dan_599

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCCTCTTGAGTCTCTGGCCGCCTGGCTCCGGGCAAACAATGCGGTAAAGTGGGTGTTGGGTGGTGGTCAGCTGGGCACCAACATGGGTAACTTCTGTCGGGTGTGCTTCTTTGGAGGAGTTACCTTGTGGTCACTGGTCACTGGTTTTTGGGGATATCTTGTATATAACTTACTCTTTTTGCTGGCTTTCCCGTGCTACAGCTAGCCGTCGTCCCATCCCTCGGTCCGGCCATTTCCATGGTGAGCTCCTC ************************************************.((((((.(((........))).)))))).....(((((((((((.(((((........))))))))))))))))(((((.(((.((...(((((....((((.((..(((....)))..))))))....)))))....)).)))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	M044 female body	V055 head	V105 male body	M058 embryo	V039 embryo
...............................................AGTGGGTGTTGGGTGGTGG.........................................................................................................................................................................................	19	0	2	0.50	1	1	0	0	0	0	0
.......................................................TTGGATGGTGGTCAGCTG..................................................................................................................................................................................	18	1	3	0.33	1	0	0	1	0	0	0
......................................................................................................GTTCTTCTTTGGTGGAGT...................................................................................................................................	18	2	9	0.33	3	0	0	0	3	0	0
................................................GTGGGTGTTGGGTGGTGG.........................................................................................................................................................................................	18	0	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................CCATTGCCATGGTGTGCTC...	19	2	9	0.33	3	1	0	0	0	2	0
.................................................................................................................GTGGGGTTACCTGGTGGTCAC.....................................................................................................................	21	3	3	0.33	1	1	0	0	0	0	0
.................................................TGGGTGTTGGGTGGTGGTC.......................................................................................................................................................................................	19	0	5	0.20	1	1	0	0	0	0	0
.......................GGCTCCGGGCGAACAAGG..................................................................................................................................................................................................................	18	2	5	0.20	1	0	0	1	0	0	0
................................................................................ACATGGATAACTTCTGTT.........................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	1
.....................................................................................................CGTTCTTCTTTGGTGGAGT...................................................................................................................................	19	3	20	0.10	2	0	2	0	0	0	0
............................................................................................................................................................................................................GCCGCCGTCACTTCCCTCGGT..........................	21	3	10	0.10	1	0	1	0	0	0	0
......................................................................................................GTTCTTCTTTGGTGGAGTGA.................................................................................................................................	20	3	10	0.10	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................CATTGCCATGGTGTGCTCC..	19	2	20	0.10	2	1	1	0	0	0	0
.........................................................GGGTGGTTGGGAGCTGGGCAC.............................................................................................................................................................................	21	3	11	0.09	1	0	0	0	0	1	0
...............................................AGGGGGTGTAGGGTGGGGGTC.......................................................................................................................................................................................	21	3	13	0.08	1	0	0	0	1	0	0
.................................................TGGGTGTTGGGTGGTGGGC.......................................................................................................................................................................................	19	1	14	0.07	1	1	0	0	0	0	0
...............................................AGTGGGTGTAGGGTGGTGTTG.......................................................................................................................................................................................	21	3	17	0.06	1	1	0	0	0	0	0
..................................................................................ATTGTTAACTTATGTCGGG......................................................................................................................................................	19	3	20	0.05	1	0	1	0	0	0	0

