGAGT-CTATCTTATGTTGCAGGTCTTCCTGTGCTTCAGCGATCCCAGCTCGCATC----------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GCTTGTGTCCTCATGGGTCT-------------------------------------CTGGCCGCCTGGGTCCCGGC-AACCAATGCGGTAAACTGGGT--------GTTGGGTGGTGGTCTGGTGGGCATCATCATGGCCAACCTTCTGTGGGATGTGTTT--------------------------------------CTTCGGAGGAGTCACCTTGTGGTCATTGGTTTAGTGATCTTTGTAAGTAATTT------------TC-----------------------------ATGG----------CTTTTA-------------------------GTGGA------------TATT----TTG-TATGTAAC---TTACTCTTTCTTGCAGGCTTTCCTCTGCTACACCTAGCTGTCGTCGCATCCCTTGGTCCGGCCATT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................TGGGT--------GTTGGGTGGTGGTC......................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	1

droBip1

ACTCGTGTCCTCATGGGCCTGGGTGAAGGTACCACCTTCCCCGCCCTCAGTGTCCTTCTGGCCGCCTGGGTGCCGGCCAACGAGCGCGGTAAACTCGGCGCTTTGGTGCTGGGTGGTGGCCAGGTGGGCACCATCATGGGTAACCTGCTGTCCGGTGTGCTGATTGATGCC---TACAGCTGGCACTTTGTGTTCTACTTCTTCGGAGG-----CCTTGGAGTCGTCTGGTTCGTGATCTTCGTAAGTATTTT------------TC-----------------------------AAGG----------CATTTA-------------------------GG-GA------------TAC------CG-GGCGTA-----ACACCTTATCTTGCAGGCCTTCCTGTGCTACAGTGAGCCCACGACCCATCCCTTCATCAAACCA--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTCGAGTTCTGATGGGTCTCGGGGAGGGCACCACCTTCCCTGCTTTGAGTGTACTCCTGGCGGCCTGGGTGCCGGCAAACGAGCGTGGCAAGCTTGGTGCTCTAGTGCTGGGCGGCGGTCAGGTGGGCACCATTATGGGCAACCTGCTGTCGGGAGTGTTCCTCGATGCC---TACGACTGGCCATTTGTGTTCTACTTCTTTGGCGG-----CCTTGGTGTCATCTGGTTTGCAATCTTTGTAAGTATTCCTTCGA----TTTTCGTAGATCTTGATTTTAGATTTCTAATATCA--------------AAT------------------------------------------------------T-AATTAACA---TTATGCTCTCCCTTAGGTCTTCCTGTGCTACAGTGACCCCGTTTCGCATCCGTTTATTAAGCC---	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACGCGAGTGCTGATGGGTCTGGGCGAGGGCACCACCTTCCCCGCCTTGAGTGTCCTGCTGGCCGCCTGGGTTCCAGCCAATGAGCGTGGAAAGCTCGGTGCCTTGGTGCTGGGCGGAGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCTGGAGTGTTTATCGATGCG---TACGGCTGGGAGTTTGTCTTCTACTTCTTCGGCGG-----TCTGGGTGTTATTTGGTTCGTCATCTTTGTAAGTAACCT------------TC-----------------------------ACT----------------------------------CTTATTTAGTTAAAGATACAGAGATG-C------TA-AATAAA------AATATATTTTTATAGGTCTTCCTGTGCTACAGCGACCCCTCTACGCATCCGTTCATCAAGCC---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACCCGTGTTCTGATGGGTCTGGGCGAGGGAACCACTTTTCCCGCTCTGAGTGTCCTGCTGGCTGCCTGGGTGCCGGCCAACGAACGTGGAAAGCTTGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCGGGAGTGTTTATCGACGCC---TACGGCTGGGAGTTTGTGTTCTACTTCTTTGGCGG-----TCTGGGTTGTATCTGGTTTGCCATCTTTGTGAGTATAGTT---TCACACT-------------------------------------------T--TCAATGG--C------------------------------------ATGAATATTATTAA-ATGCAAT---GTATCCTCTTTTGTAGGTCTTCCTCTGCTACAGCGATCCCGTTTCGCATCCCTTCATCAAGCC---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACCCGTGTTCTGATGGGTCTGGGCGAGGGTACCACCTTCCCCGCCCTGAGTGTCCTGCTGGCTGCCTGGGTTCCGGCCAACGAACGTGGAAAGCTTGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACCATCATGGGAAACCTTTTGTCGGGAGTACTTATTGACGCCGTGGACGACTATTCAATTGTGTTCTACTTCTTCGGCGG-----CCTTGGTCTTATCTGGTTTGCCATCTTTGTAAGTTTGGCT----TGCACT-------------------------------------------G--CCAACGG--A------------------------------------ATAAATATCAGTTC-ATGCAACATGAAATCCCCTTTTGTAGGTCTTTCTCTGCTACAGCGACCCCACTTCGCATC----------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACCCGAGTGCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCCTTGAGTGTCCTGCTGGCTGCCTGGGTTCCGGCCAACGAACGAGGGAAGCTGGGTGCTCTGGTGCTGGGTGGCGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCGGGGGTGTTTATCGATGCC---TACGGCTGGGAGTTTGTTTTCTACTTCTTCGGCGG-----CCTGGGATGCATCTGGTTTGCCATTTTTGTAAGTGCCACATAGA-----------------------------------------TAAGCGCTC--CCTCTGGGGAACAGGTGATAGAT---------------------------------CACT-GAGCCAA---CCATTCTCTTTTGTAGGTCTTCCTCTGCTACAGCGACCCCACCTCGCATCCCTTCATCAAGCC---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACCCGAGTTCTGATGGGTCTGGGCGAGGGCACCACCTTCCCTGCCTTGAGTGTCCTGCTGGCTGCCTGGGTGCCGGCCAACGAACGTGGAAAGCTGGGTGCTCTGGTGCTGGGCGGTGGTCAAGTGGGTACCATCATGGGCAACCTGTTGTCGGGAGTGTTTATTGATGCC---TACGGCTGGGAGTTTGTCTTCTACTTCTTCGGCGG-----TCTGGGTTGCATCTGGTTTGCCATCTTTGTAAGTACAGTT---TTGCACT-------------------------------------------C--CTTATAG-------------------------AG------------ATGAATCTTAGTTA-ATTCTATTT-CTATTCTATTTTATAGGTCTTCCTGTGCTACAGCGACCCCACTTCGCATCCCTTCATCAAGCC---	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACTCGAGTTTTGATGGGTCTGGGCGAGGGAACTACTTTCCCTGCTTTGAGTGTCCTACTGGCTGCTTGGGTACCGGCTAACGAACGTGGAAAGCTTGGAGCTCTGGTGCTGGGTGGCGGTCAAGTGGGTACCATCATGGGTAACCTGTTGTCGGGAGTATTTATTGATGCC---TACGGCTGGGAGTTCGTGTTCTACTTCTTTGGCGG-----CCTGGGTGTAGTCTGGTTTGCCATCTTTGTAAGTCTAGAT---TTGCACC-------------------------------------------TTC--T-----GTATAAGTACAAGTT---------------------------------TTTA-ATGCTCT---TAATACTCTTTTTTAGGTCTTCCTCTGCTACAGCGATCCCACTTCCCATCCCTTCATCAAGCC---	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACCCGAGTTCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCTTTGAGTGTCCTCCTAGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGCGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTTATAGACGCC---TATGGTTGGGAGTTTGTCTTCTACTTCTTCGGGGG-----TCTGGGTGTTGTCTGGTTTGCCATCTTTGTAAGTATAGGCT--GAGCACT-------------------------------------------TAG-------CA------------------CATAGTCAA------------GACTCGT-TAT-AATCCAAA---CTATTCTTGCTCGTAGATGTTCCTCTGCTACAGCGATCCCACGTCGCATCCCTTCATCAAGCC---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................GCTCTGGTGCTGGGTGGT..........................................................................................................................................................................................................................................................................................................................................	18	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TGATGGGTCTGGGCGAGGGAACCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GCTTGGGTTCCGGCCAACGAAC..........................................................................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GGTCAAGTGGGTACTATCATGGGC..................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTCTGATGGGTCTGGGCGAGGGAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AACGAACGTGGAAAGCTCGGTGCT.........................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TCGGTGCTCTGGTGCTGGGTGGCGGT.......................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................ATGGTTGGGAGTTTGTCTTC............................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.CCCGAGTTCTGATGGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GCTGCTTGGGTTCCGGCCAA...............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGTCTGGCGTGTTTATAGACGCC---TATGG............................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TGAGTGTCCTCCTAGCTGCTT............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GTGTCCTCCTAGCTGCTTGGGTTCC.....................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TTATAGACGCC---TATGGTTGGGAGT....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CGATCCCACGTCGCATCCCT.............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACACGAGTTCTGATGGGTCTGGGCGAGGGAACCACTTTCCCCGCTTTGAGTGTCCTGCTAGCTGCTTGGGTACCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTTATAGATGCC---TATGGCTGGGAGTTTGTCTTCTACTTCTTCGGCGG-----TCTGGGTGTTGTCTGGTTTGCCATCTTTGTAAGTATAGCT---GAGCACT-------------------------------------------TAG-------CG------------------CGTAGTCAA------------GACTCGT-TAT-AATCCAAA---CTATTCTTGCTCGTAGGTCTTCCTCTGCTACAGCGATCCCACGTCGCATCCCTTCATCAAGCC---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................ACGTGGAAAGCTCGGTGC..........................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGGTGGTCAAGTGGGTACTATCATG.....................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................ATCATGGGCAACCTGTTGTCTGGC...................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GGCCAACGAACGTGGAAAGCTCGGT............................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GTCCTGCTAGCTGCTTGGGTAC......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GGTCAAGTGGGTACTATCATGGGCAAC...............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ATCATGGGCAACCTGTTGTCTGGCGG.................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TGGCGTGTTTATAGA........................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TCCAAA---CTATTCTTGCTCGTAG..................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................TGGGTGTTGTCTGGT........................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................GGCGG-----TCTGGGTGTTGTCTGGT........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CTGGGTGTTGTCTGGTTTGCC...................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GGTCAAGTGGGTACTATCATGGGC..................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TGGAAAGCTCGGTGCTCTGGTGCTG................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................TATCATGGGCAACCTGTTGTCTGGC...................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................GCGTGTTTATAGATGCC---TATGGCTGGG.......................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TGGGTCTGGGCGAGGGAACCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AG-------CG------------------CGTAGTCAA------------GACTCGT-T................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTACTTCTTCGGCGG-----TCTGGGTG.................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCTGCTACAGCGATCCCACGTCGC...................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GGTGCTCTGGTGCTGGGT.............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CGGCCAACGAACGTGGAAAGCTCGGT............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...CGAGTTCTGATGGGTCTGGGCGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TGCTGGGTGGTGGTCA.....................................................................................................................................................................................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ACCCGAGTTCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCTTTGAGTGTCCTGCTAGCTGCTTGGGTACCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTTATAGACGCC---TATGGCTGGGAGTTTGTCTTCTACTTCTTTGGCGG-----TCTGGGTGTTGTCTGGTTTGCCATCTTTGTAAGTATAGCT---GAGCACT-------------------------------------------TAG-------CG------------------CGTAGTCAA------------GACTCGT-TAT-AATCCAAA---CTATTCTTGCTCGTAGGTCTTCCTCTGCTACAGCGATCCCACGTCGCATCCCTTCATCAAGCC---	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........GATGGGTCTGGGCGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	1	2	0
