ID:

dan_65

 Coordinate:

scaffold_12903:559716-559779 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AACAATTTAAAAAATATATATTGCCTGAAATATGTATGTTTTTAAAATTTTTACGTCTGTCCAATTATTTTGTGTTTATTTTTATTTCACAACATAGATGGCCAGACGTTACAATTTTTTAAACAAAGCGGCTGTGAAGGAAAGTGTTACTAAAACTCAAATCA

***********************************.(((((..((((((...(((((((.(((.((((.(((((.............))))).)))).))).)))))))...))))))..)))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 V106

head

 M044

female body

 V055

head

 M058

embryo

 V039

embryo
...........................................................................................ACATAGATGGCCAGACGTTACA................................................... 22 0 1 76.00 76 37 26 8 5 0 0
...........................................................................................ACATAGATGGCCAGACGTTAC.................................................... 21 0 1 61.00 61 25 31 3 1 0 1
..........................................................................................AACATAGATGGCCAGACGTTAC.................................................... 22 0 1 20.00 20 7 11 1 0 1 0
...........................................................................................ACATAGATGGCCAGACGTTA..................................................... 20 0 1 17.00 17 10 5 0 2 0 0
..................................................TTACGTCTGTCCAATTATTTTG............................................................................................ 22 0 1 15.00 15 8 2 5 0 0 0
...................................................TACGTCTGTCCAATTATTTTGT........................................................................................... 22 0 1 12.00 12 8 2 1 0 1 0
...........................................................................................ACATAGATGGCCAGACGTTACAA.................................................. 23 0 1 9.00 9 0 9 0 0 0 0
...................................................TACGTCTGTCCAATTATTTTGTG.......................................................................................... 23 0 1 7.00 7 3 0 3 1 0 0
...................................................TACGTCTGTCCAATTATTTTG............................................................................................ 21 0 1 6.00 6 0 2 3 1 0 0
...........................................................................................ACATAGATGGCCAGACGTT...................................................... 19 0 1 6.00 6 2 3 0 1 0 0
...........................................................................................ACATAGATGGCCAGACGTTT..................................................... 20 1 1 5.00 5 1 2 1 1 0 0
...........................................................................................ACATAGATGGCCAGACGTTAT.................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..................................................TTACGTCTGTCCAATTATTTT............................................................................................. 21 0 1 3.00 3 0 1 1 1 0 0
............................................................................................CATGGATGGCCAGACGTTACA................................................... 21 1 1 3.00 3 0 3 0 0 0 0
..................................................TTACGTCTGTCCAATTATTT.............................................................................................. 20 0 1 2.00 2 0 2 0 0 0 0
..........................................................................................AACATGGATGGCCAGACGTTACA................................................... 23 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................ACATAGATGGCCAGACGTTAG.................................................... 21 1 1 2.00 2 1 0 0 1 0 0
............................................................................................CATAGATGGCCAGACGTTACA................................................... 21 0 1 2.00 2 2 0 0 0 0 0
..................................................TTACGTCTGTCCCATTATTTTG............................................................................................ 22 1 1 2.00 2 1 0 0 1 0 0
...........................................................................................ACATAGATGGCCAGACGTTAA.................................................... 21 1 1 2.00 2 1 1 0 0 0 0
..........................................................................................AACATAGATGGCCAGACGTTA..................................................... 21 0 1 2.00 2 2 0 0 0 0 0
..................................................TTACGTCTGTCCAATTATTTTGAA.......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................ACATAGATGGCCAGAAGTTAC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACATAGATGGCGAGACGTTAC.................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................ATATAGATGGCCAGACGTTA..................................................... 20 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................AACATAGATTGCCAGACGTTAC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTCTGTCCAATTATTTG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACATAGATGGCCACACGTTAC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................CATAGATGGCCAGACGTTAC.................................................... 20 0 1 1.00 1 1 0 0 0 0 0
....................................................ACGTCTGTCCCATTATTTTGT........................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................AACATAGATGGCCAGACGTTAA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACATAGATGGCCTGACGTTACA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AACATAGATGGCCAGACATTAC.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AACATAGATGGACAGACGTTA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACATAGATGGCCATACGGTACA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACATAGATGTCCAGACGTTACA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTCTGTCAAATTATTTTG............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...................................................TACGTCTGTCCCATTATTTTGT........................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................ACATAGATTGCCAGACGTTACA................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................ACATTGATGGCCAGACGTTACA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................ACATAGATGGCCAGAAGTTACA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACAAAGATGGCCAGACGTTACA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..................................................TTACGTCTGTACAATTATTTTG............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................AACATAGATGGCCAGACGTTGCA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................CATAGATGGCCAGACGTTACT................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................AACATAGATGGCCAGACGTT...................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................................TTACGTCTGTCCAATTATTTTT............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................ACATATATGGCCAGACGTTACA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
....................................................ACGTCTGTCCAATTATTTTG............................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................AACATAGCTGGCCAGACGTTAA.................................................... 22 2 1 1.00 1 0 0 0 0 1 0
..................................................TTACGTCTGTCCAATTATTTTTA........................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0
...................................................TGCGTCTGTCCAATTATTTTGT........................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................ACATAGATGGCCAGACGTTACAT.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
...................................................TACGCCTGTCCAATTATTTTTT........................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................AACATAGATGGCCAGACGTTCCA................................................... 23 1 1 1.00 1 0 1 0 0 0 0
...................................................TACTTCTGTCCAATTATTTTGT........................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................AACATGGATGGCCAGACGTTA..................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...................................................TACGTCTGTCTAATTATTTTGTG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACATAGATGGCCAGACGTTACC................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................ACATAGATGGACAGACGTTAC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................TACGTCTGTCCAATTATTTT............................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0
..................................................TTACGTCTGTCCAATTATTTTGT........................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACATAGATGGCCATACGTTACA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..................................................TGACGTCTGTCCAATTATTTTG............................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................ACATAGATGGCCAGATGTTAC.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACATAGATGCCCAGACGTT...................................................... 19 1 1 1.00 1 0 1 0 0 0 0
..................................................TTACGTCTGTCCAATTATTTTGA........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................AACATAGATGGCCAGACCTTA..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACATAGATGGCCAGACGTTC..................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................TTACGTCTGTCCAATTATT............................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0
.............................................AAATTTTAAGTCTGTCCAA.................................................................................................... 19 2 6 0.33 2 0 0 0 0 0 2
...........................................................................................ACATAGATGCCCAGACCGTAC.................................................... 21 3 4 0.25 1 0 0 0 1 0 0
...........................................................................................ACATAGATGGCCTGACGG....................................................... 18 2 5 0.20 1 0 0 0 1 0 0
.............................................AAATTTTAAGTCTGTCCA..................................................................................................... 18 2 17 0.18 3 0 0 0 0 0 3
.............................................................................................................................AAGCGGCTGTGGAGGAAG..................... 18 2 17 0.12 2 1 0 1 0 0 0
...........................................AAAAATTTTAAGTCTGTCCAC.................................................................................................... 21 3 10 0.10 1 0 0 0 0 1 0
.............................................................................................ACAGATGGGCGGACGTTAC.................................................... 19 3 10 0.10 1 1 0 0 0 0 0
...................................................................TTTTGGGTTTATTTTTATT.............................................................................. 19 1 16 0.06 1 0 0 0 0 0 1
..............................................ATTTTTAAGTCTGTCCAAA................................................................................................... 19 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

