ID:

dan_610

 Coordinate:

scaffold_12916:8969401-8969551 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.8 -19.7 -19.7

Flybase annnotation

exon [dana_GLEANR_15198:3]; CDS [Dana\GF14436-cds]; intron [Dana\GF14436-in]

No Repeatable elements found

mature
  1. scaffold_12586:592704-592731 -
  2. scaffold_12905:439484-439511 -
  3. dan_610  scaffold_12916:8969451-8969478 -
  4. scaffold_12926:33991-34018 +
  5. scaffold_13089:446197-446224 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATTATTTATTTTCTGAGATTTATAACATTTTTGATTAAAAATGCCGCGTTTTAATATTTTGGGGTCTTATCCCTCTTTTTTTTAATCAGAATTAATAAGTTCATTAGCAGCTTTAGCTGTTTTACATTCTGCCTTACAACGCCCGAAGCCAATTTTATTTACTTTAACAATGTCATTAAGTTTAAGCTTAATAATTGAAGCTCGATATATCCGTGGCTTCTGCCTGACGAAACTGATCCCCACTTCATCT
**************************************************...........((((......))))............(((((((((..........((((((....))))))))).))))))....................................((((...(((((((....))))))).))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V055
head
...........................................................................................................................TACATTCTGCCTTACAACGCCCGAAGCC.................................................................................................... 28 0 5 7.80 39 31 8 0 0
...........................................................................................................................TACATTCTGCCTTACAACGCCCGAAGC..................................................................................................... 27 0 5 5.60 28 20 8 0 0
...........................................................................................................................TACATTCTGCCTTACAACGCCCGAAG...................................................................................................... 26 0 5 2.80 14 10 4 0 0
...........................................................................................................................TACATTCTGCCTTACAACGCCCGAA....................................................................................................... 25 0 5 2.80 14 12 2 0 0
..............................................................................................................................................................................................................................GCCTGACGAAACTGATCCCCAC....... 22 0 2 0.50 1 0 1 0 0
.............................................................................................................................................................................................................................CGCCTGACGAAACTGATCCCCACT...... 24 1 2 0.50 1 0 1 0 0
......................................................................................................................TGTTTTACATTCTGCCTTACAACGCCC.......................................................................................................... 27 0 4 0.50 2 1 1 0 0
.............................................................................................................................................................................................................................TGCCTGACGAAACTGATCCCCA........ 22 0 2 0.50 1 0 1 0 0
.............................................................................................................................................................................................................................TGCCTGACGAAACTGATCCCCAC....... 23 0 2 0.50 1 0 1 0 0
...........................................................................................................................TACATTCTGCCTTACAACGCCCGA........................................................................................................ 24 0 5 0.40 2 2 0 0 0
......................................................................................................................................TTACAACGCCCGAAGCCAATTTTATT........................................................................................... 26 0 5 0.40 2 2 0 0 0
.............................................................................................................................CATTCTGCCTTACAACGCCCGAAGCC.................................................................................................... 26 0 5 0.40 2 2 0 0 0
.......................................................................................................................................TACAACGCCCGAAGCCAATTTTATT........................................................................................... 25 0 5 0.40 2 1 1 0 0
...........................................................................................................................TACATTCTGCCTTACAACGCCCGAGGCC.................................................................................................... 28 1 5 0.20 1 1 0 0 0
........................................................................................................................TTTTACATTCTGCCTTACAACGCCCGA........................................................................................................ 27 0 5 0.20 1 1 0 0 0
.........................................................................................................................TTTACATTCTGCCTTACAACGCCCGAA....................................................................................................... 27 0 5 0.20 1 1 0 0 0
................................................................................................................................TCTGCCTTACAACGCCCGAAG...................................................................................................... 21 0 5 0.20 1 1 0 0 0
..........................................................................................................................TTACATTCTGCCTTACAACGCCCGAAGC..................................................................................................... 28 0 5 0.20 1 0 1 0 0
............................................................................................................................ACATTCTGCCTTACAACGCCCGAAGCC.................................................................................................... 27 0 5 0.20 1 1 0 0 0
.......................................................................................................................CGTTTACATTCTGCCTTACAACGCC........................................................................................................... 25 2 5 0.20 1 1 0 0 0
..........................................................................................................................TTACATTCTGCCTTACAACGCCCGAA....................................................................................................... 26 0 5 0.20 1 1 0 0 0
.................................................................................................................................CTGCCTTACAACGCCCGAAGCC.................................................................................................... 22 0 5 0.20 1 1 0 0 0
...........................................................................................................................TACATTCTTCCTTACAACGCCCGAAGCCA................................................................................................... 29 1 5 0.20 1 0 1 0 0
..........................................................................................................................TTACATTCTGCCTTACAACGCC........................................................................................................... 22 0 5 0.20 1 1 0 0 0
............................................................................................................................ACATTCTGCCTTACAACGCCC.......................................................................................................... 21 0 5 0.20 1 1 0 0 0
........................................................................................................................TGTTACATTCTGCCTTACAACGCCCGAA....................................................................................................... 28 1 5 0.20 1 1 0 0 0
...........................................................................................................................TACATTCTGCCTTACAACGCC........................................................................................................... 21 0 5 0.20 1 1 0 0 0
.........................................................................................................................TTTACATTCTGCCTTACAACGCCCGAAT...................................................................................................... 28 1 5 0.20 1 1 0 0 0
.........................................................................................................................TTTACATTCTGCCTTACAACGCCCGAAG...................................................................................................... 28 0 5 0.20 1 0 1 0 0
...........................................................................................................................TACATTCTGCCTTACAACGCCCGAAGT..................................................................................................... 27 1 5 0.20 1 1 0 0 0
...........................................................................................................................TACATTCTGCCTTACAACGCCCGAAGCCA................................................................................................... 29 0 5 0.20 1 0 1 0 0
........................................................................................................................TTTTACATTCTGCCTTACAACGCCC.......................................................................................................... 25 0 5 0.20 1 1 0 0 0
......................................................................................................................................TTACAACGCCCGAAGCCAATTTTAT............................................................................................ 25 0 5 0.20 1 0 1 0 0
...........................................................................................................................TACAATCTGCCTTACAACGCCCGAAG...................................................................................................... 26 1 5 0.20 1 1 0 0 0
...........................................................................................................................TACTTTCTGCCTTACAACGCCCGAAG...................................................................................................... 26 1 5 0.20 1 0 1 0 0
...........................................................................................................................TACATTCTGCCTTACAACGCCCGAAGCT.................................................................................................... 28 1 5 0.20 1 1 0 0 0
...........................................................................................................................TAAATTCTGCCTTACAACGAC........................................................................................................... 21 2 5 0.20 1 1 0 0 0
...........................................................................................................................TTCATTCTGCCTTACAACGCCCGAAGC..................................................................................................... 27 1 5 0.20 1 1 0 0 0
.......................................................................................................................................TACAACGCCCGAAGCCAATTTTATTTAC........................................................................................ 28 0 5 0.20 1 1 0 0 0
...........................................................................................................................TGCATTCTGCCTTACAACGCCCGAA....................................................................................................... 25 1 6 0.17 1 1 0 0 0
...........................................................................................................................TGCATTCTGCCTTACAACGCCCGAAGC..................................................................................................... 27 1 6 0.17 1 1 0 0 0
.............CTGAGATTTATAACATTTTTGATTAA.................................................................................................................................................................................................................... 26 0 7 0.14 1 0 1 0 0
.................GATTTATAACATTTTTGAT....................................................................................................................................................................................................................... 19 0 7 0.14 1 1 0 0 0
........ATTTTAGCAGATTTATAACATTT............................................................................................................................................................................................................................ 23 3 8 0.13 1 0 0 1 0
.................................................................................................................................................................................................GATGGAAGCTCGATATA......................................... 17 2 19 0.05 1 0 0 0 1

