ID:

dan_637

 Coordinate:

scaffold_12916:10011852-10012002 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.74 -9.64 -9.2 -9.14

Flybase annnotation

CDS [Dana\GF14378-cds]; exon [dana_GLEANR_15140:14]; intron [Dana\GF14378-in]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAACAAGCCAAGTGAGTACTCATTTTTAAACCTCAAGCCCTATCAACTACCCAACTACAGTGTGTTAAACTATGCGTGACATGATCCACAAAAAAAAAAAAAAAAACGATAAAAACACAAACCCAAAACCCAAACAAAACGCAAACAAAGGCTATGATCGAAAACATTTAATTCCGGAAATTGAATTGGCTTGCATACATTATATGTCTGTA
**************************************************...........(((.......(((((((.......................((((......(((((.............................................................)))))))))..)))).)))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 V055
head
 V105
male body		 V039
embryo
 M044
female body
.........ATACAGGCCAAAGTGGATAATTT........................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............GCCAAAGTGGATAAGTTAGTT....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
..............GGCCAAAGTGGATAAGTTAGT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................GATAAAAACACAAACGGAAAACC.................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................AAAAAAGAAAAAGACCATAAAAACACA............................................................................................. 27 3 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................AAAACACAAACCCAAAAC................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................AAAACACGAACCCAAAACC.................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
.........................ATAAGTTAGTTGAACAACAAGCCAA......................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................CAAACCCAAAACCCCAACAAA.......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................AAGAACACAAACCCCAAACC.................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................AAAAACAAACCCAAAACCCAAACA............................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
...............GCCAAAGTGGATAAGTTAGTTGAAC................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................AAAAAAATCGATAAGAACACAA............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................AAAACGAGAAAAACACCAACC......................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0
........CATACAGGCCAAAGTGGATAATT............................................................................................................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 1 0
.........ATACAGGCCAAAGTGGATAAGTTAGT........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0
..............GGCCAAAGTGGATAAGTT........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0
....................AGTGGATAAGTTAGTTGAAC................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................AACAACACACACCCAAAACCCAAA.............................................................................. 24 2 2 0.50 1 1 0 0 0 0 0
.............................................................................CCTAACAGCTACCCAAGTACA......................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0
......................................................................................................................................................AAAACACAAACCCCAAACC.................................................................................. 19 1 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................AAACACAAACCCAAAAACCAA............................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................TGAACTACCGTGTGTTAAAC.............................................................................................................................................. 20 3 3 0.33 1 0 0 0 1 0 0
.....................................................................................................................................................AATAACACAAACCCAAAAACC................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0
....................................................................................................................GAGATGATCAACCAAAAAAAAAAAAAA............................................................................................................ 27 3 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................ACATGAACCACGAAAAAAAAAGA............................................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................................................AAAAAGACACACCCAAAACC.................................................................................. 20 2 5 0.20 1 1 0 0 0 0 0
...................................................................................................................................................ATGAAAACACAAACCCGAAA.................................................................................... 20 2 5 0.20 1 1 0 0 0 0 0
....................................................................................................................................................TAACCACACACACCCAAAACCCA................................................................................ 23 3 5 0.20 1 1 0 0 0 0 0
......................................................................................................................CATGAACCACAAAAAAAAAA................................................................................................................. 20 1 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................AAAAAACAAAGAATAAAAACACAAACC......................................................................................... 27 3 5 0.20 1 1 0 0 0 0 0
.....................................................................................................................................................AAGAACACAACCCCAAAACCCC................................................................................ 22 3 6 0.17 1 1 0 0 0 0 0
........................................................................................................................................................AACACAAACCCAGCACCCAACC............................................................................. 22 3 6 0.17 1 1 0 0 0 0 0
.......................................................................................................................................................AAACACAAACCCAAAAACC................................................................................. 19 1 6 0.17 1 1 0 0 0 0 0
.......................................................................................................................................................AAACACAACCCCAAAACCCC................................................................................ 20 2 7 0.14 1 1 0 0 0 0 0
....................................................................................................................TACATGATCTACAAAAAAAAAACA............................................................................................................... 24 3 7 0.14 1 1 0 0 0 0 0
.....................................................................................................................................................AAAAACACAAAGCCAACACC.................................................................................. 20 2 7 0.14 1 1 0 0 0 0 0
