ID:

dan_53

 Coordinate:

scaffold_13337:7606454-7606516 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.8 -31.8 -31.7

Flybase annnotation

utr5 [utr5_plus_6624]

No Repeatable elements found

Sense Strand Reads

TTTTAATTTTCCTGAGGGTGAAGGATGTTTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAATTTTTAACCATTCGCATTCAACCTTTGGACGGTAGAGATGGTCAGTGAGAAAGCAACCTATACAGAAAACATAATCCAAAAAAAGTG

***********************************...(((.((((.(((.(((((.((((((((.((((((.................)))))))))))))).))))).))).)))).))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 V105

male body		 V106

head

 M044

female body

 V055

head

 V039

embryo
..................................................CATCGTGCAGAGGTTTGAGTGTC.......................................................................................... 23 0 1 158.00 158 85 21 18 13 8 13
..................................................CATCGTGCAGAGGTTTGAGTGT........................................................................................... 22 0 1 149.00 149 13 62 40 12 19 3
..................................................CATCGTGCAGAGGTTTGAGTGTCT......................................................................................... 24 0 1 57.00 57 16 16 13 4 2 6
..................................................CATCGTGCAGAGGTTTGAGTG............................................................................................ 21 0 1 48.00 48 3 21 16 4 2 2
..........................................................................................CATTCAACCTTTGGACGGTAGA................................................... 22 0 1 33.00 33 19 4 1 7 1 1
..................................................CATCGTGCAGAGGTTTGAGT............................................................................................. 20 0 1 12.00 12 1 5 1 2 3 0
....................................................TCGTGCAGAGGTTTGAGTGTCT......................................................................................... 22 0 1 8.00 8 0 0 1 7 0 0
............................................................................................TTCAACCTTTGGACGGTAGAG.................................................. 21 0 1 8.00 8 1 4 0 3 0 0
..................................................CATCGTGCAGAGGTTTGAGTGC........................................................................................... 22 1 1 7.00 7 6 0 0 0 1 0
..................................................CGTCGTGCAGAGGTTTGAGTGTC.......................................................................................... 23 1 1 7.00 7 7 0 0 0 0 0
..........................................................................................CATTCAACCTTTGGACGGTAG.................................................... 21 0 1 6.00 6 1 0 0 4 1 0
..................................................CATCGTGCAGAGGTTTGAGTGTT.......................................................................................... 23 1 1 6.00 6 0 3 2 0 1 0
............................................................................................TTCAACCTTTGGACGGTAGAGT................................................. 22 1 1 5.00 5 2 1 0 1 1 0
..................................................CACCGTGCAGAGGTTTGAGTGTC.......................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0
..................................................CATCGTGCGGAGGTTTGAGTGT........................................................................................... 22 1 1 5.00 5 1 0 0 4 0 0
..................................................CATCGTGCAGAGGTTTTAGTGTC.......................................................................................... 23 1 1 4.00 4 0 0 2 0 0 2
..................................................CATCGTGCAGAGGTTTGAGTGTCC......................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0
.................................................CCATCGTGCAGAGGTTTGAGTGT........................................................................................... 23 0 1 3.00 3 0 1 1 1 0 0
..................................................CATCGTGCAGCGGTTTGAGTGTC.......................................................................................... 23 1 1 3.00 3 2 1 0 0 0 0
...................................................ATCGTGCAGAGGTTTGAGTGTCT......................................................................................... 23 0 1 3.00 3 0 0 3 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTTTC.......................................................................................... 23 1 1 3.00 3 0 0 1 0 0 2
............................................................................................TTCAACCTTTGGACGGTAGAGA................................................. 22 0 1 2.00 2 1 0 1 0 0 0
...................................................ATCGTGCAGAGGTTTGAGTG............................................................................................ 20 0 1 2.00 2 0 1 0 1 0 0
...........................................................................................ATTCAACCTTTGGACGGTAGA................................................... 21 0 1 2.00 2 1 0 0 1 0 0
..................................................CATCGTGCAGAGGTTTGAGTT............................................................................................ 21 1 1 2.00 2 0 1 0 0 0 1
..................................................CATCGTGCAGAGGTTAGAGTGT........................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGTT.......................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0
..................................................CATCGGGCAGAGGTTTGAGTGTC.......................................................................................... 23 1 1 2.00 2 0 0 0 0 1 1
..................................................CATCGTGCAGAGGTTTGAGGGTC.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTCTC.......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGAGTCT......................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TTCAACCTATAGACGGTAGAGT................................................. 22 3 1 1.00 1 0 1 0 0 0 0
....................................................TCGTGCAGAGGTTTGAGTGTC.......................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1
..................................................AATCGTGCAGAGGTTTGAGTGT........................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
...................................................ATCGTGCAGAGGTTTGAGTGTC.......................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0
..................................................CAGCGGGCAGAGGTTTGAGTGTG.......................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1
..................................................CATCGTTCAGAGGTTTGCGTG............................................................................................ 21 2 1 1.00 1 0 0 0 0 1 0
............................................................................................TTCAACCTTTGAACGGTAGAGT................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................................TGGTAAGTGAGAAAGCAAGC............................. 20 2 1 1.00 1 0 0 0 0 1 0
............................................................................................TTCAACCTTTGGACGGTAGA................................................... 20 0 1 1.00 1 0 0 0 0 1 0
............................................................................................TTCAACCTTTGGACGATAGAGA................................................. 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................ATTCAACCTTTGGACAGTAGA................................................... 21 1 1 1.00 1 0 0 0 1 0 0
..................................................CATCGTGCAGAGGTTTGAAGGTC.......................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1
...................................................AGCGTTCAGAGGTTTGAGTGTCT......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAG.............................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCCGAGGTTTGAGTG............................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTTT......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
..................................................CTTTGTGCAGAGGTTTGAGTGTC.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCATAGGTTTTAGTGTC.......................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1
..........................................................................................CGTTCAACCTTTGGACGGTAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................AATCGTGCAGAGGTTTGAGTG............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCAGCGGTTTGAGTATC.......................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCAGAGGTTCGAGTGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCACGGGTTTGAGTG............................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCAGTGGTTTGTGTGT........................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0