Anti-sense strand reads

ATAATAAATAAAAGACTCTAAATATTGTAAAAACTAATTTTTACGGCGCAAAATTATAAAACCCCAGAATAGGGAGAAAAAAAATTAGTCTTAATTATTCAAGTAATCGTCGAAATCGACAAAATGTAAGACGGAATGTTGCGGGCTTCGGTTAAAATAAATGAAATTGTTACAGTAATTCAAATTCGAATTATTAACTTCGAGCTATATAGGCACCGAAGACGGACTGCTTTGACTAGGGGTGAAGTAGA
**************************************************...........((((......))))............(((((((((..........((((((....))))))))).))))))....................................((((...(((((((....))))))).))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 V106
head
 M044
female body
 V055
head
 M058
embryo
 V039
embryo
....................................................................................................................................................................................................................GCACCGAAGACGGACTGCTTTGACT.............. 25 0 1 17.00 17 13 2 1 1 0 0
....................................................................................................................................................................................................................GCACCGAAGACGGACTGCTTTGACTAG............ 27 0 1 9.00 9 6 1 2 0 0 0
...................................................................................................................................................................................................................GGCACCGAAGACGGACTGCTTTGACT.............. 26 0 1 6.00 6 6 0 0 0 0 0
..................................................................................................................................................................................................................AGGCACCGAAGACGGACTGCTTTGACT.............. 27 0 1 3.00 3 0 1 2 0 0 0
...........................................................................................................................................................................................................................AGACGGACTGCTTTGACTAGGGGT........ 24 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................TCGAATTATTAACTTCGAGCTATATAG....................................... 27 0 1 2.00 2 1 1 0 0 0 0
...................................................................................................................................................................................................................GGCACCGAAGACGGACTGCTTTGAC............... 25 0 1 2.00 2 1 1 0 0 0 0
.........................................................................................................................................................................................................................GAAGACGGACTGCTTTGACTAGGGGT........ 26 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................................................................................................................................CACCGAAGACGGACTGCTTTGACT.............. 24 0 1 2.00 2 1 1 0 0 0 0
....................................................................................................................................................................................................................GCACCGGAGACGGACTGCTTTGACTAG............ 27 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................................................................GGCACCGAAGACGGACTGCTTTGACTAG............ 28 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................GAAGACGGACTGCTTTGACTAGGG.......... 24 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................CGAAGACGGACTGCTTTGACTAGGG.......... 25 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................AGGCACCGAAGACGGACTGCTTTGAC............... 26 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................GGCACCGAAGACGGACTACTTTGACT.............. 26 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................................................................................AGGCACCGAAGACGGACTGCTTTGACTAG............ 29 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................GCACCGAAGACGGACTGCTTTGATT.............. 25 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................GGCACCGAAGTCGGACTGCTTTGACT.............. 26 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................GCACTGAAGACGGACTGCTTTGACT.............. 25 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................GGACTGCTTTGACTAGGGGTGAA..... 23 0 2 1.00 2 1 0 1 0 0 0
...................................................................................................................................................................................................................CGCACCGAAGACGAACTGCTTTGACT.............. 26 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................ACGGACTTCTTTGACTAGGGGTGAAG.... 26 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................................AGGCACCGAAGACGGACTTCTTTGA................ 25 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................................................................................................................CGAATTATTAACTTCGAGCTATATAG....................................... 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................ACTGCTTTGACTAGGGGTGAAGTAG. 25 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................CGAAGACGGGCTGCTTTGACT.............. 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................TAGACGGACTGCTTTGACTAGGGGTG....... 26 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................GACAGACTGCTTTGACTAGGGGTG....... 24 1 2 0.50 1 0 0 0 0 0 1
..........................................................AAGCCCCAGAATACGAAGAAAA........................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 1 0
..................................................................................................................................................................................................................................CTGCTTTGGGTAGGGGCGAAG.... 21 3 2 0.50 1 0 0 0 1 0 0
.............................................................................................................................................................................................................................ACGGACTGCTTTGACTAGGGGTGA...... 24 0 2 0.50 1 0 0 1 0 0 0
............................................................................................................................................................................................................................GACGGACTGCTTTGACTAGGGGTG....... 24 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................................................GCACCGATGACGGACTGCTTTGACTA............. 26 1 2 0.50 1 0 0 1 0 0 0
...................................................................................................................................................................................................................................TGCTTTGGCCAGGGGCGAAG.... 20 3 4 0.25 1 0 0 0 1 0 0
...................................................................................................................................CGGAATGTTGCGGGCTTCGGTTAAAAT............................................................................................. 27 0 5 0.20 1 1 0 0 0 0 0
............................................................................................................................TGTAAGACGGAATGTTGCGGGCTT....................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0
.........................................................................................................................................GTTGCGGGCTTCGGTTAAAATAAATG........................................................................................ 26 0 5 0.20 1 0 0 1 0 0 0
..................................................................................................................................ACGGAATGTTGCGGGCTTCGGTTAAAAT............................................................................................. 28 0 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................GTAAGACGGAATGTTGCGGGCTTCGGTT.................................................................................................. 28 0 5 0.20 1 0 0 1 0 0 0
........................................................................................................................................TGTTGCGGGCTTCGGTTAAAATAAAT......................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TGCTTTGGCTAGAGGTGAAG.... 20 2 6 0.17 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................CGCTTTGCCTAGGGGTGACG.... 20 3 8 0.13 1 0 0 0 1 0 0
............................................................................................................TCCGAAATCGACAAAGTGTAA.......................................................................................................................... 21 3 8 0.13 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:8969351-8969601 - dan_610 TATTATTTATTTTC---TGAGATTTATAACAT--------TTTTGATTAAAAATGCCGCGTTTTAATATTTTGGGGTCTTATCCCTCTTTTTTTTAATCAGAATTAATAAGTTCATTAGCAGCTTTAGCTGTTTTACATTCTGCCTTACAACGCCCGAAGCCAATTTTATTTACTTTAACAATGTCATTAAGTTTAAGCTTAATAATTGAAGCTCGATATATCCGTGGCTTCTGCCTGACGAAACTGATCCCCACTTCATCT
droBip1 scf7180000394861:5549-5741 - AGTAAATTTTA--T---TGGAATTTAAAAAATAATACCAGTCT----TAAAAAATAAATGCTTAAGAATTTTGGGGTCGTAGCCCTCTTTTTTTAGATCAGAATTTAATAAATCATTAGCTGCTTTAGCTGTCTTGCACTCTGCCTTACAACGCCCGTAGCCTATTTTAT-----TTTAATATATCTTTAAGTTTAAGCTTAAAAA-------------------------------------------------------T
droKik1 scf7180000302334:360330-360472 - TTTTGTATATTTTTTTCTAAAATTTA-------------------------------AAATTTTAATTTTTTAATATTTGATTATTTTTTTTTTTTATTTAAAATAAAAAATACATTTTCTTATTTT----------------------------------------------------------TTTTTCATTTA------------------------------AAATCTAAAATAAAACAACAAAATATAACCTTATTT
droFic1 scf7180000453257:7525-7574 - TATTATTTCTTTTT---TGAGATTTATAACAT--------TTT---------------------------------------------------------------------------------------------------------------------------------------------------------TGATTAAAA------------------------------------------------ATGCCGCGT
droEle1 scf7180000491238:913071-913148 + TTTGAATTTTT------TTAAATGT----------------------------------------------------CACTT-CTCTATTTTGTAAATT-GTATTAATAATTCTTTTTGACTCTTTAATAATTTTACA----------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777007:6010-6198 + ATTTTGTG----------GGGATTTGAAAAATTATGCCGGTTT----TGCAAATAAAATGTTTTAATATTTTGGGTTCGTACCCATATTTTTTAAAATTTGATTTTATTAAATCATTAGCTGCTTTCGCTGACCTGCATTCGGCTTTGCAGTGCCTGTAGCCAATTTTATTCACTTTTATTATGTCTTTTAATTTTATATTAA-----------------------------------------------------------
droBia1 scf7180000298495:621-780 + TT----------------------------------------------AAAAATGAAATGCTTAAGAATTTTAGGTTCGTAACCATTACTTTTAAGATTTGAGGACAGGATGCTATTAGCTGCCGTTGCTGACTTGCACTCAGCCTTGCAGCGCCCATAACCAATCTTATTTACTGAAATTATATCTTTAATATTTAATTTTA--------------------------------------------------------GCA
droTak1 scf7180000412336:6619-6778 - TT----------------------------------------------GAAAATGAAATGTTTTAGTATTTTGGGTTCGTACCCTTCATTTTTTAAATTCGAATTTACCAAGTCATTAGCTGCTTTCGCTGACCTGCACTCGGCTTTGCAGCGCCCGTAGCCAATTTTGTTCACTTTTACTATGTCTTTTAATTTAAGGTTAAAAA--------------------------------------------------------
droEug1 scf7180000409801:564754-564910 - TT----------------------------------------------GAAAATAAAATGTTTTAATATTTTGGGTTCGTACCCTTTATTTTTTAAATTAGAATTTACCAAATCATTAGCTGCTTTCGCTGACCTGCACTCGGCTTTGCAGCGCCCGTAGCCAATTTTGTTTACTTTTACTATGTCTTTCAATTTGAGGTTAA-----------------------------------------------------------
dm3 chr3R:9089495-9089542 - C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATATCCGTGGTTGCTCCCGGATGAGACGGATCCGCACTTCGTGT
droSim2 3r:12083572-12083619 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATATCCGTGGTTGCTCCCGGATGAGACGGATCCGCACTTCGTGT
droSec2 scaffold_0:12914903-12914950 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATATCCGTGGTTGCTCCCGGATGAGACGGATCCGCACTTCGTGT
droYak3 3R:13393457-13393504 - C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATATCCGTGGTTGCTCCCAGATGAAACGGATCCGCACTTTGTGT
droEre2 scaffold_4770:12560115-12560162 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATATCCCTGGTTGCTCCCGGATGAGACAGATCCGCACTTTGTGT
dp5 2:10999162-10999209 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATACCCATGGCTCCTGCCGGACGAGACGGATCCACATTTTGTCT
droPer2 scaffold_0:9467973-9468020 - C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATACCCATGGCTCCTGCCGGACGAGACGGATCCACATTTTGTCT
droWil2 scf2_1100000004961:853127-853350 + TTAC-------------TGGAATTTGGAACATTAAACCCGTTT----TGTATATAAAATGTTTCAGAATTTTCGGCTCATATCCTGTACCTTTTAATCAAGAGCTAACAAGTTCGTTTGCTGCTTTGGCTGTCTTGCATTCTGCTTTACACCGCCCATAACCTATTTTGCTCACTTTTAAAATATCTTTAATTTTTTGTTTAAAAA-------------------TAGTAGCACTGAGGTCCAATGGATTAATAGCTTTT--
droVir3 scaffold_12728:304428-304540 + TATTATTTGATTAT---TTAAACGCATTATAC--------TCTTAA-CGAATATATTGCGTTT--CTTTTT-TGAACCAT------------------------CAACACTTT--------------------------------CTTTAGAA--------------------------------------------------------------------TCCATATTTGATTCTAAA----------TTCGATTTTATAA
droMoj3 scaffold_6540:7948461-7948509 + TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATATCCGTGGATAATACTCGATGAAACTGATCCGCATTTTGTAT