........................................................................................................................................................................................................................AAATTGAATTCGCTTGCAAA............... 20 2 8 0.13 1 0 0 0 0 0 1
......................................................................................................................................AAAAAAAAAAACGCTAAAGACACC............................................................................................. 24 3 8 0.13 1 1 0 0 0 0 0
.....................................................................................................................................................AAAAACAAACACCCAAAACCCA................................................................................ 22 2 8 0.13 1 1 0 0 0 0 0
.............................................................................................................................................AAAACGATACAAACACAAG........................................................................................... 19 2 8 0.13 1 1 0 0 0 0 0
........................................................................................................................................AAAAAAAAACGACCAAAACACA............................................................................................. 22 2 8 0.13 1 0 0 0 0 1 0
.....................................................................................................................................................AAAAACACAAACCCAAAAA................................................................................... 19 1 17 0.12 2 2 0 0 0 0 0
.......................................................................................................................AAGATCCAGAAAAAAAAAAAAAAAAA.......................................................................................................... 26 2 9 0.11 1 1 0 0 0 0 0
.....................................................................................................................................................AAAAACACGAACCAAAAACCC................................................................................. 21 2 10 0.10 1 1 0 0 0 0 0
.............................................................................................................................CACAAAAGAAAAAAAAAGAACGAC...................................................................................................... 24 3 10 0.10 1 1 0 0 0 0 0
.....................................................................................................................................................AAAAACACAAAACCAAACCCAAAACA............................................................................ 26 3 10 0.10 1 1 0 0 0 0 0
...............................................................................................................................................AAAGATAACAACACAAACC......................................................................................... 19 2 11 0.09 1 1 0 0 0 0 0
.....................................................................................................................................................................................GAACACAGGCGATGATCGA................................................... 19 3 12 0.08 1 0 0 1 0 0 0
........................................................................................................................................AAAAAAAAACGAGAAGAACAC.............................................................................................. 21 2 12 0.08 1 1 0 0 0 0 0
.....................................................................................................................................................AAAAACACACACCCAAAACT.................................................................................. 20 2 14 0.07 1 1 0 0 0 0 0
......................................................................................................................GATAATCCACAAAAAAAAAAAAAA............................................................................................................. 24 2 14 0.07 1 1 0 0 0 0 0
.........................................................................................................................................CAAAAAAACGATAAAAAC................................................................................................ 18 1 15 0.07 1 1 0 0 0 0 0
....................................................................................................................................................................AAACCCAAACAAAACCCACA................................................................... 20 2 16 0.06 1 1 0 0 0 0 0
.....................................................................................................................................................................CACCCAAACAAAACGGAAACC................................................................. 21 3 18 0.06 1 1 0 0 0 0 0
...................................................................................................................................AAAAAAAAAAACAACGATAA.................................................................................................... 20 1 19 0.05 1 1 0 0 0 0 0
.........................................................................................................................................AAAAAAAACCATGAAAACACA............................................................................................. 21 2 19 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................ACAACCCATACAAAACCCAA.................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................AAAGAACAATCAAAACACAAAC.......................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................CTATGATCGTAAACAGTAA.......................................... 19 3 20 0.05 1 0 0 0 0 1 0
.....................................................................................................................................................AAAAGCACAAACGAAAAACCC................................................................................. 21 3 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................AAAAGCATAAAAACACAAAC.......................................................................................... 20 2 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................GAAAGAAAAAAACGATAAAACC................................................................................................ 22 3 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................AAAAACACCCACCCAAAAC................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................AGAAAAAAACAAACTCAAAACCC................................................................................. 23 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CGCCTCCGGTATGTCCGGTTTCACCTATTCAATCAACTTGTTGTTCGGTTCACTCATGAGTAAAAATTTGGAGTTCGGGATAGTTGATGGGTTGATGTCACACAATTTGATACGCACTGTACTAGGTGTTTTTTTTTTTTTTTTTGCTATTTTTGTGTTTGGGTTTTGGGTTTGTTTTGCGTTTGTTTCCGATACTAGCTTTTGTAAATTAAGGCCTTTAACTTAACCGAACGTATGTAATATACAGACAT
**************************************************...........(((.......(((((((.......................((((......(((((.............................................................)))))))))..)))).)))..)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V039
embryo
 M058
embryo
...............CGGTTTTACCTATTCAAT.......................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0
