ID:

dan_539

 Coordinate:

scaffold_12916:5061913-5062063 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.1 -10.7 -10.7 -10.5

Flybase annnotation

exon [dana_GLEANR_15477:3]; CDS [Dana\GF14713-cds]; intron [Dana\GF14713-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGCAATTGAGTCAGTTTTATATGACTGTTCAGTGCAAGAGGAGATTTTATTTGAAATGCACTTGTCGCACTTGTTACTGGTTTTTCTTCCACTTTCATGTCTTTGCGACTCCGTATTCGATCGTATTGGCGATGGATACTACTTTATTGAAAGTGAGAACCTCGTGAGTAAAATGCAATATTTGAATTTCAAAACATTAGAACAATTTTGAATGTGCAGAGTGAGCATTACTACGACTGGTTCTTCGCCA
******************************************************************......((((.......................(((..(((((...((....)).)))))..)))))))******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M044
female body
 V106
head
 V055
head
 M058
embryo
 V039
embryo
...................................................................................................................ATTCGATCGTATTGGCGATG.................................................................................................................... 20 0 1 10.00 10 7 1 2 0 0 0
...................................................................................................................ATTCGATCGTATTGGCGATGGAT................................................................................................................. 23 0 1 4.00 4 4 0 0 0 0 0
...........................GTTCAGTGCAAGAGGAGATT............................................................................................................................................................................................................ 20 0 1 3.00 3 3 0 0 0 0 0
.......................GACTGTTCAGTGCAAGAGGA................................................................................................................................................................................................................ 20 0 1 3.00 3 3 0 0 0 0 0
................................................................................................CATGTCTTTGCGACTCCGTATTCGATC................................................................................................................................ 27 0 1 3.00 3 1 2 0 0 0 0
..............................................................................................TTCATGTCTTTGCGACTCCGTATTCGATC................................................................................................................................ 29 0 1 3.00 3 0 3 0 0 0 0
...................................................................................................................ATTCGATCGTATTGGCGATGGATA................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0
...........................GTTCAGTGCAAGAGGAGAT............................................................................................................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0
...............................................................................................................................................................................................................................GAGCATTACTACGACTGGTT........ 20 0 1 2.00 2 0 2 0 0 0 0
..................................................................CGCACTTGTTACTGGTTTTTCTTCCACT............................................................................................................................................................. 28 0 1 2.00 2 0 2 0 0 0 0
..................................GCAAGAGGAGATTTTATTTGA.................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 1 0 0
................TTTATATGACTGTTCAGTGCAAGAGGA................................................................................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................ATTCGATCGTATTGGCGATGGA.................................................................................................................. 22 0 1 2.00 2 0 0 1 0 1 0
...................................................................................................................ATTCGATCGTATTGGCGATGG................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0
...................ATATGACTGTTCAGTGCAAGAGGA................................................................................................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................GTATTCGATCGTGTTGGCGATGGAT................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................GGATTCGATCGTATTGGCGATGG................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................CATGTCTTGGCGACTCCGTATTC.................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................GATCGTATTGGCGATGGA.................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0
...........................GTTCAGTGCAAGAGGAGATTT........................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.......................GACTGTTCAGTGCAAGAGGAGATT............................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
...............................................TTATTTGAAATGCACTTGTCGCACTT.................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................GTATTCGATCGTATTGGCGATGGAT................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................ATGGATACTACTTTATTGAAAGTGAGA............................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................GTGAGCATTACTACGACTGGT......... 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................CATGTCTTTGCGACTCCGT........................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0
........................................................ATGCACTTGTCGCACTTGTTACT............................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................TTATTGAAAGTGAGAACCTCAGT.................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
...........................GTTCAGTGCAAGAGGAGATTTTATTT...................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................ATTACTACGACTGGTTCTTCGT.. 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................GTTACTGGTTTTTCTTCCACT............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...................ATATGACTGTTCAGTGCAAGAGG................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
.......................GACTGTTCAGTGCAAGAGGAGA.............................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................TTGAATGTGCAGAGTGAGC........................ 19 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................ATTCGATCGCATTGGCGAT..................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
...........................GTTCAGTGCAAGAGGAGATTTT.......................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.........................CTGTTCAGTGCAAGAGGAGAT............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................CGATCGTATTGGCGATGGATACTAC............................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................TTTCATGTCTTTGCGACTCCGT........................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................ATTCGATCGTATTGGCGAT..................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
................TTTATATGACTGTTCAGTGCAAGATGA................................................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................ATTACTACGACTTGTTCTTCG... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................AGTGAGCATTGCTACGACTGG.......... 21 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................TCATGTCTTTGCGACTCCGTATTCGATC................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0
.....................ATGACTGTTCAGAGCAAGAGG................................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................GTATTCGATCGTATTGGCGATG.................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................................TTTTTCTTCCACTTTCATGTCTTTGC................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................AGTGAGCATTACTACGACTG........... 20 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................GTATTCGATCGTATTGGCG....................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................GACTCCGTATTCGATCGTATTGGCGAT..................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.................................................ATTTGAAATGCACTTGTCGC...................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................TTCATGTCTTTGCGACTCCGT........................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
........................................GGAGATTTTATTTGAAATGCACTTGTCGC...................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................GACTCCGTATTCGATCGTATTGGC........................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
...............................AGTGCAAGAGGAGATTTTATTTG..................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