droGri2 scaffold_14906:6311243-6311291 + TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTATATCCGTGGATAATACTCGATGAAACGGATCCACACTTTGTGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TATTATTTATTTTC---TGAGATTTATAACAT--------TTTTGATTAAAAATGCCGCGTTTTAATATTTTGGGGTCTTATCCCTCTTTTTTTTAATCAGAATTAATAAGTTCATTAGCAGCTTTAGCTGTTTTACATTCTGCCTTACAACGCCCGAAGCCAATTTTATTTACTTTAACAATGTCATTAAGTTTAAGCTTAATAATTGAAGCTCGATATATCCGTGGCTTCTGCCTGACGAAACTGATCCCCACTTCATCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................TACATTCTGCCTTACAACGCCCGAAGCC....................................................................................................2857.80398310000
......................................................................................................................................TACATTCTGCCTTACAACGCCCGAAGC.....................................................................................................2755.60288200000
......................................................................................................................................TACATTCTGCCTTACAACGCCCGAAG......................................................................................................2652.80144100000
......................................................................................................................................TACATTCTGCCTTACAACGCCCGAA.......................................................................................................2552.80142120000
.........................................................................................................................................................................................................................................GCCTGACGAAACTGATCCCCAC.......2220.501100000
.................................................................................................................................TGTTTTACATTCTGCCTTACAACGCCC..........................................................................................................2740.502110000
........................................................................................................................................................................................................................................TGCCTGACGAAACTGATCCCCA........2220.501100000
........................................................................................................................................................................................................................................TGCCTGACGAAACTGATCCCCAC.......2320.501100000
......................................................................................................................................TACATTCTGCCTTACAACGCCCGA........................................................................................................2450.402020000
.................................................................................................................................................TTACAACGCCCGAAGCCAATTTTATT...........................................................................................2650.402020000
........................................................................................................................................CATTCTGCCTTACAACGCCCGAAGCC....................................................................................................2650.402020000
..................................................................................................................................................TACAACGCCCGAAGCCAATTTTATT...........................................................................................2550.402110000
...................................................................................................................................TTTTACATTCTGCCTTACAACGCCCGA........................................................................................................2750.201010000
....................................................................................................................................TTTACATTCTGCCTTACAACGCCCGAA.......................................................................................................2750.201010000
...........................................................................................................................................TCTGCCTTACAACGCCCGAAG......................................................................................................2150.201010000
.....................................................................................................................................TTACATTCTGCCTTACAACGCCCGAAGC.....................................................................................................2850.201100000
.......................................................................................................................................ACATTCTGCCTTACAACGCCCGAAGCC....................................................................................................2750.201010000
.....................................................................................................................................TTACATTCTGCCTTACAACGCCCGAA.......................................................................................................2650.201010000
............................................................................................................................................CTGCCTTACAACGCCCGAAGCC....................................................................................................2250.201010000
.....................................................................................................................................TTACATTCTGCCTTACAACGCC...........................................................................................................2250.201010000
.......................................................................................................................................ACATTCTGCCTTACAACGCCC..........................................................................................................2150.201010000
......................................................................................................................................TACATTCTGCCTTACAACGCC...........................................................................................................2150.201010000
....................................................................................................................................TTTACATTCTGCCTTACAACGCCCGAAT......................................................................................................2850.201010000
....................................................................................................................................TTTACATTCTGCCTTACAACGCCCGAAG......................................................................................................2850.201100000
......................................................................................................................................TACATTCTGCCTTACAACGCCCGAAGT.....................................................................................................2750.201010000
......................................................................................................................................TACATTCTGCCTTACAACGCCCGAAGCCA...................................................................................................2950.201100000
...................................................................................................................................TTTTACATTCTGCCTTACAACGCCC..........................................................................................................2550.201010000
.................................................................................................................................................TTACAACGCCCGAAGCCAATTTTAT............................................................................................2550.201100000
......................................................................................................................................TACATTCTGCCTTACAACGCCCGAAGCT....................................................................................................2850.201010000
..................................................................................................................................................TACAACGCCCGAAGCCAATTTTATTTAC........................................................................................2850.201010000
.............C---TGAGATTTATAACAT--------TTTTGATTAA....................................................................................................................................................................................................................2670.141100000
....................GATTTATAACAT--------TTTTGAT.......................................................................................................................................................................................................................1970.141010000
droBip1
AGTAAATTTTA--T---TGGAATTTAAAAAATAATACCAGTCT----TAAAAAATAAATGCTTAAGAATTTTGGGGTCGTAGCCCTCTTTTTTTAGATCAGAATTTAATAAATCATTAGCTGCTTTAGCTGTCTTGCACTCTGCCTTACAACGCCCGTAGCCTATTTTAT-----TTTAATATATCTTTAAGTTTAAGCTTAAAAA-------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTGTATATTTTTTTCTAAAATTTA-------------------------------AAATTTTAATTTTTTAATATTTGATTATTTTTTTTTTTTATTTAAAATAAAAAATACATTTTCTTATTTT----------------------------------------------------------TTTTTCATTTA------------------------------AAATCTAAAATAAAACAACAAAATATAACCTTATTTSizeHit CountTotal NormTotal
No Reads
droFic1
TATTATTTCTTTTT---TGAGATTTATAACAT--------TTT---------------------------------------------------------------------------------------------------------------------------------------------------------TGATTAAAA------------------------------------------------ATGCCGCGTSizeHit CountTotal NormTotal
No Reads
droEle1
TTTGAATTTTT------TTAAATGT----------------------------------------------------CACTT-CTCTATTTTGTAAATT-GTATTAATAATTCTTTTTGACTCTTTAATAATTTTACA----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATTTTGTG----------GGGATTTGAAAAATTATGCCGGTTT----TGCAAATAAAATGTTTTAATATTTTGGGTTCGTACCCATATTTTTTAAAATTTGATTTTATTAAATCATTAGCTGCTTTCGCTGACCTGCATTCGGCTTTGCAGTGCCTGTAGCCAATTTTATTCACTTTTATTATGTCTTTTAATTTTATATTAA-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TT----------------------------------------------AAAAATGAAATGCTTAAGAATTTTAGGTTCGTAACCATTACTTTTAAGATTTGAGGACAGGATGCTATTAGCTGCCGTTGCTGACTTGCACTCAGCCTTGCAGCGCCCATAACCAATCTTATTTACTGAAATTATATCTTTAATATTTAATTTTA--------------------------------------------------------GCASizeHit CountTotal NormTotal
No Reads
droTak1
TT----------------------------------------------GAAAATGAAATGTTTTAGTATTTTGGGTTCGTACCCTTCATTTTTTAAATTCGAATTTACCAAGTCATTAGCTGCTTTCGCTGACCTGCACTCGGCTTTGCAGCGCCCGTAGCCAATTTTGTTCACTTTTACTATGTCTTTTAATTTAAGGTTAAAAA--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TT----------------------------------------------GAAAATAAAATGTTTTAATATTTTGGGTTCGTACCCTTTATTTTTTAAATTAGAATTTACCAAATCATTAGCTGCTTTCGCTGACCTGCACTCGGCTTTGCAGCGCCCGTAGCCAATTTTGTTTACTTTTACTATGTCTTTCAATTTGAGGTTAA-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATATCCGTGGTTGCTCCCGGATGAGACGGATCCGCACTTCGTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................GGTTGCTCCCGGATGAGACGGAT.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATATCCGTGGTTGCTCCCGGATGAGACGGATCCGCACTTCGTGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................ATGAGACGGATCCGCACT......1811.00101000000000000000
droSec2
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATATCCGTGGTTGCTCCCGGATGAGACGGATCCGCACTTCGTGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATATCCGTGGTTGCTCCCAGATGAAACGGATCCGCACTTTGTGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATATCCCTGGTTGCTCCCGGATGAGACAGATCCGCACTTTGTGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATACCCATGGCTCCTGCCGGACGAGACGGATCCACATTTTGTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................TGGCTCCTGCCGGACGAGACG................2112.0020000000200
droPer2
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATACCCATGGCTCCTGCCGGACGAGACGGATCCACATTTTGTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTAC-------------TGGAATTTGGAACATTAAACCCGTTT----TGTATATAAAATGTTTCAGAATTTTCGGCTCATATCCTGTACCTTTTAATCAAGAGCTAACAAGTTCGTTTGCTGCTTTGGCTGTCTTGCATTCTGCTTTACACCGCCCATAACCTATTTTGCTCACTTTTAAAATATCTTTAATTTTTTGTTTAAAAA-------------------TAGTAGCACTGAGGTCCAATGGATTAATAGCTTTT--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................TAGTAGCACTGAGGTCCAATGGAT.............24611.1767040621
......................................................................................................................................TGCATTCTGCTTTACACCGCCCATAACC....................................................................................................2847.0028028000
.....................................................................................................................TGCTGCTTTGGCTGTCTTGCATTCTG.......................................................................................................................2664.6728025030
