ID:

dan_521

 Coordinate:

scaffold_12916:4369013-4369163 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.5 -2.4 -2.2

Flybase annnotation

exon [dana_GLEANR_15523:1]; CDS [Dana\GF14758-cds]; intron [Dana\GF14758-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCTCTTTCATTCCTCTCGATATTTTTAGCGGTTTATGCTCAATCACTTGGTAAGTACACCCACAACTAACAACAAACATAACATGACAAAAAACAACAACAATATCAATAATAAAAGCAACAATAACAACCATCTATGCACCAAGTACAATAAGCATAATAATAAACAAAAGAAAGCCCCTTTAACCTATAAGCAGACCCATCCCTCCCCTCTCTCTTCTCTCTTCAAAGCAGCCCCCTCTAGGGTGGCC
**************************************************.....................................................................................(((((..............)))))..........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V106
head
 V055
head
....CTTTCATTCCTCTCGATATTTTT................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
......TTCATTCCTCTCGATATTTTTAGCG............................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0
.............................................................CACAACTAACAACAAACATAAC........................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................AAGCAGACCCATCCCTCCCCTCTCC................................... 25 1 1 1.00 1 1 0 0 0 0
................................................................................TACATGACAAAAAACAACA........................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0
...............................GTTTATGCTCAATCACTTGATAAGCT.................................................................................................................................................................................................. 26 3 1 1.00 1 1 0 0 0 0
....................................................................................................................AGCAACAAGAACGACCATCTGT................................................................................................................. 22 3 1 1.00 1 0 0 0 0 1
...............CTCGATATTTTTAGCGGTT......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
..................GATATTTTTAGCGGTTTATG..................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...............................GTTTATGCTCAATCACTTG......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0
....................TATTTTCAGGGGTTTATGCCCAA................................................................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................AGCAGACCCATCCCTCCC......................................... 18 0 1 1.00 1 1 0 0 0 0
........CATTCCTCTCGATATTTTTAGCGGTT......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
.....................................GCTCAATCACTTGATAAG.................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0
....TGTTCATTCCTCTCGATATTTTT................................................................................................................................................................................................................................ 23 2 2 0.50 1 1 0 0 0 0
....................TATTTTCAGGGGTTTATGCTCA................................................................................................................................................................................................................. 22 2 2 0.50 1 0 0 1 0 0
.................................................................................................................AAAAGCAACAATTACAACC....................................................................................................................... 19 1 3 0.33 1 1 0 0 0 0
..................................................GTAAGTGCACCTACAAATAAC.................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................ATAAACAAAAGACCGCCCC...................................................................... 19 2 6 0.17 1 1 0 0 0 0
................................................................................AACATGTCAAAACACAACA........................................................................................................................................................ 19 2 9 0.11 1 1 0 0 0 0
.......................TTTCAGGGGTTTATGCTAAA................................................................................................................................................................................................................ 20 3 19 0.05 1 0 0 0 1 0
.................................................................................................................AAAAGGAACAAGAACAACC....................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0
.............................................................AACAACTAAAAACAAACATA.......................................................................................................................................................................... 20 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GCGAGAAAGTAAGGAGAGCTATAAAAATCGCCAAATACGAGTTAGTGAACCATTCATGTGGGTGTTGATTGTTGTTTGTATTGTACTGTTTTTTGTTGTTGTTATAGTTATTATTTTCGTTGTTATTGTTGGTAGATACGTGGTTCATGTTATTCGTATTATTATTTGTTTTCTTTCGGGGAAATTGGATATTCGTCTGGGTAGGGAGGGGAGAGAGAAGAGAGAAGTTTCGTCGGGGGAGATCCCACCGG
**************************************************.....................................................................................(((((..............)))))..........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V105
male body		 V106
head
 M044
female body
 M058
embryo
 V039
embryo
................................................................................................................................................................................CGGGGAAATTGGATATTCGTCTG.................................................... 23 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................................................GGGAGGGGAGAGAGAAGAGAG........................... 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................AGGGAAGAGAGAAGAGAGAA......................... 20 1 1 1.00 1 0 1 0 0 0 0
.....................................CGAGTAGGTCAACCATTCATG................................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0
................................................ACCTTTCATGTGGGTGTGG........................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 1 0 0
.......................................................................................................................................................................................................GGTAGGGAGGGGCGAGACA................................. 19 2 4 0.25 1 1 0 0 0 0 0
