ID:

dan_597

 Coordinate:

scaffold_12916:8047356-8047506 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.7 -21.5 -21.3

Flybase annnotation

exon [dana_GLEANR_15269:2]; CDS [Dana\GF14507-cds]; intron [Dana\GF14507-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGCTCAATATATCAAAATTAGAGTCTTCACCCAAAATTTCGCCTCTTATCGGAGTGAGTTCTATATAAAGGTCGCAGGCAATTGCAAAACAGTCATTCAAGCATATTGTTCCCTAGAGGCAGCTGAAATCATGAGAACAATCTGTAAGAACCACAGGAACCCCATCTTCCAAGGACTAACACTAACCACTTTTCTTGCAGTACTTGTGAGCGCCCTTTTCGTGGCCAGCATCAATGCCGCCAGCATTCAG
**************************************************.((((((((((((...........((((....))))......((..(((..(((.(((((((....((...........))....))))))).)))..)))..)).((((.......)))).))))))..))))..)).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 M044
female body
 V105
male body		 V055
head
..................................................................................................................TAGAGGCAGCTGAAATCATGAGAAC................................................................................................................ 25 0 1 3.00 3 2 1 0 0 0
.......................................................................................................................................................................................................CTTACTTGTGAGCGCCCTTTTCGT............................ 24 2 1 2.00 2 2 0 0 0 0
..............................................................................................................TCCCTAGAGGCAGCTGAAATCATGAG................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0
......................................................................................................................GGCAGCTGAAATCATGAGAAC................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0
.............................................................................................................................................................................................................................GGGGCCAGCATCAATGCCGC.......... 20 1 1 1.00 1 1 0 0 0 0
.......................................................................................................................GCAGCTGAAATCATGAGAAC................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................TGTGAGCGCCCTTTTCGTGGCC........................ 22 0 1 1.00 1 1 0 0 0 0
..............................................................................................................TCCCTAGAGGCAGCTGAAATCATGAGA.................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................GGGAGCGCCCTTTTCGTGGCCAGCATC.................. 27 1 1 1.00 1 1 0 0 0 0
.................................................................................................................CTAGAGGCAGCTGAAATC........................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
...............................................................................................................CCCTAGAGGCAGCTGAAATCATGAGA.................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................GTGTCCAGCATCAATGCCGCCAGC...... 24 1 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................GTGGCCAGCATCAATGCCGCC......... 21 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................GCGCCCTTTTCGTGGCCAGCATCAATGC............. 28 0 1 1.00 1 1 0 0 0 0
..............................................................................................................TCCCTAGAGGCAGCTGAAAT......................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................AGGCAGCTGAAATCATGAGAAC................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
...................................................................................................................AGCTGCAGCTGAAATCATGAGAAC................................................................................................................ 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................................CCCTAGAGGCAGCTGAAATCATGA.................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................................GGCTAGCATCAATGCCGCCAGC...... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................TTTCGTGGCCAGCATCAATGCCGCCA........ 26 0 1 1.00 1 1 0 0 0 0
............................................................................................................GTTCCCTAGAGGCAGCTGAAATC........................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
...................................................................................................AAGCATATTGTTCCCTAGAGGC.................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................................CAGCATCAATGCCGCCAGC...... 19 0 1 1.00 1 1 0 0 0 0
...................................................................................................AAGCATATTGTTCCCTAGAGGCA................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
....................................................................................................ATAATATTGTTCCCTAGAGGCAGCTGA............................................................................................................................ 27 2 1 1.00 1 1 0 0 0 0
..............................................................................................................TCCCTAGAGGCAGCTGAAATC........................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................................................................................CGTTCTTGTGAGCGCCCTTTTCGT............................ 24 2 1 1.00 1 1 0 0 0 0
..........................................................................................................TTTTTCCCTAGAGGCAGCTGA............................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................................CAGCATCAATGCCGCCAGCATTC.. 23 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................CGTGTGAGCGCCCTTTTCGTGGCCAGC..................... 27 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................AGGCAGCTGAAATCATGA.................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................................................................CCTTTTCGTGGCCAGCATC.................. 19 0 1 1.00 1 1 0 0 0 0
.................................................................................................................CTAGAGGCAGCTGAAATCATGAGAAC................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................................GGATATTGTTCCCTAGAGGC.................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0
....................................................................................................AGCATATTGTTCCCTAGAGGCAGCC.............................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
...............................................................................................................CCCTAGAGGCAGCTGAAAT......................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................GTGTGCGCCCTTTTCGTGGCCAGC..................... 24 1 1 1.00 1 1 0 0 0 0
...................................................................................................................AGAGGCAGCTGAAATCATGAGAAC................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................................................GTGGCCAGCATCAATGCCGCCAGC...... 24 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................CTTGTGAGCGCCCTTTTCGTGGCCAGC..................... 27 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................GTGAGCGCCCTTTTCGTGGCCAGC..................... 24 0 1 1.00 1 1 0 0 0 0
......................................................................................................................GACAGCTGAAATCATGAGAAC................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
........................................................................................................TATTGTTCCCTAGAGGCAGC............................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................CATTAACCAGTTTTCATGCAGT................................................. 22 3 3 0.67 2 0 0 1 1 0
................................................................GAAAAAGGTCGCAGGCAA......................................................................................................................................................................... 18 2 9 0.11 1 0 1 0 0 0