..................................................CATCGTGCAGAGCTTTGAGTG............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGCGCAGAGGTTTGAGTGT........................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
..................................................GATCGTGCAGAGGTTTGAG.............................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CATTCAACCTTTGGGCGGTAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGCTTGAGTGT........................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1
..................................................CATCGTGCAGAGCTTTGAGTGT........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTTCAGAGGTTTGAGTGTC.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TCAACCTTTGGACGGTAGAG.................................................. 20 0 1 1.00 1 0 0 0 1 0 0
..................................................CATCGTGCAGAGTTTTGAGTGTC.......................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1
........................................................................................CGCATTCAACCTTTGGACGGTAGTT.................................................. 25 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATTCAACCTTTGGACGGTAGAGT................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CATACAACCTTTGGACGGTAGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................CGCATTCAACCTTTGGACGGTAG.................................................... 23 0 1 1.00 1 0 0 0 0 0 1
..................................................CATCGTGCATAGGTTTGAGTGTC.......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.................................................CCATCGTGCAGAGGTTTGAGT............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................................TTCAACCTTTGGAAGGTAGAG.................................................. 21 1 1 1.00 1 0 0 1 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTA............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCATAGGTTTGAGTGT........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................ATTCAACCTTTGGGCGGTAGAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGCTTGAGTGTCT......................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0
..................................................CACCGTGCAGAGGTTTGAGTGTCT......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTATC.......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................CATTCAACCTTTGGACGGTAGT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTTAGT............................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0
..................................................CATCGTGCAGAGGTTGGAGTGT........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................TTTTTGAGAAGCTCATCAGCTC................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..................................................CCTCGTGCAGAGGTTTGAGT............................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0
..................................................AATGGTGCAGAGGTTTGAGTGT........................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0
..................................................CATCGTGCAGAGTTTTTAGTCTC.......................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1
..................................................CATCGCGCAGAGGTTTGAGTG............................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0
..................................................GATCGTGCAGAGGTTTGAGTGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAT.............................................................................................. 19 1 1 1.00 1 0 0 1 0 0 0
.................................................CTATCGTGCAGAGGTTTGAGTGTC.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGCGCACAGGTTTCAGTG............................................................................................ 21 3 1 1.00 1 0 0 0 0 1 0
..................................................CATCGTTCAGAGGTTTGAGTGT........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCTTGCATAGGTTTGAGTGT........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGCGT........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGGGCAGAGGTTTGAGTGT........................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
..................................................CGTCGTGCAGAGGATTAAGTGT........................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0
..................................................CATCGTGCAGAGACTTGGGTGT........................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0
...................................................ATCGTGCAGAGGTTTGAGTGTCA......................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCAGAAGTTTGAGTGTCT......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CATTCAACCTTTGTACGATAGA................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..................................................CATTGTGCAGAGGTTTGAGTT............................................................................................ 21 2 1 1.00 1 0 0 1 0 0 0
..................................................CATCGTGCAGAGGTTTGTGTGTC.......................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1
..................................................CATCGTGCAGAGGTTTAAGTGTC.......................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1
.................................................TCATCGTGCAGAGGTTTGAGTG............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................CGTTCAACCTTTGGACGGTAG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATTCAACCTTTGGACGGTAGAG.................................................. 22 0 1 1.00 1 0 0 0 1 0 0
..................................................CATCGTGCAGAGGTTTGAGTGG........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGTC.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTTTCT......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CATTCAACCTTTGGACGGTGGA................................................... 22 1 1 1.00 1 0 0 0 0 1 0
..................................................CATCGTGCGGAGGTTTGAGTGTC.......................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTCTA........................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1
....................................................TCGTGCGGAGGTTTGAGTGTCT......................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0
..................................................CATCGTGCAGAGGTTTTGGT............................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0
..................................................CATAGTGCAGAGGTTTGAGTGTCT......................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
..................................................CATCGTGCAGAGGTTTGAGGGAC.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGATTTGAGTGTCT......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTCAACCTTTGGACGGTAGTTT................................................. 22 3 1 1.00 1 0 0 0 1 0 0
..................................................CAACGTGCAGAGGTTTGAGCGT........................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................CATTCAACATTTGGACGGTAGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..................................................CATTGTGCAGAGGTTTGAGTGTC.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGTGTGGT.......................................................................................... 23 3 2 0.50 1 0 0 0 0 0 1
..................................................CATAGTGCAGAGCTATGAGTGT........................................................................................... 22 3 2 0.50 1 0 0 0 0 1 0
..................................................CATCGTGCAACCGTTTGAGTGT........................................................................................... 22 3 3 0.33 1 0 0 0 0 1 0
..........................................................................................CATTCAACCTTTGGACGGTTTT................................................... 22 3 3 0.33 1 0 0 0 1 0 0
....................................................CATTGCAGAGGTTTGAGTGTC.......................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
............TGAGGGAGAAGGTTGTTTTGT.................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 1 0
..........CCTCCGGGTGAAGTATGTT...................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 1 0
............................................................................................................................................GAAAACAGAATCAAAAAAAGGT. 22 3 17 0.06 1 1 0 0 0 0 0
......................................................................................................................................TATACAGCAAACATTATGC.......... 19 3 20 0.05 1 0 0 0 0 0 1
.........................................CATCAGCTCCACCGACCAGA...................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

AAAATTAAAAGGACTCCCACTTCCTACAAAAAACTCTTCGAGTAGTCGAGGTAGCACGTCTCCAAACTCACAGATTAAAAATTGGTAAGCGTAAGTTGGAAACCTGCCATCTCTACCAGTCACTCTTTCGTTGGATATGTCTTTTGTATTAGGTTTTTTTCAC