..............................................................................................................................................................................................................AGGGGAGGGAGAAGAGA............................ 17 1 5 0.20 1 1 0 0 0 0 0
...............................................................................................................................................................................................TTGGTCTGTTTAGGGAGGGGA....................................... 21 3 6 0.17 1 1 0 0 0 0 0
.........................................................................................................................................................................................TGGGTATACATCTGGGTAGG.............................................. 20 3 8 0.13 1 0 0 0 0 0 1
................................................................................................................................TTGGTAGACAAGAGGTTCAT....................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0
...........................................................................................................................................................................................................GGGAAGGGAGAGAGAAGA.............................. 18 1 8 0.13 1 0 0 0 1 0 0
................................................................................................................................................................................................TCGTCTGGGTGCGGAGGGGC....................................... 20 3 9 0.11 1 0 0 0 1 0 0
.......AGAAAGGAGACCTATAAAAA................................................................................................................................................................................................................................ 20 2 10 0.10 1 0 0 0 0 1 0
..........................................................................................................................................................................................GGGTATGCGTCTGGTTAGG.............................................. 19 3 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................AGAGAAGAGAGAGGTTTAAT.................. 20 3 20 0.05 1 0 0 0 0 1 0
..............................................................................................................................................................................................ATTCGTCTGTTTAGTGAGG.......................................... 19 3 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:4368963-4369213 - dan_521 CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGGTTTATGCTCAATCACTTGGTAAGTACACCCAC---------------------------------AAC---TAACAACAAACAT--------AACA-----TGAC---------A----AAAAACAACAACAATATCAAT------------AATAAAAGCAACAA---TAA---CAACCATCTATGCAC---CAAG---TACAATAAGCATAATAATAAACAAAAGA-AAGCC----------------CCTTTAACCTATAAGCAGACC-CATCCCTC---------------------------------------------CC----C--T-C-----TC--------TCTTC-----TC--------TCT------TCAAAGC---AGCCCCCTCTAGGGTGG--CC
droBip1 scf7180000396737:413860-414102 + CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGGTTTATGCTCAATCACTTGGTAAGTACAACCCCACGGTGA--CCCCACCCCACCCCACCCCCC-----ACAACAAAAACCACTT-----------------------------------------CACCAACAATATCAAT------------AAAGG---CAACAATAACAA---CAACCATCTATGCAC---CAAG---TACAATAAGCATAATAATAAACAAAAGA-AAGCC----------------CCTTTAACCTATAAGCAGATC-CC---CA-----------------------------------G--A----CC--------CCT------------------------------------------------AGAGCCCCACAGGGG---------GAT--
droKik1 scf7180000302472:1666441-1666655 - CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTCATGCTCAATCAAATGGTAAGTACAAAAG-------------------------------------CAACAAGAAG------------------------------CACACAAACCAGAGTA---------CAATAAGCCTAAT------------AATAATTA---TTA---TAAT---------AATAAAAACAAC------------GATAATAAACAAAAGA-AGCCC---------------CCTATTAACCTATAAGTTGTCC-CC---C-------------------------------------------------------CTTCA--C--------ATAT--TTG----TC--------TAT--ACCC-GAAAGC---ACCCGAG-----GAT----GA
droFic1 scf7180000454115:954297-954503 + CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACCCC---------------------------------CAACCTTAACCA---------C---------------------AT-CATAGACAA-------------------TAAA------------------------------------------------GC---CCTC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGACC-CC---CTC----------ACC----CCC-AACCCCTCTTGAAA--A----CC--------CCTTTACAC------ATATG--TATG----TA--------TGT------ACGTTGC-----------------------A
droEle1 scf7180000491046:2684499-2684697 + CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTAATGCTCAATCACTTGGTGAGTACAACCT-------------------------------AAACCCCAACCA---------C---------------------ATTTATAGCCAA------------------------------------------------------------------------T---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGTT----------------CTTTTAACCTATAAGTTGTCC-CC-----------------------------------CC-AAA--A---TCC-CC----C--T-CA--A------ATCTG--CATA----TA------CATAT------ACGTAGC---ACTCGAG---------TATAA
droRho1 scf7180000779695:68896-69091 + CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAACCC-------------------------------AAACCCCAACCA---------C---------------------AT-TATAGACAA-----------------------------------------------------------------------TC---CCCT---TACCATAAGAATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGCCC-CC-----------------------------------CCGAAA--A----TAC-CC----CCTTAA--A--------ATAT--ATG----TA--------CAT------ACGTAGC---ACCCGAG---------GAT--
droBia1 scf7180000301518:431254-431444 - CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTCTGGTCAATCACTTGGTGAGTACAGCCC-------------------------------------CAACCA---------C---------------------CT-CATAGACAA----------------------------------------------------------------------------CCCC---TACAATAAGCATTATGATAAACAA-AGG-AGTCC----------------CCTT--ACCTATAAGCTGTCC-CC-----------------------------------AC-AAG--A----CC--------CCTCCGCCA------ACATC--TACG----TATGTACATAACTATCCCCACGTAGC-----------------------A