AGGAGAACTCAGAGACCGGCGGACCGAGGCCCGTTTGTTACGCCATTTCACCCACAACCCACCACCAGTCGACCCGTGGTTGTACCCATTGAAGACAGCCCACACGAAGAAACCTCCTCAATGGAACACCAGTGACCAGTGACCAAAAACCCCTATAGAACATATATTGAATGAGAAAAACGACCGAAAGGGCACGATGTCGATCGGCAGCAGGGTAGGGAGCCAGGCCGGTAAAGGTACCACTCGAGGAG ************************************************.((((((.(((........))).)))))).....(((((((((((.(((((........))))))))))))))))(((((.(((.((...(((((....((((.((..(((....)))..))))))....)))))....)).)))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V106 head	M058 embryo	V039 embryo	V105 male body	V055 head	M044 female body
....................................................................................................................................................................................................................................CGGTAACGGTACCACACGAGAA.	22	3	4	37.25	149	67	53	13	12	2	2
...................................................................................................................................................................................................................................CCGGTAACGGTACCACACGAGAA.	23	3	1	10.00	10	8	2	0	0	0	0
....................................................................................................................................................................................................................................CGGTAACGGTACCACACGAG...	20	2	5	9.40	47	10	34	1	0	0	2
.................................................................................................................CTCCACAATGGATCACCAG.......................................................................................................................	19	2	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................CGGTAACGGTACCACACGAGGA.	22	2	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................CGGTAACGGTACCACTCGA....	19	1	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................CCGGTAACGGTACCACACGAGA..	22	3	5	0.60	3	3	0	0	0	0	0
...................................................................................................................................................................................................................................CCGGTAACGGTACCACACGAG...	21	2	2	0.50	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................CGGTAACGGTACCACACGACGA.	22	3	2	0.50	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................GGTAACGGTACCACACGAGGA.	21	2	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................CGGTAACGGTACCACGCGAGAA.	22	3	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................CGGTAACGGTACCACACCAG...	20	3	11	0.27	3	0	3	0	0	0	0
.............................................................................................ACCAGCCCACACGAAGAAAACTC.......................................................................................................................................	23	3	4	0.25	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................CGGTAACGGTACCACACGAGTA.	22	3	4	0.25	1	0	0	0	1	0	0
....................................................................................................................................................................................................ATGTCGATCGGAAGGAAGGT...................................	20	3	5	0.20	1	0	0	0	0	1	0
.............................................................................................................................................................CAACGTATATTGAATGAGA...........................................................................	19	2	6	0.17	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................CGGTAACGGTACCACGCGAGA..	21	3	7	0.14	1	1	0	0	0	0	0
.................................................................................................................................................................ATATATTGACTGAGAAAAT.......................................................................	19	2	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................GGTAACGGTACCACACGAG...	19	2	9	0.11	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................CGGTAACGGTACCACACGAGC..	21	3	9	0.11	1	0	1	0	0	0	0
...........................................................................................AAGACCACCCACACGAGGAAA...........................................................................................................................................	21	3	10	0.10	1	0	1	0	0	0	0
..................................................................................TACTCATTGAAGACCGTCCA.....................................................................................................................................................	20	3	10	0.10	1	1	0	0	0	0	0
....................................................CATAAGCCACCACCGGTCGA...................................................................................................................................................................................	20	3	12	0.08	1	0	1	0	0	0	0
............................................................................................................................................................................................................CGGCTGCAGGGGAGGGA..............................	17	2	13	0.08	1	0	0	0	0	1	0
.................................................................................................................................................................ATATATTGACTGACAAAAA.......................................................................	19	2	13	0.08	1	0	0	0	0	1	0
.....................................................ACAACCCACCACCAATCAA...................................................................................................................................................................................	19	2	15	0.07	1	0	0	1	0	0	0
.............................................................................................................................................ACCAAAAGGCCCTATAGAAG..........................................................................................	20	3	15	0.07	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................ACGGTAACGGTACCACACGAG...	21	3	16	0.06	1	1	0	0	0	0	0
..............................................................................................ACCACCCACACGAAGAAA...........................................................................................................................................	18	2	18	0.06	1	0	1	0	0	0	0
...............................................................................................................................................................................................................CAGTACGATAGGGAGCCA..........................	18	3	20	0.05	1	0	0	0	0	1	0