************************************...(((.((((.(((.(((((.((((((((.((((((.................)))))))))))))).))))).))).)))).))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V106

head

 V039

embryo

 V055

head

 M058

embryo

 V105

male body
......................................................................CAGCTTAAAATTTGGCAAGC......................................................................... 20 3 6 0.17 1 0 1 0 0 0
.......................................................................AGCTTAAAATTTGGTATGC......................................................................... 19 3 20 0.15 3 2 1 0 0 0
.......................................................................AGATTAAAACTTGGCATGC......................................................................... 19 3 16 0.13 2 2 0 0 0 0
..................................TCTTCGAGTTGTCGAAGTAGA............................................................................................................ 21 3 8 0.13 1 0 0 1 0 0
.......................................................................AGATTCAAAATTGGCATGC......................................................................... 19 3 12 0.08 1 1 0 0 0 0
..............ACCCACCTCCTACAAAAA................................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0
.......................................................................AGATTCAAATTTGGTATGC......................................................................... 19 3 20 0.05 1 1 0 0 0 0
.......................................................................................AGCGTAAGTTACAAACCTTC........................................................ 20 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13337:7606404-7606566 + dan_53 confident TTT--------T----AATTTT-CCTGAG-----------------------G-GT----GA-AGGA------------------------TGTT-TTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTT-TAACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTATACAG---AAAACATAATCCAAAA--AAAGTG
droBip1 scf7180000395543:273546-273695 + TTT--------T----AATTGT-GTTGAA-----------------------G-GT----GA-AGGC-----------------------TGTTT-TTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTA-T---TTTTTAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAAAG---AA----------A------ACTA
droKik1 scf7180000302391:414324-414459 + GCT--------TTG-T---GTA-GC------T-----------------AAAAT-T----GA-ATT-------------------------CGAC-ATTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTA--------------------------------
droFic1 scf7180000454105:1620285-1620426 + ATT-------TTTG-C---TTG-AG--TGGGT-----------------GAAGCA------------------------------------ACCT-TTTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAAT----------------------------A
droEle1 scf7180000491249:1960475-1960651 - AAT----TTGTTTGAC---TTA-GG--TGGGT-----------------AAAATTATTGTGGAAG-GT------------------------ATT-TGTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAAGATCAAAATTACATAAACATA------AAAA
droRho1 scf7180000757703:660-808 - TG--------TTTGAT---TTA-GA--TGGGT-----------------AAAATTAT----------T-----------------ATTTAAAAAT-TTCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAAC----------------------------A
droBia1 scf7180000302428:2658372-2658539 + T---------TTTGCC---TAA-GG--TGGGTAGAATA--------------ATAATTAC---AGGATTTGC------------------TTTTC-GTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACAT--------TAAA---A------ACAT
droTak1 scf7180000415378:64786-64961 - GAT------CTTTGCG---TTAAGG--TGGGT-----------------AGAATAATTAC---AGGGTAT-----------------T--TTTTG-TTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAA---ATTCCTAATTCCTA------AAAA
droEug1 scf7180000409466:1024678-1024842 + CCT--------A----AATTTT-TT-------GGGATTGTAGTTGGGA-----------------TA-----------------------TTTTA-TTTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGACT--------TAATCAAACT--TTAGTT
dm3 chr3L:3299013-3299158 + dme-mir-955 Known_mirbase TG--------TTTGAT---GTA-GG--TG----------------GGGTAAAATAGG----------T-----------------AAGGAACACT-TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTA--------------------------------
droSim2 3l:3195999-3196144 + dsi-mir-955 Known_mirbase TG--------TTTGAT---GTA-GG--TG----------------GGGTAAAATAGG----------T-----------------AAAGAACTCT-TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTA--------------------------------
droSec2 scaffold_2:3291316-3291464 + TG--------TTTGAT---GTA-GG--TG----------------GGGTAAAATAGG----------T-----------------AATAAACACT-TTTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTACAA--------------------------AAA
droYak3 3L:3844721-3844869 + dya_46 confident TG--------TTTGCT---ATA-GG--CGGGT-----------------AAAATAAG----------T-----------------A----------AAGTAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAATG---AGT----------A------TATA
droEre2 scaffold_4784:5981969-5982108 + der_1541 GCT--------AT--------A-AT--TGGGT-----------------AAAATAAG----A-AG----------------------GAATACAC-TTTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTA--------------------------------
droPer2 scaffold_65:53607-53625 - TTC--------A----AAATTT--------------------------------------------------------------------------------CCAGCTGGT----------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004511:10215728-10215849 + dwi_5439 TCA-AATACTTTTGCG---TTA---------------------------------------------------------------------------------AGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTA--------------------------------
droVir3 scaffold_12758:855567-855699 - dvi-mir-955 Known_mirbase ATTAA------A---G---ACA-------GGT-----------------AT------------------------------------GTATGGAT-CTCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAAC-----------------------------
droMoj3 scaffold_6680:1909610-1909750 - dmo_71 confident TCT--------T----ATTTGA-CTCGAA-----------------------T-CT----CA-GGTA-----------------------TCCAA-TAT----GGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTT-TGGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACT-G---A-------------------AAGC
droGri2 scaffold_15110:657026-657196 + dgr_27 candidate-rescued TAA--------A----GA--CA-------GGT-----------------TT-------------------GTTTTTCTTGTAGATGA-AATGGATTTAAT-AAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAAAC---AATC-ACAGTTAAAAGTTAAAGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTT--------T----AATTTT-CCTGAG-----------------------G-GT----GA-AGGA------------------------TGTT-TTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTT-TAACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTATACAG---AAAACATAATCCAAAA--AAAGTGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTC.....................................................................................................231158.0015813851382118
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGT......................................................................................................221149.0014912133196240
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCT....................................................................................................24157.0057416621613
.....................................................................................................................CATCGTGCAGAGGTTTGAGTG.......................................................................................................21148.004843222116
..................................................................................................................................................................CATTCAACCTTTGGACGGTAGA.........................................................22133.00337191141
.....................................................................................................................CATCGTGCAGAGGTTTGAGT........................................................................................................20112.0012210351
.......................................................................................................................TCGTGCAGAGGTTTGAGTGTCT....................................................................................................2218.008700001
....................................................................................................................................................................TTCAACCTTTGGACGGTAGAG........................................................2118.008310040
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGC......................................................................................................2217.007060100
..................................................................................................................................................................CATTCAACCTTTGGACGGTAG..........................................................2116.006410100
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTT.....................................................................................................2316.006000132
....................................................................................................................................................................TTCAACCTTTGGACGGTAGAGT.......................................................2215.005120110
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCC....................................................................................................2413.003030000
....................................................................................................................CCATCGTGCAGAGGTTTGAGTGT......................................................................................................2313.003100011
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCT....................................................................................................2313.003000003
....................................................................................................................................................................TTCAACCTTTGGACGGTAGAGA.......................................................2212.002010001
......................................................................................................................ATCGTGCAGAGGTTTGAGTG.......................................................................................................2012.002100010
...................................................................................................................................................................ATTCAACCTTTGGACGGTAGA.........................................................2112.002110000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTT.......................................................................................................2112.002001010
.......................................................................................................................TCGTGCAGAGGTTTGAGTGTC.....................................................................................................2111.001001000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTC.....................................................................................................2211.001100000
....................................................................................................................................................................TTCAACCTTTGGACGGTAGA.........................................................2011.001000100
.....................................................................................................................CATCGTGCAGAGGTTTGAG.........................................................................................................1911.001000010
.....................................................................................................................................................................TCAACCTTTGGACGGTAGAG........................................................2011.001100000
................................................................................................................................................................CGCATTCAACCTTTGGACGGTAGTT........................................................2511.001010000
...................................................................................................................................................................ATTCAACCTTTGGACGGTAGAGT.......................................................2311.001010000
................................................................................................................................................................CGCATTCAACCTTTGGACGGTAG..........................................................2311.001001000