........................ACTGTTCAGTGCAAGAGG................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................TTTATTGAAAGTGAGAACCTCAG..................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................TCATGTCTCTGCGACTCCGTATTCGATC................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0
.......................................................AATGCACTTGTCGCACTTGTTACTGGTT........................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................GATGGATACTACTTTATTGAA................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
................................................................................................CATGTCTTTGCGACTCCGTATTCGAT................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................TATTGAAAGTGAGAACCTCAGT.................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................................................................................CCTCAGTGAGCATTACTACGA.............. 21 3 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................TATTGAAAGTGAGAACCTCAAT.................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..........................................................................TTACTGCTTTTTCTGCCACTT............................................................................................................................................................ 21 2 3 0.33 1 0 0 0 1 0 0
.....................................................................................................................................................AAAAGTGAGAACCTCGTGC................................................................................... 19 2 6 0.17 1 0 0 0 0 0 1
.................................................ATTTGAGATGCACTTGGC........................................................................................................................................................................................ 18 2 13 0.08 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................GAGTGAGCAATCCCACGAC............. 19 3 13 0.08 1 0 0 0 1 0 0
...........................................AATTTGATTTGAAATGCAC............................................................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 1 0
..................................................................................................................................................................TGGTGAGTAAAATGTAGTA...................................................................... 19 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

AGCGTTAACTCAGTCAAAATATACTGACAAGTCACGTTCTCCTCTAAAATAAACTTTACGTGAACAGCGTGAACAATGACCAAAAAGAAGGTGAAAGTACAGAAACGCTGAGGCATAAGCTAGCATAACCGCTACCTATGATGAAATAACTTTCACTCTTGGAGCACTCATTTTACGTTATAAACTTAAAGTTTTGTAATCTTGTTAAAACTTACACGTCTCACTCGTAATGATGCTGACCAAGAAGCGGT
********************************************************************************************************************......((((.......................(((..(((((...((....)).)))))..)))))))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M044
female body
 M058
embryo
 V055
head
 V039
embryo
.GCGTTAACTCCGTCAAAATAT..................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................TACACGTCTCACTCGTAATGA.................. 21 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................ACCCCAACCAATGATGAAAT........................................................................................................ 20 3 6 0.17 1 0 0 1 0 0
..........................................................................................................................ACATAACCCCTACCTATTAT............................................................................................................. 20 3 9 0.11 1 0 0 1 0 0
....................................................................GTGATCAATGACGAAAATGA................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 1 0
..............................................................................................................................................GTCGTAACTTTCACTCTTGG......................................................................................... 20 3 11 0.09 1 0 0 0 0 1
...............................................................................................................................ACCCCTACGAATGATGAAAT........................................................................................................ 20 3 11 0.09 1 0 0 1 0 0
...................................................................................AAAGAAGGAGAGAGAACAGAAA.................................................................................................................................................. 22 3 17 0.06 1 1 0 0 0 0
................................................................................AAAAAAGAAGGAGAAAGTAAAGA.................................................................................................................................................... 23 3 20 0.05 1 1 0 0 0 0
......................................................................AAACCATGACCAAAAAGAAT................................................................................................................................................................. 20 3 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:5061863-5062113 - dan_539 TCGCAAT---------------------TGAGTCAGTTTTATATGACTGTTCAGTGCAAGAGGAGATTTTATTTGAAATGCACTTGTCGCACTTGTTACTGGTTTTTCTTCCACTTTCATGTCTTTGCGACTCCGTATTCGATCGTATTGGCGATGGATACTACTTTATTGAAAGTGAGAACCTCGTGAGTAAAATGCA----------------------A------TATTTGAATTTCAAAACATTAGAACAATT-----TTGAA------------TG--TGCAGAGTGAGCATTACTACGACTGGTTCTTCGCCA
droBip1 scf7180000396366:160935-161185 - AAA--AA---------------------CGATTCAGTTTTGTAAGACTGTTCGG-GAAAGAACAACCT-T--ATAAAATGAAATCGTCAATTT--TTTTC-ATTTTTCTCCCACTTTCCTGTTTTTGCGACTCCGTTTTCGATCGAATCGGCAATGGATACTATTTTATAGAAAGTGAGCACATTGTGAGTTAAAAGTTAATTAATTCCTTCTAATAAATTC------TGAAA-------------------TTAAT-----------TAAAAAGCTTAAC--CCCAGGATGAGCATTATTTTGACTGGTTCTTCGCCA
droKik1 scf7180000302684:978924-978975 + ATTCG---------------------------------------------------------------------------------------------------------------------------------GTTTTTGAGAAGATTGGTGATGGCTATTACTTTATAGGCAGTGAAAA------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454003:254013-254101 - G------------------------------------------------------------------------------------------------------------------------------TGAAACTGTGTTTGATCGGATCGGCGATGGATACTATTTTATAGGCAATGAAAAATCTGTTAGTTA------------------------------------------------CAATA-----------TTTGCCTAAAATCA------------------------A---------------------AA
droEle1 scf7180000491046:3619290-3619361 - TGTCG-----------------------------------------------------------------------------------------------------------------------AAGTGAGCCTTTGTTCGATCGGATCGGCAATGGCTATTACTATATCGGCAATGAAAAGACTGTGAGT--------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000759801:873-971 - CTTT-------------------------------------------------------------------------------------------TCACT-GTTTGTCTATTAGCTTTCTGCAGAAGCGAGCCTGTTTTCGATCGGATCGGCGATGGTTACTACTATATAGGGAGTGAAAAGACAGTGAGT--------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302422:4279309-4279362 - T-----------------------------------------------------------------------------------------------------------------------------------------TCGATCGAATCGGAGACGGTCATTACTTTATAGGCAACGAGAAGACAGTAAGT--------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414060:916-1036 + TATTTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAATA----AGTCGAAAACAAAACACG----------------------ATTTTAATATCTTAAATTTTAATAT-----------TATATTTTAATTCTTTTCTTTTTTCCCACAGGCGGGTCACTATTTTGATTGGTTCGTCGCGA
droEug1 scf7180000409463:1675347-1675379 + A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGGTCACTACTTCGACTGGTTTGTTGCGA
dp5 4_group4:6134464-6134654 - dps_1695 TTTCAAT------------------------------------------------------------------------------------TT--TATGC-CTTTGCCTGTTGGCGGTTTGGCAGAGTGAGGCCACGTTCGATCTGGTCGGCAAAGGGCTCTACTATATAGGCAATGAAGATGGCGTAAGTGGAATATA----------------------G------GAAAGGGAATTCAAAGGC-----------TTCACCTAAAATCGTTTCAATCGT--TTCAGACTTTAAGAAACTGTGACTGGTTTCATTCGA
droPer2 scaffold_16:760355-760545 + TTTCAAT------------------------------------------------------------------------------------TT--TATGC-CTTTGCCTGTTGGCGGTTTGGCAGAGTGAGGCCACGTTCGATCTGGTCGGCAAAGGGCTCTACTATATAGGCAATGAAGATGGCGTAAGTGGAATATA----------------------G------AAAAGGGAATTCAAAGGC-----------TTCACCTAAAATCGTTTCAATCGT--TTCAGACTTTAAGAAACTGTGACTGGTTTCTTTCGA
droWil2 scf2_1100000004516:92460-92570 - TTATTGGGAGCGAAAAGAACTTTGAAGA---------------------------------------------------------------AA--CTGTA------------------------------------------------------------CTTATTTTTAAACATTTTTAA---------------------------------------------------A-------------------CAAGT-----------TTGATACTATTTT--TACAGGATAACAGATATTTTGACTGGTTTATGGCAA