........................................................................................................................................................................................................................................CAGTGCGGCCAGCATTCA. 18 2 13 0.08 1 0 0 0 0 1
............TGAAAATTAGAGTGTTCA............................................................................................................................................................................................................................. 18 2 13 0.08 1 0 0 1 0 0
...............................................................................................................................................AGTAAGAACGACAGGAACCA........................................................................................ 20 3 15 0.07 1 1 0 0 0 0
..................................................................................................................................................AAGAACCACAAGAACCCGA...................................................................................... 19 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GGCGAGTTATATAGTTTTAATCTCAGAAGTGGGTTTTAAAGCGGAGAATAGCCTCACTCAAGATATATTTCCAGCGTCCGTTAACGTTTTGTCAGTAAGTTCGTATAACAAGGGATCTCCGTCGACTTTAGTACTCTTGTTAGACATTCTTGGTGTCCTTGGGGTAGAAGGTTCCTGATTGTGATTGGTGAAAAGAACGTCATGAACACTCGCGGGAAAAGCACCGGTCGTAGTTACGGCGGTCGTAAGTC
**************************************************.((((((((((((...........((((....))))......((..(((..(((.(((((((....((...........))....))))))).)))..)))..)).((((.......)))).))))))..))))..)).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V039
embryo
 V055
head
 M058
embryo
 V106
head
 V105
male body
.........................................................................................................................................TGTTGGGCATGCTTGGTGTCC............................................................................................. 21 3 1 1.00 1 1 0 0 0 0
.........................................................................................AGTGAGTGAGTTCGTATAACA............................................................................................................................................. 21 3 4 0.25 1 0 1 0 0 0
.......................CCGATGTGGGTTTTAAAG.................................................................................................................................................................................................................. 18 2 13 0.23 3 0 1 2 0 0
.........................................................................................................................................................TGTGCTTGGGGTAGAGGG................................................................................ 18 2 5 0.20 1 1 0 0 0 0
.......................................................................................................................................................GGTGTGCTTGGGGTAGAG.................................................................................. 18 2 7 0.14 1 0 1 0 0 0
........................CGATGTGGGTTTTAAAGC................................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 1 0
...................ATGTCCGATGTGGGTTTTAA.................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 1 0 0
..........................................AGAGAATAGCCTCGCTAAAG............................................................................................................................................................................................. 20 3 13 0.08 1 0 1 0 0 0
..............................................................................................................................................................TTTGGGTAGAAGGTTCGTGG......................................................................... 20 3 13 0.08 1 0 0 0 0 1
...................ATCACCGATGTGGGTTTTAA.................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 1 0 0
......................CCAGATGTGGGTTTTAAA................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 1 0 0
.....................................................................................................................................................................................TGATTGGTGATAAGAAGG.................................................... 18 2 14 0.07 1 0 1 0 0 0
.................AAATCTCACACGTGGGTTTT...................................................................................................................................................................................................................... 20 3 15 0.07 1 0 1 0 0 0
...............................................................................................TTAGTTCGTTTAACAATGGA........................................................................................................................................ 20 3 17 0.06 1 0 0 1 0 0
........................................................................................................................................TCGTTAGACATACTGGGTG................................................................................................ 19 3 19 0.05 1 1 0 0 0 0
...................AAGACAGAAGTGGGTTTTAA.................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0
................................................................................................................................................................................GAGTGTGATTGGGGAAGAG........................................................ 19 3 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:8047306-8047556 - dan_597 CCGC--------------TCAATATATCAAAATTAGAGTCTTCACCCAAAA---------------------------------------------------------------------TTTCGCCTCTTATCGGAGTGAGTTCTATATAAAGGTCGCAGGCAATTGCAAAACAGTCATTCAAGCATATTGTTCCC--TAGAGG--------------------------------------------------------CAGCTGA---A---ATCATGAGAACAATCTGTA-AGAACCA---------CAGGAACCC-----------------------------CA-----------------------------TCTTCCAAGGACTAA-CACTA-ACCA----------C--TT--TTCTTGCAGTACTTGTGAG---CGCCCTTTTCGTGGCCAGCATCAATGCCGCCAGCATT---------------------CAG
droBip1 scf7180000396554:661182-661470 - CCGC--------------TCAATATATCAAAATTAGAGAATTCGCCCAAAATGCATAAGTACCTGCCGCTT---TTTTATCAGAAAA------------AAG------------------TTACGCACCTTATCGGAATGATTTCTATATAAAGGTCGCGGGGAATTGCAAAAGAGTCATTCAAGCACATTGTTCCA--TAGT--------------------------------------------------------AGCAGCTGA---AACCATG---AGAACAATCTGTA-AGAACCA---------CAGGAATCC-----------------------------CA-----------------------------ACATCCAAGGACTAA-TACTA-ACCA----------CTACT--TCTTTACAGTACTTGTGAGC---GCCCTTTTCGTGGCAAGTATCAACGCCGCCAGCATT---------------------CAG
droKik1 scf7180000302136:10569-10920 - CCAA------------AATCAA--------------GGTCGCCGCCAAAGGCAG---AGTAAGTGCACTTTCTATACAACAGAAATACTGATAAGGC--CAGTAAATGGAGTAGAGGTACATCCATATCAACTGAGAGAGGCTTTCATATAAAAACTGGCGACTCTTGCGAAACCGTCATTCGAGCCCATTGCTCCC--TACAAGTCTA-CCG-----C----------AGCT-TCCAGAAGCAACA---CGAAGGAATAGCTGCCAA---CAGAATGAACAGTGCAATAGGTA-TGAACTC---------AAGGACCTCGGACCCTCCAGGTCGAA------------------------------------------------CGAAGACTAA-------CCCG----------TCTCC--CTCTTCCAGTGCTTGCCTGCGTCGCCATTTTGGTGGCGAGCACCAGTGCAGCCAGTCTG---------------------CAG
droFic1 scf7180000453932:713990-714344 + TCGAGTAACCATCAAAAATCAC--------------GGTTACCGCCGAAGACGCAGTAGTATCTACCCTAT-CAATTTATCGAAATAAAGATAAGGGGGAAG------------------ACATAGCTTTTTTCACAAATGGCTTCATATAAAAGCAAGC-ACACTTGCGAAACAGTCAGTCAAGCCTATCGGTCTG--TACACGACCTACTATTGTTCAAGCTT-GGTAGTG-AAAAGGATCCCCG---AAAAGGAATAGCTGCCGA--CAATAATGAAATTTGCGATAGGTA-TAAAGTC---------AAGAGGATTGCA---------------------------------------------------------A-TACCCAGAAATAA-------CCCC----------TCCTG--ATCTTTCAGTAATTGCCTGTGCCGCCGTTTTGGTGGCCAGCATGGATGCAGCCAGCGTG---------------------CAG
droEle1 scf7180000486799:11631-11973 + ATGAG-------------TAAC--------------CAT-CGCGCACAAGGCATAATAGTATCTGCCCAAT-CTTTTTATCGAAATAGCGATAAGGG--GAG------------------ATACCTGGCTTTTGA----------CATATAAAGACCAGC-GCACTTGCGACACATTCATTCAAGCTTATTGCTCTG--TACTAGACTTATTGTTTTGCAAGCATAGATAGTA-ACTAGTATCCTAA---CACTGGAATAGCTGCAGT---TGGAATGAATTCATCAATAGGTA-CGAATCG------AAAAAG-------AACCCTACAGCCGAATC-----------TA-----------------------------CCAACAAAGGACTAA-------GACA----------TCTTT--CCCTTACAGTAATTGCCTGTGTCGCCGTTTTGGTGGCCAGCATTAACGCCGCTAGTGTG---------------------CAG
droRho1 scf7180000768908:4224-4569 + T-----------------------------------------CGCCCAAGGCGTAGTTGTATCTGGCCCAT-CTATCAATCAAAATACCGATAACGG--TAG------------------ATATCAATTTTGTGACAAAGGGCTTCATATAAAGGCCAGC-GCACTTGCGACACATTCATTCAAGCTTATTGGTCTG--TGCAAGTCTTATTATTGTGCAAGCATAAGAAGTA-CCAAGGAGCCTCA---CAAAGGAATAGCTGACAT---TAGAATGAATTTTTTAATAGGTA-TGACTCGGAAAAATTCTAA-------AAAGCCGCAGCCGAAAC-----------CG-----------------------------CGAACAAAGGACTAA-------CACA----------TCTCT--CACTTACAGTACTTGCCTGCGCTGCACTTTTGGTGGCCAGCACCAATGCCGCCAGTGTA---------------------CAG