.......................................................................................................................................................................................................TCTTTGGCGG-----TCTGGGTGT................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
..............................................................................AACGAACGTGGAAAGCTCGGTG...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
......................................................CTGCTAGCTGCTTGGGTACCGGC..................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
............................................................................................................................................................GTGTTTATAGACGCC---TATGGCTGGGA......................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.................................................................................GAACGTGGAAAGCTCGGTGCTCT.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................GTAAGTATAGCT---GAGCACT-------------------------------------------TAG-------C.................................................................................................................................	23	1	1.00	1	0	0	1	0
......................................................................................................CTGGTGCTGGGTGGTGGT.......................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
..............................................................................................................................................ACCTGTTGTCTGGCGTGTTTATAGAC.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................TGGGTGTTGTCTGGTTTGC....................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...................................................................................................GCTCTGGTGCTGGGTGGT..........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................CTTCTTTGGCGG-----TCTGGGT..................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
................................................................................................................................................................TTATAGACGCC---TATGGCTGGGA......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................CTACTTCTTTGGCGG-----TCTGGGTGT................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................CTTTGGCGG-----TCTGGGTGTT...............................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..................................................................................................................................................................ATAGACGCC---TATGGCTGGGA......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........CTGATGGGTCTGGGCGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..........TGATGGGTCTGGGCGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.............................................TTGAGTGTCCTGCTAGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...........GATGGGTCTGGGCGAGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..............................................TGAGTGTCCTGCTAGCTGCTTGGGTA.......................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
..............................................................................................................................................................GTTTATAGACGCC---TATGGCTGGGA......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0

droYak3

ACCCGTGTGCTGATGGGTCTGGGCGAGGGAACCACCTTCCCCGCTTTGAGTGTCCTGCTGGCTGCTTGGGTGCCGGCCAACGAGCGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCGGGAGTCTTCATAGACGCC---TATGGCTGGGAGTTTGTGTTTTACTTCTTCGGCGG-----CCTGGGCGTTGTCTGGTTTGCCATCTTTGTAAGTATAGCA---AAGCACT-------------------------------------------CCA-------CT--------------CCGCCGTAGTCAA------------TATT----TAT-AATCCAAA---CTATTTTTGCACGTAGATCTTCCTCTGCTACAGCGATCCCACTTCGCATCCCTTCATCAAGCC---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................CTTCATAGACGCC---TATGGCTGGGA......................................................................................................................................................................................................................................................................	24	1	22.00	22	0	1	0	0	0	2	19	0	0	0	0
......GTGCTGATGGGTCTGGGCGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	0	1	0	0	0	0	6	0	0	0	0
.....................................................................................................................GGTCAAGTGGGTACTATCATGGGC..................................................................................................................................................................................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	7	0	0	0	0
...............................................................................................................................................................................................GTTTTACTTCTTCGGCGG-----CCTGGGC..................................................................................................................................................................................................................................	25	1	6.00	6	2	2	1	0	0	0	1	0	0	0	0
......GTGCTGATGGGTCTGGGCGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	6	0	0	0	0
.................................................................................................................................................................CATAGACGCC---TATGGCTGGGA......................................................................................................................................................................................................................................................................	21	1	6.00	6	0	1	0	0	0	0	5	0	0	0	0
......................................................................................................................GTCAAGTGGGTACTATCATGGGC..................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	2	0	0	0	0	3	0	0	0	0
...........GATGGGTCTGGGCGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
.................................................GTGTCCTGCTGGCTGCTTGGGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	3	0	0	0	1	0	0	0	0
....................................................................................................................................ATCATGGGCAACCTGTTGTCGGGA...................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
.....................................................................................GTGGAAAGCTCGGTGCTCTGGTGCTG................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................GTTTGTGTTTTACTTCTTCGGC................................................................................................................................................................................................................................................	22	1	4.00	4	0	3	1	0	0	0	0	0	0	0	0
......................................................................................................................................CATGGGCAACCTGTTGTCGGGA...................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
................................................................................CGAGCGTGGAAAGCTCGGTGCTCTGGT....................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................CTTCTTCGGCGG-----CCTGGGC..................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.................................................................................................................................ACTATCATGGGCAACCTGTTGTCGGG....................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