droMoj3 scaffold_6473:1154413-1154430 + CGTTTAG------------------------------------------------------------------------------------TT--AATTT------------------------------------------------------------------TA-----------------------------------------------------------------------------------------------------------------------------------------------------TA
droGri2 scaffold_8469:868-953 - TTGTGTT------------------------------------------------------------------------------------TG--TGTCG-CTTGGATTTATGTTTATCCAAATAAGCGCGGCATTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------AAAGTAATAGTTGCGATTGCTGCTGTTTTTCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCGCAAT---------------------TGAGTCAGTTTTATATGACTGTTCAGTGCAAGAGGAGATTTTATTTGAAATGCACTTGTCGCACTTGTTACTGGTTTTTCTTCCACTTTCATGTCTTTGCGACTCCGTATTCGATCGTATTGGCGATGGATACTACTTTATTGAAAGTGAGAACCTCGTGAGTAAAATGCA----------------------A------TATTTGAATTTCAAAACATTAGAACAATT-----TTGAA------------TG--TGCAGAGTGAGCATTACTACGACTGGTTCTTCGCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................ATTCGATCGTATTGGCGATG...................................................................................................................................................................20110.0010100072
........................................................................................................................................ATTCGATCGTATTGGCGATGGAT................................................................................................................................................................2314.004000040
................................................GTTCAGTGCAAGAGGAGATT...........................................................................................................................................................................................................................................................2013.003000030
............................................GACTGTTCAGTGCAAGAGGA...............................................................................................................................................................................................................................................................2013.003000030
.....................................................................................................................CATGTCTTTGCGACTCCGTATTCGATC...............................................................................................................................................................................2713.003200010
...................................................................................................................TTCATGTCTTTGCGACTCCGTATTCGATC...............................................................................................................................................................................2913.003300000
........................................................................................................................................ATTCGATCGTATTGGCGATGGATA...............................................................................................................................................................2412.002000020
................................................GTTCAGTGCAAGAGGAGAT............................................................................................................................................................................................................................................................1912.002000020
...................................................................................................................................................................................................................................................................................................GAGCATTACTACGACTGGTT........2012.002200000
.......................................................................................CGCACTTGTTACTGGTTTTTCTTCCACT............................................................................................................................................................................................................2812.002200000
.......................................................GCAAGAGGAGATTTTATTTGA...................................................................................................................................................................................................................................................2112.002000110
.....................................TTTATATGACTGTTCAGTGCAAGAGGA...............................................................................................................................................................................................................................................................2712.002000020
........................................................................................................................................ATTCGATCGTATTGGCGATGGA.................................................................................................................................................................2212.002010001
........................................................................................................................................ATTCGATCGTATTGGCGATGG..................................................................................................................................................................2112.002100010
........................................ATATGACTGTTCAGTGCAAGAGGA...............................................................................................................................................................................................................................................................2412.002000020
............................................................................................................................................GATCGTATTGGCGATGGA.................................................................................................................................................................1811.001100000
................................................GTTCAGTGCAAGAGGAGATTT..........................................................................................................................................................................................................................................................2111.001000010
............................................GACTGTTCAGTGCAAGAGGAGATT...........................................................................................................................................................................................................................................................2411.001000010
....................................................................TTATTTGAAATGCACTTGTCGCACTT.................................................................................................................................................................................................................................2611.001100000
......................................................................................................................................GTATTCGATCGTATTGGCGATGGAT................................................................................................................................................................2511.001000010
.........................................................................................................................................................ATGGATACTACTTTATTGAAAGTGAGA...........................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................GTGAGCATTACTACGACTGGT.........2111.001000010
.....................................................................................................................CATGTCTTTGCGACTCCGT.......................................................................................................................................................................................1911.001100000
.............................................................................ATGCACTTGTCGCACTTGTTACT...........................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................TTATTGAAAGTGAGAACCTCAGT...................................................................................................................................2311.001000010
................................................GTTCAGTGCAAGAGGAGATTTTATTT.....................................................................................................................................................................................................................................................2611.001000010
.......................................................................................................................................................................................................................................................................................................ATTACTACGACTGGTTCTTCGT..2211.001000010