droTak1 scf7180000413278:1157-1492 + CCGC--------------ACAC---------------------------GATACAATAGTATGGGCCTCAT-CAATTTATCGAAAACCAGATAAGGGAGGAG------------------ATACTCGTATTGTGACAAAGGGCTTCATATAAAAGACAGT-CGACTTGCGAAACAGTCATTAAAGCTTATTGGTCTG--TACAAGACTTATAATTGTGCAAGCTTAGGCAGTTGAAAAGAAGGACCA---AAGAGGAATATTTTCTAG---TAGAATGAAATTTGTCATAGGTA-AGTAACAGATAAATTTGTG-------CACTTT--C---------------------------------------------------ACTCGAAGGTGTTA-------ACCA----------TCACA--TCCTTGCAGTAATTGCCTGCGTCGCCCTTTCGGTGGTCGGTATCAATGCCGCCAGCGTG---------------------CAG
droEug1 scf7180000409676:388443-388774 - C-----------------------------------------CGCCCAAGACGCAATAGTGTGTGGCCTG-----TCTATCAAAAACTCGATAAGGG--GAG------------------ATACTCATCTTGAGACAAAGGGCTTCATATAAAAGACTGT-GCACTTGCAAAACAGTCATTAAAGCGTGTTCGTCAG--CACGAGACTT---ATTGTGCAAGCTTAAATAATA-CAAAGGAACTCTA---AACAGGAATAGCTGCCGA---CAAAATGAAAGTTGCCTTTGGTA-TGAAAGGGATACAGTTAAG-------GAGTCTGAAGACGA-----------------------------------------------CACTAAGGACTAA-------ACCA----------TCTTT--TCCTTCCAGTAATTGCCTGTGCCGCCCTTTTCGTGGCTAGCATCAGTGCCGCTAGTGTG---------------------CAG
dm3 chr2L:6151859-6152179 + ATGA--------------TCAC--------------GCT-TCCGCCAAAGTCGCAATAGTATGTT-CATAT-ATTTTTTTCGTGACTCCGATAAGGT----------------------------------GTGACAAAGTGCTTCATATAAAAGGCGGT-GCACTTGCGAAACAATCATTACAGCTTATTGGTCTG--TACAAGACTTAATATTGTGCAAGC------------AAAGGAGTCGCA---AAGAGGAACAGCTGTCCA---TAGAATGAAATACGCCATAGGTAACGA-----ATTTGTTTGTG-------CACCCTATAGACCGA-----------------------------------------------ACCAAGGACTAA-------ACCA----------TCTTA--TTCTTGCAGTAATTGCATGTGCCGCCCTTGCGGTGGCCAGCATCAATGCCGCCAGTGTG---------------------CAG
droSim2 2l:5947601-5947937 + ATGA--------------TCAC--------------GCT-TCCGCCAAAGTCGCAATAGTATGTT-CCAAT-ATTTTTGTCGAAATTTCGATAAGGT----------------------------------GTGACACAGTGCTTCATATAAAAGGCGGT-GCACTTGCGAAACAATCATTACAGCTTATTGGTCTG--TACAAGACTTAATATTGTGCAAGC------------AAAGGAGTCGCA---AAAAGGAATAGCTGTCTA---TAGAATGAAATACGCCATAGGTAACGA-----ATTTGTTTGTG-------CACCCTATAGACCGAAG-----------CG-----------------------------TCTACCAAGGACTAA-------ACAA----------TCTTA--TTCTTGCAGTAATTGCCTGTGCCGCCCTTGCGGTGGCCAGCATCAATGCCGCCAGTGTGCCGGGC------------GTGCAG
droSec2 scaffold_5:4222265-4222615 + ATGA--------------TCAC--------------GCT-TCCGCCAAAGTCGCAATAGTATGTT-CCAAT-ATTTTTGTGGAAATACCGATAAGGT----------------------------------GTGACAAAGTGCTTCATATAAAAGGCGGT-TCACTTGCGAAACAATCATTACAGCTTATTGGTCTGTGTACAAGACTTAATATTGTGCAAGC------------AAAGGAGTCGCA---AAAAGGAATAGCTGTCTA---TAGAATGAAATACGCCATAGGTAACGA-----ATTTGTTTGTG-------CACCCTATAGACCGAAG-----------CG-----------------------------TCTACCAAGGACTAA-------ACCA----------TCTTA--TTCTTGCAGTAATTGCCTGTGCCGCCCTTGCGGTGGCCAGCATCAATGCCGCCAGTGTGCCGGGCGTGCATCCGGGCGTGCAG
droYak3 2L:6760633-6760956 - ATGA--------------TCAC--------------GCTTTCCGCCAAAGTCGCAATAGTATGTTTCCTTA-AATTTTGTCGAAACTCTGATAAGGC----------------------------------ACAACAAACTGCTTCATATAAAAGGCGGT-GCACTTGCGAAACAGTCATTACAGCTTATTGGTCTG--TACAAGAATTATTATTGTGCAAAC------------AAAGGAGTCGCA---AAAAGGAATAGCTGTCGA---TAGAATGAAATTTGCCACAGGTAACGA-----ATTTGTTTGTG-------C--TCTATAGACCAAAG-----------C---------------------------------GCCAAGGACTAA-------CCCA----------TCTTA--TCCTTACAGTAATTGCCTGTGCTGCCCTCTGGGTAGCCAGCATCAATGCCGCCAGTGTG---------------------CAG
droEre2 scaffold_4929:15077955-15078284 + ATGA--------------TCAC--------------GCTATCCGCCAAAGTCGCAATAGTATTTTTCCTAT-ATTTTTGTCGAAACTCCGATAAGGT----------------------------------GTGATAAAGTGCTTCATATAAAAGGGGGT-GCACTTGCGAAACAGTCATTACAGTTTATTGTTCGG--TACAAGACTTATTATTGTGCAAGC------------AAAGGAGCTGCA---AAAAGGAATAGCTGTCGA---TAGAATGAAATTGGCCATAGGTAACGA-----ATTTGTTTGTG-------CAGTCTATAGACCAAAG-----------CG-----------------------------TCTGCCAAGGACTAA-------ACCA----------TCTTA--TTCTTGCAGTAATTGCCTGTGCCGCCCTTTCGGTGATCGGCATCAATGCCGTTAGTGTG---------------------CAG
dp5 4_group1:428-691 - AAAG--------------------------------------------------------------------------------------------------------------------ATACGCATCTTCCGTGCGAGGCCTCTGTATAAAAGCCAGCGGCACTTGCGAAACAGTCATTCCAGTACAGCACTTTG--TACA--------------GCAAGA------AG---AACAGAACCCGCACTCAAAAGGAATAGCTGCCAAACTAAGAATGAAGAGCACATTCGGTA-TGAATCT---------CGGA--------CTAT-------------------------------------------TTGCTGCCCAA-CAGCAAGGACTAA-------CCCA-------CA-TCCTAACCCATTGCAGTAATTGCCTGTGCCGCCATCCTGGTGGCCAGTATCAGTGCCGCCAGCGTG------------------------
droPer2 scaffold_1:1-37 - T-----------------------------------------------------------------------------------------------------------------------------------------------CTGTATAAAAGCCAGCGGCACTTGCGAAACAGTCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004521:7597346-7597461 - ATGA--------------AAAC--------------AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAATAAATGCCGT----------------------------------------------------------------------------------------------------------------------AAGGATCAAACACTAACCCG-------CAAGTATT--CTCTTTCAGCTCTTGCCTGTCTGGCCGTTTTGGTGGCCACCATCGGTGCTGCCAAAATT---------------------CAA
droVir3 scaffold_10051:812-905 - C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGACTAA-CCCTA-CCTATATCCGTT--TAACC--CCTTTCTAGTCCTTACCTGCCTGGCTCTACTGGTGGCCACCACGGGTGCCGCCAACATA---------------------AGG
droMoj3 scaffold_6500:13442212-13442413 - TTTG------------TATCAA--------GTTCGAA------GCCCCAG----------------------------------------------------------------------------------------------------------------CAAAAGCA----------------------------------------------------------------------------A---AACAGGAATAGCTGTCC------------------------------------------------------CGCTCTCTCGGCCGATTGAAGATGAGAGCCCATTACGGTATGTGGGCACTTGCAAC---ACCATCAAGGACTTA-------ACTATAAATGTCTGATCTC--GTCTTTTAGTCCTTGCCTGCCTGGCTGTTTTGGTGGCTACCACTGGAGCCGCCAACATA---------------------CGA
droGri2 scaffold_15252:2706310-2706370 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTACAGTCCTTGCCTGCCTGGCTCTTCTGGTGGCCACCACCAGTGCTGCCAATATA---------------------AGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CCGC--------------TCAATATATCAAAATTAGAGTCTTCACCCAAAA---------------------------------------------------------------------TTTCGCCTCTTATCGGAGTGAGTTCTATATAAAGGTCGCAGGCAATTGCAAAACAGTCATTCAAGCATATTGTTCCC--TAGAGG--------------------------------------------------------CAGCTGA---A---ATCATGAGAACAATCTGTA-AGAACCA---------CAGGAACCC-----------------------------CA-----------------------------TCTTCCAAGGACTAA-CACTA-ACCA----------C--TT--TTCTTGCAGTACTTGTGAG---CGCCCTTTTCGTGGCCAGCATCAATGCCGCCAGCATT---------------------CAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................TAGAGG--------------------------------------------------------CAGCTGA---A---ATCATGAGAAC............................................................................................................................................................................................................................2513.003021000
.................................................................................................................................................................................................TCCC--TAGAGG--------------------------------------------------------CAGCTGA---A---ATCATGAG...............................................................................................................................................................................................................................2612.002020000
...........................................................................................................................................................................................................GG--------------------------------------------------------CAGCTGA---A---ATCATGAGAAC............................................................................................................................................................................................................................2112.002020000
............................................................................................................................................................................................................G--------------------------------------------------------CAGCTGA---A---ATCATGAGAAC............................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAG---CGCCCTTTTCGTGGCC.............................................2211.001010000