..........................................................................................................................................................................................................................................TGAGGTCCAATGGATTAATAGCTTT...2554.6023050171
.................TGGAATTTGGAACATTAAACCCGTTT----.......................................................................................................................................................................................................................2663.3320060140
........................................................................................................................TGCTTTGGCTGTCTTGCATTCTGCTT....................................................................................................................2662.8317015020
..........................................................................................................................................................................................................................................TGAGGTCCAATGGATTAATAGCTT....2452.8014000140
.TAC-------------TGGAATTTGGAACATTAAACCCG..............................................................................................................................................................................................................................2642.7511010010
.....................................................................................................................TGCTGCTTTGGCTGTCTTGCATTCTGC......................................................................................................................2762.5015015000
...............................................................................................................TTCGTTTGCTGCTTTGGCTGTCTTG..............................................................................................................................2572.2916014020
...................................................................................................................................TCTTGCATTCTGCTTTACACCGCCCA.........................................................................................................2642.25908010
.TAC-------------TGGAATTTGGAACATTAAACCCGTT............................................................................................................................................................................................................................2842.00812050
...............................................................................TATCCTGTACCTTTTAATCAAGAGC..............................................................................................................................................................2512.00201010
................................................................................................................TCGTTTGCTGCTTTGGCTGTCTTG..............................................................................................................................2471.8613012010
........................................................................................................TAACAAGTTCGTTTGCTGCTTTGGCTG...................................................................................................................................2761.831108030
........................................................................................................TAACAAGTTCGTTTGCTGCTTTGGC.....................................................................................................................................2561.8311010010
.......................................................................................................................................................................................................................................CACTGAGGTCCAATGGATTAATAGCTT....2751.80901080
.............................................................TTCAGAATTTTCGGCTCATATCCTG................................................................................................................................................................................2581.7514013010
.......................................................................................................................................................................................................................................CACTGAGGTCCAATGGATTAATAGC......2561.671002071
................................................................................................................TCGTTTGCTGCTTTGGCTGTCTTGC.............................................................................................................................2571.571107040
..........................................................TGTTTCAGAATTTTCGGCTCATATCC..................................................................................................................................................................................2681.501206060
........................................................................................................................TGCTTTGGCTGTCTTGCATTCTGC......................................................................................................................2461.50906030
........................................................................................................................................................................................................TAAAAA-------------------TAGTAGCACTGAGGTCCAA..................2551.40702050
..............................................................TCAGAATTTTCGGCTCATATCCTG................................................................................................................................................................................2481.3811010010
.................TGGAATTTGGAACATTAAACCCGTT............................................................................................................................................................................................................................2561.33802060
.................................................................................................................................................................................................................................TAGTAGCACTGAGGTCCAATGGA..............2361.33800080
.........................................................................................................AACAAGTTCGTTTGCTGCTTTGGCTG...................................................................................................................................2661.33807010
........................................................................................................................TGCTTTGGCTGTCTTGCATTCTGCT.....................................................................................................................2561.33817000
.................................................TATATAAAATGTTTCAGAATTTTCGGC..........................................................................................................................................................................................2771.29904050
.............................................................................................................................TGGCTGTCTTGCATTCTGCTTTACAC...............................................................................................................2641.25514000
.TAC-------------TGGAATTTGGAACATTAAACCCGT.............................................................................................................................................................................................................................2741.25503020
.............................................................................................................................................TGCTTTACACCGCCCATAACCTATTT...............................................................................................2641.25505000
......................................................................................................................................TGCATTCTGCTTTACACCGCCCATAAC.....................................................................................................2741.25505000
............................................................................................................................................................................................................AA-------------------TAGTAGCACTGAGGTCCAATGGAT.............2651.20601050
.................................................................................................................................................................................................TTTTGTTTAAAAA-------------------TAGTAGCACTGAGG.......................2761.17702050
........................................................................................................................TGCTTTGGCTGTCTTGCATTCTGCTTT...................................................................................................................2761.17706010
................................................................................................................................................TTTACACCGCCCATAACCTATTTTGCT...........................................................................................2731.00301020
..........................................................................................................................................................................................................................................TGAGGTCCAATGGATTAATAGCTTTT--2651.00501040
..........................................................TGTTTCAGAATTTTCGGCTCATATCCTG................................................................................................................................................................................2881.00808000
...............................................................................TATCCTGTACCTTTTAATCAAGAGCT.............................................................................................................................................................2611.00101000
..................................................................................................................................................................TATTTTGCTCACTTTTAAAATATCTT..........................................................................2631.00303000
..........................................................................................................................................TTCTGCTTTACACCGCCCATAACC....................................................................................................2441.00404000
.................................................................................................................................................TTACACCGCCCATAACCTATTTTGCT...........................................................................................2631.00301020
.......................................................................................................................................................................................................................................CACTGAGGTCCAATGGATTAATAGCT.....2660.83500050
..................................................................................................................................................................................................TTTGTTTAAAAA-------------------TAGTAGCACTGAGG.......................2660.83500050
.....................................................................................................................TGCTGCTTTGGCTGTCTTGCATTC.........................................................................................................................2460.83505000
......................................................................................................................GCTGCTTTGGCTGTCTTGCATTCTG.......................................................................................................................2560.83505000
....................................................................................................................................................................................................TGTTTAAAAA-------------------TAGTAGCACTGAGG.......................2460.83500050
TTAC-------------TGGAATTTGGAACATTAAACCCG..............................................................................................................................................................................................................................2740.75303000
.......................................................................................................................................GCATTCTGCTTTACACCGCCCATAACC....................................................................................................2740.75303000
...................................................TATAAAATGTTTCAGAATTTTCGGCTCA.......................................................................................................................................................................................2870.71504010