droTak1 scf7180000415876:218882-219088 - CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAAGCAACTGGTGAGTACAACCC-------------------------------------CAACCA---------A---------------------AT-CATAGACAA------------------------------------------------------------------------C---CCCA---TACAATAAGCATAATGATAAACAA-AGA-AGTCC----------------CTTTTAACCTATAAGTTGTCC-CC-----------------------------------CC-ATA--A---TGC-CC----CCCTTCACAA------ATATG--TATG----TATTTATATATGTATACCTACGTAGC---ACCCGAG---------GAT--
droEug1 scf7180000409461:79303-79529 + CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAACCC-------------------------------AC-----AACCC---------CTTCAAAACAGCCCCGCCCCCT---------C----CCTTAC------------------------------------------------------AAGCTCCCTTA---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGCCCACACCCC-------------------------------ACAACA--A---TAC-CC----C--T-C-----TCTCTCCATC--TCTC----TCTCTATGTATCTCT------------------------CTCACCA--CC
dm3 chr2L:8089687-8089934 + CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAGCCCCCCGAAAAAACCCC---------------------------------------TCTAAAT--------------C-TAAAAGAA----------------------------------------------------------------------TGAAC---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGTAC-CC---CGCCCATAAAATCACCCTGCCCC-AACCACACA----CCCACCCATAC-ACACA----TAT--AATA--------TTAACACACCTA--------TGT------ACGTAGC---AGCCCAG-----TATAA--AG
droSim2 2l:7816980-7817196 + dsi_19057 CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAGCCCCCCGAAAA--TCCC---------------------------------------TATAAAA--------------C-TAAAAGAA----------------------------------------------------------------------TGAAC---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGTAC-CC---CGCCCCTAAAATCACCCTGCCCC-AACCGCACACCGACCCACCCATAC-ACACA----TAA--AATA--------TCT---------------------------------------------------------
droSec2 scaffold_3:3586370-3586589 + CGCTCTTTC---------------------------ATTCCTCCTCGATATTTTTAGCAATTTATGCTCAATCACTTGGTGAGTACGGCCCCCCGAAAA-TCCCC---------------------------------------TCTAAAA--------------C-TAAAAGAA----------------------------------------------------------------------TGAAC---CCCC---TACAATAAGTATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGTAC-CC---CGCCCCTAAAATCACCCTGCCCCCAACCGCACACCGACCCACCCATAC-ACACA----TAA--AATA--------TCT---------------------------------------------------------
droYak3 2L:10719806-10720047 + CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAGCCCCCCGAAAAACCCTC---------------------------------------CCTAAAA--------------C-TCAAAGAAAA-----------------------------------------------------------------------CC---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAGGTTGTAC-CC---CGCCCCTGAAATCAACCTGCCCC-ACCCACACA--------CCCATAC-ACACC------C--AATA--------TCTACA----CA--------TCT------ACGTAGC---ACCCCAGTATAAAGGAA--TA
droEre2 scaffold_4929:16995250-16995473 + CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAGCCCCCCGAAAA--CCCC---------------------------------------CCTAAAA--------------C-TCAAAGAAAA------------------------------------------------------------------------C---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGTAC-CT---CGCCCCTAAAATCACCCTGCCCC-ACCCACACA--------CCCATAC-ACGCA----AAT--AATA--------TCTACA----CA--------TCT------ACGTAGC---AC-------------------
dp5 4_group4:982842-982992 - CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTAAGTACAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAAAAACAATGG--AACAA-AAAAAAACTCAATTACCTTCCCCCCTTTTTAACCTATAAGTTGTCC-CC-----------------------------------TC-AAG--A----CC--------CC-------------------------------------------------------------TA-----GCGTTA--GA
droPer2 scaffold_46:76246-76396 + CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTAAGTACAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAAAAACAATGG--AACAA-AAA-AAACTCAATTACCTTCCCCCCTTTTTAACCTATAAGTTGTCC-CC---C-------------------------------TC-AAG--A----CC--------CC-------------------------------------------------------------TA-----GCGTTA--GA
droWil2 scf2_1100000004822:2704393-2704606 + CGCCTTGCAGCCATCCACATCCAAATCTACATCCACATCCAG-CTCCAGCTCCTTGCCGTTGCATGTGCAGCACCAACAG------------------------------------------------CAGCAGCAACAACAA-----------------------------------------CAGCAGCAACATCAAC------------AGCAG---CAGCAGCAGCAG---CACCAGCACCAGCAA---CGAA---TGCGACAACGATGATGATGACG-------ACGAC-----------------ATTTAGTCACGGGGATC----------------------------------------------------------------------------------------------TATCTATACAGATAC------------------------AGCAAGGAT--
droVir3 scaffold_12963:16285654-16285815 + CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGGTTCATGCTCAATCATTTGGTAAGTACTCG-A-------------------------------CAA---CAACAAGAA-----------------------------------------------CAACAACAATAATAATAATAAT------------AATAATAA---TTA---TAAT---------AA---TAAA---TACAATAACAATTAA------------------------------------TATTAACCAGGC---------------------------------------------------------------------------------------------AAAACCTA--------TCT----------------------------TTAAGCT--
droMoj3 scaffold_6308:135439-135593 - AAATAC----------------------------------------GATTTTGCTAGTCCGCCGCATCCAGGCA-TTGGCAACAACAACAA-------------------------------------CAATAACAACAACAGC--------AGCA-----CCAA---------C----AATAAC------------AACACTAATAACAACAATAA------TAATAACAACAACAACAA------TAA---CAAC---AACAACAACAACAACAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC-----AATTG--AA
droGri2 scaffold_14853:5464628-5464801 - CAGCAGC-------------------------------------------------------------------------AGCAGCAGCTGC-------------------------------------AACAACAACAACCAC-----AA---C----------AACTACAATCAACAAGCAA---------CAAC---------------AAGAG------CAACAGCAACAAAAGCAT---T---AGCATCAACATCGACATGGAGCAGGATGGCAACAA--TA--TAATTCGAGGTATACCGCCGCCTTCGATTTAAGAA--------------------------------------------------------------------------------------------------------------------------------GGCTTTTCCAACGGGG--GT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGGTTTATGCTCAATCACTTGGTAAGTACACCCAC---------------------------------AAC---TAACAACAAACAT--------AACA-----TGAC---------A----AAAAACAACAACAATATCAAT------------AATAAAAGCAACAA---TAA---CAACCATCTATGCAC---CAAG---TACAATAAGCATAATAATAAACAAAAGA-AAGCC----------------CCTTTAACCTATAAGCAGACC-CATCCCTC---------------------------------------------CC----C--T-C-----TC--------TCTTC-----TC--------TCT------TCAAAGC---AGCCCCCTCTAGGGTGG--CCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....CTTTC---------------------------ATTCCT-CTCGATATTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