....................................................................................................................CCATCGTGCAGAGGTTTGAGT........................................................................................................2111.001010000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTA.......................................................................................................2111.001000010
..................................................................................................................................................................CATTCAACCTTTGGACGGTAGT.........................................................2211.001010000
..............................................................................................T-TTTTGAGAAGCTCATCAGCTC............................................................................................................................2211.001010000
.....................................................................................................................CATCGTGCAGAGGTTTGAT.........................................................................................................1911.001000001
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCA....................................................................................................2311.001000010
...................................................................................................................................................................ATTCAACCTTTGGACGGTAGAG........................................................2211.001100000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGG......................................................................................................2211.001000010
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCTA...................................................................................................2511.001001000
....................................................................................................................................................................TTCAACCTTTGGACGGTAGTTT.......................................................2211.001100000
..................................................................................................................................................................CATTCAACCTTTGGACGGTTTT.........................................................2230.331100000
droBip1
TTT--------T----AATTGT-GTTGAA-----------------------G-GT----GA-AGGC-----------------------TGTTT-TTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTA-T---TTTTTAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAAAG---AA----------A------ACTASizeHit CountTotal NormTotal
No Reads
droKik1
GCT--------TTG-T---GTA-GC------T-----------------AAAAT-T----GA-ATT-------------------------CGAC-ATTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTA--------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATT-------TTTG-C---TTG-AG--TGGGT-----------------GAAGCA------------------------------------ACCT-TTTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAAT----------------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
AAT----TTGTTTGAC---TTA-GG--TGGGT-----------------AAAATTATTGTGGAAG-GT------------------------ATT-TGTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAAGATCAAAATTACATAAACATA------AAAASizeHit CountTotal NormTotal
No Reads
droRho1
TG--------TTTGAT---TTA-GA--TGGGT-----------------AAAATTAT----------T-----------------ATTTAAAAAT-TTCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAAC----------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
T---------TTTGCC---TAA-GG--TGGGTAGAATA--------------ATAATTAC---AGGATTTGC------------------TTTTC-GTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACAT--------TAAA---A------ACATSizeHit CountTotal NormTotal
No Reads
droTak1
GAT------CTTTGCG---TTAAGG--TGGGT-----------------AGAATAATTAC---AGGGTAT-----------------T--TTTTG-TTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAA---ATTCCTAATTCCTA------AAAASizeHit CountTotal NormTotal
No Reads
droEug1
CCT--------A----AATTTT-TT-------GGGATTGTAGTTGGGA-----------------TA-----------------------TTTTA-TTTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGACT--------TAATCAAACT--TTAGTTSizeHit CountTotal NormTotal
No Reads
dm3
TG--------TTTGAT---GTA-GG--TG----------------GGGTAAAATAGG----------T-----------------AAGGAACACT-TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTA--------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTC.....................................................................................................2311904.0019040000010016000006000000000001000000003003004212203112200000000000000000000000000000042000559630142171092123200000030128060000000000000000000000000103411153441402000000000002004410080013020001006213390011729000001200000003012843380081011002020000027112711000001001002833503500000004100202111011001011143310910504723200299012140217153410157411065116501571104770
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGT......................................................................................................2211634.001634000001000300000000001014000000000000302200231031110450004300000000000000000000000000000011531052222221188100000011015001020001170100000000000000200003431454021000000000003202002124020800000013590100301352000000400000700137137173031123538002000000015596001000081030001018000020000111001712632633111020001236137118032312271362214060200009200220009200130109396110001020
.....................................................................................................................CATCGTGCAGAGGTTTGAGTG.......................................................................................................211579.00579000000000100000000000002000100000000200110100100200120001100000000000000000000000000000000020010200050000000000000000100010000000000000000001100010112310000000000000020002101020000000000030110001081000000000000000001257614002913110000000051240001000510100140140000000000000001501203021100041442253870027613901911000351110001000102014729104000610
.....................................................................................................................CATCGTGCAGAGGTTTGAGT........................................................................................................201175.00175000000000000000000000001000000000000000000001000000110000100000000000000000000000000000010001010100000000000000000001000000100000000000000000000101008100000000000000010100000000000000000111000000040000000000000000102064004501000000000055000000000000000000010000000000001601030000000232102520025446061000065000000100000112110000000
..................................................................................................................................................................CATTCAATTTCTGAACGGTAGA.........................................................22185.008500000000000000000000000000000000000000000200100000130000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000100000000000000010000000010000000000011000001000000000000000000035100119010000000000915000000000000000000000000000200000101001000000000001600000002000001000000000000001000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAG.........................................................................................................19162.0062000000000000000000000000000000101000000000000010000100000000000000000000000000000000000000000001000000000000000000000000010001000000000000000000000003000000000000000110010000100020000000000100000000000000000000000181100010000000000000000000000000000000000000000000000200102010000003420021000001003200003000000100000021200000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCT....................................................................................................24142.0042000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000000000000000000030000101000000000003000000000001000001000000000000000000000000000001000310000001002000000000000200000332361000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTC.....................................................................................................22126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000003002000000000000000000000000000000000000000000000000010000000000010100000000000000003000000000000000000000000000000000000000000000011000610000000000100000000000100000000110000100
..................................................................................................................................................................CATTCAATTTCTGAACGGTAG..........................................................21121.0021000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000110100020001010000001000000000000000000000000000000021100100000000000000000000000000000000000000000000000011000000000000200000000000000000000000000000000000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGT......................................................................................................21118.0018000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000100000000000000000100000000000000000000000000100000000000000000001100000001000000000000000000000000000000000000000010400000000000000001000000000000001101000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTT.....................................................................................................23116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000002100000000000000000000000000000000010200000000000010100010000102000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGA......................................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000020000000000000000000000000000000000000000000000000000000000000000001000000000000000100000001000000000000110000000010000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTT.......................................................................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000100000010000000000001000000000000000000000000000000000000000000000000000000000000103000000000000000000010000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTG.......................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000002000000000000000000000001000000000000000000000000000000000000000010000000000000000002000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTA.....................................................................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005100000000000000000000000000000000000000000000000010000000000001000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCA....................................................................................................2416.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000200000000000000000010000000000000000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCC....................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGA..........................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000
.........................................................................................................................GTGCAGAGGTTTGAGTGT......................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
...................................................................................................TGGCCAGCTAATCAACTCC...........................................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGG......................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCC....................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000