.................................................................................................................................................................................................TCCC--TAGAGG--------------------------------------------------------CAGCTGA---A---ATCATGAGA..............................................................................................................................................................................................................................2711.001010000
....................................................................................................................................................................................................C--TAGAGG--------------------------------------------------------CAGCTGA---A---ATC....................................................................................................................................................................................................................................1811.001010000
..................................................................................................................................................................................................CCC--TAGAGG--------------------------------------------------------CAGCTGA---A---ATCATGAGA..............................................................................................................................................................................................................................2611.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCAGCATCAATGCCGCC..............................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CGCCCTTTTCGTGGCCAGCATCAATGC..................................2811.001010000
.................................................................................................................................................................................................TCCC--TAGAGG--------------------------------------------------------CAGCTGA---A---AT.....................................................................................................................................................................................................................................2011.001001000
..........................................................................................................................................................................................................AGG--------------------------------------------------------CAGCTGA---A---ATCATGAGAAC............................................................................................................................................................................................................................2211.001010000
..................................................................................................................................................................................................CCC--TAGAGG--------------------------------------------------------CAGCTGA---A---ATCATGA................................................................................................................................................................................................................................2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTGGCCAGCATCAATGCCGCCA.............................2611.001010000
...............................................................................................................................................................................................GTTCCC--TAGAGG--------------------------------------------------------CAGCTGA---A---ATC....................................................................................................................................................................................................................................2311.001010000
......................................................................................................................................................................................AAGCATATTGTTCCC--TAGAGG--------------------------------------------------------C....................................................................................................................................................................................................................................................2211.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATGCCGCCAGC...........................1911.001010000
......................................................................................................................................................................................AAGCATATTGTTCCC--TAGAGG--------------------------------------------------------CA...................................................................................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................TCCC--TAGAGG--------------------------------------------------------CAGCTGA---A---ATC....................................................................................................................................................................................................................................2111.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATGCCGCCAGCATT---------------------C..2311.001010000
..........................................................................................................................................................................................................AGG--------------------------------------------------------CAGCTGA---A---ATCATGA................................................................................................................................................................................................................................1811.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTCGTGGCCAGCATC.......................................1911.001010000
....................................................................................................................................................................................................C--TAGAGG--------------------------------------------------------CAGCTGA---A---ATCATGAGAAC............................................................................................................................................................................................................................2611.001010000
.......................................................................................................................................................................................AGCATATTGTTCCC--TAGAGG--------------------------------------------------------CAGCC................................................................................................................................................................................................................................................2511.001010000
..................................................................................................................................................................................................CCC--TAGAGG--------------------------------------------------------CAGCTGA---A---AT.....................................................................................................................................................................................................................................1911.001010000
........................................................................................................................................................................................................AGAGG--------------------------------------------------------CAGCTGA---A---ATCATGAGAAC............................................................................................................................................................................................................................2411.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCAGCATCAATGCCGCCAGC...........................2411.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGAG---CGCCCTTTTCGTGGCCAGC..........................................2711.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAG---CGCCCTTTTCGTGGCCAGC..........................................2411.001010000