................................................................................................................................................................TCATAGACGCC---TATGGCTGGGA......................................................................................................................................................................................................................................................................	22	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
...................................................................................GCGTGGAAAGCTCGGTGCT.........................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
......GTGCTGATGGGTCTGGGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................CGAGCGTGGAAAGCTCGGTGCTCTGGTG...................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................TTTGTGTTTTACTTCTTCGGCGG-----CC.......................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GGTCAAGTGGGTACTATC........................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................AACCTGTTGTCGGGAGTCTTCATAGA........................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.................................................................................GAGCGTGGAAAGCTCGGTGCTCTG......................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................TTCATAGACGCC---TATGGCTGGGA......................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................CATGGGCAACCTGTTGTCGGG....................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
..........................................................................GGCCAACGAGCGTGGAAAGCT................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................................CAAGTGGGTACTATCATGGGC..................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................GGTCAAGTGGGTACTATCATGGG...................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
................................................................................................GGTGCTCTGGTGCTGGGTGGT..........................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................ATAGACGCC---TATGGCTGGGAGTTTGT................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....GTGTGCTGATGGGTCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
......GTGCTGATGGGTCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...................................................................................................................GTGGTCAAGTGGGTACTATCATGGGC..................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................AAGTGGGTACTATCATGGGC..................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................ATCATGGGCAACCTGTTGTCGG.....................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
....GTGTGCTGATGGGTCTGGGCGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................ACTATCATGGGCAACCTGTTGTCGGGAGT.................................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................ATCATGGGCAACCTGTTGTCGGG....................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................GGGCAACCTGTTGTCGGG....................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................TTTTACTTCTTCGGCGG-----CCTGGGC..................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................CTATCATGGGCAACCTGTTGTCGGGA...................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................GTGGTCAAGTGGGTACTATC........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TACTTCTTCGGCGG-----CCTGGGC..................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................ACTATCATGGGCAACCTGTTGTCGGGA...................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................CGGTGCTCTGGTGCTGGGTGGTGGT.......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................GAGCGTGGAAAGCTCGGTGCTCTGGTG...................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GGTGGTCAAGTGGGTACT...........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................GCTCTGGTGCTGGGTGGTGGT.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................CTGGTGCTGGGTGGTGGTCAAGTGGGTA.............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................CAACGAGCGTGGAAAGCTCGGTGC..........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................CTGGGCGTTGTCTGGTTTGCC...................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................GTGCTGGGTGGTGGTCAAGA..................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................CGAGCGTGGAAAGCTCGGTGCTCTG......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................GGGCAACCTGTTGTCGGGAGT.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........TGATGGGTCTGGGCGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................TGGGCAACCTGTTGTCGGGA...................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCACTTCGCATCCCTTC...........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................AACCACCTTCCCCGCTTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTTTACTTCTTCGGCGG-----CCTGAC...................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................TTCCCCGCTTTGAGTGTCCTGCTGGC.................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........GATGGGTCTGGGCGAGGGAACCACCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................GTGTCCTGCTGGCTGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................GGTCAAGTGGGTACTATCATGGGCAACCT.............................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............ATGGGTCTGGGCGAGGGAACCAC............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................AGCTCGGTGCTCTGGTGCTGGGTGGTGGT.......................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................GTTTTACTTCTTCGGCGG-----CCT......................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AGACGCC---TATGGCTGGGAGTTT..................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GTTTTACTTCTTCGGCGG-----C........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................TTCATAGACGCC---TATGGCTGGGAGT....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................TTGTGTTTTACTTCTTCGGC................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................GCTTTGAGTGTCCTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ATCATGGGCAACCTGTTGTCG......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TTCATAGACGCC---TATGGCTGGGAG.....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GTTGTCTGGTTTGCCATCTTT.............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................CTATCATGGGCAACCTGTTGTCGG.....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................CTGGGCGTTGTCTGGTTTGCCA..................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................GCCAACGAGCGTGGAAAGCTC...............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTTACTTCTTCGGCGG-----CCTGGGC..................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................ACTATCATGGGCAACCTGTT..........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................CGTGGAAAGCTCGGTGCT.........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................CAAGTGGGTACTATCATGGG...................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................CTGGTGCTGGGTGGTGGTC......................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................TTGAGTGTCCTGCTGGCTGCTTGGGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTCTGCTACAGCGATCCC..........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................ACCTGTTGTCGGGAGTCTT..............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTCGGCGG-----CCTGGGCGTTGTCT...........................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GTTTTACTTCTTCGGCGG-----CCTGGGCGT................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................CGGTGCTCTGGTGCTGGGTGGTGG........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..CCGTGTGCTGATGGGTCTGGGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ACTTCTTCGGCGG-----CCTGGGCGTT...............................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................CAACGAGCGTGGAAAGCTCGGTGCTCTGGT....................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................CAACGAGCGTGGAAAGCTCGGTG...........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................CTGGTGCTGGGTGGTGGTCAAGTGG................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCACTTCGCATCCCTTCATCAAGC....	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................GGCCAACGAGCGTGGAAAGCTCGG.............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................AACCACCTTCCCCGCTTTGAGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....GTGTGCTGATGGGTCTGGGCGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................GAGCGTGGAAAGCTCGGTGCTCTGGTGCTG................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................GAGCGTGGAAAGCTCGGTGCTCTGGTGC..................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........GCTGATGGGTCTGGGCGAGGGAACCACCT..........................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................GTTTGTGTTTTACTTCTTCGGCGG-----CCT......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................CGCTTTGAGTGTCCTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTACTTCTTCGGCGG-----CCTGGGC..................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................CTGGGTGGTGGTCAAGTGGG...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................TTTACTTCTTCGGCGG-----CCTGGG...................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
ACCCGTGTGCTGATGGGTCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................GGTACTATCATGGGCAACCT.............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................GGTCAAGTGGGTACTATCATGGGT..................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................GGAAAGCTCGGTGCTCTGGTGCTG................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................GCGTGGAAAGCTCGGTGCTCTGGTGCTG................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCACTTCGCATCCCTT............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GGGCGTTGTCTGGTTTGCC...................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............GGTCTGGGCGAGGGAACCACCTTCCCCG....................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TTTGTGTTTTACTTCTTCGGC................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................CATGGGCAACCTGTTGTCGGGAGTC................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................ATAGACGCC---TATGGCTGGGA......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............ATGGGTCTGGGCGAGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................GTTTTACTTCTTCGGCGG-----CCTGG....................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................GGTGGTCAAGTGGGTACTATCATGGGC..................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................AGCTCGGTGCTCTGGTGCTGGG..............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCATAGACGCC---TATGGCTGGGAGTTT..................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCACTTCGCATCCCTT............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................GAACCACCTTCCCCGCTTTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................GTCTGGGCGAGGGAACCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................GG-----CCTGGGCGTTGTCTGGT........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTCTGCTACAGCGATCC...........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....GTGTGCTGATGGGTCTGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................C---TATGGCTGGGAGTTTGTGT..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................TCATGGGCAACCTGTTGTCGGGAGTC................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................ATGGGCAACCTGTTGTCGGG....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GTTTTACTTCTTCGGCGG-----CCTGGG...................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGCGATCCCACTTCGC...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GTTTGTGTTTTACTTCTTCGGCGG-----C........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................CGAGCGTGGAAAGCTCGGTGCTCT.......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................CTGTTGTCGGGAGTCTTCATA..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................GGTGCTGGGTGGTGGTCAAGTGGG...............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................GTACTATCATGGGCAACCTGTT..........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCATCCCTTCATCAAGC....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................GTGGAAAGCTCGGTGCTCTG......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................GTGTTTTACTTCTTCGGCGG-----CC.......................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................GTGGAAAGCTCGGTGCTCTGGTGCTGG...............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................ACTTCTTCGGCGG-----CCTGGGC..................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................C---TATGGCTGGGAGTTTGTGTTTTAC.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................GAACCACCTTCCCCGCTTTGAGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................ATGGGCAACCTGTTGTCGGGA...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCATCCCTTCATCAAGC....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................CTTGGGTGCCGGCCAACGAGCG.........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................TGGAAAGCTCGGTGCTCTGGTGCTGG...............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................TGGGTGGTGGTCAAGTGGG...............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TGGGCGTTGTCTGGTTTGC....................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........CTGATGGGTCTGGGCGAGGGAACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................GGCGTTGTCTGGTTTGCCATCTT..............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTGGGTGCCGGCCAACGAGCGTGGAAA...................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................AGTCTTCATAGACGCC---TATGGCT..........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AGACGCC---TATGGCTGGGAGTTTGT................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................GTACTATCATGGGCAACCTG............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................GGTACTATCATGGGCAACCTGTTGTC.......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGTTTTACTTCTTCGGCGG-----C........................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................CTGGGTGGTGGTCAAGTGG................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................GGCGG-----CCTGGGCGTTGTCTGGTTTGC....................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................AACGAGCGTGGAAAGCTCGGTGCTCTGGT....................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................GCTTTGAGTGTCCTGCTGGC.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................GTGCTCTGGTGCTGGGTGGT..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................TATCATGGGCAACCTGTTGTCGGG....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................GCTCTGGTGCTGGGTGGTGGTC......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................GCGG-----CCTGGGCGTTGTCTG..........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GACGCC---TATGGCTGGGAGTTTGT................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................TCTGGTGCTGGGTGGTGGTC......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................GTCCTGCTGGCTGCTTGGGTGCCGGC..................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................GCTTTGAGTGTCCTGCTGGCT................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........GCTGATGGGTCTGGGCGAGGGAACCACCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................TGAGTGTCCTGCTGGCTGCTTGGG.........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GTGCTGATGGGTCTGGGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........GATGGGTCTGGGCGAGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................GACGCC---TATGGCTGGGAGT....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTTCTTCGGCGG-----CCTGGGCGTTGTCTG..........................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTGGGTGCCGGCCAACGAGCGTGGAA....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGCTACAGCGATCCCACTTCGCATC................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GTTTGTGTTTTACTTCTTCGGCGG-----CC.......................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................GTGGAAAGCTCGGTGCTCT.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................TGGGTGGTGGTCAAGTGGGTACT...........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................TTGAGTGTCCTGCTGGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTTACTTCTTCGGCGG-----CCTGG....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

ACCCGAGTTCTGATGGGTCTGGGCGAGGGAACCACCTTTCCCGCTTTGAGTGTCCTGCTGGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTGGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACTATCATGGGCAACATGTTGTCGGGAGTCTTTATAGACGCC---TATGGTTGGGAGTTTGTGTTCTACTTCTTCGGCGG-----CCTAGGTGTTGTCTGGTTTGCCATCTTTGTAAGTAAAGCTTAAAAGCACT-------------------------------------------TCC-------C---------------------CACTCAA------------TAATTGT-ACT-AAACCCAA---CTATTGTTGCTCGTAGATCTTCCTCTGCTACAGCGATCCCACTTCGCATCCCTTCATCAAGCC---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................TTTCCCGCTTTGAGTGTCCT.......................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	1	1	0
.....................................................................................................................GGTCAAGTGGGCACTATCATGGG...................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	1	1	0
..........................................................................GGCCAACGAACGTGGAAAGCTGG..............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................GTCAAGTGGGCACTATCA.......................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................GTTGTCGGGAGTCTTTATA..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................CTACTTCTTCGGCGG-----CCC......................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