...................................................................................................TGGCCAGCTAATCAACTC............................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTATC...................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTT.....................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAT.........................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................GTGCAGAGGTTTGAGTGTA.....................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCCT...................................................................................................2412.002000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGT........................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGG........................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGA........................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTG.....................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CATTCAATTTCTGAACGGTAGT.........................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................CATTCAATTTCTGAACGGTAGAA........................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................................................................TTGGCCAGCTAATCAACTC............................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CATTCAATTTCTGAACGGT............................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGAA.......................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTAT....................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTAA......................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCCCCC---..............................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CATTCAATTTCTGAACGGTAGAATC......................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TG--------TTTGAT---GTA-GG--TG----------------GGGTAAAATAGG----------T-----------------AAAGAACTCT-TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTA--------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTC.....................................................................................................231882.008825043613900513339525113
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGT......................................................................................................221171.00171204100126131158413200
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTC.....................................................................................................221162.0016210124003000212910010
..................................................................................................................................................................CATTCAATTTCTGCACGGTAGT.........................................................221110.00110518500020670400000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTG.......................................................................................................21188.00883013022120126001100
...................................................................................................TGGCCAGCTAATCAACTC............................................................................................................................18164.0064006400000000000000
..................................................................................................................................................................CATTCAATTTCTGCACGG.............................................................18151.0051005000100000000000
..................................................................................................................................................................CATTCAATTTCTGCACGGTAGA.........................................................22149.00490014000229501700000
..................................................................................................................................................................CATTCAATTTCTGCACGGTAG..........................................................21137.00370014001123151000000
..................................................................................................TTGGCCAGCTAATCAACTC............................................................................................................................19133.0033003200000000100000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGT......................................................................................................21128.002820800024124401000
...................................................................................................TGGCCAGCTAATCAACTCC...........................................................................................................................19117.001700800100000800000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCC....................................................................................................23114.001410501100000600000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGG......................................................................................................22113.0013201100000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGT........................................................................................................20113.001300000141211300000
.................................................................................................TTTGGCCAGCTAATCAACTC............................................................................................................................20112.0012001200000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAG.........................................................................................................19111.001120602001000000000
..................................................................................................................................................................CATTCAATTTCTGCACGGTAGG.........................................................2218.00810600000000100000
.....................................................................................................................CATCGTGCAGAGGTTTGA..........................................................................................................1816.00600002400000000000
................................................................................................TTTTGGCCAGCTAATCAACTC............................................................................................................................2116.00600600000000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCCTG..................................................................................................2516.00600400000000200000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCT....................................................................................................2315.00500400000000100000
..................................................................................................TTGGCCAGCTAATCAACTCC...........................................................................................................................2015.00500500000000000000
..................................................................................................................................................................CATTCAATTTCTGCACGGTAGC.........................................................2215.00500400000010000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCT....................................................................................................2415.00500300000000200000
..................................................................................................................................................................CATTCAATTTCTGCACGGTAGTT........................................................2314.00400100010110000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGA......................................................................................................2214.00400000022000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCCT...................................................................................................2413.00300200000000100000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGC......................................................................................................2213.00300300000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCC....................................................................................................2413.00300100100010000000
......................................................................................................................ATCGTGCAGAGGTTTGAGT........................................................................................................1913.00300000000003000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTG.....................................................................................................2312.00200000000000200000
.................................................................................................TTTGGCCAGCTAATCAACTCC...........................................................................................................................2112.00200200000000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTT.....................................................................................................2212.00200000000010001000
.......................................................................................................................TCGTGCAGAGGTTTGAGTGTCCT...................................................................................................2312.00200200000000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTG.......................................................................................................2012.00210000100000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCA....................................................................................................2312.00200100000100000000
..................................................................................................................................................................CATTCAATTTCTGCACGGTA...........................................................2011.00100000000001000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGC......................................................................................................2111.00100100000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTT.....................................................................................................2311.00100000000000100000
.....................................................................................................................CATCGTGCAGAGGTTTGT..........................................................................................................1811.00110000000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGA........................................................................................................2011.00100000001000000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGG......................................................................................................2111.00100100000000000000
.....................................................................................................................CATCGTGCAGAGGTTTGC..........................................................................................................1811.00110000000000000000
...................................................................................................................................................................ATTCAATTTCTGCACGGTAGA.........................................................2111.00100000000000100000
.......................................................................................................................TCGTGCAGAGGTTTGAGTGTCC....................................................................................................2211.00100100000000000000
.........................................................................................................................GTGCAGAGGTTTGAGTGTC.....................................................................................................1911.00100000000001000000
.........................................................................................................................GTGCAGAGGTTTGAGT........................................................................................................1611.00100000000001000000
...................................................................................................TGGCCAGCTAATCAACTCCC..........................................................................................................................2011.00100000000000100000
..................................................................................................................................................................CATTCAATTTCTGCACGGTAGTA........................................................2311.00100000000010000000
..........................................................................................ACTCT-TTTTGGCCAGCT.....................................................................................................................................1730.33100000000001000000
droSec2
TG--------TTTGAT---GTA-GG--TG----------------GGGTAAAATAGG----------T-----------------AATAAACACT-TTTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTACAA--------------------------AAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