......TTC---------------------------ATTCCT-CTCGATATTTTTAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................CAC---------------------------------AAC---TAACAACAAACAT--------AAC.............................................................................................................................................................................................................................................................................................................................2211.001010000
..................................................................................................................................................................................................................................................................................................................................AAGCAGACC-CATCCCTC---------------------------------------------CC----C--T-C-----TC--------C...........................................................2511.001010000
...........................................CTCGATATTTTTAGCGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..............................................GATATTTTTAGCGGTTTATG......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................................................GTTTATGCTCAATCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...................................................................................................................................................................................................................................................................................................................................AGCAGACC-CATCCCTC---------------------------------------------CC----.................................................................................1811.001010000
........C---------------------------ATTCCT-CTCGATATTTTTAGCGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droBip1
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGGTTTATGCTCAATCACTTGGTAAGTACAACCCCACGGTGA--CCCCACCCCACCCCACCCCCC-----ACAACAAAAACCACTT-----------------------------------------CACCAACAATATCAAT------------AAAGG---CAACAATAACAA---CAACCATCTATGCAC---CAAG---TACAATAAGCATAATAATAAACAAAAGA-AAGCC----------------CCTTTAACCTATAAGCAGATC-CC---CA-----------------------------------G--A----CC--------CCT------------------------------------------------AGAGCCCCACAGGGG---------GAT--SizeHit CountTotal NormTotal
No Reads
droKik1
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTCATGCTCAATCAAATGGTAAGTACAAAAG-------------------------------------CAACAAGAAG------------------------------CACACAAACCAGAGTA---------CAATAAGCCTAAT------------AATAATTA---TTA---TAAT---------AATAAAAACAAC------------GATAATAAACAAAAGA-AGCCC---------------CCTATTAACCTATAAGTTGTCC-CC---C-------------------------------------------------------CTTCA--C--------ATAT--TTG----TC--------TAT--ACCC-GAAAGC---ACCCGAG-----GAT----GASizeHit CountTotal NormTotal
No Reads
droFic1
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACCCC---------------------------------CAACCTTAACCA---------C---------------------AT-CATAGACAA-------------------TAAA------------------------------------------------GC---CCTC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGACC-CC---CTC----------ACC----CCC-AACCCCTCTTGAAA--A----CC--------CCTTTACAC------ATATG--TATG----TA--------TGT------ACGTTGC-----------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTAATGCTCAATCACTTGGTGAGTACAACCT-------------------------------AAACCCCAACCA---------C---------------------ATTTATAGCCAA------------------------------------------------------------------------T---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGTT----------------CTTTTAACCTATAAGTTGTCC-CC-----------------------------------CC-AAA--A---TCC-CC----C--T-CA--A------ATCTG--CATA----TA------CATAT------ACGTAGC---ACTCGAG---------TATAASizeHit CountTotal NormTotal
No Reads
droRho1
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAACCC-------------------------------AAACCCCAACCA---------C---------------------AT-TATAGACAA-----------------------------------------------------------------------TC---CCCT---TACCATAAGAATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGCCC-CC-----------------------------------CCGAAA--A----TAC-CC----CCTTAA--A--------ATAT--ATG----TA--------CAT------ACGTAGC---ACCCGAG---------GAT--SizeHit CountTotal NormTotal
No Reads
droBia1
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTCTGGTCAATCACTTGGTGAGTACAGCCC-------------------------------------CAACCA---------C---------------------CT-CATAGACAA----------------------------------------------------------------------------CCCC---TACAATAAGCATTATGATAAACAA-AGG-AGTCC----------------CCTT--ACCTATAAGCTGTCC-CC-----------------------------------AC-AAG--A----CC--------CCTCCGCCA------ACATC--TACG----TATGTACATAACTATCCCCACGTAGC-----------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAAGCAACTGGTGAGTACAACCC-------------------------------------CAACCA---------A---------------------AT-CATAGACAA------------------------------------------------------------------------C---CCCA---TACAATAAGCATAATGATAAACAA-AGA-AGTCC----------------CTTTTAACCTATAAGTTGTCC-CC-----------------------------------CC-ATA--A---TGC-CC----CCCTTCACAA------ATATG--TATG----TATTTATATATGTATACCTACGTAGC---ACCCGAG---------GAT--SizeHit CountTotal NormTotal
No Reads
droEug1
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAACCC-------------------------------AC-----AACCC---------CTTCAAAACAGCCCCGCCCCCT---------C----CCTTAC------------------------------------------------------AAGCTCCCTTA---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGCCCACACCCC-------------------------------ACAACA--A---TAC-CC----C--T-C-----TCTCTCCATC--TCTC----TCTCTATGTATCTCT------------------------CTCACCA--CCSizeHit CountTotal NormTotal
No Reads
dm3