...........................................................................................................................................................................................TATTGTTCCC--TAGAGG--------------------------------------------------------CAGC.................................................................................................................................................................................................................................................2011.001010000
droBip1
CCGC--------------TCAATATATCAAAATTAGAGAATTCGCCCAAAATGCATAAGTACCTGCCGCTT---TTTTATCAGAAAA------------AAG------------------TTACGCACCTTATCGGAATGATTTCTATATAAAGGTCGCGGGGAATTGCAAAAGAGTCATTCAAGCACATTGTTCCA--TAGT--------------------------------------------------------AGCAGCTGA---AACCATG---AGAACAATCTGTA-AGAACCA---------CAGGAATCC-----------------------------CA-----------------------------ACATCCAAGGACTAA-TACTA-ACCA----------CTACT--TCTTTACAGTACTTGTGAGC---GCCCTTTTCGTGGCAAGTATCAACGCCGCCAGCATT---------------------CAGSizeHit CountTotal NormTotal
No Reads
droKik1
CCAA------------AATCAA--------------GGTCGCCGCCAAAGGCAG---AGTAAGTGCACTTTCTATACAACAGAAATACTGATAAGGC--CAGTAAATGGAGTAGAGGTACATCCATATCAACTGAGAGAGGCTTTCATATAAAAACTGGCGACTCTTGCGAAACCGTCATTCGAGCCCATTGCTCCC--TACAAGTCTA-CCG-----C----------AGCT-TCCAGAAGCAACA---CGAAGGAATAGCTGCCAA---CAGAATGAACAGTGCAATAGGTA-TGAACTC---------AAGGACCTCGGACCCTCCAGGTCGAA------------------------------------------------CGAAGACTAA-------CCCG----------TCTCC--CTCTTCCAGTGCTTGCCTGCGTCGCCATTTTGGTGGCGAGCACCAGTGCAGCCAGTCTG---------------------CAGSizeHit CountTotal NormTotal
No Reads
droFic1
TCGAGTAACCATCAAAAATCAC--------------GGTTACCGCCGAAGACGCAGTAGTATCTACCCTAT-CAATTTATCGAAATAAAGATAAGGGGGAAG------------------ACATAGCTTTTTTCACAAATGGCTTCATATAAAAGCAAGC-ACACTTGCGAAACAGTCAGTCAAGCCTATCGGTCTG--TACACGACCTACTATTGTTCAAGCTT-GGTAGTG-AAAAGGATCCCCG---AAAAGGAATAGCTGCCGA--CAATAATGAAATTTGCGATAGGTA-TAAAGTC---------AAGAGGATTGCA---------------------------------------------------------A-TACCCAGAAATAA-------CCCC----------TCCTG--ATCTTTCAGTAATTGCCTGTGCCGCCGTTTTGGTGGCCAGCATGGATGCAGCCAGCGTG---------------------CAGSizeHit CountTotal NormTotal
No Reads
droEle1
ATGAG-------------TAAC--------------CAT-CGCGCACAAGGCATAATAGTATCTGCCCAAT-CTTTTTATCGAAATAGCGATAAGGG--GAG------------------ATACCTGGCTTTTGA----------CATATAAAGACCAGC-GCACTTGCGACACATTCATTCAAGCTTATTGCTCTG--TACTAGACTTATTGTTTTGCAAGCATAGATAGTA-ACTAGTATCCTAA---CACTGGAATAGCTGCAGT---TGGAATGAATTCATCAATAGGTA-CGAATCG------AAAAAG-------AACCCTACAGCCGAATC-----------TA-----------------------------CCAACAAAGGACTAA-------GACA----------TCTTT--CCCTTACAGTAATTGCCTGTGTCGCCGTTTTGGTGGCCAGCATTAACGCCGCTAGTGTG---------------------CAGSizeHit CountTotal NormTotal
No Reads
droRho1
T-----------------------------------------CGCCCAAGGCGTAGTTGTATCTGGCCCAT-CTATCAATCAAAATACCGATAACGG--TAG------------------ATATCAATTTTGTGACAAAGGGCTTCATATAAAGGCCAGC-GCACTTGCGACACATTCATTCAAGCTTATTGGTCTG--TGCAAGTCTTATTATTGTGCAAGCATAAGAAGTA-CCAAGGAGCCTCA---CAAAGGAATAGCTGACAT---TAGAATGAATTTTTTAATAGGTA-TGACTCGGAAAAATTCTAA-------AAAGCCGCAGCCGAAAC-----------CG-----------------------------CGAACAAAGGACTAA-------CACA----------TCTCT--CACTTACAGTACTTGCCTGCGCTGCACTTTTGGTGGCCAGCACCAATGCCGCCAGTGTA---------------------CAGSizeHit CountTotal NormTotal
No Reads
droTak1
CCGC--------------ACAC---------------------------GATACAATAGTATGGGCCTCAT-CAATTTATCGAAAACCAGATAAGGGAGGAG------------------ATACTCGTATTGTGACAAAGGGCTTCATATAAAAGACAGT-CGACTTGCGAAACAGTCATTAAAGCTTATTGGTCTG--TACAAGACTTATAATTGTGCAAGCTTAGGCAGTTGAAAAGAAGGACCA---AAGAGGAATATTTTCTAG---TAGAATGAAATTTGTCATAGGTA-AGTAACAGATAAATTTGTG-------CACTTT--C---------------------------------------------------ACTCGAAGGTGTTA-------ACCA----------TCACA--TCCTTGCAGTAATTGCCTGCGTCGCCCTTTCGGTGGTCGGTATCAATGCCGCCAGCGTG---------------------CAGSizeHit CountTotal NormTotal
No Reads
droEug1
C-----------------------------------------CGCCCAAGACGCAATAGTGTGTGGCCTG-----TCTATCAAAAACTCGATAAGGG--GAG------------------ATACTCATCTTGAGACAAAGGGCTTCATATAAAAGACTGT-GCACTTGCAAAACAGTCATTAAAGCGTGTTCGTCAG--CACGAGACTT---ATTGTGCAAGCTTAAATAATA-CAAAGGAACTCTA---AACAGGAATAGCTGCCGA---CAAAATGAAAGTTGCCTTTGGTA-TGAAAGGGATACAGTTAAG-------GAGTCTGAAGACGA-----------------------------------------------CACTAAGGACTAA-------ACCA----------TCTTT--TCCTTCCAGTAATTGCCTGTGCCGCCCTTTTCGTGGCTAGCATCAGTGCCGCTAGTGTG---------------------CAGSizeHit CountTotal NormTotal
No Reads
dm3
ATGA--------------TCAC--------------GCT-TCCGCCAAAGTCGCAATAGTATGTT-CATAT-ATTTTTTTCGTGACTCCGATAAGGT----------------------------------GTGACAAAGTGCTTCATATAAAAGGCGGT-GCACTTGCGAAACAATCATTACAGCTTATTGGTCTG--TACAAGACTTAATATTGTGCAAGC------------AAAGGAGTCGCA---AAGAGGAACAGCTGTCCA---TAGAATGAAATACGCCATAGGTAACGA-----ATTTGTTTGTG-------CACCCTATAGACCGA-----------------------------------------------ACCAAGGACTAA-------ACCA----------TCTTA--TTCTTGCAGTAATTGCATGTGCCGCCCTTGCGGTGGCCAGCATCAATGCCGCCAGTGTG---------------------CAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................CGCA---AAGAGGAACAGCTGTCCA---TA.........................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CCAAAGTCGCAATAGTATGTT-........................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CTG--TACAAGACTTAATAT....................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CGCA---AAGAGGAACAGCTGTCC...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AAGGAGTCGCA---AAGAGGA.........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GCAAGC------------AAAGGAGTCGCA---................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GTCGCA---AAGAGGAACAGCTGTCCA---TAGA.......................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCATCAATGCCGCCA.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CTTAATATTGTGCAAGC------------AAAGGAGT.......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAAGGAGTCGCA---AAGAGGAACAGCT...................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CAGCTTATTGGTCTG--TACA...............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................ATTGTGCAAGC------------AAAGGAGT.......................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CA---AAGAGGAACAGCTGTCC...............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CA---AAGAGGAACAGCTGTCCA---T..........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AGCTTATTGGTCTG--TACAAGA............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GTCCA---TAGAATGAAATAC..............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATGCCGCCAGTGTG---------------------CA.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATGCCGCCAGT...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................GCA---AAGAGGAACAGCTGTCC...............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTAATATTGTGCAAGC------------AAAGGAGTC......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................G--TACAAGACTTAATATTGT.................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CTGTCCA---TAGAATGAAATACG.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TCCA---TAGAATGAAATACGCCATAGGT.....................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................ATTGTGCAAGC------------AAAGGAGTC......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATGA--------------TCAC--------------GCT-TCCGCCAAAGTCGCAATAGTATGTT-CCAAT-ATTTTTGTCGAAATTTCGATAAGGT----------------------------------GTGACACAGTGCTTCATATAAAAGGCGGT-GCACTTGCGAAACAATCATTACAGCTTATTGGTCTG--TACAAGACTTAATATTGTGCAAGC------------AAAGGAGTCGCA---AAAAGGAATAGCTGTCTA---TAGAATGAAATACGCCATAGGTAACGA-----ATTTGTTTGTG-------CACCCTATAGACCGAAG-----------CG-----------------------------TCTACCAAGGACTAA-------ACAA----------TCTTA--TTCTTGCAGTAATTGCCTGTGCCGCCCTTGCGGTGGCCAGCATCAATGCCGCCAGTGTGCCGGGC------------GTGCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................GTCGCA---AAAAGGAATAGCT...................................................................................................................................................................................................................................................1917.00700600000000100000
.......................................................................................................................................................................................................................................................................GTCTA---TAGAATGAAATACGCCATA........................................................................................................................................................................................................................2416.00600600000000000000