TG--------TTTGCT---ATA-GG--CGGGT-----------------AAAATAAG----------T-----------------A----------AAGTAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAATG---AGT----------A------TATASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.....................................................................................................................CATCGTGCAGAAGTTTGAGTGTC.....................................................................................................2311520.0015206816121120604150000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTGT......................................................................................................221151.0015127213416812330000
..................................................................................................................................................................CATTCAATTTCTGAACGGTAGA.........................................................22135.0035033020000000
......................................................................................................................ATCGTGCAGAAGTTTGAGTGTCC....................................................................................................23130.0030002910000000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTGTCT....................................................................................................24129.00291221100130000
......................................................................................................................ATCGTGCAGAAGTTTGAGTGTC.....................................................................................................22122.0022121540000000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTGC......................................................................................................22118.0018401200020000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTGTCC....................................................................................................24113.0013101100010000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTG.......................................................................................................2119.00902010150000
......................................................................................................................ATCGTGCAGAAGTTTGAGTGTCT....................................................................................................2315.00531100000000
..................................................................................................................................................................CATTCAATTTCTGAACGGTAGT.........................................................2215.00500500000000
...................................................................................................................................................................ATTCAATTTCTGAACGGTAGAGT.......................................................2314.00420200000000
...................................................................................................TAAACAGCTAATCAACTCC...........................................................................................................................1914.00400310000000
.....................................................................................................................CATCGTGCAGAAGTTTGAGT........................................................................................................2013.00301000020000
.........................................................................................................................GTGCAGAAGTTTGAGTGTC.....................................................................................................1913.00300300000000
....................................................................................................................CCATCGTGCAGAAGTTTGAGTGTC.....................................................................................................2413.00300300000000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTGTT.....................................................................................................2313.00300100020000
.......................................................................................................................TCGTGCAGAAGTTTGAGTGTCCTG..................................................................................................2412.00200110000000
..................................................................................................GTAAACAGCTAATCAACTC............................................................................................................................1912.00200200000000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTGG......................................................................................................2212.00220000000000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTGTG.....................................................................................................2312.00200110000000
......................................................................................................................ATCGTGCAGAAGTTTGAGTGTCCT...................................................................................................2412.00200200000000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTGA......................................................................................................2211.00100000010000
.....................................................................................................................CATCGTGCAGAAGTTTGAGA........................................................................................................2011.00100000100000
.......................................................................................................................TCGTGCAGAAGTTTGAGTGTCCC...................................................................................................2311.00100100000000
.....................................................................................................................CATCGTGCAGAAGTTTGAGC........................................................................................................2011.00100100000000
......................................................................................................................ATCGTGCAGAAGTTTGAGTGTCCTG..................................................................................................2511.00100010000000
...................................................................................................TAAACAGCTAATCAACTC............................................................................................................................1811.00100100000000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTGTCA....................................................................................................2411.00100010000000
......................................................................................................................................................................CAATTTCTGAACGGTAGT.........................................................1811.00100100000000
..................................................................................................................................................................CATTCAATTTCTGAACGGTAGC.........................................................2211.00100100000000
....................................................................................................................................................................TTCAATTTCTGAACGGTAGAGT.......................................................2211.00100100000000
.......................................................................................................................TCGTGCAGAAGTTTGAGTGT......................................................................................................2011.00100100000000
.....................................................................................................................CATCGTGCAGAAGTTTGAGTT.......................................................................................................2111.00100000010000
.....................................................................................................................CATCGTGCAGAAGTTTGAG.........................................................................................................1911.00100100000000
...................................................................................................................................................................ATTCAATTTCTGAACGGTAGA.........................................................2111.00100100000000
....................................................................................................................CCATCGTGCAGAAGTTTGAGTGT......................................................................................................2311.00100010000000
droEre2
GCT--------AT--------A-AT--TGGGT-----------------AAAATAAG----A-AG----------------------GAATACAC-TTTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTA--------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGT......................................................................................................221532.00532401218571852146
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTC.....................................................................................................231411.0041112100122839310
.....................................................................................................................CATCGTGCAGAGGTTTGAGTG.......................................................................................................211293.00293172941731510
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCT....................................................................................................24139.003913168200
.....................................................................................................................CATCGTGCAGAGGTTTGAGT........................................................................................................20135.0035401215130
..................................................................................................................................................................CATTCAATTTCTGAACGGTAGA.........................................................22114.00144502300
......................................................................................................................ATCGTGCAGAGGTTTGAGTGT......................................................................................................21113.00132100730
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTC.....................................................................................................22110.00101200610
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCT....................................................................................................2319.0090402030
.....................................................................................................................CATCGTGCAGAGGTTTGAG.........................................................................................................1918.0080100520
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTT.....................................................................................................2315.0051001210
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGA......................................................................................................2214.0040000220
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTG.....................................................................................................2312.0020001010
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGC......................................................................................................2212.0020200000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCA....................................................................................................2412.0020001010
.......................................................................................................................TCGTGCAGAGGTTTGAGTGTCT....................................................................................................2212.0022000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTT.......................................................................................................2112.0021000010