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAGCCCCCCGAAAAAACCCC---------------------------------------TCTAAAT--------------C-TAAAAGAA----------------------------------------------------------------------TGAAC---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGTAC-CC---CGCCCATAAAATCACCCTGCCCC-AACCACACA----CCCACCCATAC-ACACA----TAT--AATA--------TTAACACACCTA--------TGT------ACGTAGC---AGCCCAG-----TATAA--AGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.GCTCTTTC---------------------------ATTCCT-CTCGATA......................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CTCGATATTTTTAGCGATTTATGCTCA..................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TTTATGCTCAATCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TTCCT-CTCGATATTTTTAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTTTAGCGATTTATGCTCAATC...............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TTAGCGATTTATGCTCAATCA..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................ATATTTTTAGCGATTTATG......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................................TAATGATAAACAA-AGA-AGGC...................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................CGATATTTTTAGCGATTTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTTTAGCGATTTATGCTCAATCACTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CCT-CTCGATATTTTTAGCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........C---------------------------ATTCCT-CTCGATATTTTTAGCGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTTTC---------------------------ATTCCT-CTCGATATTTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTTTTAGCGATTTATGCTCAATCACTT...........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................ATTTTTAGCGATTTATGCT....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCTCTTTC---------------------------ATTCCT-CTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCTCTTTC---------------------------ATTCCT-CTCGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TCCT-CTCGATATTTTTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................T-CTCGATATTTTTAGCGATTTATGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AAGCATAATGATAAACAA-...........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CCT-CTCGATATTTTTAGCGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...........................................................ATTTATGCTCAATCACTT...........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TAAAATCACCCTGCCCC-AACCACACA----CC................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CT-CTCGATATTTTTAGCGATTTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ACAATAAGCATAATGATAAACAA-AG.........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CGATATTTTTAGCGATTTATGCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TTTAGCGATTTATGCTCAATCACTT...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TTATGCTCAATCACTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAGCCCCCCGAAAA--TCCC---------------------------------------TATAAAA--------------C-TAAAAGAA----------------------------------------------------------------------TGAAC---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGTAC-CC---CGCCCCTAAAATCACCCTGCCCC-AACCGCACACCGACCCACCCATAC-ACACA----TAA--AATA--------TCT---------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................GATATTTTTAGCGATTTATG......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
...........................................................................................................................................................................................................................................................................................A-AGA-AGGCC----------------CTTTTG............................................................................................................................................................15160.06100000000001000000
droSec2
CGCTCTTTC---------------------------ATTCCTCCTCGATATTTTTAGCAATTTATGCTCAATCACTTGGTGAGTACGGCCCCCCGAAAA-TCCCC---------------------------------------TCTAAAA--------------C-TAAAAGAA----------------------------------------------------------------------TGAAC---CCCC---TACAATAAGTATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGTAC-CC---CGCCCCTAAAATCACCCTGCCCCCAACCGCACACCGACCCACCCATAC-ACACA----TAA--AATA--------TCT---------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAGCCCCCCGAAAAACCCTC---------------------------------------CCTAAAA--------------C-TCAAAGAAAA-----------------------------------------------------------------------CC---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAGGTTGTAC-CC---CGCCCCTGAAATCAACCTGCCCC-ACCCACACA--------CCCATAC-ACACC------C--AATA--------TCTACA----CA--------TCT------ACGTAGC---ACCCCAGTATAAAGGAA--TASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....CTTTC---------------------------ATTCCT-CTCGATATT....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
........C---------------------------ATTCCT-CTCGATATTTTTAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................AATCAACCTGCCCC-ACCCACACA--------CCC...........................................................................................2611.00100100000000
.....................................TTCCT-CTCGATATTTTTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.........................................T-CTCGATATTTTTAGCGATTTATGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................CATAC-ACACC------C--AATA--------TCTACA----CA--------TCT------ACGT...........................3011.00100000010000
.................................................................................................................................................................................................................................................................................ATGATAAACAA-AGA-AGGCC----------------..................................................................................................................................................................1911.00100100000000
......TTC---------------------------ATTCCT-CTCGATATTTTTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
droEre2
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTGAGTACAGCCCCCCGAAAA--CCCC---------------------------------------CCTAAAA--------------C-TCAAAGAAAA------------------------------------------------------------------------C---CCCC---TACAATAAGCATAATGATAAACAA-AGA-AGGCC----------------CTTTTAACCTATAAGTTGTAC-CT---CGCCCCTAAAATCACCCTGCCCC-ACCCACACA--------CCCATAC-ACGCA----AAT--AATA--------TCTACA----CA--------TCT------ACGTAGC---AC-------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................GATTTATGCTCAATCACTT...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...........................................................ATTTATGCTCAATCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.................................................................................................................................................CTAAAA--------------C-TCAAAGAAAA------------------------------------------------------------------------C---CCCC---TA..................................................................................................................................................................................................................2411.0010100000