.........................................................................................................................................................................................................................................................................CTA---TAGAATGAAATACGCC...........................................................................................................................................................................................................................1915.00500400000000100000
...................................................................................................................................................................................................................................................CGCA---AAAAGGAATAGCTGT.................................................................................................................................................................................................................................................1912.00200000000000200000
......................................................................................................................................................................................................................................................................TGTCTA---TAGAATGAAATACGCC...........................................................................................................................................................................................................................2212.00200200000000000000
.................................................................................................................................................................................................................................................GTCGCA---AAAAGGAATAGCTGTCTA---T..........................................................................................................................................................................................................................................2512.00200200000000000000
.........................................................................................................................................................................................................................................................................CTA---TAGAATGAAATACGCCAT.........................................................................................................................................................................................................................2112.00200200000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATGCCGCCAGTGTGCC......................2012.00200200000000000000
...................................................................................................................................................................................TTACAGCTTATTGGTCTG--...................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
..............................................................................................................................................................................................................CTTAATATTGTGCAAGC------------AAAGGAGT.......................................................................................................................................................................................................................................................................2511.00100100000000000000
.................................................................................................................................................................................................................................................GTCGCA---AAAAGGAATAGCTGTCT...............................................................................................................................................................................................................................................2311.00100100000000000000
..........................................................................................................................................................................................TTATTGGTCTG--TACAAGA............................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..................................................................................................................................................................................ATTACAGCTTATTGGTCTA--...................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..................................................................................................................................................................................ATTACAGCTTATTGGTCTG--...................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.......................................................................................................................................................................................AGCTTATTGGTCTG--TACAAG.............................................................................................................................................................................................................................................................................................................2011.00100100000000000000
........................................................................................................................................................................................................................................................................TCTA---TAGAATGAAATACGCCATA........................................................................................................................................................................................................................2311.00100100000000000000
............................................................................................................................................................................................................GACTTAATATTGTGCAAGC------------AAAGGAGT.......................................................................................................................................................................................................................................................................2711.00100000000000100000
.......................................................................................................................................................................................................................................................................GTCTA---TAGAATGAAATACGCC...........................................................................................................................................................................................................................2111.00100100000000000000
...............................................................................................................................................................................................................................................GAGTCGCA---AAAAGGAATAGCT...................................................................................................................................................................................................................................................2111.00100000000000100000
droSec2
ATGA--------------TCAC--------------GCT-TCCGCCAAAGTCGCAATAGTATGTT-CCAAT-ATTTTTGTGGAAATACCGATAAGGT----------------------------------GTGACAAAGTGCTTCATATAAAAGGCGGT-TCACTTGCGAAACAATCATTACAGCTTATTGGTCTGTGTACAAGACTTAATATTGTGCAAGC------------AAAGGAGTCGCA---AAAAGGAATAGCTGTCTA---TAGAATGAAATACGCCATAGGTAACGA-----ATTTGTTTGTG-------CACCCTATAGACCGAAG-----------CG-----------------------------TCTACCAAGGACTAA-------ACCA----------TCTTA--TTCTTGCAGTAATTGCCTGTGCCGCCCTTGCGGTGGCCAGCATCAATGCCGCCAGTGTGCCGGGCGTGCATCCGGGCGTGCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................TTATTGGTCTGTGTACAAGAC...........................................................................................................................................................................................................................................................................................................2112.0020020
...................................................................................................................................................................................................................................................CGCA---AAAAGGAATAGCTGT.................................................................................................................................................................................................................................................1912.0020020