..............................................................................................GTTACTGGTTTTTCTTCCACT............................................................................................................................................................................................................2111.001000010
........................................ATATGACTGTTCAGTGCAAGAGG................................................................................................................................................................................................................................................................2311.001000010
............................................GACTGTTCAGTGCAAGAGGAGA.............................................................................................................................................................................................................................................................2211.001000010
......................................................................................................................................................................................................................................................................TTGAA------------TG--TGCAGAGTGAGC........................1911.001000010
................................................GTTCAGTGCAAGAGGAGATTTT.........................................................................................................................................................................................................................................................2211.001000010
..............................................CTGTTCAGTGCAAGAGGAGAT............................................................................................................................................................................................................................................................2111.001000010
...........................................................................................................................................CGATCGTATTGGCGATGGATACTAC...........................................................................................................................................................2511.001100000
..................................................................................................................TTTCATGTCTTTGCGACTCCGT.......................................................................................................................................................................................2211.001000010
........................................................................................................................................ATTCGATCGTATTGGCGAT....................................................................................................................................................................1911.001000010
....................................................................................................................TCATGTCTTTGCGACTCCGTATTCGATC...............................................................................................................................................................................2811.001100000
......................................................................................................................................GTATTCGATCGTATTGGCGATG...................................................................................................................................................................2211.001000010
......................................................................................................TTTTTCTTCCACTTTCATGTCTTTGC...............................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................AGTGAGCATTACTACGACTG...........2011.001100000
......................................................................................................................................GTATTCGATCGTATTGGCG......................................................................................................................................................................1911.001000010
................................................................................................................................GACTCCGTATTCGATCGTATTGGCGAT....................................................................................................................................................................2711.001000010
......................................................................ATTTGAAATGCACTTGTCGC.....................................................................................................................................................................................................................................2011.001100000
...................................................................................................................TTCATGTCTTTGCGACTCCGT.......................................................................................................................................................................................2111.001000010
.............................................................GGAGATTTTATTTGAAATGCACTTGTCGC.....................................................................................................................................................................................................................................2911.001100000
................................................................................................................................GACTCCGTATTCGATCGTATTGGC.......................................................................................................................................................................2411.001000010
....................................................AGTGCAAGAGGAGATTTTATTTG....................................................................................................................................................................................................................................................2311.001100000
.............................................ACTGTTCAGTGCAAGAGG................................................................................................................................................................................................................................................................1811.001100000
....................................................................................................................................................................TTTATTGAAAGTGAGAACCTCAG....................................................................................................................................2311.001100000
............................................................................AATGCACTTGTCGCACTTGTTACTGGTT.......................................................................................................................................................................................................................2811.001100000
........................................................................................................................................................GATGGATACTACTTTATTGAA..................................................................................................................................................2111.001100000
.....................................................................................................................CATGTCTTTGCGACTCCGTATTCGAT................................................................................................................................................................................2611.001000010
......................................................................................................................................................................TATTGAAAGTGAGAACCTCAGT...................................................................................................................................2220.501000010
......................................................................................................................................................................TATTGAAAGTGAGAACCTCAAT...................................................................................................................................2220.501000010
droBip1
AAA--AA---------------------CGATTCAGTTTTGTAAGACTGTTCGG-GAAAGAACAACCT-T--ATAAAATGAAATCGTCAATTT--TTTTC-ATTTTTCTCCCACTTTCCTGTTTTTGCGACTCCGTTTTCGATCGAATCGGCAATGGATACTATTTTATAGAAAGTGAGCACATTGTGAGTTAAAAGTTAATTAATTCCTTCTAATAAATTC------TGAAA-------------------TTAAT-----------TAAAAAGCTTAAC--CCCAGGATGAGCATTATTTTGACTGGTTCTTCGCCASizeHit CountTotal NormTotal
No Reads
droKik1