..............................................GATATTTTTAGCGATTTATG......................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................................GATATTTTTAGCGATTTATGCT....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
................................................TATTTTTAGCGATTTATGCTCAATCA..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
dp5
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTAAGTACAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAAAAACAATGG--AACAA-AAAAAAACTCAATTACCTTCCCCCCTTTTTAACCTATAAGTTGTCC-CC-----------------------------------TC-AAG--A----CC--------CC-------------------------------------------------------------TA-----GCGTTA--GASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................GATTTATGCTCAATCACTT...........................................................................................................................................................................................................................................................................................................................................................................................................1913.0030300000000
....................................ATTCCT-CTCGATATTTTTAGCGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020200000000
.....................................TTCCT-CTCGATATTTTTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020010100000
........C---------------------------ATTCCT-CTCGATATTTTTAGCGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020110000000
..............................................GATATTTTTAGCGATTTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................................TCCT-CTCGATATTTTTAGCGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................ATTTATGCTCAATCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....CTTTC---------------------------ATTCCT-CTCGATATTTTTAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
........C---------------------------ATTCCT-CTCGATATTTTTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
droPer2
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGATTTATGCTCAATCACTTGGTAAGTACAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAAAAACAATGG--AACAA-AAA-AAACTCAATTACCTTCCCCCCTTTTTAACCTATAAGTTGTCC-CC---C-------------------------------TC-AAG--A----CC--------CC-------------------------------------------------------------TA-----GCGTTA--GASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.GCTCTTTC---------------------------ATTCCT-CTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
........C---------------------------ATTCCT-CTCGATATTTTTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droWil2
CGCCTTGCAGCCATCCACATCCAAATCTACATCCACATCCAG-CTCCAGCTCCTTGCCGTTGCATGTGCAGCACCAACAG------------------------------------------------CAGCAGCAACAACAA-----------------------------------------CAGCAGCAACATCAAC------------AGCAG---CAGCAGCAGCAG---CACCAGCACCAGCAA---CGAA---TGCGACAACGATGATGATGACG-------ACGAC-----------------ATTTAGTCACGGGGATC----------------------------------------------------------------------------------------------TATCTATACAGATAC------------------------AGCAAGGAT--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................CCAACAG------------------------------------------------CAGCAGCAACAACAA-----------------------------------------CAGCA...........................................................................................................................................................................................................................................................................................2750.20100001
............................................................................ACAG------------------------------------------------CAGCAGCAACAACAA-----------------------------------------CAGC............................................................................................................................................................................................................................................................................................23200.15300030
....................................................................................................................................AGCAACAACAA-----------------------------------------CAGCAGCA........................................................................................................................................................................................................................................................................................19200.15300030
......................................................................................................................................CAACAACAA-----------------------------------------CAGCAGCAAC......................................................................................................................................................................................................................................................................................19200.15300030
.....................................................................AGCACCAACAG------------------------------------------------CAGCAGCAACA.............................................................................................................................................................................................................................................................................................................................................2290.11100001
..............................................................................................................................................A-----------------------------------------CAGCAGCAACATCAAC------------AGCA................................................................................................................................................................................................................................................................2190.11100010
..............................................................................AG------------------------------------------------CAGCAGCAACAACAA-----------------------------------------CAGCA...........................................................................................................................................................................................................................................................................................22200.10200020
.............................................................................................................................................................................................GCAACATCAAC------------AGCAG---CAGCAGCA....................................................................................................................................................................................................................................................24110.09100010
..........................................................................................................................................AACAA-----------------------------------------CAGCAGCAACATCAAC------------....................................................................................................................................................................................................................................................................21120.08100001
.........................................................................................................................................................................................AGCAGCAACATCAAC------------AGCAG---CA..........................................................................................................................................................................................................................................................22140.07100010
.....................................................................................................................................GCAACAACAA-----------------------------------------CAGCAGCAACAT....................................................................................................................................................................................................................................................................................22160.06101000
.......................................................................CACCAACAG------------------------------------------------CAGCAGCAACAACA..........................................................................................................................................................................................................................................................................................................................................23180.06100010
................................................................................................................................CAGCAGCAACAACAA-----------------------------------------CAGCAG..........................................................................................................................................................................................................................................................................................21200.05101000
.................................................................................................................................................................................................CATCAAC------------AGCAG---CAGCAGCAG...................................................................................................................................................................................................................................................21200.05101000
..............................................................................AG------------------------------------------------CAGCAGCAACAACAA-----------------------------------------CAGCAGCA........................................................................................................................................................................................................................................................................................25200.05100010
..........................................................................................................................................................................................GCAGCAACATCAAC------------AGCA................................................................................................................................................................................................................................................................18200.05100010
...........................................................................................................................................................................................CAGCAACATCAAC------------AGCAG---C...........................................................................................................................................................................................................................................................19200.05100010
.......................................................................................................................................................................................................C------------AGCAG---CAGCAGCAGCAG---C............................................................................................................................................................................................................................................19200.05100001
.................................................................................................................................AGCAGCAACAACAA-----------------------------------------CAGCAGCAA.......................................................................................................................................................................................................................................................................................23200.05101000
.........................................................................................................................................CAACAA-----------------------------------------CAGCAGCAACATCA..................................................................................................................................................................................................................................................................................20200.05100001
..................................................................................................................................................................................................ATCAAC------------AGCAG---CAGCAGCA....................................................................................................................................................................................................................................................19200.05100010
.......................................................................CACCAACAG------------------------------------------------CAGCAGCAAC..............................................................................................................................................................................................................................................................................................................................................19200.05100010
........................................................................................................................................................................................................................G---CAGCAGCAGCAG---CACCAGCA.....................................................................................................................................................................................................................................21200.05100010
.................................................................................................................................................................................................CATCAAC------------AGCAG---CAGCAGC.....................................................................................................................................................................................................................................................19200.05100100
..................................................................................................................................................................................................ATCAAC------------AGCAG---CAGCAGCAGCA.................................................................................................................................................................................................................................................22200.05100010
droVir3
CGCTCTTTC---------------------------ATTCCT-CTCGATATTTTTAGCGGTTCATGCTCAATCATTTGGTAAGTACTCG-A-------------------------------CAA---CAACAAGAA-----------------------------------------------CAACAACAATAATAATAATAAT------------AATAATAA---TTA---TAAT---------AA---TAAA---TACAATAACAATTAA------------------------------------TATTAACCAGGC---------------------------------------------------------------------------------------------AAAACCTA--------TCT----------------------------TTAAGCT--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.GCTCTTTC---------------------------ATTCCT-CTCGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.................................................ATTTTTAGCGGTTCATGCTCAATCATTTGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................3211.001000000000000000000000000000000000000000000000000000000000100000
................................................TATTTTTAGCGGTTCATGCT....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.GCTCTTTC---------------------------ATTCCT-CTCGATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
..............................................GATATTTTTAGCGGTTCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AA------------------------------------TATTAACCAGGC---------------------------------------------------------------------------------------------AAAACCT.................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....CTTTC---------------------------ATTCCT-CTCGATATTTTTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.....................................................TTAGCGGTTCATGCTCAATC...............................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................................TTAGCGGTTCATGCTCAAT................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AATAATAAT------------AATAATAA---TTA---TAAT---------AA---T..........................................................................................................................................................................................................................27200.051000000000000000000000010000000000000000000000000000000000000000
droMoj3
AAATAC----------------------------------------GATTTTGCTAGTCCGCCGCATCCAGGCA-TTGGCAACAACAACAA-------------------------------------CAATAACAACAACAGC--------AGCA-----CCAA---------C----AATAAC------------AACACTAATAACAACAATAA------TAATAACAACAACAACAA------TAA---CAAC---AACAACAACAACAACAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC-----AATTG--AASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CAGCAGC-------------------------------------------------------------------------AGCAGCAGCTGC-------------------------------------AACAACAACAACCAC-----AA---C----------AACTACAATCAACAAGCAA---------CAAC---------------AAGAG------CAACAGCAACAAAAGCAT---T---AGCATCAACATCGACATGGAGCAGGATGGCAACAA--TA--TAATTCGAGGTATACCGCCGCCTTCGATTTAAGAA--------------------------------------------------------------------------------------------------------------------------------GGCTTTTCCAACGGGG--GTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................GACATGGAGCAGGATGGCAACAA--TA--.......................................................................................................................................................................................2511.00110
.......................................................................................................................................AACAACCAC-----AA---C----------AACTACA............................................................................................................................................................................................................................................................................................................1980.13110

Generated: 05/17/2015 at 10:36 PM