...................................CTTTCCCGCTTTGAGTGTCCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
..CCGAGTTCTGATGGGTCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................TAGGTGTTGTCTGGTTTGCC...................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
....................................................TCCTGCTGGCTGCTTGGGTTCCGGC..................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................AACGTGGAAAGCTGGGTGCT.........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..................................CCTTTCCCGCTTTGAGTGTCCTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCTCTGCTACAGCGATCCCAC........................	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................CTATCATGGGCAACATGTTGTCGGGA...................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.....................................................CCTGCTGGCTGCTTGGGTTCCGG...................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................TGGGTTCCGGCCAACGAACGTGGAAAGC.................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCTCTGCTACAGCGT..............................	19	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................ATGGGCAACATGTTGTCGGGA...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................CTTCTTCGGCGG-----CCTAGGTGTTGTCT...........................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
................................................................................CGAACGTGGAAAGCTGGGTGCT.........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.................................ACCTTTCCCGCTTTGAGTGTCCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................AGTGGGCACTATCATGGGCAAC...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............ATGGGTCTGGGCGAGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
............................GAACCACCTTTCCCGCTTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
......GTTCTGATGGGTCTGGGCGAGGGAACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................GTTTGTGTTCTACTTCTTCGGC................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..............................................................................AACGAACGTGGAAAGCTGGGT............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
............ATGGGTCTGGGCGAGGGAACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....AGTTCTGATGGGTCTGGGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...CGAGTTCTGATGGGTCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................AAGTGGGCACTATCATGGGC..................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................CTGGTGCTGGGTGGTGGTC......................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................GCTGGGTGGTGGTCAAGTGGCA..............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................TTATAGACGCC---TATGGTTGGGA......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................CAAGTGGGCACTATCATGGGCA.................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................ATCATGGGCAACATGTTGTCGGG....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................GTCAAGTGGGCACTATCATG.....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..............................................................................AACGAACGTGGAAAGCTGGGTGCT.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................GTTCTACTTCTTCGGCGG-----CC.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................CTATCATGGGCAACATGTTGTCGGG....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................CAAGTGGGCACTATCATGGGC..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................CTTTATAGACGCC---TATGGTTGG........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.................................................................................GAACGTGGAAAGCTGGGTGCT.........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.................................ACCTTTCCCGCTTTGAGTGTCCTGCTGGC.................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0

dp5

TCCCGTGTGCTAATGGGTCTGGGGGAGGGCACAACCTTCCCCGCACTCAGTGTGCTCCTCGCTGCTTGGGTCCCCGCAAACGAACGTGGAAAATTGGGTGCTTTGGTCTTGGGTGGCGGACAGGTGGGAACTATCATGGGTAATATGTTATCGGGCGTCTTCCTGGATTCA---TACGATTGGCCATTTGTGTTCTACTTCTTTGGCGG-----CCTGGGTGTCGTTTGGTTCGTCATCTTTGTAAGTATCACT---CA--------------------------------------CCTCAT-----CC--T-----CTACTCTGTCGGGCG---------------------------------CTAA-CAATTTC---CCTTACTTTTCAACAGGTTTTCCTCTGCTACA----------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................CTTCCCCGCACTCAGTGTGCTC......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................TTGGGTGCTTTGGTCTTGGGTGGC..........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................TTGGGTGGCGGACAGGTGGG...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TTATCGGGCGTCTTCCTGG.........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................GGACAGGTGGGAACTATCATGG....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................AATATGTTATCGGGCGTCTTCCTG..........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CTTGGGTGGCGGACAGGT..................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................GAACGTGGAAAATTGGGTGCTTTGGT....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................TATGTTATCGGGCGTCTTCCTG..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................GACAGGTGGGAACTATCATGG....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................ATATGTTATCGGGCGTCTTCCTGGATTC.....................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................CTCCTCGCTGCTTGGGTCCCC....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................CCCCGCACTCAGTGTGCTCCT....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................CTGGATTCA---TACGATTGGCC......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CTTGGGTGGCGGACAGGTGGGAACT...........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATTGGCCATTTGTGTTCTACTT.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TGTGTTCTACTTCTTTGGCG...............................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................ACGAACGTGGAAAATTGGGT............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....TGTGCTAATGGGTCTGGGGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................TGGGTGGCGGACAGGTGGGAA.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................GTGTGCTCCTCGCTGCTTGGGT........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................TGTTCTACTTCTTTGGCGG-----C........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................TCTACTTCTTTGGCGG-----CCTGG....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCCCGTGTGCTAATGGGTCTGGGGGAGGGCACAACCTTCCCCGCACTCAGTGTGCTCCTCGCTGCTTGGGTCCCCGCAAACGAACGTGGAAAATTGGGTGCTTTGGTCTTGGGTGGCGGACAGGTGGGAACTATCATGGGTAATATGTTATCGGGCGTCTTCCTGGATTCA---TACGATTGGCCATTTGTGTTCTACTTCTTTGGCGG-----CCTGGGTGTCGTTTGGTTCGTCATCTTTGTAAGTATCACT---CA--------------------------------------CCTCAT-----CC--T-----CTACTCTGTCGGGCG---------------------------------CTAA-AAATTTC---CCTTACTTTTCAACAGGTTTTCCTCTGCTACA----------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................GTGCTTTGGTCTTGGGTGGCGGAC......................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
......GTGCTAATGGGTCTGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2
................................................................................CGAACGTGGAAAATTGGGTGCTTTGGT....................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
..CCGTGTGCTAATGGGTCTGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................A---TACGATTGGCCATTTGTGTT.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...................................................................................................GCTTTGGTCTTGGGTGGCGGAC......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....GTGTGCTAATGGGTCTGGGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................TATCGGGCGTCTTCCTGGA........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.........................................................CTCGCTGCTTGGGTCCCCGC..................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................GAACGTGGAAAATTGGGT............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
....................................................................................................CTTTGGTCTTGGGTGGCGG........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
....GTGTGCTAATGGGTCTGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................GGACAGGTGGGAACTATCATGGGT..................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................GGACAGGTGGGAACTATCATGG....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................GTTATCGGGCGTCTTCCTGGAT.......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