....................................................................................................................................................................................................................................................GCA---AAAAGGAATAGCTGT.................................................................................................................................................................................................................................................1811.0010010
..........................................................................................................................................................................................................AAGACTTAATATTGTGCAAGC------------AAAG...........................................................................................................................................................................................................................................................................2511.0010010
.................................................................................................................................................................................................................................................GTCGCA---AAAAGGAATAGCTGT.................................................................................................................................................................................................................................................2111.0010010
..................................................................................................................................................................................ATTACAGCTTATTGGTCTG.....................................................................................................................................................................................................................................................................................................................1911.0010010
....................................................................................................................................................................................................................ATTGTGCAAGC------------AAAGGAGTCGCA---................................................................................................................................................................................................................................................................2311.0010010
..................................................................................................................................................................................................................................................TCGCA---AAAAGGAATAGCTGT.................................................................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................GCTTATTGGTCTGTGTACAAGA............................................................................................................................................................................................................................................................................................................2211.0010010
droYak3
ATGA--------------TCAC--------------GCTTTCCGCCAAAGTCGCAATAGTATGTTTCCTTA-AATTTTGTCGAAACTCTGATAAGGC----------------------------------ACAACAAACTGCTTCATATAAAAGGCGGT-GCACTTGCGAAACAGTCATTACAGCTTATTGGTCTG--TACAAGAATTATTATTGTGCAAAC------------AAAGGAGTCGCA---AAAAGGAATAGCTGTCGA---TAGAATGAAATTTGCCACAGGTAACGA-----ATTTGTTTGTG-------C--TCTATAGACCAAAG-----------C---------------------------------GCCAAGGACTAA-------CCCA----------TCTTA--TCCTTACAGTAATTGCCTGTGCTGCCCTCTGGGTAGCCAGCATCAATGCCGCCAGTGTG---------------------CAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................AC------------AAAGGAGTCGCA---AAAAGGAATAGCT...................................................................................................................................................................................................................................................2711.00100100000000
............................................................................................................................................................................................................................AAC------------AAAGGAGTCGCA---AAAAGGAATAGCT...................................................................................................................................................................................................................................................2811.00100100000000
...........................................................................................................................................................................................................................AAAC------------AAAGGAGTCGCA---AAAAGGA.........................................................................................................................................................................................................................................................2311.00100100000000
droEre2
ATGA--------------TCAC--------------GCTATCCGCCAAAGTCGCAATAGTATTTTTCCTAT-ATTTTTGTCGAAACTCCGATAAGGT----------------------------------GTGATAAAGTGCTTCATATAAAAGGGGGT-GCACTTGCGAAACAGTCATTACAGTTTATTGTTCGG--TACAAGACTTATTATTGTGCAAGC------------AAAGGAGCTGCA---AAAAGGAATAGCTGTCGA---TAGAATGAAATTGGCCATAGGTAACGA-----ATTTGTTTGTG-------CAGTCTATAGACCAAAG-----------CG-----------------------------TCTGCCAAGGACTAA-------ACCA----------TCTTA--TTCTTGCAGTAATTGCCTGTGCCGCCCTTTCGGTGATCGGCATCAATGCCGTTAGTGTG---------------------CAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................CGA---TAGAATGAAATTGGCC...........................................................................................................................................................................................................................1912.0020200000
.................................................................................................................................................................................................................................................................ATAGCTGTCGA---TAGAATGAAATTGGC............................................................................................................................................................................................................................2611.0010100000
.........................................................................................................................................................................................................CAAGACTTATTATTGTGCAAGC------------...............................................................................................................................................................................................................................................................................2211.0010100000
...............................................................................................................................................................................................................TTATTATTGTGCAAGC------------AAAGGA.........................................................................................................................................................................................................................................................................2211.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAATTGCCTGTGCCGCCCTTT.....................................................2311.0010100000
...........................................................................................................................................................................................................................................AAAGGAGCTGCA---AAAAGGA.........................................................................................................................................................................................................................................................1911.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTGATCGGCATCAATGC..................................2111.0010001000