................................................CACCCACAACCAAACACCAAT......................................................................................................................................................................................	21	3	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................GGAGCCAGGCCGAGAATG...............	18	3	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................................................GATGTCGATCGTGAGTAG......................................	18	3	20	0.05	1	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_12916:8129699-8129949 -	dan_599	TC------------------------------CT---CTTGAGTCT----CTGGCCGCCTGGCTCCGGG-CAAACAATGCGGTAAAGTGGG--------TGTTGGGTGGTGGTCAGCTGGGCACCAACATGGGTAACTT-CTGTCGGGTGTGCTTCTT-----------------------------------TGGAGG--------------------------------------------AGTTACCTTGTGGTCA---CTGGTCAC-TGGTTTTTGGGGATATCTTGTATATAACTTACTCT-TTTTGCTGGCTTTCCCGTGCTACAGCTAGCCGTCGTCCCATCCCTCGGTCCGGCCATTTCCATGGTGAGCTCCTC
droBip1	scf7180000396728:735232-735560 +		TCCTCATGGGCCTGGGTGAAGGTACCACCTTCCCCGCCCTCAGTGTCCTTCTGGCCGCCTGGGTGCCGGCCAACGAGCGCGGTAAACTCGGCGCTTTGGTGCTGGGTGGTGGCCAGGTGGGCACCATCATGGGTAACCTGCTGTCCGGTGTGCTGATTGATGCCTACAGCTGGCACTTTGTGTTCTACTTCTTCGGAGGCCTTGGAGTCGTCTGGTTCGTGATCTTCGTAAGTATT----------------------------TTTC--AAGGCATTTAGGGATACCGGGCGTAAC----ACCTTATCTTGCAGGCCTTCCTGTGCTACAGTGAGCCCACGACCCATCCCTTCATCAAACCA-------------------
droKik1	scf7180000302679:727677-727797 +		CT------------------------------------TTGAGTGTACTCCTGGCGGCCTGGGTGCCGGCAAACGAGCGTGGCAAGCTTGGTGCTCTAGTGCTGGGCGGCGGTCAGGTGGGCACCATTATGGGCAACCTGCTGTCGGGAGTGTTCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453936:138066-138184 -		CC------------------------------------TTGAGTGTCCTGCTGGCCGCCTGGGTTCCAGCCAATGAGCGTGGAAAGCTCGGTGCCTTGGTGCTGGGCGGAGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCTGGAGTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491028:3133370-3133672 -		CT------------------------------------CTGAGTGTCCTGCTGGCTGCCTGGGTGCCGGCCAACGAACGTGGAAAGCTTGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCGGGAGTGTTTATCGACGCCTACGGCTGGGAGTTTGTGTTCTACTTCTTTGGCGGTCTGGGTTGTATCTGGTTTGCCATCTTTGTGAGTATAGTTTCACACTTTCAATGGCATGAATATTATTA--AA---------------------TGCAATGTATCCTCTTTTGTAGGTCTTCCTCTGCTACAGCGATCCCGTTTCGCATCCCTTCATCAAGCC--------------------
droRho1	scf7180000761302:106685-106806 -		CC------------------------------------CTGAGTGTCCTGCTGGCTGCCTGGGTTCCGGCCAACGAACGTGGAAAGCTTGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACCATCATGGGAAACCTTTTGTCGGGAGTACTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302422:985616-985734 -		CC------------------------------------TTGAGTGTCCTGCTGGCTGCCTGGGTTCCGGCCAACGAACGAGGGAAGCTGGGTGCTCTGGTGCTGGGTGGCGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCGGGGGTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415863:199470-199591 -		CC------------------------------------TTGAGTGTCCTGCTGGCTGCCTGGGTGCCGGCCAACGAACGTGGAAAGCTGGGTGCTCTGGTGCTGGGCGGTGGTCAAGTGGGTACCATCATGGGCAACCTGTTGTCGGGAGTGTTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409122:422551-422858 +		CC-------------------------------CTGCTTTGAGTGTCCTACTGGCTGCTTGGGTACCGGCTAACGAACGTGGAAAGCTTGGAGCTCTGGTGCTGGGTGGCGGTCAAGTGGGTACCATCATGGGTAACCTGTTGTCGGGAGTATTTATTGATGCCTACGGCTGGGAGTTCGTGTTCTACTTCTTTGGCGGCCTGGGTGTAGTCTGGTTTGCCATCTTTGTAAGTCTAGATTTGCACCTTCTGTATAAGTACAAGTTTTT--AA---------------------TGCTCTTAATACTCTTTTTTAGGTCTTCCTCTGCTACAGCGATCCCACTTCCCATCCCTTCATCAAGCC--------------------
dm3	chr2L:12032387-12032505 +		CT------------------------------------TTGAGTGTCCTCCTAGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGCGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2l:11700138-11700442 +		CT------------------------------------TTGAGTGTCCTGCTAGCTGCTTGGGTACCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTTATAGATGCCTATGGCTGGGAGTTTGTCTTCTACTTCTTCGGCGGTCTGGGTGTTGTCTGGTTTGCCATCTTTGTAAGTATAGCTGAGCACTTAGCGCGTAGTCAAGACTCGTTATAA---------------------TCCAAACTATTCTTGCTCGTAGGTCTTCCTCTGCTACAGCGATCCCACGTCGCATCCCTTCATCAAGCC--------------------
droSec2	scaffold_16:227524-227642 +		CT------------------------------------TTGAGTGTCCTGCTAGCTGCTTGGGTACCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2L:8452447-8452567 +		TC------------------------------CCCGCTTTGAGTGTCCTGCTGGCTGCTTGGGTGCCGGCCAACGAGCGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCGGGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:13381392-13381510 -		CT------------------------------------TTGAGTGTCCTGCTGGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTGGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACTATCATGGGCAACATGTTGTCGGGAGTCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	4_group2:923809-923929 -		CA------------------------------------CTCAGTGTGCTCCTCGCTGCTTGGGTCCCCGCAAACGAACGTGGAAAATTGGGTGCTTTGGTCTTGGGTGGCGGACAGGTGGGAACTATCATGGGTAATATGTTATCGGGCGTCTTCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_8:2972166-2972286 +		CA------------------------------------CTCAGTGTGCTCCTCGCTGCTTGGGTCCCCGCAAACGAACGTGGAAAATTGGGTGCTTTGGTCTTGGGTGGCGGACAGGTGGGAACTATCATGGGTAATATGTTATCGGGCGTCTTCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004585:3998772-3998893 -		CT------------------------------------CTAAGTGTCTTGCTTGCTGCCTGGGTGCCAGCCAATGAACGTGGTAAATTGGGCGCCTTGGTCTTGGGAGGTGGTCAAGTGGGCACTATTATGGGTAATCTGTTATCTGGTGTATTTCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12963:13909754-13909901 +		GCCTC---------GGCGAAGGTACCACATTCCCGGCGTTGAGTGTTCTGCTTGCCGCCTGGGTGCCGGCTAATGAACGCGGCAAATTGGGCGCCTTGGTGCTGGGCGGCGGTCAGGTGGGCACCATTATGGGCAATATGCTGTCGGGGGTGTTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6500:5736348-5736474 -		TC------------------------------CCCGCATTGAGTGTCCTGCTGGCTGCCTGGGTGCCAGCCAACGAGCGTGGTAAACTGGGCGCCTTGGTCCTGGGCGGTGGTCAGGTGGGCACCATTTTGGGCAACCTGCTATCGGGCGTCTTCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15126:5981508-5981639 -		TC------------------------------CCAGCCTTGAGTGTCCTGCTAGCCGCATGGGTGCCGGCCAACGAACGTGGCAAACTGGGCGCTTTGGTTCTTGGCGGTGGCCAAGTGGGCACCATTATGGGTAATTTACTATCGGGCGTCTTCCTCGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TC------------------------------CT---CTTGAGTCT----CTGGCCGCCTGGCTCCGGG-CAAACAATGCGGTAAAGTGGG--------TGTTGGGTGGTGGTCAGCTGGGCACCAACATGGGTAACTT-CTGTCGGGTGTGCTTCTT-----------------------------------TGGAGG--------------------------------------------AGTTACCTTGTGGTCA---CTGGTCAC-TGGTTTTTGGGGATATCTTGTATATAACTTACTCT-TTTTGCTGGCTTTCCCGTGCTACAGCTAGCCGTCGTCCCATCCCTCGGTCCGGCCATTTCCATGGTGAGCTCCTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................AGTGGG--------TGTTGGGTGGTGG..............................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	1
......................................................................................GTGGG--------TGTTGGGTGGTGG..............................................................................................................................................................................................................................................................................	18	3	0.33	1	1	0	0	0	0	0
.......................................................................................TGGG--------TGTTGGGTGGTGGTC............................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	1