........................................................................................................................CAGGTGGGAACTATCATGGGTA.................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droWil2

ACTCGTGTTTTGATGGGTCTGGGCGAAGGTACCACATTCCCCGCTCTAAGTGTCTTGCTTGCTGCCTGGGTGCCAGCCAATGAACGTGGTAAATTGGGCGCCTTGGTCTTGGGAGGTGGTCAAGTGGGCACTATTATGGGTAATCTGTTATCTGGTGTATTTCTTGATGAA---TATGACTGGCCATTTGTGTTCTACTTCTTTGGCGG-----TCTGGGCGTTATATGGTTCTTGATCTTTGTAAGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACT---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................GAACGTGGTAAATTGGGCGC..........................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	3	1	0
...............................................................................................................................................................................................GTTCTACTTCTTTGGCGG-----T........................................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	2	0
.CTCGTGTTTTGATGGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	2	0
..........................................................................................AAATTGGGCGCCTTGGTCTTGGGA.............................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	3	0	0
......................................................................................................................GTCAAGTGGGCACTATTATGGGTAATCT.............................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	2	1	0
...................................................GTCTTGCTTGCTGCCTGGGTGCCAGCCA................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0
......GTTTTGATGGGTCTGGGCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0
.......TTTTGATGGGTCTGGGCGAAGGTACCAC............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	1	0	1
........................................................................................................................................................................................CATTTGTGTTCTACTTCTTTGGC................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0
...........................................................................................AATTGGGCGCCTTGGTCTTGGGAGGT..........................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0
..............................................................................AATGAACGTGGTAAATTGGGC............................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
....GTGTTTTGATGGGTCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0
............................................................................................ATTGGGCGCCTTGGTCTTGGGA.............................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0
.........................................................................................................................................................................................ATTTGTGTTCTACTTCTTTGGCGG-----TCT......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................TCTACTTCTTTGGCGG-----TCTGGGC..................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
......GTTTTGATGGGTCTGGGCGAAGGTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.............................................................................CAATGAACGTGGTAAATT................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.....................................................................................................CTTGGTCTTGGGAGGTGGTC......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...............................................................................ATGAACGTGGTAAATTGGGCGCCTT.......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
......GTTTTGATGGGTCTGGGCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.........TTGATGGGTCTGGGCGAAGGTACCAC............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1
.................................................................CTGGGTGCCAGCCAATGAACGT........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....GTGTTTTGATGGGTCTGGGCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
........................................................................................................GGTCTTGGGAGGTGGTCAAGTGGGC..............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
................................................................................................GGCGCCTTGGTCTTGGGAGGT..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
......................................CCCCGCTCTAAGTGTCTTGCTT...................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..................................................................................................................GGTGGTCAAGTGGGCACT...........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................CTGGGCGTTATATGGTTC......................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................................................................................................CTATTATGGGTAATCTGTT..........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......GTTTTGATGGGTCTGGGCGAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................ACTTCTTTGGCGG-----TCTGGGC..................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.............................................................................................................TGGGAGGTGGTCAAGTGGGCACT...........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
......GTTTTGATGGGTCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
........TTTGATGGGTCTGGGCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
......................................................................................................TTGGTCTTGGGAGGTGGTCAAGTG.................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................GAA---TATGACTGGCCATTTGT................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..........................................................................................AAATTGGGCGCCTTGGTCTTGG...............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
................................................................................................................................................................TTCTTGATGAA---TATGACT..........................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.CTCGTGTTTTGATGGGTCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...........................................................................................AATTGGGCGCCTTGGTCTTGGGA.............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...........GATGGGTCTGGGCGAAGGTACCAC............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
ACTCGTGTTTTGATGGGTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..TCGTGTTTTGATGGGTCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................GTTCTACTTCTTTGGCGG-----TCTGGGC..................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.....TGTTTTGATGGGTCTGGGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................G-----TCTGGGCGTTATATGGTTCTT....................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
............................................................................................................................................................GTATTTCTTGATGAA---TATGACT..........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................TGTTCTACTTCTTTGGCGG-----TCTGGGC..................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.....................................................................................................................GGTCAAGTGGGCACTATTATGGGTAAT...............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
........................................................................................GTAAATTGGGCGCCTTGGTCTTGGGAGG...........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.........TTGATGGGTCTGGGCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.............................................CTAAGTGTCTTGCTTGCTGCCTGGGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................GAA---TATGACTGGCCATTTGTGT..............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................GG-----TCTGGGCGTTATATGGTT.......................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...CGTGTTTTGATGGGTCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................TCTACTTCTTTGGCGG-----TCT......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................GGTCAAGTGGGCACTATTATGGGTA.................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
....GTGTTTTGATGGGTCTGGGCGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................GGCGG-----TCTGGGCGTTATATGGT........................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.......................................................................................................TGGTCTTGGGAGGTGGTCAAGT..................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................TCTGGGCGAAGGTACCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...........................................................................................AATTGGGCGCCTTGGTCTTGGG..............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