.......................................................................................................................................................................................................................GTGCAAGC------------AAAGGAGCTGC....................................................................................................................................................................................................................................................................1911.0010100000
....................................................................................................................................................................................................................................................GCA---AAAAGGAATAGCTGTC................................................................................................................................................................................................................................................1911.0010001000
dp5
AAAG--------------------------------------------------------------------------------------------------------------------ATACGCATCTTCCGTGCGAGGCCTCTGTATAAAAGCCAGCGGCACTTGCGAAACAGTCATTCCAGTACAGCACTTTG--TACA--------------GCAAGA------AG---AACAGAACCCGCACTCAAAAGGAATAGCTGCCAAACTAAGAATGAAGAGCACATTCGGTA-TGAATCT---------CGGA--------CTAT-------------------------------------------TTGCTGCCCAA-CAGCAAGGACTAA-------CCCA-------CA-TCCTAACCCATTGCAGTAATTGCCTGTGCCGCCATCCTGGTGGCCAGTATCAGTGCCGCCAGCGTG------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................ACAGCACTTTG--TACA--------------GCAAGA------AG---AAC.............................................................................................................................................................................................................................................................................2614.0040000000004
..........................................................................................................................................................................................ACAGCACTTTG--TACA--------------GCAAGA------AG---A...............................................................................................................................................................................................................................................................................2412.0020000000002
.................................................................................................................................................................................................................................................................ATAGCTGCCAAACTAAGAATGAAGAGC..............................................................................................................................................................................................................................2711.0010000000001
........................................................................................................................................................................................................ACA--------------GCAAGA------AG---AACAGAACCC......................................................................................................................................................................................................................................................................2111.0010000000001
............................................................................................................................................................................................AGCACTTTG--TACA--------------GCAAG............................................................................................................................................................................................................................................................................................1811.0010000100000
..........................................................................................................................................................................................................................................AACAGAACCCGCACTCAAAAGGAAT.......................................................................................................................................................................................................................................................2511.0010000100000
..........................................................................................................................................................................................ACAGCACTTTG--TACA--------------GCAAGA------AG---AACAG...........................................................................................................................................................................................................................................................................2811.0010000000001
...........................................................................................................................................................................................CAGCACTTTG--TACA--------------GCAAGA------AG---AAC.............................................................................................................................................................................................................................................................................2511.0010000000001
..........................................................................................................................................................................................ACAGCACTTTG--TACA--------------GCAAGA------.....................................................................................................................................................................................................................................................................................2111.0010000100000
..........................................................................................................................................................................................ACAGCACTTTG--TACA--------------GCAAGA------AG---AACA............................................................................................................................................................................................................................................................................2711.0010000000001
droPer2
T-----------------------------------------------------------------------------------------------------------------------------------------------CTGTATAAAAGCCAGCGGCACTTGCGAAACAGTCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATGA--------------AAAC--------------AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAATAAATGCCGT----------------------------------------------------------------------------------------------------------------------AAGGATCAAACACTAACCCG-------CAAGTATT--CTCTTTCAGCTCTTGCCTGTCTGGCCGTTTTGGTGGCCACCATCGGTGCTGCCAAAATT---------------------CAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGACTAA-CCCTA-CCTATATCCGTT--TAACC--CCTTTCTAGTCCTTACCTGCCTGGCTCTACTGGTGGCCACCACGGGTGCCGCCAACATA---------------------AGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTGGCCACCACGGGTGCCGC...............................2411.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCCACCACGGGTGCC.................................1911.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
TTTG------------TATCAA--------GTTCGAA------GCCCCAG----------------------------------------------------------------------------------------------------------------CAAAAGCA----------------------------------------------------------------------------A---AACAGGAATAGCTGTCC------------------------------------------------------CGCTCTCTCGGCCGATTGAAGATGAGAGCCCATTACGGTATGTGGGCACTTGCAAC---ACCATCAAGGACTTA-------ACTATAAATGTCTGATCTC--GTCTTTTAGTCCTTGCCTGCCTGGCTGTTTTGGTGGCTACCACTGGAGCCGCCAACATA---------------------CGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCACTGGAGCCGCCAAC...........................2111.001000010
droGri2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTACAGTCCTTGCCTGCCTGGCTCTTCTGGTGGCCACCACCAGTGCTGCCAATATA---------------------AGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:44 PM