ATTCG---------------------------------------------------------------------------------------------------------------------------------GTTTTTGAGAAGATTGGTGATGGCTATTACTTTATAGGCAGTGAAAA------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
G------------------------------------------------------------------------------------------------------------------------------TGAAACTGTGTTTGATCGGATCGGCGATGGATACTATTTTATAGGCAATGAAAAATCTGTTAGTTA------------------------------------------------CAATA-----------TTTGCCTAAAATCA------------------------A---------------------AASizeHit CountTotal NormTotal
No Reads
droEle1
TGTCG-----------------------------------------------------------------------------------------------------------------------AAGTGAGCCTTTGTTCGATCGGATCGGCAATGGCTATTACTATATCGGCAATGAAAAGACTGTGAGT--------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTTT-------------------------------------------------------------------------------------------TCACT-GTTTGTCTATTAGCTTTCTGCAGAAGCGAGCCTGTTTTCGATCGGATCGGCGATGGTTACTACTATATAGGGAGTGAAAAGACAGTGAGT--------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
T-----------------------------------------------------------------------------------------------------------------------------------------TCGATCGAATCGGAGACGGTCATTACTTTATAGGCAACGAGAAGACAGTAAGT--------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TATTTGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAATA----AGTCGAAAACAAAACACG----------------------ATTTTAATATCTTAAATTTTAATAT-----------TATATTTTAATTCTTTTCTTTTTTCCCACAGGCGGGTCACTATTTTGATTGGTTCGTCGCGASizeHit CountTotal NormTotal
No Reads
droEug1
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTGGTCACTACTTCGACTGGTTTGTTGCGASizeHit CountTotal NormTotal
No Reads
dp5
TTTCAAT------------------------------------------------------------------------------------TT--TATGC-CTTTGCCTGTTGGCGGTTTGGCAGAGTGAGGCCACGTTCGATCTGGTCGGCAAAGGGCTCTACTATATAGGCAATGAAGATGGCGTAAGTGGAATATA----------------------G------GAAAGGGAATTCAAAGGC-----------TTCACCTAAAATCGTTTCAATCGT--TTCAGACTTTAAGAAACTGTGACTGGTTTCATTCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................CTTTAAGAAACTGTGACTGGT.........2117.0070700000000
................................................................................................................................................................................................................................................................................................ACTTTAAGAAACTGTGACTGGT.........2217.0071600000000
.......................................................................................................................................................................ATAGGCAATGAAGATGGC......................................................................................................................................1816.0060600000000
..............................................................................................................................GTGAGGCCACGTTCGATCTG.............................................................................................................................................................................2014.0040400000000
...................................................................................................................................................................................................................................................................................................TTAAGAAACTGTGACTGGTTT.......2114.0040400000000
..............................................................................................................................GTGAGGCCACGTTCGATCTGGTC..........................................................................................................................................................................2314.0040400000000
.............................................................................................................................................ATCTGGTCGGCAAAGGGCT...............................................................................................................................................................1913.0030200001000
.....................................................................................................................................................................ATATAGGCAATGAAGATGGC......................................................................................................................................2013.0031200000000
..............................................................................................................................GTGAGGCCACGTTCGATCTGGTCGGC.......................................................................................................................................................................2613.0030300000000
...........................................................................................................CTGTTGGCGGTTTGGCAGA.................................................................................................................................................................................................1912.0020200000000
........................................................................................................................................................AAAGGGCTCTACTATATAGGC..................................................................................................................................................2112.0020200000000
.............................................................................................................GTTGGCGGTTTGGCAGAGTGAGG...........................................................................................................................................................................................2312.0020200000000
................................................................................................................................................................................................................................................................................................ACTTTAAGAAACTGTGACTGG..........2112.0020200000000
...................................................................................................................................GCCACGTTCGATCTGGTCGGCAAAGG..................................................................................................................................................................2612.0020200000000
...........................................................................................TT--TATGC-CTTTGCCTGTTGGC............................................................................................................................................................................................................2112.0020200000000
..............................................................................................................................GTGAGGCCACGTTCGATCT..............................................................................................................................................................................1912.0020200000000
................................................................................................................................................................................................................................................................................................ACTTTAAGAAACTGTGACTGGTTT.......2412.0020200000000
.....................................................................................................................................................................ATATAGGCAATGAAGATGGCA.....................................................................................................................................2112.0020200000000
.....................................................................................................................................CACGTTCGATCTGGTCGGC.......................................................................................................................................................................1912.0020200000000
...........................................................................................................................................CGATCTGGTCGGCAAAGGGCT...............................................................................................................................................................2112.0020200000000
...................................................................................................................................GCCACGTTCGATCTGGTCGGC.......................................................................................................................................................................2112.0020200000000
..............................................................................................................................GTGAGGCCACGTTCGATCTGGT...........................................................................................................................................................................2212.0020200000000