..................................................................................................................................................................CATTCAATTTCTGAACGGTAGT.........................................................2211.0010000100
.....................................................................................................................CATCGTGCAGAGGTTTGAGTC.......................................................................................................2111.0011000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCTG...................................................................................................2511.0010001000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTCTAA..................................................................................................2611.0010000010
.....................................................................................................................CATCGTGCAGAGGTTTGAGTA.......................................................................................................2111.0010000100
..................................................................................................................................................................CATTCAATTTCTGAACGGTAGAA........................................................2311.0011000000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGTA.....................................................................................................2311.0011000000
......................................................................................................................ATCGTGCAGAGGTTTGAGTGTCTT...................................................................................................2411.0010000010
......................................................................................................................ATCGTGCAGAGGTTTGAGTG.......................................................................................................2011.0010000010
......................................................................................................................ATCGTGCAGAGGTTTGAGT........................................................................................................1911.0010001000
.....................................................................................................................CATCGTGCAGAGGTTTGAGTGG......................................................................................................2211.0010001000
...................................................................................................TGTCCAGCTAATCAACTCC...........................................................................................................................1911.0010100000
droPer2
TTC--------A----AAATTT--------------------------------------------------------------------------------CCAGCTGGT----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droWil2
TCA-AATACTTTTGCG---TTA---------------------------------------------------------------------------------AGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTA--------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGTC.....................................................................................................231674.0067471265311
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGT......................................................................................................221119.0011932326814
.....................................................................................................................CATCGTGCTTAGGTTTGAGTG.......................................................................................................21142.00421011282
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGTCT....................................................................................................24130.00301510104
..................................................................................................................................................................CATTCAACCTTGGAGCGATAGA.........................................................2219.00900090
......................................................................................................................ATCGTGCTTAGGTTTGAGTGTC.....................................................................................................2215.00500050
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGTCC....................................................................................................2414.00420020
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGTCA....................................................................................................2413.00300021
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGC......................................................................................................2213.00330000
......................................................................................................................ATCGTGCTTAGGTTTGAGTGT......................................................................................................2112.00200011
.........................................................................................................................GTGCTTAGGTTTGAGTGTC.....................................................................................................1912.00200020
.....................................................................................................................CATCGTGCTTAGGTTTGAGT........................................................................................................2012.00200020
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGG......................................................................................................2212.00220000
......................................................................................................................ATCGTGCTTAGGTTTGAGTGTCT....................................................................................................2312.00200011
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGTCAA...................................................................................................2512.00200020
.........................................................................................................................GTGCTTAGGTTTGAGTGT......................................................................................................1811.00100001
..................................................................................................................................................................CATTCAACCTTGGAGCGATAG..........................................................2111.00100010
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGTT.....................................................................................................2311.00100010
...............................................................................................................................................................TGGCATTCAACCTTGGAGCGATA...........................................................2311.00100010
.....................................................................................................................CATCGTGCTTAGGTTTGAG.........................................................................................................1911.00100100
.............................................................................................................................................................A-TGGCATTCAACCTTGGAGCGATAGAA........................................................2711.00100010
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGTA.....................................................................................................2311.00101000
....................................................................................................................CCATCGTGCTTAGGTTTGAGTG.......................................................................................................2211.00100010
...................................................................................................................................................................ATTCAACCTTGGAGCGATAGA.........................................................2111.00101000
....................................................................................................................CCATCGTGCTTAGGTTTGAGTGTC.....................................................................................................2411.00100010
.....................................................................................................................CATCGTGCTTAGGTTTGAGTGTCG....................................................................................................2411.00110000
droVir3
ATTAA------A---G---ACA-------GGT-----------------AT------------------------------------GTATGGAT-CTCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAAC-----------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................................CATCGTGCACAGGTTTGAGTGT......................................................................................................221108.001080013232011000041322141102101215158020000330000000000000000001135500000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-....................................................................................................23190.00901011310100000001003200020000020110000010000000000000000000013440100000000100000001
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-T...................................................................................................24117.00170011000000000021032102200000100000000000000000000000000000000100000000000000000
..................................................................................................................................................................CATTCAACCTTTGAACGGTAGA.........................................................22117.00170016000000000000010001000000000100000000000000000000000000411000000000001000000
.....................................................................................................................CATCGTGCACAGGTTTGAGTG.......................................................................................................2117.0070000000000000010000200000000000100000001000000000000000000000100000000010000000
.....................................................................................................................CATCGTGCACAGGTTTGAGT........................................................................................................2015.0050000000000000010000001100000100100000000000000000000000000000000000000000000000
..................................................................................................................................................................CATTCAACCTTTGAACGG.............................................................1814.0040000000000000000000000000000000000000000000100000000000000300000000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGAG.........................................................................................................1914.0040000000001000000000000000001010100000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-C...................................................................................................2412.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CCATCGTGCACAGGTTTGAGTGT......................................................................................................2312.0020000000000000002000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTC-....................................................................................................2312.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TTCAACCTTTGAACGGTAGAG........................................................2111.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................GTGCACAGGTTTGAGTGT......................................................................................................1811.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-CT..................................................................................................2511.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-AT..................................................................................................2511.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-A...................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-AA..................................................................................................2511.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-TT..................................................................................................2511.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