.............................CCATCGACTTGTTGTTCGATT......................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1
................................................................ATGTTGGAGTTCGGGATA......................................................................................................................................................................... 18 2 5 0.20 1 0 1 0
.............................................................AAAAATTTGGATTTCGGGG........................................................................................................................................................................... 19 2 5 0.20 1 0 1 0
....................................................................................................................................................................................................................................GAACGGATGTATTATACA..... 18 2 6 0.17 1 0 1 0
................................................................................................................................................................................GTGCGCTTGTTTCCGATA......................................................... 18 2 6 0.17 1 0 1 0
.............................................................................................................................................................................................................................CTGAAGCGAACGAATGTAATA......... 21 3 10 0.10 1 0 1 0
.......................................................................................TGGGTCGATGTCAAACAA.................................................................................................................................................. 18 2 11 0.09 1 1 0 0
.............................................................................................................................................................................................................................CTCAAGCGAACGGATGTAAT.......... 20 3 12 0.08 1 0 1 0
................................................................................................................................................................................................................................AACGGAACGGATGTAATA......... 18 2 16 0.06 1 0 1 0
...........................................................................................................................................................................TTGTTGTGCGTTGGTTTCCA............................................................ 20 3 20 0.05 1 0 1 0
.............................................................................................................................................................................................................................TTTAACGGAACGGATGTAAT.......... 20 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:10011802-10012052 - dan_637 GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAACAAGCCAAGTGAGTACTCA--TTTTTAAA-CCTCAA--------GC-----CC------------TAT---------------CAACT----A-------------------C------CCAA----------------------CTACAGTGTGTTAAACTATGCGTGACA--TGATCCA---------CAAAA-AAAAAAAAAAAAACGATAAAAACACAAACCCAAAACCCAA-ACAAA----------AC----------------------GCAAACAAAGGC---------TAT--GATCGAAAACATTTAATTCCGGAAATTGAATTGGCTTG---CATACATTATATGTCT-GTA
droBip1 scf7180000396580:1021912-1022142 + GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAACAAGCCAAGTGAGTACCT---------------CATTTTTCAGA-C-----CC------------TAC---------------CAACT----A-------------------C--------------------------------ATACAGTGTGTTAAACTATGCGTGACA--TGATCCA---------CAAAA-AATATATA---A-------AAACACAAACCCAAAACCCAA-ACAAA----------AC----------------------GCAAACAAAGGC---------TAT--GATCGA-AACATTTAATTCCGGAAATTGAATTGGCTTG---CATACATTATACGTAT-CTA
droKik1 scf7180000302643:712208-712424 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTGGAACAGCAAGCCAAGTGAGTACCCA--A-----A----ACAATTACCAAAAA----CCC------------------------------CAGA---------------------------------------------------------TATATTACATGTTTAACTGAGCGTGACTTTGTGGTAC---------CGAAA-GGCA---------------AAAC--AA------TACACAA-ACAAA----------AC----------------------ACA----AAAGTTCTCTCTCCTCT--GATCGA-AACGCTTAATTCCGGAAATTGAATTGGCTTG---CATATATTAT----------
droFic1 scf7180000452110:779-1004 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTCGACCAGCAGGCCAAGTGAGTACCCA--GTG--AAACCCCCAATTACCTGAAC-----CCTATCC-------TAT---------------CAACA----A-----------------------------------------------------TGTTCTGTGTTAAACTACGCGTGACT--TGGGACC---------CAAAA-AAAAAAGA---A-------AAAC--AAA-------CCCAA-ACAAA----------AC----------------------ACAAACAAAGGC---------TGC--GATCGA-AACGTTTAATTCCGGAAATTGAATTGGCTCG---CATACATT------------
droEle1 scf7180000491273:64658-64893 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTGAGTACCCA--TTT-GAAA-CCCCAATTACCTGAAT-----TCTATC--------TAT---------------CAAC-----------------------------------------------------------TACACTGTGTTAAACTACGCGTGACT--TGGGACC---------CAAAA-AAAAAA---AAGAGGAGAAAAAC--AAG-------CCCAA-ACGAT----------AT---------------AT---GTACAAACAAAGGT---------TCCAAGATCGA-AACGTTTAATTCCGGAAATTGAATTGGCTTG---CATACATT------------
droRho1 scf7180000779577:67882-68116 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTGAGTACCCA--CTG--AAA-CCCCAATTACCTGAAC-----CCTATC--------TAT---------------CGAC-----------------------------------------------------------TACACTGTGTTAAGCTACGCGTGACT--TGGGACC---------CAAAAAAGAA---------------AAAC--AAA-CCGAGACCCAA-ACAAA----------AT---------------ACAGAATACAAACAAAGGT---------TCCCCGATCGA-AACGTTTAATTCCGGAAATTGAATCGGCTTG---CATACATTAT----------
droBia1 scf7180000302261:592110-592330 + GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTCGACCTGCAGGCCAAGTGAGTACTGA--AACTGAAG-CCCCAATTACCAG--T-----CC------------TAT---------------CAG-T------GCCT--------------T--------------------------------ATACAATGTGTTTAACAACGCGTGACT--GGGGGCC---------CGAAA-AGAA---------------AAGC--AAA-------CCCAA-ACAAA----------AC----------------------ACAAACAAAGGT---------TCC--GATCGA-AGCGTTTAATTCCGGAAATTGAATCGGCTTG---CATACATTAT----------
droTak1 scf7180000415704:374935-375168 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTAAGTACCCA--CTG--AAA-CCCCAATTACCTGAACTGAACCCTATCCCATATCATAT---------------CAGCT----A-------------------T--------------------------------ATACATTGTGTTAAACTACGCGTGACT--GGGGACC---------CAAAA-AGAA---------------AAAC--AAA-------CCCAA-ACAAA----------AC----------------------ACAAACAAAGGT---------TCC--AATCGA-AACGTTTAATTCCGGAAATTGAATTGGCTTG---CATACATT------------
droEug1 scf7180000409005:1038451-1038684 + GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTCGAACAGCAGGCCAAGTGAGTACCCA--CTG-TAAA-CCCTAATTATCTGAAA-----CCTATA--------TAT---------------A---------------------------------------------------TGT---ATCTACATTGTGTGTTAAACTACGCGTGACT--TGGGACCCCCTTCCCCCAAAA-AAAGAA--------------AAC--AAA-------ACCAA-ACAAA---------AAC----------------------ACAAACAAAGGT---------TCT--GATCGA-AACGTTTAATTCCGGAAATTGAATTGGCTTG---CATACATT------------
dm3 chr2L:5148833-5149070 + GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTGAGTACCCA--CCG--AACTTACCAATTACCAGAGC-----CATATAC--------------------------------------CT--------------TATACT-------ACTACATAC--------------CAATGTGCCTAACTACGCGTGACT--GGGGACC---------CAAAA-AGTGAAAAAAAAATG--------------C-----CAAAA-ACAAA----------AC----------------------ACAAACAAAGCT---------CCC--AATCGA-AGCGTTTAATTCCGGAAATTGTATTGGCTTG---CATACATTATATCC------
droSim2 2l:4962196-4962435 + dsi_14043 GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGGACAGCAGGCCAAGTGAGTACCCA--GTG--AAATAACCAATTACCAGAGC-----CATATAC-------T-----------------------------------------------------------ACCATATACC----------ATATAATGCGCCTAACTACGCGTGACT--GGGGACC---------CAAAA-AGTGAAAAAAAA-------AA------A-CTAAACCCCAA-ACAAA----------AC----------------------ACAAACAAAGCT---------TCC--AATCGA-AGCGTTTAATTCCGGAAATTGTATTGGCTTG---CATACATTATATCC------
droSec2 scaffold_5:3235439-3235676 + GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGGACAGCAGGCCAAGTGAGTACCCA--GTG--AAATAACCAATTACCAGAGC-----CATATAC-------T-----------------------------------------------------------ACCATATACC----------ATATAATGTGCCTAACTACGCGTGTCT--GGGGACC---------CAAAA-AGTGAAAAAAAA---------------A-CTAAACCCCAA-ACAAA----------AC----------------------ACAAACAAAGCT---------TCC--AATCGA-AGCGTTTAATTCCGGAAATTGTATTGGCTTG---CATACATTATATCC------
droYak3 2L:10375167-10375439 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTGAGTACCCA--GTG--AAA-CCCCAATTACCAGAGC-----CC------------TAT---------------CAACT----ATGCCATAAACCATATACAACATACCACCATATACCGTGTACC----------ATATAATGCGCTTAACTACGCGTGACT--GGGGACC---------CAAAA-AGAG---------------AAAC--AAA-------CCCAA-ACAAAACAAACAAAAAC----------------------AAAAACAAAGGT---------CCC--AGTCGA-ATCGTTTAATTCCGGAAATTGTATTGGCTTG---CATACATTATATT-------
droEre2 scaffold_4929:5229970-5230209 + GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAGCAGCAGGCCAAGTGAGTACCCA--GTG--AAA-CCCCAATTACCAGAAC-----CC------------TAT---------------CAACT----ATGCCA--------------T----------ATACCATTTACC----------ATATAATGTGTTTAACTACGCGTGACT--CGGGACC---------CAAAA-AGAG---------------AAAC--AAA-------CCCAA-ACAAA----------AC----------------------ACAAACAAAGGT---------CCC--AATCGA-AACGTTTAATTCCGGAAATTGTATTGGCTTG---CATACATTATATCT------
dp5 4_group3:2751150-2751407 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTAAGTACATCCCA----A-----ACTATTCCCAT--T-----TC------------TATTTTTAGTAACCATTTAAAGT---G-------------------------------------------TGTACAATGTACATCGTGTGTTAAGCTATGCGTGACA--TGATATG-------------A-CGAG---------------TATT---CC-------CCCCAACAAAA----------ACGAAATCAAACTTTTT----------------TGTTCTCTG---TCT--GAACGAAAACGTTTAAGCCCGGAAATTGAATCGGCTTGCTGCATACATTAGGGTA-CCACG
droPer2 scaffold_1:4236754-4236994 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTAAGTACATCCCA----A-----ACTATTCCCAT--T-----GC------------TATTTTTAGTAACCATTTAAAGT---G-------------------------------------------TGTACAATGTACATCGTGTGTTAAGCTATGCGTGACA--TGATATG-------------A-CGAG---------------TATT---CC-------CCCCAACAAAA----------CCGAAATCAAACTTTTT----------------TGTTCTCTG---TCT--GAACGAAAACGTTTAAGCCCGGAAATTGAATCGGCTTG---C-TGCA--------------
droWil2 scf2_1100000004585:1131844-1131994 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAAGCAAAGTGAGTAAAGC----A------AACCAATTATCTAATT-----ACTAC---------TAT--TTACT--------CAA-AAAAT-------------------------------------------TCTACAA--TTGTTTCCATGTTTAACTATGCGTGACA--TGATAGC---------AAAAA-CAAA----------------------------------------------------A--------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:6450320-6450380 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTCGAACAGCAATCAAAGTGAGTACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:25596189-25596248 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAAGCAAAGTGAGTATCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:9678286-9678342 - GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTCGAACAGCAATCAAAGTGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAACAAGCCAAGTGAGTACTCA--TTTTTAAA-CCTCAA--------GC-----CC------------TAT---------------CAACT----A-------------------C------CCAA----------------------CTACAGTGTGTTAAACTATGCGTGACA--TGATCCA---------CAAAA-AAAAAAAAAAAAACGATAAAAACACAAACCCAAAACCCAA-ACAAA----------AC----------------------GCAAACAAAGGC---------TAT--GATCGAAAACATTTAATTCCGGAAATTGAATTGGCTTG---CATACATTATATGTCT-GTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............GCCAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..............GGCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
................................................................................................................................................................................................................................................................AAAACACAAACCCAAAAC...................................................................................................................................1811.001010000
.........................ATAAGTTAGTTGAACAACAAGCCAA...................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...............GCCAAAGTGGATAAGTTAGTTGAAC.............................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.........ATACAGGCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
..............GGCCAAAGTGGATAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
....................AGTGGATAAGTTAGTTGAAC.............................................................................................................................................................................................................................................................................................................................................................................2011.001000100
...............................................................................................................................................................................................................................................................AAAAACACAAACCCAAAAA...................................................................................................................................19170.122020000
droBip1
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAACAAGCCAAGTGAGTACCT---------------CATTTTTCAGA-C-----CC------------TAC---------------CAACT----A-------------------C--------------------------------ATACAGTGTGTTAAACTATGCGTGACA--TGATCCA---------CAAAA-AATATATA---A-------AAACACAAACCCAAAACCCAA-ACAAA----------AC----------------------GCAAACAAAGGC---------TAT--GATCGA-AACATTTAATTCCGGAAATTGAATTGGCTTG---CATACATTATACGTAT-CTASizeHit CountTotal NormTotal
No Reads
droKik1
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTGGAACAGCAAGCCAAGTGAGTACCCA--A-----A----ACAATTACCAAAAA----CCC------------------------------CAGA---------------------------------------------------------TATATTACATGTTTAACTGAGCGTGACTTTGTGGTAC---------CGAAA-GGCA---------------AAAC--AA------TACACAA-ACAAA----------AC----------------------ACA----AAAGTTCTCTCTCCTCT--GATCGA-AACGCTTAATTCCGGAAATTGAATTGGCTTG---CATATATTAT----------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTCGACCAGCAGGCCAAGTGAGTACCCA--GTG--AAACCCCCAATTACCTGAAC-----CCTATCC-------TAT---------------CAACA----A-----------------------------------------------------TGTTCTGTGTTAAACTACGCGTGACT--TGGGACC---------CAAAA-AAAAAAGA---A-------AAAC--AAA-------CCCAA-ACAAA----------AC----------------------ACAAACAAAGGC---------TGC--GATCGA-AACGTTTAATTCCGGAAATTGAATTGGCTCG---CATACATT------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTGAGTACCCA--TTT-GAAA-CCCCAATTACCTGAAT-----TCTATC--------TAT---------------CAAC-----------------------------------------------------------TACACTGTGTTAAACTACGCGTGACT--TGGGACC---------CAAAA-AAAAAA---AAGAGGAGAAAAAC--AAG-------CCCAA-ACGAT----------AT---------------AT---GTACAAACAAAGGT---------TCCAAGATCGA-AACGTTTAATTCCGGAAATTGAATTGGCTTG---CATACATT------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTGAGTACCCA--CTG--AAA-CCCCAATTACCTGAAC-----CCTATC--------TAT---------------CGAC-----------------------------------------------------------TACACTGTGTTAAGCTACGCGTGACT--TGGGACC---------CAAAAAAGAA---------------AAAC--AAA-CCGAGACCCAA-ACAAA----------AT---------------ACAGAATACAAACAAAGGT---------TCCCCGATCGA-AACGTTTAATTCCGGAAATTGAATCGGCTTG---CATACATTAT----------SizeHit CountTotal NormTotal
No Reads
droBia1
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTCGACCTGCAGGCCAAGTGAGTACTGA--AACTGAAG-CCCCAATTACCAG--T-----CC------------TAT---------------CAG-T------GCCT--------------T--------------------------------ATACAATGTGTTTAACAACGCGTGACT--GGGGGCC---------CGAAA-AGAA---------------AAGC--AAA-------CCCAA-ACAAA----------AC----------------------ACAAACAAAGGT---------TCC--GATCGA-AGCGTTTAATTCCGGAAATTGAATCGGCTTG---CATACATTAT----------SizeHit CountTotal NormTotal
No Reads
droTak1
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTAAGTACCCA--CTG--AAA-CCCCAATTACCTGAACTGAACCCTATCCCATATCATAT---------------CAGCT----A-------------------T--------------------------------ATACATTGTGTTAAACTACGCGTGACT--GGGGACC---------CAAAA-AGAA---------------AAAC--AAA-------CCCAA-ACAAA----------AC----------------------ACAAACAAAGGT---------TCC--AATCGA-AACGTTTAATTCCGGAAATTGAATTGGCTTG---CATACATT------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTCGAACAGCAGGCCAAGTGAGTACCCA--CTG-TAAA-CCCTAATTATCTGAAA-----CCTATA--------TAT---------------A---------------------------------------------------TGT---ATCTACATTGTGTGTTAAACTACGCGTGACT--TGGGACCCCCTTCCCCCAAAA-AAAGAA--------------AAC--AAA-------ACCAA-ACAAA---------AAC----------------------ACAAACAAAGGT---------TCT--GATCGA-AACGTTTAATTCCGGAAATTGAATTGGCTTG---CATACATT------------SizeHit CountTotal NormTotal
No Reads
dm3
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTGAGTACCCA--CCG--AACTTACCAATTACCAGAGC-----CATATAC--------------------------------------CT--------------TATACT-------ACTACATAC--------------CAATGTGCCTAACTACGCGTGACT--GGGGACC---------CAAAA-AGTGAAAAAAAAATG--------------C-----CAAAA-ACAAA----------AC----------------------ACAAACAAAGCT---------CCC--AATCGA-AGCGTTTAATTCCGGAAATTGTATTGGCTTG---CATACATTATATCC------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................GTGCCTAACTACGCGTGAC................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GGCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000
...............GCCAAAGTGGATAAGTTAGTTGAA..............................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AAAGTGGATAAGTTAGTTG................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TAACTACGCGTGACT--GGGGAC.......................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000
..................................TTGAACAGCAGGCCAAGTGA...............................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
.................CAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................AACTACGCGTGACT--GGGGACC---------.............................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..........TACAGGCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000
....................AGTGGATAAGTTAGTTGA...............................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
....................AGTGGATAAGTTAGTTGAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TGAACAGCAGGCCAAGTGAGT.............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........ACAGGCCAAAGTGGATAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................ATGTGCCTAACTACGCGTGACT--GGGGA........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................AGTGGATAAGTTAGTTGAACAGCAG........................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAAAGTGGATAAGTTAGTTGAACAATC.........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAGTTAGTTGAACAGCAGGCC.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TACGCGTGACT--GGGGACA---------T............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............GCCAAAGTGGATAAGTTAGTTGA...............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TTGAACAGCAGGCCAAGTGAG..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..............GGCCAAAGTGGATAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGGCCAAAGTGGATAAGTTAGTTGAAC.............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TTAATTCCGGAAATTGTATTG............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................AAGTTAGTTGAACAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CGTGACT--GGGGACC---------CAAAA-AGT....................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........ATACAGGCCAAAGTGGATAAGTTA....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TACGCGTGACT--GGGGACC---------C............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TGGATAAGTTAGTTGAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GTTAGTTGAACAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATAAGTTAGTTGAACAGCAGG.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....................GTGGATAAGTTAGTTGAACAGCAG........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................AAGTGGATAAGTTAGTTG................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CATACAGGCCAAAGTGGATAAC.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.................CAAAGTGGATAAGTTAGTTGAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................AAAGTGGATAAGTTAGTTGAACAG...........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.................CAAAGTGGATAAGTTAGTTGA...............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........ATACAGGCCAAAGTGGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................GTGGATAAGTTAGTTGAA..............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................TTAGTTGAACAGCAGGCCAA...................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAGTGGATAAGTTAGTTGAACAGC..........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............GGCCAAAGTGGATAAGTTAGTATC...............................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CAAAA-AGTGAAAAAAAAA..........................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CATACAGGCCAAAGTGGAATC........................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGGACAGCAGGCCAAGTGAGTACCCA--GTG--AAATAACCAATTACCAGAGC-----CATATAC-------T-----------------------------------------------------------ACCATATACC----------ATATAATGCGCCTAACTACGCGTGACT--GGGGACC---------CAAAA-AGTGAAAAAAAA-------AA------A-CTAAACCCCAA-ACAAA----------AC----------------------ACAAACAAAGCT---------TCC--AATCGA-AGCGTTTAATTCCGGAAATTGTATTGGCTTG---CATACATTATATCC------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................TGGATAAGTTAGTTGGACAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................2512.00200000000020000000
.......................GGATAAGTTAGTTGGACAGC..........................................................................................................................................................................................................................................................................................................................................................................2012.00202000000000000000
..............................TTAGTTGGACAGCAGGCCAA...................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