........................................................................................................................................GTTCGATCTGGTCGGCAAAG...................................................................................................................................................................2011.0010100000000
..............................................................................................................................................TCTGGTCGGCAAAGGGCTCTACT..........................................................................................................................................................2311.0010100000000
...................................................................................................................................................................CTATATAGGCAATGAAGATGGCA.....................................................................................................................................2311.0010100000000
...........................................................................................................................................CGATCTGGTCGGCAAAGGGCTCT.............................................................................................................................................................2311.0010000001000
...................................................................................................................GGTTTGGCAGAGTGAGGC..........................................................................................................................................................................................1811.0010100000000
..................................................................................................GC-CTTTGCCTGTTGGCGGTTTGGC....................................................................................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................................................................................................ACTTTAAGAAACTGTGACTGGTT........2311.0010100000000
.....................................................................................................................................CACGTTCGATCTGGTCGGT.......................................................................................................................................................................1911.0010100000000
..........................................................................................................................................TCGATCTGGTCGGCAAAGGG.................................................................................................................................................................2011.0010100000000
...........................................................................................................................................CGATCTGGTCGGCAAAGGGCTC..............................................................................................................................................................2211.0010100000000
....AAT------------------------------------------------------------------------------------TT--TATGC-CTTTGCCTGTTG..............................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................TGAGGCCACGTTCGATCTGGT...........................................................................................................................................................................2111.0010100000000
...........................................................................................................CTGTTGGCGGTTTGGCAGAGT...............................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................TTTAAGAAACTGTGACTG...........1811.0010100000000
.................................................................................................................................AGGCCACGTTCGATCTGGT...........................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................................................TTCACCTAAAATCGTTTCAAT.........................................2111.0010100000000
...........................................................................................................................................CGATCTGGTCGGCAAAGGTT................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................ACTTTAAGAAACTGTGACT............1911.0010100000000
...................................................................................................................................................................................................................................................................................................TTAAGAAACTGTGACTGGT.........1911.0010100000000
..........................................................................................................................................................AGGGCTCTACTATATAGGC..................................................................................................................................................1911.0010100000000
....................................................................................................................................CCACGTTCGATCTGGTCGGC.......................................................................................................................................................................2011.0010100000000
...................................................................................................................................GCCACGTTCGATCTGGTC..........................................................................................................................................................................1811.0010100000000
.......................................................................................................................................CGTTCGATCTGGTCGGCAAA....................................................................................................................................................................2011.0010100000000
....................................................................................................................................CCACGTTCGATCTGGTCGGCAAAGG..................................................................................................................................................................2511.0010100000000
...CAAT------------------------------------------------------------------------------------TT--TATGC-CTTTGCCTGTTGGCG...........................................................................................................................................................................................................2611.0010100000000
.................................................................................................................................AGGCCACGTTCGATCTGGTCGGC.......................................................................................................................................................................2311.0010100000000
....................................................................................................................................CCACGTTCGATCTGGTCGGCAAAGGG.................................................................................................................................................................2611.0010100000000
.............................................................................................................GTTGGCGGTTTGGCAGAGTG..............................................................................................................................................................................................2011.0010100000000
............................................................................................................................................GATCTGGTCGGCAAAGGGCT...............................................................................................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................................................................CTTTAAGAAACTGTGACTGGTTTC......2411.0010100000000
........................................................................................................................................GTTCGATCTGGTCGGCAAAGGGCTCTAC...........................................................................................................................................................2811.0010100000000
..............................................................................................................................GTGAGGCCACGTTCGATCTGG............................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................ACTTTAAGAAACTGTGACTG...........2011.0010100000000