droBip1

TCCTCATGGGCCTGGGTGAAGGTACCACCTTCCCCGCCCTCAGTGTCCTTCTGGCCGCCTGGGTGCCGGCCAACGAGCGCGGTAAACTCGGCGCTTTGGTGCTGGGTGGTGGCCAGGTGGGCACCATCATGGGTAACCTGCTGTCCGGTGTGCTGATTGATGCCTACAGCTGGCACTTTGTGTTCTACTTCTTCGGAGGCCTTGGAGTCGTCTGGTTCGTGATCTTCGTAAGTATT----------------------------TTTC--AAGGCATTTAGGGATACCGGGCGTAAC----ACCTTATCTTGCAGGCCTTCCTGTGCTACAGTGAGCCCACGACCCATCCCTTCATCAAACCA-------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CT------------------------------------TTGAGTGTACTCCTGGCGGCCTGGGTGCCGGCAAACGAGCGTGGCAAGCTTGGTGCTCTAGTGCTGGGCGGCGGTCAGGTGGGCACCATTATGGGCAACCTGCTGTCGGGAGTGTTCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CC------------------------------------TTGAGTGTCCTGCTGGCCGCCTGGGTTCCAGCCAATGAGCGTGGAAAGCTCGGTGCCTTGGTGCTGGGCGGAGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCTGGAGTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CT------------------------------------CTGAGTGTCCTGCTGGCTGCCTGGGTGCCGGCCAACGAACGTGGAAAGCTTGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCGGGAGTGTTTATCGACGCCTACGGCTGGGAGTTTGTGTTCTACTTCTTTGGCGGTCTGGGTTGTATCTGGTTTGCCATCTTTGTGAGTATAGTTTCACACTTTCAATGGCATGAATATTATTA--AA---------------------TGCAATGTATCCTCTTTTGTAGGTCTTCCTCTGCTACAGCGATCCCGTTTCGCATCCCTTCATCAAGCC--------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CC------------------------------------CTGAGTGTCCTGCTGGCTGCCTGGGTTCCGGCCAACGAACGTGGAAAGCTTGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACCATCATGGGAAACCTTTTGTCGGGAGTACTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CC------------------------------------TTGAGTGTCCTGCTGGCTGCCTGGGTTCCGGCCAACGAACGAGGGAAGCTGGGTGCTCTGGTGCTGGGTGGCGGTCAAGTGGGCACCATCATGGGCAACCTGTTGTCGGGGGTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CC------------------------------------TTGAGTGTCCTGCTGGCTGCCTGGGTGCCGGCCAACGAACGTGGAAAGCTGGGTGCTCTGGTGCTGGGCGGTGGTCAAGTGGGTACCATCATGGGCAACCTGTTGTCGGGAGTGTTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CC-------------------------------CTGCTTTGAGTGTCCTACTGGCTGCTTGGGTACCGGCTAACGAACGTGGAAAGCTTGGAGCTCTGGTGCTGGGTGGCGGTCAAGTGGGTACCATCATGGGTAACCTGTTGTCGGGAGTATTTATTGATGCCTACGGCTGGGAGTTCGTGTTCTACTTCTTTGGCGGCCTGGGTGTAGTCTGGTTTGCCATCTTTGTAAGTCTAGATTTGCACCTTCTGTATAAGTACAAGTTTTT--AA---------------------TGCTCTTAATACTCTTTTTTAGGTCTTCCTCTGCTACAGCGATCCCACTTCCCATCCCTTCATCAAGCC--------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CT------------------------------------TTGAGTGTCCTCCTAGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGCGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................GCTCTGGTGCTGGGTGGT................................................................................................................................................................................................................................................................................	18	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GCTTGGGTTCCGGCCAACGAAC................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GGTCAAGTGGGTACTATCATGGGC........................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................AACGAACGTGGAAAGCTCGGTGCT...............................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TCGGTGCTCTGGTGCTGGGTGGCGGT.............................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GAACGTGGAAAGCTCGGTGCTCT.............................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CATGGGCAACCTGTTGTCTGGC.........................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................CGTGGAAAGCTCGGTGCTCTGGTG.........................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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CT------------------------------------TTGAGTGTCCTCCTAGCTGCTTGGGT..............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCTCTGGTGCTGGGTGGCGGTC............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................TGGGTGGCGGTCAAGTGGCAT...................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CT------------------------------------TTGAGTGTCCTGCTAGCTGCTTGGGTACCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTTATAGATGCCTATGGCTGGGAGTTTGTCTTCTACTTCTTCGGCGGTCTGGGTGTTGTCTGGTTTGCCATCTTTGTAAGTATAGCTGAGCACTTAGCGCGTAGTCAAGACTCGTTATAA---------------------TCCAAACTATTCTTGCTCGTAGGTCTTCCTCTGCTACAGCGATCCCACGTCGCATCCCTTCATCAAGCC--------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................ACGTGGAAAGCTCGGTGC................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TGGTGGTCAAGTGGGTACTATCATG...........................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................................................................................ATCATGGGCAACCTGTTGTCTGGC.........................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GGCCAACGAACGTGGAAAGCTCGGT..................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GTCCTGCTAGCTGCTTGGGTAC............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GGTCAAGTGGGTACTATCATGGGCAAC.....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ATCATGGGCAACCTGTTGTCTGGCGG.......................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCGTGTTTATAGA..............................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TCCAAACTATTCTTGCTCGTAG...................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................TGGGTGTTGTCTGGT......................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................GGCGGTCTGGGTGTTGTCTGGT......................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CTGGGTGTTGTCTGGTTTGCC.................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GGTCAAGTGGGTACTATCATGGGC........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TGGAAAGCTCGGTGCTCTGGTGCTG......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................TATCATGGGCAACCTGTTGTCTGGC.........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GCGTGTTTATAGATGCCTATGGCTGGG................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AGCGCGTAGTCAAGACTCGTT..................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TTCTACTTCTTCGGCGGTCTGGGTG...............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TTCCTCTGCTACAGCGATCCCACGTCGC....................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GGTGCTCTGGTGCTGGGT...................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CGGCCAACGAACGTGGAAAGCTCGGT..................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGCTGGGTGGTGGTCA...........................................................................................................................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CT------------------------------------TTGAGTGTCCTGCTAGCTGCTTGGGTACCGGCCAACGAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCTGGCGTGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................AACGAACGTGGAAAGCTCGGTG.................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...............................................CTGCTAGCTGCTTGGGTACCGGC........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..........................................................................GAACGTGGAAAGCTCGGTGCTCT.............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...............................................................................................CTGGTGCTGGGTGGTGGT.............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
......................................TTGAGTGTCCTGCTAGCTGCT...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.......................................TGAGTGTCCTGCTAGCTGCTTGGGTA.............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
............................................................................................GCTCTGGTGCTGGGTGGT................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