.....................................................................................................................TGCTGCTTTGGCTGTCTTGCATT..........................................................................................................................2370.71505000
.................................................TATATAAAATGTTTCAGAATTTTCGGCT.........................................................................................................................................................................................2870.71503020
...................................................................................................................................................................................................TTGTTTAAAAA-------------------TAGTAGCACTGAGG.......................2560.67400040
..................................................................................................................................................TACACCGCCCATAACCTATTTTGCTCAC........................................................................................2830.67201010
....................................................................................................................................................................................................................................TAGCACTGAGGTCCAATGGATTAAT.........2560.67400040
.................TGGAATTTGGAACATTAAACCCGTTT----TG.....................................................................................................................................................................................................................2860.67404000
........................................................................................................TAACAAGTTCGTTTGCTGCTTTGGCT....................................................................................................................................2660.67403010
.................................................................................................................................................................................................................................TAGTAGCACTGAGGTCCAATGGATT............2560.67402020
.............................................................................................................................................................TAACCTATTTTGCTCACTTTTAAAA................................................................................2550.60303000
.......................................................................................................................................................................................................................................CACTGAGGTCCAATGGATTAATAGCTTT...2850.60301020
...............................................TGTATATAAAATGTTTCAGAATTTTCGGC..........................................................................................................................................................................................2970.57404000
...................................................TATAAAATGTTTCAGAATTTTCGGCT.........................................................................................................................................................................................2670.57402020
.................................................................................................................................TGTCTTGCATTCTGCTTTACACCGCCC..........................................................................................................2740.50202000
.............................................................................................................................................TGCTTTACACCGCCCATAACC....................................................................................................2140.50202000
...........................................................................................................................TTTGGCTGTCTTGCATTCTGCTTTACAC...............................................................................................................2840.50202000
......................................................................................................................................TGCATTCTGCTTTACACCGCCCA.........................................................................................................2340.50202000
..................................................................................................................................GTCTTGCATTCTGCTTTACACCGCCCA.........................................................................................................2740.50202000
........................................................................................................TAACAAGTTCGTTTGCTGCTTTGG......................................................................................................................................2460.50303000
.......................................................................................................................................................................TGCTCACTTTTAAAATATCTTTAATT.....................................................................2640.50202000
...........................................................................................................................................TCTGCTTTACACCGCCCATAACC....................................................................................................2340.50211000
...................................................................................................................................TCTTGCATTCTGCTTTACACCGCCC..........................................................................................................2540.50202000
.....................................................................................................................TGCTGCTTTGGCTGTCTTGCATTCT........................................................................................................................2560.50301020
.TAC-------------TGGAATTTGGAACATTAAACCCGTTT----.......................................................................................................................................................................................................................2940.50202000
....................................................................................................................................................................................................................................TAGCACTGAGGTCCAATGGATTAA..........2460.50302010
....................................................................................................................................................................................................................................TAGCACTGAGGTCCAATGGATTAATAG.......2760.50300030
.......................................................................................................................................................................TGCTCACTTTTAAAATATCTTTAATTTTT..................................................................2940.50202000
.....................................................................TTTCGGCTCATATCCTGTACCTTT.........................................................................................................................................................................2480.50403010
......................................................................................................................................TGCATTCTGCTTTACACCGCCCATA.......................................................................................................2540.50202000
..............................................................................................................................GGCTGTCTTGCATTCTGCTTTACAC...............................................................................................................2540.50202000
........................................................................................................................TGCTTTGGCTGTCTTGCATTCTGCTTTA..................................................................................................................2840.50201010
................................................................................................................TCGTTTGCTGCTTTGGCTGTCTTGCA............................................................................................................................2670.43303000
.................................................TATATAAAATGTTTCAGAATTTTCGG...........................................................................................................................................................................................2670.43301020
...................................................TATAAAATGTTTCAGAATTTTCGGC..........................................................................................................................................................................................2570.43301020
..........................................................................................................................................................................................................AAAA-------------------TAGTAGCACTGAGGTCCAATGGA..............2750.40200020
............................................................................................................................................................................................................AA-------------------TAGTAGCACTGAGGTCCAATGGA..............2550.40200020
............................................................................................................................................................ATAACCTATTTTGCTCACTTTTAAAA................................................................................2650.40200020
............................................................................................................................................................................................................AA-------------------TAGTAGCACTGAGGTCCAATGGATT............2750.40200020
.............................................................................................................................................................TAACCTATTTTGCTCACTTT.....................................................................................2050.40202000
......................................................................TTCGGCTCATATCCTGTACCTTTTAATC....................................................................................................................................................................2880.38303000
.....................................................TAAAATGTTTCAGAATTTTCGGCTCA.......................................................................................................................................................................................2680.38302010
.................................................................................................................................................................CTATTTTGCTCACTTTTAAAATATCT...........................................................................2630.33101000
.........................................................................................................AACAAGTTCGTTTGCTGCTTTGG......................................................................................................................................2360.33201010
............................................................................................................................................................................................TAATTTTTTGTTTAAAAA-------------------TAGTAGCAC............................2760.33202000
.....................................................................................................................................................................................................................................AGCACTGAGGTCCAATGGATTAATAGC......2760.33200020
.................................................................................................................................................................................................................................TAGTAGCACTGAGGTCCAATGGATTAA..........2760.33201010
....................................................................................................................................................................................................TGTTTAAAAA-------------------TAGTAGCACTGAGGTC.....................2660.33200020
......................................................................................................................GCTGCTTTGGCTGTCTTGCATTCTGC......................................................................................................................2660.33202000
............................................................................................................AAGTTCGTTTGCTGCTTTGGCTG...................................................................................................................................2360.33200020
....................................................................................................................................................................................................TGTTTAAAAA-------------------TAGTAGCACTGAGGT......................2560.33202000