........................................................................................GTAAATTGGGCGCCTTGGTC...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
......GTTTTGATGGGTCTGGGCGAAGGTACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................TTTGTGTTCTACTTCTTTGGCGG-----.........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
............ATGGGTCTGGGCGAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
.............................................................................................TTGGGCGCCTTGGTCTTGGGAGGT..........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
........................................................................................GTAAATTGGGCGCCTTGGTCTTGGGA.............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................GTGTTCTACTTCTTTGGCGG-----T........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.........................................................................................................GTCTTGGGAGGTGGTCAAGT..................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................CTGGGCGTTATATGGTTCTTGATCTTTA............................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
........TTTGATGGGTCTGGGCGAAGGTACCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................CTTCTTTGGCGG-----TCTGGGC..................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................GATGAA---TATGACTGGCCATTTGTGTT.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.....................................................CTTGCTTGCTGCCTGGGT........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...............................................AAGTGTCTTGCTTGCTGCC.............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.......................................................................................GGTAAATTGGGCGCCTTGGTC...................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................................................................................................................................................................TTCTTGATGAA---TATGACTGGCC......................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0

droVir3

ACCCGCGTGCTGATGGGCCTCGGCGAAGGTACCACATTCCCGGCGTTGAGTGTTCTGCTTGCCGCCTGGGTGCCGGCTAATGAACGCGGCAAATTGGGCGCCTTGGTGCTGGGCGGCGGTCAGGTGGGCACCATTATGGGCAATATGCTGTCGGGGGTGTTTCTGGACTCC---TACGATTGGTCATTTGTGTTCTACTTCTTTGGCGG-----TCTTGGCGTTATTTGGTTTGTCATATTTGTAAGTATTTT------------TC-----------------------------CTGG----------TAATTA-------------------------AT--------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................GTACCACATTCCCGGCGTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GGTACCACATTCCCGGCGTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GG-----TCTTGGCGTTATTTGGT........................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................AGGTACCACATTCCCGGCGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................CAAATTGGGCGCCTTGGTG...................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AATTGGGCGCCTTGGTGCTGGGC.............................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................CCACATTCCCGGCGTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTTGGCGG-----TCTTGGCGTTATTTG..........................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................C---TACGATTGGTCATTTGTGTT.............................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AAATTGGGCGCCTTGGTG...................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCTTTGGCGG-----TCTTGGCG.................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TGCCGCCTGGGTGCCGGCTAATGAACGCGGCAAATTGGGC............................................................................................................................................................................................................................................................................................................................................................	40	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................GCAAATTGGGCGCCTTGGTGCTGGGC.............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTGCCGGCTAATGAACGCGG......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCTGCTTGCCGCCTGGGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AAATTGGGCGCCTTGGTGC..................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GAAGGTACCACATTCCCGGCGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GTTGAGTGTTCTGCTTGCC................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CTCC---TACGATTGGTCATTTGTGT..............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GGCGGTCAGGTGGGCACCAT.........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TGGACTCC---TACGATTGGTCATTTG.................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ATTATGGGCAATATGCTGTCGGGGGTG................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AGTGTTCTGCTTGCCGCCTGGGT........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGGCGAAGGTACCACATTCCCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTACCACATTCCCGGCGTT................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TTGGGCGCCTTGGTGCTGGGC.............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................GTTCTACTTCTTTGGCGG-----T........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GCCTTGGTGCTGGGCGGCGGTCAGG...................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GCCTTGGTGCTGGGCGGCG.........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GTGCTGATGGGCCTCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTCGGCGAAGGTACCACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................ATTATGGGCAATATGCTGTCGGGGGT.................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GTGTTCTGCTTGCCGCCTGGGT........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGGCGAAGGTACCACATTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACCCGCGTGCTGATGGGCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TGGGCGGCGGTCAGGTGGGCAC............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GTTGAGTGTTCTGCTTGC.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CCGCGTGCTGATGGGCCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GGCAAATTGGGCGCCTTGGTGCT.................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CTTTGGCGG-----TCTTGGCGT................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTACTTCTTTGGCGG-----TCTTGGC..................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................TGGTGCTGGGCGGCGGTCAGGT..................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GTCGGGGGTGTTTCTGGA........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GCCTTGGTGCTGGGCGGCGGT.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................ATGGGCAATATGCTGTCGGGG...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CATTATGGGCAATATGCTGTCGGG....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................ATGAACGCGGCAAATTGG..............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AAATTGGGCGCCTTGGTGCTGGGC.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTCGGCGAAGGTACCACATTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................ATTCCCGGCGTTGAGTGTTCTGCTTGCC................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................C---TACGATTGGTCATTTGTGT..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ATTGGGCGCCTTGGTGCTGGGC.............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................AATATGCTGTCGGGGGTGT...............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................CGGCGTTGAGTGTTCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CC---TACGATTGGTCATTTGT................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GG-----TCTTGGCGTTATTTGGTTTGTC...................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ACTCC---TACGATTGGTCATTTGT................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATGGGCCTCGGCGAAGGTACCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................C---TACGATTGGTCATTTGTGTTCTA..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CCACATTCCCGGCGTTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTACTTCTTTGGCGG-----TCT......................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TTCTGGACTCC---TACGATTGGTCATTTGT................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CTGCTTGCCGCCTGGGTGC......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CAATATGCTGTCGGGGGTG................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GTTCTGCTTGCCGCCTGGGTGCCGGC..................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CTTGGCGTTATTTGGTTTGTC...................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACGCGTGTCCTGATGGGCCTGGGCGAGGGCACCACATTCCCCGCATTGAGTGTCCTGCTGGCTGCCTGGGTGCCAGCCAACGAGCGTGGTAAACTGGGCGCCTTGGTCCTGGGCGGTGGTCAGGTGGGCACCATTTTGGGCAACCTGCTATCGGGCGTCTTCCTCGACACT---TACGAATGGCCATTTGTCTTCTACTTCTTTGGCGG-----TCTTGGCGTCGTTTGGTTTGTCATCTTCGTAAGTACCCT------------------------------------------------------------------------------------------------------------------------------------CACATTTTTTATGTTTCTATTTTAT-------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................AGCCAACGAGCGTGGTAAACTGGG.............................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