......................TGGATAAGTTAGTTGGACAGCAGGCCAAA..................................................................................................................................................................................................................................................................................................................................................................2912.00200000000020000000
........................................................................................................................................................................................................AACTACGCGTGACT--GGGGACC---------CA...........................................................................................................................................................................2311.00100100000000000000
.......................GGATAAGTTAGTTGGACAGCAGGCCAA...................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
........................GATAAGTTAGTTGGACAGCAGGCCAA...................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
........CATACAGGCCAAAGTGGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
........................GATAAGTTAGTTGGACAGCAGGCC.....................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
..............................................................................................................................................................................................................GCGTGACT--GGGGACC---------CAA..........................................................................................................................................................................1811.00100001000000000000
...........................AAGTTAGTTGGACAGCAGGCCAA...................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
droSec2
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGGACAGCAGGCCAAGTGAGTACCCA--GTG--AAATAACCAATTACCAGAGC-----CATATAC-------T-----------------------------------------------------------ACCATATACC----------ATATAATGTGCCTAACTACGCGTGTCT--GGGGACC---------CAAAA-AGTGAAAAAAAA---------------A-CTAAACCCCAA-ACAAA----------AC----------------------ACAAACAAAGCT---------TCC--AATCGA-AGCGTTTAATTCCGGAAATTGTATTGGCTTG---CATACATTATATCC------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........CATACAGGCCAAAGTGGATAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...............GCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..............GGCCAAAGTGGATAAGTTA....................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..............................TTAGTTGGACAGCAGGCCAA...................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...............................TAGTTGGACAGCAGGCCAAG..................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.................CAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.................CAAAGTGGATAAGTTAGTTGGACAGC..........................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.........ATACAGGCCAAAGTGGATAAGT......................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.........ATACAGGCCAAAGTGGAT..........................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.........ATACAGGCCAAAGTGGATAAGTTA....................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.........................ATAAGTTAGTTGGACAGCAG........................................................................................................................................................................................................................................................................................................................................................................2011.0010100
droYak3
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTGAGTACCCA--GTG--AAA-CCCCAATTACCAGAGC-----CC------------TAT---------------CAACT----ATGCCATAAACCATATACAACATACCACCATATACCGTGTACC----------ATATAATGCGCTTAACTACGCGTGACT--GGGGACC---------CAAAA-AGAG---------------AAAC--AAA-------CCCAA-ACAAAACAAACAAAAAC----------------------AAAAACAAAGGT---------CCC--AGTCGA-ATCGTTTAATTCCGGAAATTGTATTGGCTTG---CATACATTATATT-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................CCAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
..............GGCCAAAGTGGATAAGTTAG...................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
................CCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.........ATACAGGCCAAAGTGGATAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
........CATACAGGCCAAAGTGGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........CATACAGGCCAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
........CATACAGGCCAAAGTGGATAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.......................GGATAAGTTAGTTGAACAGCAGGCCAA...................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.................CAAAGTGGATAAGTTAGTTGAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAGCAGCAGGCCAAGTGAGTACCCA--GTG--AAA-CCCCAATTACCAGAAC-----CC------------TAT---------------CAACT----ATGCCA--------------T----------ATACCATTTACC----------ATATAATGTGTTTAACTACGCGTGACT--CGGGACC---------CAAAA-AGAG---------------AAAC--AAA-------CCCAA-ACAAA----------AC----------------------ACAAACAAAGGT---------CCC--AATCGA-AACGTTTAATTCCGGAAATTGTATTGGCTTG---CATACATTATATCT------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........CATACAGGCCAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.........ATACAGGCCAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
...............GCCAAAGTGGATAAGTTAGTTGA...............................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
........CATACAGGCCAAAGTGGATAA........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
........CATACAGGCCAAAGTGGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
........................GATAAGTTAGTTGAGCAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.....................GTGGATAAGTTAGTTGAGC.............................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
........CATACAGGCCAAAGTGGATAAGTT.....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
........CATACAGGCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
........................GATAAGTTAGTTGAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
........................GATAAGTTAGTTGAGCAGCAGGCCAA...................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
....................AGTGGATAAGTTAGTTGA...............................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
dp5
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTAAGTACATCCCA----A-----ACTATTCCCAT--T-----TC------------TATTTTTAGTAACCATTTAAAGT---G-------------------------------------------TGTACAATGTACATCGTGTGTTAAGCTATGCGTGACA--TGATATG-------------A-CGAG---------------TATT---CC-------CCCCAACAAAA----------ACGAAATCAAACTTTTT----------------TGTTCTCTG---TCT--GAACGAAAACGTTTAAGCCCGGAAATTGAATCGGCTTGCTGCATACATTAGGGTA-CCACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................GTGGATAAGTTAGTTGAACAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................2612.0020000000002
.........ATACAGGCCAAAGTGGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
........CATACAGGCCAAAGTGGAT..........................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
...............................TAGTTGAACAGCAGGCCAAGT.................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............GGCCAAAGTGGATAAGTTAGTTG................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........ATACAGGCCAAAGTGGATAAGTTA....................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........ATACAGGCCAAAGTGGATAAGTTAG...................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
............................................................................................................ATTTTTAGTAACCATTTAAAG....................................................................................................................................................................................................................................................................................2111.0010100000000
............................AGTTAGTTGAACAGCAGGCC.....................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................GTACAATGTACATCGTGTGT...............................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................AATTGAATCGGCTTGCTGCA..................2011.0010100000000
...........................AAGTTAGTTGAACAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000
..............GGCCAAAGTGGATAAGTTAGTTGA...............................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................TTGCTGCATACATTAGGGTA-.....2011.0010100000000
........CATACAGGCCAAAGTGGATAAGT......................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................................................................................................................................................................................................................................................GTTCTCTG---TCT--GAACGAAAAC...................................................2111.0010100000000
...............GCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.................CAAAGTGGATAAGTTAGTTGAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
...........................AAGTTAGTTGAACAGCAGGCC.....................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................CCAAAGTGGATAAGTTAGTC.................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
droPer2
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAGGCCAAGTAAGTACATCCCA----A-----ACTATTCCCAT--T-----GC------------TATTTTTAGTAACCATTTAAAGT---G-------------------------------------------TGTACAATGTACATCGTGTGTTAAGCTATGCGTGACA--TGATATG-------------A-CGAG---------------TATT---CC-------CCCCAACAAAA----------CCGAAATCAAACTTTTT----------------TGTTCTCTG---TCT--GAACGAAAACGTTTAAGCCCGGAAATTGAATCGGCTTG---C-TGCA--------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........ATACAGGCCAAAGTGGATAAGT......................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
.....................GTGGATAAGTTAGTTGAAC.............................................................................................................................................................................................................................................................................................................................................................................1912.002000002
.........ATACAGGCCAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
..................................................................................................................................................................................................................................................................ATT---CC-------CCCCAACAAAA----------CCGAA..........................................................................................................2111.001001000
droWil2
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAAGCAAAGTGAGTAAAGC----A------AACCAATTATCTAATT-----ACTAC---------TAT--TTACT--------CAA-AAAAT-------------------------------------------TCTACAA--TTGTTTCCATGTTTAACTATGCGTGACA--TGATAGC---------AAAAA-CAAA----------------------------------------------------A--------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........CATACAGGCCAAAGTGGATAAGT......................................................................................................................................................................................................................................................................................................................................................................................2315.00500131
.........ATACAGGCCAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................2712.00200020
.................CAAAGTGGATAAGTTAGTTGAACAGC..........................................................................................................................................................................................................................................................................................................................................................................2612.00200110
.................CAAAGTGGATAAGTTAGTTGA...............................................................................................................................................................................................................................................................................................................................................................................2111.00100001
.........................ATAAGTTAGTTGAACAGCAA........................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..........TACAGGCCAAAGTGGATAAGT......................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.....................GTGGATAAGTTAGTTGAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.................CAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...................AAGTGGATAAGTTAGTTGAAC.............................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...................AAGTGGATAAGTTAGTTGAACA............................................................................................................................................................................................................................................................................................................................................................................2211.00100001
........................................AGCAAGCAAAGTGAGTAAAG.........................................................................................................................................................................................................................................................................................................................................................2011.00100010
........CATACAGGCCAAAGTGGATAA........................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
..........TACAGGCCAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.............................GTTAGTTGAACAGCAAGC......................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................TAGTTGAACAGCAAGCAA....................................................................................................................................................................................................................................................................................................................................................................1811.00101000
....................AGTGGATAAGTTAGTTGAACAGC..........................................................................................................................................................................................................................................................................................................................................................................2311.00100100
........................GATAAGTTAGTTGAACAGC..........................................................................................................................................................................................................................................................................................................................................................................1911.00100001
.........ATACAGGCCAAAGTGGATAAGTTA....................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
....................AGTGGATAAGTTAGTTGAAC.............................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..........................TAAGTTAGTTGAACAGCAA........................................................................................................................................................................................................................................................................................................................................................................1911.00100010
........CATACAGGCCAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
.........ATACAGGCCAAAGTGGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
..............GGCCAAAGTGGATAAGTTAGTT.................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...........ACAGGCCAAAGTGGATAAGTTAGTTG................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
...................AAGTGGATAAGTTAGTTGAA..............................................................................................................................................................................................................................................................................................................................................................................2011.00100100
droVir3
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTCGAACAGCAATCAAAGTGAGTACCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............GGCCAAAGTGGATAAGTTAGTCGAAC.............................................................................................................................................................................................................................................................................................................................................................................2616.006060000000000000000000000000000000000000000000000000000000000000
.................CAAAGTGGATAAGTTAGTCGAACA............................................................................................................................................................................................................................................................................................................................................................................2412.002000001000000000100000000000000000000000000000000000000000000000
.........ATACAGGCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000001000010000000000000000000000000000000000000000
..............GGCCAAAGTGGATAAGTTAGTCGAACAG...........................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
......................TGGATAAGTTAGTCGAAC.............................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
........CATACAGGCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
........................GATAAGTTAGTCGAACAGCAAT.......................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
.............AGGCCAAAGTGGATAAGTTAGTCGAA..............................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.............AGGCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
..............GGCCAAAGTGGATAAGTTAGTCGAACAGC..........................................................................................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
.......................GGATAAGTTAGTCGAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................CCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............................GTTAGTCGAACAGCAATCA.....................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
..................AAAGTGGATAAGTTAGTCGAAC.............................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
............................AGTTAGTCGAACAGCAATCA.....................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
.........ATACAGGCCAAAGTGGATAA........................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
.................CAAAGTGGATAAGTTAGTC.................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.............................GTTAGTCGAACAGCAATCAA....................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.........ATACAGGCCAAAGTGGATAAGT......................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTTGAACAGCAAGCAAAGTGAGTATCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................GGATAAGTTAGTTGAACAGCAA........................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................AGTGGATAAGTTAGTTGA...............................................................................................................................................................................................................................................................................................................................................................................1811.001000001
........CATACAGGCCAAAGTGGATAAGTTA....................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............................GTTAGTTGAACAGCAAGCAAA...................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............GGCCAAAGTGGATAAGTTAGT..................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........CATACAGGCCAAAGTGGAT..........................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............GCCAAAGTGGATAAGTTAGTTGAACAGC..........................................................................................................................................................................................................................................................................................................................................................................2811.001000001
droGri2
GCGGAGGCCATACAGGCCAAAGTGGATAAGTTAGTCGAACAGCAATCAAAGTGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................CAAAGTGGATAAGTTAGTCG................................................................................................................................................................................................................................................................................................................................................................................2011.00110
....................AGTGGATAAGTTAGTCGAACA............................................................................................................................................................................................................................................................................................................................................................................2111.00101

Generated: 05/17/2015 at 10:48 PM