.....................................................................................................................TGCTGCTTTGGCTGTCTTGCATTCTGCTT....................................................................................................................2960.33202000
....................................................................................................................TTGCTGCTTTGGCTGTCTTGCATTC.........................................................................................................................2560.33201010
...............................................................................................................TTCGTTTGCTGCTTTGGCTGTCTTGC.............................................................................................................................2670.29202000
.................................................................................................................CGTTTGCTGCTTTGGCTGTCTTG..............................................................................................................................2370.29202000
......................TTTGGAACATTAAACCCGTTT----.......................................................................................................................................................................................................................2170.29202000
...................................................................................................................TTTGCTGCTTTGGCTGTCTTGCAT...........................................................................................................................2470.29202000
...................................................................................................................TTTGCTGCTTTGGCTGTCTTGCATT..........................................................................................................................2570.29202000
...................................................TATAAAATGTTTCAGAATTTTCGGCTC........................................................................................................................................................................................2770.29220000
.........................................................................................................................GCTTTGGCTGTCTTGCATTCTGCTTTA..................................................................................................................2740.25101000
.............................................................................................................................TGGCTGTCTTGCATTCTGCTTTACA................................................................................................................2540.25101000
.................................................................................................................................................TTACACCGCCCATAACCTATTTT..............................................................................................2340.25101000
.................................................................................................................................................TTACACCGCCCATAACCTATTTTGC............................................................................................2540.25101000
.............................................................................................................................................TGCTTTACACCGCCCATAACCA...................................................................................................2240.25101000
...........................................................................................................................................TCTGCTTTACACCGCCCATAACCTATTT...............................................................................................2840.25101000
.............................................................................................................................................TGCTTTACACCGCCCATAACCTATTTTG.............................................................................................2840.25101000
.................................................................................................................................TGTCTTGCATTCTGCTTTACAC...............................................................................................................2240.25101000
.................................................................................................................................TGTCTTGCATTCTGCTTTACACCGCCCA.........................................................................................................2840.25101000
..AC-------------TGGAATTTGGAACATTAAACCCGTT............................................................................................................................................................................................................................2740.25101000
...........................................................................................................................................TCTGCTTTACACCGCCCATAACCTA..................................................................................................2540.25101000
.....................................................TAAAATGTTTCAGAATTTTCGGCTCATA.....................................................................................................................................................................................2880.25202000
.TAC-------------TGGAATTTGGAACATTAAACC................................................................................................................................................................................................................................2440.25101000
............................................................................................................................................CTGCTTTACACCGCCCATAACC....................................................................................................2240.25101000
.......................................................................................................................................GCATTCTGCTTTACACCGCCCAT........................................................................................................2340.25101000
.................................................................................................................................TGTCTTGCATTCTGCTTTACACCGC............................................................................................................2540.25101000
.....................................................................................................................................................................TTTGCTCACTTTTAAAATATCTTTAATT.....................................................................2840.25101000
..............................................................................................................................GGCTGTCTTGCATTCTGCTTTACACC..............................................................................................................2640.25101000
........................................................................................................................................CATTCTGCTTTACACCGCCCATAAC.....................................................................................................2540.25101000
.............................................................................................................................................TGCTTTACACCGCCCATAACCTATTTTGC............................................................................................2940.25101000
..............................................................TCAGAATTTTCGGCTCATATCCTGT...............................................................................................................................................................................2580.25200020
........................................................................................................................................CATTCTGCTTTACACCGCCCATAACC....................................................................................................2640.25101000
..............................................................TCAGAATTTTCGGCTCATATCCTGTACC............................................................................................................................................................................2880.25202000
....................................................................TTTTCGGCTCATATCCTGTACCTTT.........................................................................................................................................................................2580.25201010
......................................................................................................................................................................TTGCTCACTTTTAAAATATCTTTAATT.....................................................................2740.25101000
............................................................................................................................TTGGCTGTCTTGCATTCTGCTTTACA................................................................................................................2640.25101000
...............................................................CAGAATTTTCGGCTCATATCCTGTACCT...........................................................................................................................................................................2880.25201010
.............................................................................................................................................TGCTTTACACCGCCCATAACCTATT................................................................................................2540.25101000
..........................................................................................................................................TTCTGCTTTACACCGCCCATAACCTAT.................................................................................................2740.25100010
......................................................................................................................................TGCATTCTGCTTTACACCGCCCATAACCA...................................................................................................2940.25101000
.......................................................................................................................................GCATTCTGCTTTACACCGCCCATA.......................................................................................................2440.25101000
....................................................................................................................................CTTGCATTCTGCTTTACACCGCCCA.........................................................................................................2540.25101000
........................................................................................................................................................................GCTCACTTTTAAAATATCTTTAATT.....................................................................2540.25101000
....................................................................................................................................CTTGCATTCTGCTTTACACCGCC...........................................................................................................2340.25101000
..AC-------------TGGAATTTGGAACATTAAACCCG..............................................................................................................................................................................................................................2540.25101000
.TAC-------------TGGAATTTGGAACATTAAAC.................................................................................................................................................................................................................................2340.25110000
...............................................................................................................................................CTTTACACCGCCCATAACC....................................................................................................1940.25101000
..............................................................TCAGAATTTTCGGCTCATATCCTGTACCT...........................................................................................................................................................................2980.25202000
.....................................................TAAAATGTTTCAGAATTTTCGGCT.........................................................................................................................................................................................2480.25201010
..........................................................................................................................................TTCTGCTTTACACCGCCCATAACCTATT................................................................................................2840.25101000