TTGTTAAATTTTTTATATATAACGGACTTTATACATACAAAAATTTTAAAAATGCAGACAGGTTAATAAAACACAAATAAAAATAAAGTGTTGTATCTACCGGTCTGCAATGTTAAAAAATTTGTTTCGCCGACACTTCCTTTCACAATGATTTTGAGTTTAGT

************************************.(((((..((((((...(((((((.(((.((((.(((((.............))))).)))).))).)))))))...))))))..)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M044

female body

 V039

embryo

 M058

embryo

 V055

head

 V105

male body
.........................................................................................GTTGTATCTACCGGTCTGCAAT..................................................... 22 0 1 2.00 2 2 0 0 0 0
.......................................................................................GTGTTGTATCTACCGGTCTGCA....................................................... 22 0 1 1.00 1 1 0 0 0 0
.........................................................................................GTTGTATCTACCAGTCTGCAA...................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................................CGCCGACGCTTCGTTTCATAAT............... 22 3 2 0.50 1 0 0 0 1 0
.................TATAAAGGACTTTATACA................................................................................................................................. 18 1 2 0.50 1 0 1 0 0 0
..........................................................CACGTTAATAAAACACAA........................................................................................ 18 1 2 0.50 1 0 0 1 0 0
....................................................AGAAGACAGGTTAATAAAA............................................................................................. 19 2 8 0.13 1 0 0 0 0 1
....................................................................................................CGGTCTACAATGATAAAA.............................................. 18 2 13 0.08 1 0 1 0 0 0
..........................................................................AAAGAAAAATATAGTGTTGTA..................................................................... 21 2 13 0.08 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_12903:559666-559829 + dan_65 confident AACA--ATTTAAAAAATATATATTGCCTGAAATATGTATGTTTTTAAAATTTTTACGTCTGTCCAATTATTTTGTGTTTATTTT-----TATTTCACAACATAGATGGCCAGACGTTACAATTTTTTAAACAAAGCGGCTGTGAAGGAAAGTGT--------TACTAAAACTCAAATCA
droBip1 scf7180000395925:48566-48733 - AAAA--ACAAATAAAATGT-GATAGTGTCTGGAAATTATAATTT-AAAACTGTTACATCAGTCTAGCTCGGTTGTGTTTTTTTTTTTAATATTTCACATAATAGA----CTGATGCATTCA-TTTTTAACTAAAGCAACGATCAAGCGAAGTATTTGGTGTTTAATAATACTCAAA--A
droEle1 scf7180000491278:1072167-1072180 - TAGA--GCTCAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droRho1 scf7180000778082:74467-74520 - AAAGCAATTTTAAGAGTAAAGATTGCGTTGGATAATCATATTTTTAAGATTTTT-----------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415857:724844-724855 + AAAA--TAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
droYak3 2R:7536018-7536057 + GACA--TTTCAAAAAGTATATATTTTCTAATTAATATATGTT-----------------------------------------------------------------------------------------------------------------------------------------
dp5 3:13547608-13547637 - TTAT------------------------------------------------------------------TTTGTTTTTATTTT-----TATCTCTCAC------------------------------------------------------------------------------CA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AACA--ATTTAAAAAATATATATTGCCTGAAATATGTATGTTTTTAAAATTTTTACGTCTGTCCAATTATTTTGTGTTTATTTT-----TATTTCACAACATAGATGGCCAGACGTTACAATTTTTTAAACAAAGCGGCTGTGAAGGAAAGTGT--------TACTAAAACTCAAATCASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................ACATAGATGGCCAGACGTTACA...........................................................22176.007680053726
..................................................................................................ACATAGATGGCCAGACGTTAC............................................................21161.006130112531
.................................................................................................AACATAGATGGCCAGACGTTAC............................................................22120.00201100711
..................................................................................................ACATAGATGGCCAGACGTTA.............................................................20117.00170002105
....................................................TTACGTCTGTCCAATTATTTTG.........................................................................................................22115.0015500082
.....................................................TACGTCTGTCCAATTATTTTGT........................................................................................................22112.0012110082
..................................................................................................ACATAGATGGCCAGACGTTACAA..........................................................2319.009000009
.....................................................TACGTCTGTCCAATTATTTTGTG.......................................................................................................2317.007300130
.....................................................TACGTCTGTCCAATTATTTTG.........................................................................................................2116.006300102
..................................................................................................ACATAGATGGCCAGACGTT..............................................................1916.006000123