droYak3

TC------------------------------CCCGCTTTGAGTGTCCTGCTGGCTGCTTGGGTGCCGGCCAACGAGCGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGTACTATCATGGGCAACCTGTTGTCGGGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................GGTCAAGTGGGTACTATCATGGGC........................................................................................................................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	7	0	0	0	0
...............................................................................................................GTCAAGTGGGTACTATCATGGGC........................................................................................................................................................................................................................................................	23	1	5.00	5	0	2	0	0	0	0	3	0	0	0	0
..........................................GTGTCCTGCTGGCTGCTTGGGTGCC...........................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	3	0	0	0	1	0	0	0	0
.............................................................................................................................ATCATGGGCAACCTGTTGTCGGGA.........................................................................................................................................................................................................................................	24	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
..............................................................................GTGGAAAGCTCGGTGCTCTGGTGCTG......................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
...............................................................................................................................CATGGGCAACCTGTTGTCGGGA.........................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.........................................................................CGAGCGTGGAAAGCTCGGTGCTCTGGT..........................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
..........................................................................................................................ACTATCATGGGCAACCTGTTGTCGGG..........................................................................................................................................................................................................................................	26	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
............................................................................GCGTGGAAAGCTCGGTGCT...............................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.........................................................................CGAGCGTGGAAAGCTCGGTGCTCTGGTG.........................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................GGTCAAGTGGGTACTATC..............................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..........................................................................GAGCGTGGAAAGCTCGGTGCTCTG............................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................GTGGTCAAGTGGGTACTATCATGGGC........................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................AAGTGGGTACTATCATGGGC........................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................ATCATGGGCAACCTGTTGTCGG...........................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................CATGGGCAACCTGTTGTCGGG..........................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
...................................................................GGCCAACGAGCGTGGAAAGCT......................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................CAAGTGGGTACTATCATGGGC........................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................ACTATCATGGGCAACCTGTTGTCGGGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................GGTCAAGTGGGTACTATCATGGG.........................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
.............................................................................................................................ATCATGGGCAACCTGTTGTCGGG..........................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................GGTGCTCTGGTGCTGGGTGGT................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................GGGCAACCTGTTGTCGGG..........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................CTATCATGGGCAACCTGTTGTCGGGA.........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................GTGGTCAAGTGGGTACTATC..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................ACTATCATGGGCAACCTGTTGTCGGGA.........................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................CGGTGCTCTGGTGCTGGGTGGTGGT.............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................GAGCGTGGAAAGCTCGGTGCTCTGGTG.........................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GGTGGTCAAGTGGGTACT.................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................GCTCTGGTGCTGGGTGGTGGT.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................CTGGTGCTGGGTGGTGGTCAAGTGGGTA...................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................GGTGGTCAAGTGGGTACTATCATGGGC........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................CAACGAGCGTGGAAAGCTCGGTGC................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................GTGCTGGGTGGTGGTCAAGA........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................CGAGCGTGGAAAGCTCGGTGCTCTG............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................GGGCAACCTGTTGTCGGGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................AGCTCGGTGCTCTGGTGCTGGG....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................TGGGCAACCTGTTGTCGGGA.........................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................GTGTCCTGCTGGCTGCTTG.................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................GGTCAAGTGGGTACTATCATGGGCAACCT...................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................AGCTCGGTGCTCTGGTGCTGGGTGGTGGT.............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................ATGGGCAACCTGTTGTCGGG..........................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................CGAGCGTGGAAAGCTCGGTGCTCT.............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................GCTTTGAGTGTCCTGCTG.........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................GGTGCTGGGTGGTGGTCAAGTGGG.....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................GTACTATCATGGGCAACCTGTT................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................GTGGAAAGCTCGGTGCTCTG............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................ATCATGGGCAACCTGTTGTCG............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................CTATCATGGGCAACCTGTTGTCGG...........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................GTGGAAAGCTCGGTGCTCTGGTGCTGG.....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................ATGGGCAACCTGTTGTCGGGA.........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................CTTGGGTGCCGGCCAACGAGCG...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................TGGAAAGCTCGGTGCTCTGGTGCTGG.....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................GCCAACGAGCGTGGAAAGCTC.....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................TGGGTGGTGGTCAAGTGGG.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................ACTATCATGGGCAACCTGTT................