..................................................................................................................................................................................................................................................................................................TTTAAGAAACTGTGACTGGTTT.......2211.0010100000000
...............................................................................................TATGC-CTTTGCCTGTTGGCG...........................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................ACGTTCGATCTGGTCGGCAAAGGGCT...............................................................................................................................................................2611.0010100000000
..................................................................................................................CGGTTTGGCAGAGTGAGGTA.........................................................................................................................................................................................2011.0010100000000
............................................................................................................TGTTGGCGGTTTGGCAGAGTGA.............................................................................................................................................................................................2211.0010100000000
...........................................................................................TT--TATGC-CTTTGCCTGTTGG.............................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................GTTCGATCTGGTCGGCAAAGGGCT...............................................................................................................................................................2411.0010100000000
................................................................................................................................................................CTACTATATAGGCAATGAAGATGGCA.....................................................................................................................................2611.0010100000000
...................................................................................................................................................................CTATATAGGCAATGAAGAT.........................................................................................................................................1911.0010100000000
.............................................................................................................................AGTGAGGCCACGTTCGATCT..............................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................CTCTACTATATAGGCAATGAAGATGGC......................................................................................................................................2711.0010100000000
.....................................................................................................................................................................................................................................................................................................AAGAAACTGTGACTGGTTT.......1911.0010100000000
...............................................................................................................................................CTGGTCGGCAAAGGGCTCTACT..........................................................................................................................................................2211.0010000001000
...........................................................................................................CTGTTGGCGGTTTGGCAGAGTGA.............................................................................................................................................................................................2311.0010100000000
.............................................................................................................GTTGGCGGTTTGGCAGAGTGAGGCCAC.......................................................................................................................................................................................2711.0010000001000
.............................................................................................................................AGTGAGGCCACGTTCGATCTGGTCGGCA......................................................................................................................................................................2811.0010100000000
......................................................................................................................................ACGTTCGATCTGGTCGGCAAAGG..................................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................................................................................CCTAAAATCGTTTCAATCGT--T...................................2111.0010000001000
............................................................................................................................................................GGCTCTACTATATAGGCAATGAA............................................................................................................................................2311.0010100000000
...............................................................................................................................................................TCTACTATATAGGCAATGAA............................................................................................................................................2011.0010100000000
.................................................................................................................................AGGCCACGTTCGATCTGGTC..........................................................................................................................................................................2011.0010100000000
........................................................................................................TGCCTGTTGGCGGTTTGGCAGA.................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................................................................................................................G------GAAAGGGAATTCAAAGGC-----------TT............................................................2111.0010100000000
........................................................................................................................................GTTCGATCTGGTCGGCAAAGG..................................................................................................................................................................2111.0010100000000
......................................................................................................TTTGCCTGTTGGCGGTTTGGCA...................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................GGTCGGCAAAGGGCTCTA............................................................................................................................................................1811.0010100000000
.....................................................................................................................................CACGTTCGATCTGGTCGGCAAAGGG.................................................................................................................................................................2511.0010000001000
...................................................................................................................................................................................................................................................................................................TTAAGAAACTGTGACTGGTT........2011.0010100000000
.................................................................................................................................AGGCCACGTTCGATCTGGTCGGCAAAGG..................................................................................................................................................................2811.0010100000000
.............................................................................................................GTTGGCGGTTTGGCAGAGTGAGGC..........................................................................................................................................................................................2411.0010100000000
.............................................................................................................GTTGGCGGTTTGGCAGAGTGAGGCC.........................................................................................................................................................................................2511.0010100000000
.........................................................................................................................................TTCGATCTGGTCGGCAAAGGGCTCT.............................................................................................................................................................2511.0010100000000