...................................................................................................................................................................................ATGGCCATTTGTCTTCTACTTC......................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0
.............TGGGCCTGGGCGAGGGCACCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
...........................................................................GCCAACGAGCGTGGTAAACTGGG.............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................TGCCTGGGTGCCAGCCAACGAGCGTG.......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................................ATTTGTCTTCTACTTCTTTGGCGG-----T........................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......GTCCTGATGGGCCTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................TGTCCTGCTGGCTGCCTGGGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................CTACTTCTTTGGCGG-----TCTTGGC..................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................................................................................CGAGCGTGGTAAACTGGGCGCCTTGG.....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........CCTGATGGGCCTGGGCGAGGGCACCAC............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................TGGCGTCGTTTGGTTTGTC...................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................GCACCATTTTGGGCAACCTGCTATCGGG....................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0

droGri2

ACCCGTGTGCTGATGGGTTTGGGCGAAGGTACCACATTCCCAGCCTTGAGTGTCCTGCTAGCCGCATGGGTGCCGGCCAACGAACGTGGCAAACTGGGCGCTTTGGTTCTTGGCGGTGGCCAAGTGGGCACCATTATGGGTAATTTACTATCGGGCGTCTTCCTCGAGGCC---TACGACTGGCCATTTGTGTTCTACTTCTTCGGCGG-----TCTTGGCGTTATTTGGTTTGTCATCTTTGTAAGTGAAATA---TTATTT--TC-----------------------------CTAG----------T--TTA-------------------------AT-------------------CAGGTTTA-ATCAGGAGT-CTATCTTATGTTGCAGGTCTTCCTGTGCTTCAGCGATCCCAGCTCGCATC----------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................CTTGGCGGTGGCCAAGTGGGCA.............................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0
..................................................................................................CGCTTTGGTTCTTGGCGGTGGC.......................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0
...............................................................................ACGAACGTGGCAAACTGGGCGCTTTGGT....................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1
............................................................................................................CTTGGCGGTGGCCAAGTGGG...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
.......................................................................................................................................ATGGGTAATTTACTATCGGGCGTC................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
.................................................................................GAACGTGGCAAACTGGGCGCTTTGGTT...................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0
..................................CATTCCCAGCCTTGAGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1
.......................................................................................................TGGTTCTTGGCGGTGGCCAAGTGGGC..............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0
........................................CAGCCTTGAGTGTCCTGCTA...................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1
.........................................................................................................................AAGTGGGCACCATTATGG....................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
.........................AAGGTACCACATTCCCAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
......................................................................................................TTGGTTCTTGGCGGTGGC.......................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGCGATCCCAGCTCGCA..................	21	1	1.00	1	0	1
..........................................................................................................................AGTGGGCACCATTATGGGTAATTT.............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1
......................GCGAAGGTACCACATTCCCAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
....................................................................................................CTTTGGTTCTTGGCGGTGG........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
..............................................................................................TGGGCGCTTTGGTTCTTGGCGGTGGC.......................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1
..........................................................................................................................................................................................................TCGGCGG-----TCTTGGCGTTATTTGGTTTG.....................................................................................................................................................................................................................	27	1	1.00	1	0	1
............................................................................................................................................................................................................GGCGG-----TCTTGGCGTTATTTG..........................................................................................................................................................................................................................	20	1	1.00	1	1	0
...................TGGGCGAAGGTACCACATTCCC......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
.......................................................................................................................................ATGGGTAATTTACTATCGGGCGTCTTC.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0
.............................................................................CAACGAACGTGGCAAACTGGGC............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCCTGTGCTTCAGCGATC............................	22	1	1.00	1	1	0
.......................................................................................................................................ATGGGTAATTTACTATCGGGCGTCTT..............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1
.......................................................................................................................................................................................................TCTTCGGCGG-----TCTTGGCGTT...............................................................................................................................................................................................................................	20	1	1.00	1	0	1
..............................................................................................................TGGCGGTGGCCAAGTGGGCA.............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
...................................ATTCCCAGCCTTGAGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
......................................................................................................................................................................................................TTCTTCGGCGG-----TCTTGGCG.................................................................................................................................................................................................................................	19	1	1.00	1	0	1
.................................ACATTCCCAGCCTTGAGTGTC.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
.......................................................................................GGCAAACTGGGCGCTTTG......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
.......................................................................................................................................ATGGGTAATTTACTATCGGGC...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
....................................................................................................................................ATTATGGGTAATTTACTATCGGGCGTC................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1
.............................................................................................................TTGGCGGTGGCCAAGTGGGCA.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
......................................................CTGCTAGCCGCATGGGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
.............................................................................................CTGGGCGCTTTGGTTCTTG...............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1

dan_665

scaffold_12916:11451759-11451925 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-38.4	-38.2	-38.2