......................................................................................................................................TGCATTCTGCTTTACACCGCCCATAA......................................................................................................2640.25101000
................................................................................................................................................TTTACACCGCCCATAACCTATTTTGC............................................................................................2640.25101000
....................................................................................................................................................CACCGCCCATAACCTATTTTGCTCACTTT.....................................................................................2950.20101000
.......................................................................................................................................................................................................TTAAAAA-------------------TAGTAGCACTGAGGTCCAA..................2650.20100010
............................................................................................................................................................................................................AA-------------------TAGTAGCACTGAGGTCCAATGG...............2450.20100010
...........................................................................................................................................................................................................AAA-------------------TAGTAGCACTGAGGTCCAATGGAT.............2750.20100010
...........................................................................................................................................................CATAACCTATTTTGCTCACTTTTAAAAT...............................................................................2850.20101000
..............................................................................................................................................................AACCTATTTTGCTCACTTTTAAAA................................................................................2450.20101000
.............................................................................................................................TGGCTGTCTTGCATTCTGCTTTACACA..............................................................................................................2750.20101000
...................................................................................................................................................................................................TTGTTTAAAAA-------------------TAGTAGCACTGAGGT......................2660.17101000
.................................................................................................................................................................................................................................TAGTAGCACTGAGGTCCAATGGATTG...........2660.17100010
....................................................................................................................................................................................................................................TAGCACTGAGGTCCAATGGATTA...........2360.17101000
.......................................................................................................................CTGCTTTGGCTGTCTTGCATTC.........................................................................................................................2260.17101000
....................................................................................................................................................................................................TGTTTAAAAA-------------------TAGTAGCACTGAGGTCCA...................2860.17100010
......................................................................................................GCTAACAAGTTCGTTTGCTGCTTTGGC.....................................................................................................................................2760.17101000
....................................................................................................................................................................................................................................TAGCACTGAGGTCCAATGGATTAATAGC......2860.17101000
.................................................................................................................................................................................................................................TAGTAGCACTGAGGTCCAA..................1960.17100010
.......................................................................................................CTAACAAGTTCGTTTGCTGCTTTGGC.....................................................................................................................................2660.17101000
.....................................................................................................................................................................................................................................AGCACTGAGGTCCAATGGATTAATAGCT.....2860.17101000
....................................................................................................................................................................................................TGTTTAAAAA-------------------TAGTAGCACTGAGGTCC....................2760.17101000
........................................................................................................................TGCTTTGGCTGTCTTGCATTCTG.......................................................................................................................2360.17101000
.........................................................................................................................GCTTTGGCTGTCTTGCATTCTGCT.....................................................................................................................2460.17101000
.......................................................................................................................CTGCTTTGGCTGTCTTGCATTCTG.......................................................................................................................2460.17101000
...............................TTAAACCCGTTT----TGTATATAAAATG..........................................................................................................................................................................................................2560.17101000
..........................................................................................................................................................................................................................................TGAGGTCCAATGGATTAATAGC......2260.17100010
........................................................................................................................TGCTTTGGCTGTCTTGCATTCTGCTTTT..................................................................................................................2860.17101000
...............................................................................................................................................................................................TTTTTTGTTTAAAAA-------------------TAGTAGCACTGAGG.......................2960.17101000
.....................................................................................................................TGCTGCTTTGGCTGTCTTGCATTCTGT......................................................................................................................2760.17100001
....................................................................................................................TTGCTGCTTTGGCTGTCTTGCATTCG........................................................................................................................2660.17101000
...............................................................................................................TTCGTTTGCTGCTTTGGCTGTCTTGCAT...........................................................................................................................2860.17101000
....................................................................................................................TTGCTGCTTTGGCTGTCTTGCATTCTG.......................................................................................................................2760.17101000
.................................................................................................................CGTTTGCTGCTTTGGCTGTCTTGCATA..........................................................................................................................2760.17101000
.........................................................................................................AACAAGTTCGTTTGCTGCTTTGGC.....................................................................................................................................2460.17101000
........................................................................................................TAACAAGTTCGTTTGCTGCTTTGGCTA...................................................................................................................................2760.17101000
....................................................................................................................................................................................................................................TAGCACTGAGGTCCAATGGATT............2260.17100010
......................................................................................................................................................................................................TTTAAAAA-------------------TAGTAGCACTG..........................1960.17100010
.....................................................................................................AGCTAACAAGTTCGTTTGCTGCTT.........................................................................................................................................2460.17101000
.....................................................................................................................TGCTGCTTTGGCTGTCTTGCATTCTGCCC....................................................................................................................2960.17101000
.........................................................................................................................GCTTTGGCTGTCTTGCATTCTGCTT....................................................................................................................2560.17101000
..................................................................................................................................................................................................TTTGTTTAAAAA-------------------TAGTAGCACTGAG........................2560.17100010
.................................................................................................................................................................................................................................TAGTAGCACTGAGGTCCAATGGATTAAA.........2860.17101000
.................................................................................................................................................................................................................................TAGTAGCACTGAGGTCCAATGGATTC...........2660.17101000
.....................................................................................................................TGCTGCTTTGGCTGTCTTGCATTCCC.......................................................................................................................2660.17101000
....................................................................................................................................................................................................................................TAGCACTGAGGTCCAATGGATTAATA........2660.17100010
....................................................................................................................................................................................................................................TAGCACTGAGGTCCAATGGATTAAA.........2560.17100010
...........................................................................................................CAAGTTCGTTTGCTGCTTTGGCTGTCT................................................................................................................................2760.17101000
....................................................................................................................TTGCTGCTTTGGCTGTCTTGCATTCT........................................................................................................................2660.17100010
......................................................................................................................................................................................................................................GCACTGAGGTCCAATGGATTAATAGC......2660.17101000
..........................................................................................................................................................................................................................................TGAGGTCCAATGGATTAATAGCT.....2360.17100010