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................CGTGGAAAGCTCGGTGCT...............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................CAAGTGGGTACTATCATGGG.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................CTGGTGCTGGGTGGTGGTC............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................TTGGGTGCCGGCCAACGAGCGTGGAAA.........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................TTGAGTGTCCTGCTGGCTGCTTGGGTGCC...........................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................CGGTGCTCTGGTGCTGGGTGGTGG..............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................GTACTATCATGGGCAACCTG..................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................GGTACTATCATGGGCAACCTGTTGTC.............................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................CTGGGTGGTGGTCAAGTGG......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................CAACGAGCGTGGAAAGCTCGGTGCTCTGGT..........................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................AACGAGCGTGGAAAGCTCGGTGCTCTGGT..........................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................CAACGAGCGTGGAAAGCTCGGTG.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................CTGGTGCTGGGTGGTGGTCAAGTGG......................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................GCTTTGAGTGTCCTGCTGGC.......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................GTGCTCTGGTGCTGGGTGGT................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................GGCCAACGAGCGTGGAAAGCTCGG...................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................TATCATGGGCAACCTGTTGTCGGG..........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................GAGCGTGGAAAGCTCGGTGCTCTGGTGCTG......................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................GCTCTGGTGCTGGGTGGTGGTC............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................TCTGGTGCTGGGTGGTGGTC............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................GTCCTGCTGGCTGCTTGGGTGCCGGC........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................GAGCGTGGAAAGCTCGGTGCTCTGGTGC........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................GCTTTGAGTGTCCTGCTGGCT......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................TGAGTGTCCTGCTGGCTGCTTGGG...............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................CGCTTTGAGTGTCCTGCTG.........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................CTGGGTGGTGGTCAAGTGGG.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................GGTACTATCATGGGCAACCT...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................GGTCAAGTGGGTACTATCATGGGT........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................TTGGGTGCCGGCCAACGAGCGTGGAA..........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................GGAAAGCTCGGTGCTCTGGTGCTG......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................GTGGAAAGCTCGGTGCTCT.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................TGGGTGGTGGTCAAGTGGGTACT.................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................GCGTGGAAAGCTCGGTGCTCTGGTGCTG......................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................TTGAGTGTCCTGCTGGCTGCT...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CT------------------------------------TTGAGTGTCCTGCTGGCTGCTTGGGTTCCGGCCAACGAACGTGGAAAGCTGGGTGCTCTGGTGCTGGGTGGTGGTCAAGTGGGCACTATCATGGGCAACATGTTGTCGGGAGTCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................GGTCAAGTGGGCACTATCATGGG.........................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	1	1	0
...................................................................GGCCAACGAACGTGGAAAGCTGG....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................GTCAAGTGGGCACTATCA.............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.......................................................................AACGAACGTGGAAAGCTGGGT..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................AAGTGGGCACTATCATGGGC........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.............................................TCCTGCTGGCTGCTTGGGTTCCGGC........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................CTGGTGCTGGGTGGTGGTC............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................GCTGGGTGGTGGTCAAGTGGCA....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
...........................................................................AACGTGGAAAGCTGGGTGCT...............................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................CAAGTGGGCACTATCATGGGCA.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................ATCATGGGCAACATGTTGTCGGG..........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................CTATCATGGGCAACATGTTGTCGGGA.........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................GTCAAGTGGGCACTATCATG...........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..............................................CCTGCTGGCTGCTTGGGTTCCGG.........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.......................................................................AACGAACGTGGAAAGCTGGGTGCT...............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................CTATCATGGGCAACATGTTGTCGGG..........................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...........................................................TGGGTTCCGGCCAACGAACGTGGAAAGC.......................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................ATGGGCAACATGTTGTCGGGA.........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................CAAGTGGGCACTATCATGGGC........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.........................................................................CGAACGTGGAAAGCTGGGTGCT...............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........................................................................GAACGTGGAAAGCTGGGTGCT...............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................AGTGGGCACTATCATGGGCAAC.....................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

dp5

CA------------------------------------CTCAGTGTGCTCCTCGCTGCTTGGGTCCCCGCAAACGAACGTGGAAAATTGGGTGCTTTGGTCTTGGGTGGCGGACAGGTGGGAACTATCATGGGTAATATGTTATCGGGCGTCTTCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................GACAGGTGGGAACTATCATGG..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TTGGGTGCTTTGGTCTTGGGTGGC................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................CTCCTCGCTGCTTGGGTCCCC..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................TTGGGTGGCGGACAGGTGGG.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................CTTGGGTGGCGGACAGGTGGGAACT.................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................GGACAGGTGGGAACTATCATGG..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................ACGAACGTGGAAAATTGGGT..................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................TGGGTGGCGGACAGGTGGGAA...................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................CTTGGGTGGCGGACAGGT........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................GTGTGCTCCTCGCTGCTTGGGT..............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..........................................................................GAACGTGGAAAATTGGGTGCTTTGGT..........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