..................................................................................................ACATAGATGGCCAGACGTTT.............................................................2015.005100112
..................................................................................................ACATAGATGGCCAGACGTTAT............................................................2113.003000030
....................................................TTACGTCTGTCCAATTATTTT..........................................................................................................2113.003100101
....................................................TTACGTCTGTCCAATTATTT...........................................................................................................2012.002000002
..................................................................................................ACATAGATGGCCAGACGTTAG............................................................2112.002000110
...................................................................................................CATAGATGGCCAGACGTTACA...........................................................2112.002000020
..................................................................................................ACATAGATGGCCAGACGTTAA............................................................2112.002000011
.................................................................................................AACATAGATGGCCAGACGTTA.............................................................2112.002000020
....................................................TTACGTCTGTCCAATTATTTTGAA.......................................................................................................2411.001000001
....................................................TTACGTCTGTCCAATTATTTG..........................................................................................................2111.001000010
...................................................................................................CATAGATGGCCAGACGTTAC............................................................2011.001000010
.................................................................................................AACATAGATGGCCAGACGTTAA............................................................2211.001000010
...................................................................................................CATAGATGGCCAGACGTTACT...........................................................2111.001100000
.................................................................................................AACATAGATGGCCAGACGTT..............................................................2011.001000010
....................................................TTACGTCTGTCCAATTATTTTT.........................................................................................................2211.001000100
......................................................ACGTCTGTCCAATTATTTTG.........................................................................................................2011.001100000
....................................................TTACGTCTGTCCAATTATTTTTA........................................................................................................2311.001000100
..................................................................................................ACATAGATGGCCAGACGTTACAT..........................................................2311.001000001
..................................................................................................ACATAGATGGCCAGACGTTACC...........................................................2211.001000100
.....................................................TACGTCTGTCCAATTATTTT..........................................................................................................2011.001100000
....................................................TTACGTCTGTCCAATTATTTTGT........................................................................................................2311.001000010
....................................................TTACGTCTGTCCAATTATTTTGA........................................................................................................2311.001100000
..................................................................................................ACATAGATGGCCAGACGTTC.............................................................2011.001000001
....................................................TTACGTCTGTCCAATTATT............................................................................................................1911.001000100
droBip1
AAAA--ACAAATAAAATGT-GATAGTGTCTGGAAATTATAATTT-AAAACTGTTACATCAGTCTAGCTCGGTTGTGTTTTTTTTTTTAATATTTCACATAATAGA----CTGATGCATTCA-TTTTTAACTAAAGCAACGATCAAGCGAAGTATTTGGTGTTTAATAATACTCAAA--ASizeHit CountTotal NormTotal
No Reads
droEle1
TAGA--GCTCAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
droRho1
AAAGCAATTTTAAGAGTAAAGATTGCGTTGGATAATCATATTTTTAAGATTTTT-----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAAA--TAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotal
No Reads
droYak3
GACA--TTTCAAAAAGTATATATTTTCTAATTAATATATGTT-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
No Reads
dp5
TTAT------------------------------------------------------------------TTTGTTTTTATTTT-----TATCTCTCAC------------------------------------------------------------------------------CASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads

Generated: 10/20/2015 at 07:28 PM