....................................................................................................................TTGCTGCTTTGGCTGTCTTGCATTCTGCT.....................................................................................................................2960.17101000
.........................................................................................................................GCTTTGGCTGTCTTGCATTCT........................................................................................................................2160.17101000
................................................................................................................TCGTTTGCTGCTTTGGCTGTCTTTA.............................................................................................................................2570.14100010
...............................................TGTATATAAAATGTTTCAGAATTTT..............................................................................................................................................................................................2570.14100010
.......................TTGGAACATTAAACCCGTTT----CC.....................................................................................................................................................................................................................2270.14101000
..............................................................................................................GTTCGTTTGCTGCTTTGGCTGTCTT...............................................................................................................................2570.14100010
.................................................................................................................CGTTTGCTGCTTTGGCTGTCTTGCA............................................................................................................................2570.14101000
.............................................................................................................AGTTCGTTTGCTGCTTTGGCTGTCT................................................................................................................................2570.14101000
....................AATTTGGAACATTAAACCCGTTT----TG.....................................................................................................................................................................................................................2570.14100010
...............................................................................................................TTCGTTTGCTGCTTTGGCTGTCT................................................................................................................................2370.14101000
...............................................................................................................TTCGTTTGCTGCTTTGGCTGTCTTGT.............................................................................................................................2670.14101000
.........................................TT----TGTATATAAAATGTTTCAGAATT................................................................................................................................................................................................2570.14100010
.......................TTGGAACATTAAACCCGT.............................................................................................................................................................................................................................1870.14101000
...............................................................................................................TTCGTTTGCTGCTTTGGCTGTCTTGCA............................................................................................................................2770.14101000
................................................................................................................TCGTTTGCTGCTTTGGCTGTCTT...............................................................................................................................2370.14101000
.................................................................................................................CGTTTGCTGCTTTGGCTGTCTT...............................................................................................................................2270.14101000
.................................................................................................................CGTTTGCTGCTTTGGCTGTCTTGC.............................................................................................................................2470.14101000
.....................................................TAAAATGTTTCAGAATTTTCGGCTC........................................................................................................................................................................................2580.13100010
.....................................................................TTTCGGCTCATATCCTGTACCTT..........................................................................................................................................................................2380.13101000
.....................................................................TTTCGGCTCATATCCTGTACCTTTT........................................................................................................................................................................2580.13101000
..........................................................TGTTTCAGAATTTTCGGCTCATATC...................................................................................................................................................................................2580.13100010
....................................................ATAAAATGTTTCAGAATTTTCGGCTCA.......................................................................................................................................................................................2780.13100010
................................................................AGAATTTTCGGCTCATATCCTGTACC............................................................................................................................................................................2680.13101000
..............................................................TCAGAATTTTCGGCTCATATCC..................................................................................................................................................................................2280.13101000
................................................................AGAATTTTCGGCTCATATCCTGTACCTT..........................................................................................................................................................................2880.13101000
...............................................................CAGAATTTTCGGCTCATATCCTGT...............................................................................................................................................................................2480.13100010
.....................................................TAAAATGTTTCAGAATTTTCGGCTCAT......................................................................................................................................................................................2780.13101000
.....................................................................TTTCGGCTCATATCCTGTACCTTTTAATC....................................................................................................................................................................2980.13101000
..........................................................TGTTTCAGAATTTTCGGCTCAT......................................................................................................................................................................................2280.13101000
.............................................................TTCAGAATTTTCGGCTCATA.....................................................................................................................................................................................2080.13101000
..........................................................TGTTTCAGAATTTTCGGCTCATA.....................................................................................................................................................................................2380.13101000
...........................................................GTTTCAGAATTTTCGGCTCATATCCTG................................................................................................................................................................................2780.13101000
...................................................................ATTTTCGGCTCATATCCTGTACCT...........................................................................................................................................................................2480.13101000
....................................................................TTTTCGGCTCATATCCTGTACCTTTT........................................................................................................................................................................2680.13101000
.............................................................TTCAGAATTTTCGGCTCATATCC..................................................................................................................................................................................2380.13100010
...............................................................CAGAATTTTCGGCTCATATCCTGTACC............................................................................................................................................................................2780.13101000
...................................................................ATTTTCGGCTCATATCCTGTACCTT..........................................................................................................................................................................2580.13101000
.......................................................................TCGGCTCATATCCTGTACCTTT.........................................................................................................................................................................2280.13101000
.....................................................................................................................TGCTGCTTTGGCTGTCTTGC.............................................................................................................................2080.13101000
............................................................TTTCAGAATTTTCGGCTCATATCCTG................................................................................................................................................................................2680.13101000
.........................................................ATGTTTCAGAATTTTCGGCTCATATCCTG................................................................................................................................................................................2980.13101000
......................................................................TTCGGCTCATATCCTGTACCTTT.........................................................................................................................................................................2380.13101000
....................................................................TTTTCGGCTCATATCCTGTACCTTTA........................................................................................................................................................................2680.13101000
....................................................ATAAAATGTTTCAGAATTTTCGGC..........................................................................................................................................................................................2480.13101000
......................................................AAAATGTTTCAGAATTTTCGGCTCA.......................................................................................................................................................................................2580.13100010
.............................................................TTCAGAATTTTCGGCTCATATCCTGT...............................................................................................................................................................................2680.13101000
droVir3
TATTATTTGATTAT---TTAAACGCATTATAC--------TCTTAA-CGAATATATTGCGTTT--CTTTTT-TGAACCAT------------------------CAACACTTT--------------------------------CTTTAGAA--------------------------------------------------------------------TCCATATTTGATTCTAAA----------TTCGATTTTATAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATATCCGTGGATAATACTCGATGAAACTGATCCGCATTTTGTATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTATATCCGTGGATAATACTCGATGAAACGGATCCACACTTTGTGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:49 PM