.................................................................................................TCTCATCAGTTAGCTAGCTC............................................................................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGA..........................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................................................................................................ATTCAACCTTTGAACGGTAGA.........................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGA.........................................................3911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
..................................................................................................................................................................CATTCAACCTTTGAACGGTAG..........................................................2111.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGA......................................................................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................TTCAACCTTTGAACGGTAGA.........................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................TTCAACCTTTGAACGGTAGAGA.......................................................2211.0010000100000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
TCT--------T----ATTTGA-CTCGAA-----------------------T-CT----CA-GGTA-----------------------TCCAA-TAT----GGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTT-TGGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACT-G---A-------------------AAGCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-....................................................................................................231467.0046781760225922
..................................................................................................................................................................CATTCAGCCTTTGAACGGTAGA.........................................................221128.00128414001064
.....................................................................................................................CATCGTGCACAGGTTTGAGTGT......................................................................................................22187.008712115121037
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTC-....................................................................................................23142.00420000420
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-T...................................................................................................24113.0013121306
.............................................................................................AA-TAT----GGGTTAGCGAGCTC............................................................................................................................1918.008010070
.....................................................................................................................CATCGTGCACAGGTTTGAGTGC......................................................................................................2217.007000070
.....................................................................................................................CATCGTGCACAGGTTTGAGTG.......................................................................................................2115.005310010
.....................................................................................................................CATCGTGCACAGGTTTGAGT........................................................................................................2013.003110001
.....................................................................................................................CATCGTGCACAGGTTTGAGTGAC-....................................................................................................2313.003000030
..................................................................................................................................................................CATTCAGCCTTTGAACGGTAG..........................................................2112.002100010
............................................................................................CAA-TAT----GGGTTAGCGAGCTC............................................................................................................................2012.002010010
....................................................................................................................CCATCGTGCACAGGTTTGAGTGTT-....................................................................................................2411.001000010
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---G.............................................................................................2711.001010000
.....................................................................................................................CATCGTGCACAGGTTTGAG.........................................................................................................1911.001000001
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-TC..................................................................................................2511.001100000
...................................................................................................................................................................ATTCAGCCTTTGAACGGTAGA.........................................................2111.001000010
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTA-....................................................................................................2311.001000010
......................................................................................................................ATCGTGCACAGGTTTGAGTGT......................................................................................................2111.001100000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---T.............................................................................................2711.001010000
..............................................................................................A-TAT----GGGTTAGCGAGCTC............................................................................................................................1811.001000010
..................................................................................................................................................................CATTCAGCCTTTGAACGGTAGAA........................................................2311.001000010
...................................................................................................................................................................ATTCAGCCTTTGAACGGTAGG.........................................................2111.001000010
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-TT..................................................................................................2511.001100000
.....................................................................................................................CATCGTGCACAGGTTTGAGTGTT-C...................................................................................................2411.001010000
...................................................................................................................................................................ATTCAGCCTTTGAACGGTAGAA........................................................2211.001000010
...........................................................................................CCAA-TAT----GGGTTAGCGAGCTC............................................................................................................................2111.001000010
......................................................................................................................ATCGTGCACAGGTTTGAGTGTT-....................................................................................................2211.001000010
..........................................................................................TCCAA-TAT----GGGTTAGCGAGCTC............................................................................................................................2211.001000010
....................................................................................................................CCATCGTGCACAGGTTTGAGTGTC-....................................................................................................2411.001000010
.........................................................................................................................GTGCACAGGTTTGAGTGTT-....................................................................................................1911.001010000
droGri2
TAA--------A----GA--CA-------GGT-----------------TT-------------------GTTTTTCTTGTAGATGA-AATGGATTTAAT-AAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAAAC---AATC-ACAGTTAAAAGTTAAAGAGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.....................................................................................................................CATCGTGCACGGGTTTGAGTGT......................................................................................................22161.00612041
.....................................................................................................................CATCGTGCACGGGTTTGAGTG.......................................................................................................21155.00551144
.....................................................................................................................CATCGTGCACGGGTTTGAGT........................................................................................................20120.0020416
.....................................................................................................................CATCGTGCACGGGTTTGAGTGTC-....................................................................................................2316.00615
......................................................................................................................ATCGTGCACGGGTTTGAGTG.......................................................................................................2013.00321
.....................................................................................................................CATCGTGCACGGGTTTGAGTGA......................................................................................................2212.00202
......................................................................................................................ATCGTGCACGGGTTTGAGTGT......................................................................................................2112.00220
.....................................................................................................................CATCGTGCACGGGTTTGAGTGTC-T...................................................................................................2412.00211
.....................................................................................................................CATCGTGCACGGGTTTGAGTGTT-....................................................................................................2311.00110
..................................................................................................................................................................CATTCAGCCCCTGGACGCTAGA.........................................................2211.00110
.....................................................................................................................CATCGTGCACGGGTTTGAGTGTC-A...................................................................................................2411.00101
......................................................................................................................ATCGTGCACGGGTTTGAGTGTC-....................................................................................................2211.00101
........................................................................................................................CGTGCACGGGTTTGAGTGT......................................................................................................1911.00110
....................................................................................................................CCATCGTGCACGGGTTTGAGT........................................................................................................2111.00110

Generated: 10/20/2015 at 07:43 PM