............................................................................................................................................GATCTGGTCGGCAAAGGGCTC..............................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................TTTAAGAAACTGTGACTGGT.........2011.0010100000000
................................................................................................................................................................CTACTATATAGGCAATGAAGATGGCACT...................................................................................................................................2811.0010100000000
..................................................................................................................................GGCCACGTTCGATCTGGTCGGC.......................................................................................................................................................................2211.0010100000000
..........................................................................................................................................TCGATCTGGTCGGCAAAGGGCTC..............................................................................................................................................................2311.0010100000000
.................................................................................................................................................................TACTATATAGGCAATGAAGATGGCA.....................................................................................................................................2511.0010100000000
.................................................................................................................................................................................................................................................................................................CTTTAAGAAACTGTGACTGGTTT.......2311.0010100000000
.......................................................................................................................................................................ATAGGCAATGAAGATGGCA.....................................................................................................................................1911.0010100000000
.................................................................................................................................................GGTCGGCAAAGGGCTCTACT..........................................................................................................................................................2011.0010100000000
.......................................................................................................................TGGCAGAGTGAGGCCACGTTC...................................................................................................................................................................................2111.0010100000000
............................................................................................T--TATGC-CTTTGCCTGTTGGC............................................................................................................................................................................................................2011.0010100000000
..................................................................................................................CGGTTTGGCAGAGTGAGGC..........................................................................................................................................................................................1911.0010100000000
...........................................................................................TT--TATGC-CTTTGCCTGTTGGCGGTT........................................................................................................................................................................................................2511.0010100000000
.......................................................................................................................................................................ATAGGCAATGAAGATGGCACT...................................................................................................................................2120.5010000001000
droPer2
TTTCAAT------------------------------------------------------------------------------------TT--TATGC-CTTTGCCTGTTGGCGGTTTGGCAGAGTGAGGCCACGTTCGATCTGGTCGGCAAAGGGCTCTACTATATAGGCAATGAAGATGGCGTAAGTGGAATATA----------------------G------AAAAGGGAATTCAAAGGC-----------TTCACCTAAAATCGTTTCAATCGT--TTCAGACTTTAAGAAACTGTGACTGGTTTCTTTCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTATTGGGAGCGAAAAGAACTTTGAAGA---------------------------------------------------------------AA--CTGTA------------------------------------------------------------CTTATTTTTAAACATTTTTAA---------------------------------------------------A-------------------CAAGT-----------TTGATACTATTTT--TACAGGATAACAGATATTTTGACTGGTTTATGGCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
TTATTGGGAGCGAAAAGAACT..........................................................................................................................................................................................................................................................................................................2111.00101000
...........GAAAAGAACTTTGAAGA---------------------------------------------------------------AA--CT..............................................................................................................................................................................................................................2111.00100100
.................................................................................................................................................................................................................................................................................................ATAACAGATATTTTGACTG...........1911.00110000
....................................................................................................................................................................................................................................................................................ATTTT--TACAGGATAACAGAT.....................2011.00100100
.................................................................................................................................................................................................................................................................................................ATAACAGATATTTTGACTGGTTTAT.....2511.00101000
...............................................................................................................................................................................................................................................................................ATACTATTTT--TACAGGAT............................1811.00110000
........................................................................................................................................................................................................................................................................................................ATATTTTGACTGGTTTATGGC..2111.00100001
...................................................................................................................................................................................................................................................................................................AACAGATATTTTGACTGGTTTATGGCAA2811.00101000
........................................................................................................................................................................................................................................................................................................ATATTTTGACTGGTTTATGGCAA2311.00100100
...................................................................................................................................................................................................................................................................................................AACAGATATTTTGACTGGTTTATGGC..2611.00101000
droMoj3
CGTTTAG------------------------------------------------------------------------------------TT--AATTT------------------------------------------------------------------TA-----------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTGTGTT------------------------------------------------------------------------------------TG--TGTCG-CTTGGATTTATGTTTATCCAAATAAGCGCGGCATTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------AAAGTAATAGTTGCGATTGCTGCTGTTTTTCTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:37 PM