CA------------------------------------CTCAGTGTGCTCCTCGCTGCTTGGGTCCCCGCAAACGAACGTGGAAAATTGGGTGCTTTGGTCTTGGGTGGCGGACAGGTGGGAACTATCATGGGTAATATGTTATCGGGCGTCTTCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................CGAACGTGGAAAATTGGGTGCTTTGGT..........................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
..........................................................................................GTGCTTTGGTCTTGGGTGGCGGAC............................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.............................................................................................CTTTGGTCTTGGGTGGCGG..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
............................................................................................GCTTTGGTCTTGGGTGGCGGAC............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................GGACAGGTGGGAACTATCATGGGT........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................CTCGCTGCTTGGGTCCCCGC........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................GAACGTGGAAAATTGGGT..................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
..............................................................................................................GGACAGGTGGGAACTATCATGG..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.................................................................................................................CAGGTGGGAACTATCATGGGTA.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droWil2

CT------------------------------------CTAAGTGTCTTGCTTGCTGCCTGGGTGCCAGCCAATGAACGTGGTAAATTGGGCGCCTTGGTCTTGGGAGGTGGTCAAGTGGGCACTATTATGGGTAATCTGTTATCTGGTGTATTTCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................GAACGTGGTAAATTGGGCGC................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	3	1	0
...................................................................................AAATTGGGCGCCTTGGTCTTGGGA...................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	3	0	0
...............................................................................................................GTCAAGTGGGCACTATTATGGGTAATCT...................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	2	1	0
............................................GTCTTGCTTGCTGCCTGGGTGCCAGCCA......................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0
....................................................................................AATTGGGCGCCTTGGTCTTGGGAGGT................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0
.......................................................................AATGAACGTGGTAAATTGGGC..................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
.....................................................................................ATTGGGCGCCTTGGTCTTGGGA...................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0
......................................................................CAATGAACGTGGTAAATT......................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................................................................................CTTGGTCTTGGGAGGTGGTC............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
........................................................................ATGAACGTGGTAAATTGGGCGCCTT.............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
..............................................................................................................GGTCAAGTGGGCACTATTATGGGTA.......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
..........................................................CTGGGTGCCAGCCAATGAACGT..............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................................GGTCTTGGGAGGTGGTCAAGTGGGC....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.........................................................................................GGCGCCTTGGTCTTGGGAGGT................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................................................................................................TGGTCTTGGGAGGTGGTCAAGT........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...........................................................................................................GGTGGTCAAGTGGGCACT.................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................CTATTATGGGTAATCTGTT................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
....................................................................................AATTGGGCGCCTTGGTCTTGGG....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.................................................................................GTAAATTGGGCGCCTTGGTC.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
......................................................................................................TGGGAGGTGGTCAAGTGGGCACT.................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...............................................................................................TTGGTCTTGGGAGGTGGTCAAGTG.......................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...................................................................................AAATTGGGCGCCTTGGTCTTGG.....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
......................................................................................TTGGGCGCCTTGGTCTTGGGAGGT................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
....................................................................................AATTGGGCGCCTTGGTCTTGGGA...................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.................................................................................GTAAATTGGGCGCCTTGGTCTTGGGA...................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
..................................................................................................GTCTTGGGAGGTGGTCAAGT........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..............................................CTTGCTTGCTGCCTGGGT..............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................................................................................................GGTCAAGTGGGCACTATTATGGGTAAT.....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
........................................AAGTGTCTTGCTTGCTGCC...................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.................................................................................GTAAATTGGGCGCCTTGGTCTTGGGAGG.................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
......................................CTAAGTGTCTTGCTTGCTGCCTGGGTGCC...........................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0
................................................................................GGTAAATTGGGCGCCTTGGTC.........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0

