ID:

dan_66

 Coordinate:

scaffold_12903:535322-535385 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.1 -26.7 -26.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTTTTATTGAATCTTTTATTTTTTAGTTATCTTCCTTTTCATGTTTATCATCCCTAATGAGAGCTATTTTCATTAATTTTTCGAAAATGATAATATCTCTGTGTTAGGGTGACAAATTTGAGAACAGTCTACAAAATAAAGTGGTGTTTATATATATTTTTAT

***********************************.((((((.((((.(((.(((((((.((((.((((.(((((...........))))).)))).))))..)))))))))).)))).))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 V055

head

 V106

head

 M044

female body

 M058

embryo

 V039

embryo
..........................................................................................ATAATATCTCTGTGTTAGGGTGA................................................... 23 0 1 80.00 80 64 12 3 1 0 0
...........................................................................................TAATATCTCTGTGTTAGGGTGA................................................... 22 0 1 62.00 62 53 6 3 0 0 0
..........................................................................................ATAATATCTCTGTGTTAGGGTG.................................................... 22 0 1 19.00 19 11 0 8 0 0 0
...........................................................................................TAATATCTCTGTGTTAGGGTG.................................................... 21 0 1 12.00 12 9 2 1 0 0 0
..................................................ATCCCTAATGAGAGCTATTTTCA........................................................................................... 23 0 1 9.00 9 2 0 7 0 0 0
..........................................................................................ATAATATCTCTGTGTTAGGGT..................................................... 21 0 1 9.00 9 6 2 1 0 0 0
...........................................................................................TAATATCTCTGTGTTAGGGTGT................................................... 22 1 1 5.00 5 5 0 0 0 0 0
..................................................ATCCCTAATGAGAGCTATTTT............................................................................................. 21 0 1 3.00 3 2 1 0 0 0 0
..........................................................................................ATAATATCTCTGTGTTAGGGTGAA.................................................. 24 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................ATAATATCTCTGTGTTAGGG...................................................... 20 0 1 3.00 3 3 0 0 0 0 0
..................................................ATCCCTAATGAGAGCTATTTTC............................................................................................ 22 0 1 2.00 2 0 1 0 0 1 0
..........................................................................................ATAATATCTCTGTGTTAGG....................................................... 19 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................CAATATCTCTGTGTTAGGGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATAATATCTCTGTGTTAGGGAGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTATATCTCTGTGTTAGGGTG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAATATCTCTGTTTTAGGGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAATATCTCTCTGTTAGGGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATAATATCTCTTTGTTAGGGTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAATATCTCTGTTTTAGGGTG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAATGTCTCTGTGTTAGGGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................ATAATATCTCTGTGTTAGGGGGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATAATATCTCTGTGTTAGTGT..................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................ATAATATCTCTGTGTTATGGTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................ATACCTACTGAGAGCTATTTT............................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TAATATCTCTGTGTTAGGGTGAC.................................................. 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAATATCTCTGTGTTAGGGTCA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAATATCTCTGTGTTAGGTTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................AATATCTCTGTGTTAGGGTGA................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...................................................TCCCTAATGAGAGCTATTTTCA........................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATAATATCTCTCTGTTAGGGTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATAATATCGCTGTGTTAGGGG..................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................ATAATATCTCTGTGCTAGGGTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................GTAATATCTCTGTGTTAGGGTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATAATATCTCTGTGTTAGGGTGG................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TAATATCACTGTGTTAGGGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ATCCCTAATGAGAGCTATTTTCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATAATATCTCTGTGTTAGGGTGTTA................................................. 25 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAATATCTCTGTGATAGGGTG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAATATCTTTGTGTTAGGGT..................................................... 20 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................TAATATCTCTGTGTTAGGGTGG................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................ATAACCTCTGTGTTAGGGTGA................................................... 21 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATAATATCTCTGCGTTAGGGTGC................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TAATATCTCTGTGTTAAGGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TAATATCTCTGTGTTAGGGTGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATAATATCTCTGTGTTAGGGTGT................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................TAATATCTCTGTGGTAGGGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATAATATCTCTGTGTCAGGGTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TAATATCTCTGTGTTAGGATGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................TAATACGTCTGTGTTAGTGTGA................................................... 22 3 5 0.20 1 0 1 0 0 0 0
..........................................................................................................................GAACAGGCTACAAAAGAA........................ 18 2 18 0.06 1 0 0 0 0 0 1

Anti-sense strand reads

AAAAAATAACTTAGAAAATAAAAAATCAATAGAAGGAAAAGTACAAATAGTAGGGATTACTCTCGATAAAAGTAATTAAAAAGCTTTTACTATTATAGAGACACAATCCCACTGTTTAAACTCTTGTCAGATGTTTTATTTCACCACAAATATATATAAAAATA

************************************.((((((.((((.(((.(((((((.((((.((((.(((((...........))))).)))).))))..)))))))))).)))).))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 V039

embryo

 M058

embryo

 V055

head
.............................................................................................................................................CACCACAACGATATATCAAAA.. 21 3 10 0.10 1 0 1 0 0
................................AAGGGAAAGTACAAAGAGTA................................................................................................................ 20 2 13 0.08 1 1 0 0 0
....................AAAAATGAAGAGAAGGAAAA............................................................................................................................ 20 2 16 0.06 1 1 0 0 0
...............................................................CGATAAAAGTATTAACAAAGC................................................................................ 21 3 17 0.06 1 0 0 1 0
............................................................................................TAATAGAGCCACAATACCA..................................................... 19 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_12903:535272-535435 + dan_66 confident TTTTTTATTGAATCTTTTATTTTTTAGTTATCTTCCTTTTCATGTTTATCATCCCTAATGAGAGCTATTTTCATTAATTTTTCGAA-----------AATGATAATATCTCTGTGT---TAGGGTGACAAATTTGAGAACAGT------------CTACAAAATAAAGTGGTGT-TTATATATATTTTTAT
droBip1 scf7180000395952:1943-2080 - TAACTAAAAA----TC--ATTTCTTAAG-----------------TTTTCTTTTTTTAATAGAAGTGAGATCGCAGTTTCTTTCAA-----------A----GGCTATCTCACTGAAATTAGAAAGAGAAACT---TGAGA------------ACCTGTCAAATAATAACATATCAACTGTATTTTTATAA
droKik1 scf7180000302798:211533-211619 - GGGAAAGGTA--------------------------TGGTGTTTGAGA-------------------------------TCGGGTGAGTTATATTC-----------------------GATTT------------AAATAAT------------TTGTAAGATATAATAATATTTAAGATATATCTTGAG
droTak1 scf7180000415843:977999-978130 - TTTTCTACGAAAACTT--GTTTTTTAAATATTTTG-AAGCACTTAAGT-------------------------------TTTAGAGAATTATATTTATGTTCTCGAAGCACTTTAT---AATTAT------------AATTGTTTGAATAACGCTGTATATTTTA----------TATATTATATTTTAAT
droGri2 scaffold_14822:226493-226630 - ATTATTAGTA--------------------------TTTTCATATTTATCTTTCTTTATGTGATTTATTTTCGTTACTTTTTTTAA-----------ATTAAATGTATCTTTCTGT---TATTGTATTTACATTATTAATG------------GTTTATTTTTTAAATTTATTT-ATTTATATATATTTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTTTTTATTGAATCTTTTATTTTTTAGTTATCTTCCTTTTCATGTTTATCATCCCTAATGAGAGCTATTTTCATTAATTTTTCGAA-----------AATGATAATATCTCTGTGT---TAGGGTGACAAATTTGAGAACAGT------------CTACAAAATAAAGTGGTGT-TTATATATATTTTTATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....................................................................................................ATAATATCTCTGTGT---TAGGGTGA................................................................23180.008010012643
......................................................................................................TAATATCTCTGTGT---TAGGGTGA................................................................22162.00620006533
.....................................................................................................ATAATATCTCTGTGT---TAGGGTG.................................................................22119.00190000118
......................................................................................................TAATATCTCTGTGT---TAGGGTG.................................................................21112.0012000291
..................................................ATCCCTAATGAGAGCTATTTTCA......................................................................................................................2319.009000027
.....................................................................................................ATAATATCTCTGTGT---TAGGGT..................................................................2119.009000261
......................................................................................................TAATATCTCTGTGT---TAGGGTGT................................................................2215.005000050
..................................................ATCCCTAATGAGAGCTATTTT........................................................................................................................2113.003000120
.....................................................................................................ATAATATCTCTGTGT---TAGGGTGAA...............................................................2413.003000030
.....................................................................................................ATAATATCTCTGTGT---TAGGG...................................................................2013.003000030
..................................................ATCCCTAATGAGAGCTATTTTC.......................................................................................................................2212.002010100
.....................................................................................................ATAATATCTCTGTGT---TAGG....................................................................1912.002000020
......................................................................................................TAATATCTCTGTGT---TAGGGTGAC...............................................................2311.001000010
.......................................................................................................AATATCTCTGTGT---TAGGGTGA................................................................2111.001000100
...................................................TCCCTAATGAGAGCTATTTTCA......................................................................................................................2211.001000010
.....................................................................................................ATAATATCTCTGTGT---TAGGGTGG................................................................2311.001000100
..................................................ATCCCTAATGAGAGCTATTTTCT......................................................................................................................2311.001000010
......................................................................................................TAATATCTCTGTGT---TAGGGTGG................................................................2211.001000010
......................................................................................................TAATATCTCTGTGT---TAGGGTGAT...............................................................2311.001000010
.....................................................................................................ATAATATCTCTGTGT---TAGGGTGT................................................................2311.001000001
droBip1
TAACTAAAAA----TC--ATTTCTTAAG-----------------TTTTCTTTTTTTAATAGAAGTGAGATCGCAGTTTCTTTCAA-----------A----GGCTATCTCACTGAAATTAGAAAGAGAAACT---TGAGA------------ACCTGTCAAATAATAACATATCAACTGTATTTTTATAASizeHit CountTotal NormTotal
No Reads
droKik1
GGGAAAGGTA--------------------------TGGTGTTTGAGA-------------------------------TCGGGTGAGTTATATTC-----------------------GATTT------------AAATAAT------------TTGTAAGATATAATAATATTTAAGATATATCTTGAGSizeHit CountTotal NormTotal
No Reads
droTak1
TTTTCTACGAAAACTT--GTTTTTTAAATATTTTG-AAGCACTTAAGT-------------------------------TTTAGAGAATTATATTTATGTTCTCGAAGCACTTTAT---AATTAT------------AATTGTTTGAATAACGCTGTATATTTTA----------TATATTATATTTTAATSizeHit CountTotal NormTotal
No Reads
droGri2
ATTATTAGTA--------------------------TTTTCATATTTATCTTTCTTTATGTGATTTATTTTCGTTACTTTTTTTAA-----------ATTAAATGTATCTTTCTGT---TATTGTATTTACATTATTAATG------------GTTTATTTTTTAAATTTATTT-ATTTATATATATTTATSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 06:45 PM