droVir3

GCCTC---------GGCGAAGGTACCACATTCCCGGCGTTGAGTGTTCTGCTTGCCGCCTGGGTGCCGGCTAATGAACGCGGCAAATTGGGCGCCTTGGTGCTGGGCGGCGGTCAGGTGGGCACCATTATGGGCAATATGCTGTCGGGGGTGTTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................GTACCACATTCCCGGCGTTGA....................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GGTACCACATTCCCGGCGTTGA....................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AGGTACCACATTCCCGGCGTTG.....................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..................................................................................CAAATTGGGCGCCTTGGTG.........................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AATTGGGCGCCTTGGTGCTGGGC...................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................CCACATTCCCGGCGTTGAG...................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AAATTGGGCGCCTTGGTG.........................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TGCCGCCTGGGTGCCGGCTAATGAACGCGGCAAATTGGGC..................................................................................................................................................................................................................................................................................................	40	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................GGCAAATTGGGCGCCTTGGTGCT.......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TGGTGCTGGGCGGCGGTCAGGT........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GCAAATTGGGCGCCTTGGTGCTGGGC...................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................GTGCCGGCTAATGAACGCGG............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCCTTGGTGCTGGGCGGCGGT.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TCTGCTTGCCGCCTGGGTGCC...........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................ATGGGCAATATGCTGTCGGGG.........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................CATTATGGGCAATATGCTGTCGGG..........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AAATTGGGCGCCTTGGTGC........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ATGAACGCGGCAAATTGG....................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AAATTGGGCGCCTTGGTGCTGGGC...................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GAAGGTACCACATTCCCGGCGTTG.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GTTGAGTGTTCTGCTTGCC......................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................GGCGGTCAGGTGGGCACCAT...............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ATTATGGGCAATATGCTGTCGGGGGTG......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CTC---------GGCGAAGGTACCACATTCC.............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................ATTCCCGGCGTTGAGTGTTCTGCTTGCC......................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGTGTTCTGCTTGCCGCCTGGGT..............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....C---------GGCGAAGGTACCACATTCCCGGC.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GTACCACATTCCCGGCGTT......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................ATTGGGCGCCTTGGTGCTGGGC...................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................TTGGGCGCCTTGGTGCTGGGC...................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................AATATGCTGTCGGGGGTGT.....................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CGGCGTTGAGTGTTCTGC...........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCCTTGGTGCTGGGCGGCGGTCAGG.........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GCCTTGGTGCTGGGCGGCG...............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CTC---------GGCGAAGGTACCACATT...............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CCACATTCCCGGCGTTGAGT..................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ATTATGGGCAATATGCTGTCGGGGGT.......................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................GTGTTCTGCTTGCCGCCTGGGT..............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................CTGCTTGCCGCCTGGGTGC............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CAATATGCTGTCGGGGGTG......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................GTTCTGCTTGCCGCCTGGGTGCCGGC........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....C---------GGCGAAGGTACCACATTCC.............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................TGGGCGGCGGTCAGGTGGGCAC..................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................GTTGAGTGTTCTGCTTGC.......................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TC------------------------------CCCGCATTGAGTGTCCTGCTGGCTGCCTGGGTGCCAGCCAACGAGCGTGGTAAACTGGGCGCCTTGGTCCTGGGCGGTGGTCAGGTGGGCACCATTTTGGGCAACCTGCTATCGGGCGTCTTCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................AGCCAACGAGCGTGGTAAACTGGG...................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
....................................................................GCCAACGAGCGTGGTAAACTGGG...................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................TGCCTGGGTGCCAGCCAACGAGCGTG.............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0
.........................................................................CGAGCGTGGTAAACTGGGCGCCTTGG...........................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................GCACCATTTTGGGCAACCTGCTATCGGG..........................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...........................................TGTCCTGCTGGCTGCCTGGGTGCC...........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droGri2

TC------------------------------CCAGCCTTGAGTGTCCTGCTAGCCGCATGGGTGCCGGCCAACGAACGTGGCAAACTGGGCGCTTTGGTTCTTGGCGGTGGCCAAGTGGGCACCATTATGGGTAATTTACTATCGGGCGTCTTCCTCGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................CGCTTTGGTTCTTGGCGGTGGC.............................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0
.....................................................................................................CTTGGCGGTGGCCAAGTGGGCA...................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0
........................................................................ACGAACGTGGCAAACTGGGCGCTTTGGT..........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1
.....................................................................................................CTTGGCGGTGGCCAAGTGGG.....................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
................................................................................................................................ATGGGTAATTTACTATCGGGCGTC......................................................................................................................................................................................................................................	24	1	1.00	1	1	0
................................................................................................................................ATGGGTAATTTACTATCGGGCGTCTTC...................................................................................................................................................................................................................................	27	1	1.00	1	1	0
......................................................................CAACGAACGTGGCAAACTGGGC..................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
..........................................................................GAACGTGGCAAACTGGGCGCTTTGGTT.........................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0
................................................................................................TGGTTCTTGGCGGTGGCCAAGTGGGC....................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0
.................................CAGCCTTGAGTGTCCTGCTA.........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1
..................................................................................................................AAGTGGGCACCATTATGG..........................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
................................................................................................................................ATGGGTAATTTACTATCGGGCGTCTT....................................................................................................................................................................................................................................	26	1	1.00	1	0	1
...............................................................................................TTGGTTCTTGGCGGTGGC.............................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
.......................................................................................................TGGCGGTGGCCAAGTGGGCA...................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
...................................................................................................................AGTGGGCACCATTATGGGTAATTT...................................................................................................................................................................................................................................................	24	1	1.00	1	0	1
.............................................................................................CTTTGGTTCTTGGCGGTGG..............................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
................................................................................GGCAAACTGGGCGCTTTG............................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
................................................................................................................................ATGGGTAATTTACTATCGGGC.........................................................................................................................................................................................................................................	21	1	1.00	1	1	0
.......................................................................................TGGGCGCTTTGGTTCTTGGCGGTGGC.............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1
.............................................................................................................................ATTATGGGTAATTTACTATCGGGCGTC......................................................................................................................................................................................................................................	27	1	1.00	1	0	1
......................................................................................................TTGGCGGTGGCCAAGTGGGCA...................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
...............................................CTGCTAGCCGCATGGGTGCC...........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
......................................................................................CTGGGCGCTTTGGTTCTTG.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1

dan_599

scaffold_12916:8129749-8129899 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads