dan_520

CDS [Dana\GF14758-cds]; exon [dana_GLEANR_15523:5]; CDS [Dana\GF14758-cds]; exon [dana_GLEANR_15523:4]; intron [Dana\GF14758-in]

##################################################--------------------------------------------------------------------################################################## GATAACCTGCGTGGTTGTGGGTACTGCACCACAATTGTCCTGGTCTTTTGGTGAGTATCTATCAGATTAATGGATTAAATAGATATCAATAATAATCTGAAATTTTTTGGCAATACAGGCAACTTAACGCTGACAAACAGCACAGGCCGCTACGTCCTGAAGGAGGAC ************************************************.(((.(((((((..((((....))))..))))))))))..............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V106 head	V039 embryo	V105 male body	V055 head
................................AATTGTCCTGGTCTTTTGGC....................................................................................................................	20	1	1	2.00	2	0	2	0	0	0	0
.................................ATTGTCCTGGTCTTTTGGC....................................................................................................................	19	1	1	2.00	2	1	1	0	0	0	0
................................................................................................................................................GGCCGCTACGTCCTGAAGGA....	20	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................................GCTGACAAACAGCACAGGCCGCTACG..............	26	0	1	1.00	1	1	0	0	0	0	0
..TAACCTGCGTGGTTGTGGGTA.................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0
............................................................................................................................TAACGCTGACAAACAGCACAGGCC....................	24	0	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................GTCCGCTACGTCCTGAAGGAGG..	22	1	1	1.00	1	0	1	0	0	0	0
....................GTACTGCACCACAATTGTCCTG..............................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................AGCTACGTCCTGAAGGAGG..	19	1	1	1.00	1	1	0	0	0	0	0
...AACCTGCGTGGTTGTGGGTACTG..............................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................AGCACAGGCCGCTACGTC............	18	0	1	1.00	1	0	1	0	0	0	0
..................GGGTACTGCACCACAATTGTCCTGGTCT..........................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
GATAACCTGCGTGGTTGTGGGTACTGC.............................................................................................................................................	27	0	1	1.00	1	0	0	1	0	0	0
.......TGCGTGGTTGTGGGTACTGCACCACAAT.....................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................ACGCTGACAAACAGCACAGGCCGCTACG..............	28	0	1	1.00	1	1	0	0	0	0	0
...............TTTGGGTACTGCACCACAATTGTCCTG..............................................................................................................................	27	1	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................AGCACAGGCCGCTACGTCCTGAAGGAG...	27	0	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................GCTACGTCCTGAAGGAGG..	18	0	1	1.00	1	0	1	0	0	0	0
....ACCTGCGTGGTTGTGGGTACT...............................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................CGCTACGTCCTGAAGGAGGA.	20	0	1	1.00	1	0	1	0	0	0	0
..........................CACCACAATTGTCCTGGTC...........................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................ACAGCACAGGCCGCTACGTCCTGAAGG.....	27	0	1	1.00	1	1	0	0	0	0	0
........................TGCACCACAATTGTCCTGGTC...........................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
......................................................................................................................GCAACTTAACGCTGACAAAC..............................	20	0	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................AGGCCGCTACGTCCTGAAGGAGGA.	24	0	1	1.00	1	0	0	0	1	0	0
.....CCTGCGTGGTTGTGGGTACTGCACC..........................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0
..................................TTGTACTGGTCTTTTGTAGAGT................................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................GTAACGCTGACAAACGGCACA........................	21	2	2	0.50	1	1	0	0	0	0	0
.................................ATTGTCCTGGTCTTTTGGCA...................................................................................................................	20	2	2	0.50	1	1	0	0	0	0	0
.................................................................ATTAATGGATTAACTAGATT...................................................................................	20	2	2	0.50	1	0	0	1	0	0	0
..................................................................TTACTGGATTAAATGGATA...................................................................................	19	2	3	0.33	1	0	0	0	0	0	1
.................................................................ATCAATGGATTAACTAGAT....................................................................................	19	2	4	0.25	1	0	0	1	0	0	0
.................................ATTGTCCTGGCCTTTTGGC....................................................................................................................	19	2	5	0.20	1	0	1	0	0	0	0
.................................................................ATGAATGGATTAAATAGATT...................................................................................	20	2	5	0.20	1	0	0	0	0	0	1
...................................TGTCCTGGTCTTTTGGCAACT................................................................................................................	21	3	10	0.10	1	1	0	0	0	0	0

CTATTGGACGCACCAACACCCATGACGTGGTGTTAACAGGACCAGAAAACCACTCATAGATAGTCTAATTACCTAATTTATCTATAGTTATTATTAGACTTTAAAAAACCGTTATGTCCGTTGAATTGCGACTGTTTGTCGTGTCCGGCGATGCAGGACTTCCTCCTG ************************************************.(((.(((((((..((((....))))..))))))))))..............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	M044 female body
..............................................................................................................................................ATCCGGCGATGCAGGACG........	18	2	2	0.50	1	1	0
..........CAGGCACACCCATGACGTGG..........................................................................................................................................	20	3	3	0.33	1	1	0
..............................................................................................................GTTATGTCGCTTGACTTGCG......................................	20	3	4	0.25	1	0	1
.........................................................................................................AAGCCGTTAGGGCCGTTGAA...........................................	20	3	9	0.11	1	0	1
.................TCCCATGACGAGGTGCTAA....................................................................................................................................	19	3	17	0.06	1	1	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_12916:4350825-4350992 -	dan_520	GATAACCTGCGTGGTTGTGGGTACTGCACCACAATTGTCCTGGTCTTTTGGTGAGTATCT-ATCA-GA-------------------T-----TAATGGAT----------------TA-AATAGATATCAA-----------TAATAATCTG-------AAATT--TT-----------TTGGCAATACAGGCAAC---TTAACGCTGACAAACAGCACAGGCCGCTACGTCCTGAAGGAGGAC------
droBip1	scf7180000396737:430593-430761 +		GATAACCTGCGTCGTTGTGGGAACCGAGCCACAATTGTCGTGGTCCTTTGGTGAGTATCT-ATCG-GA-------------------T-----CGATCGAT------CGAT------CGCAA----T-----------------GCTAACTTCT------A-CGA-TTT-TCCTC-----TCCACCACACAGGCAAT---CTAACGCTGACGAACAGCACAGGTCGCTTTGTCCTGAAGGAGGAC------
droKik1	scf7180000302472:1647295-1647478 -		GGTGACCTGCACCGTTTTAGGTACCAAGCCGCAGTTGTCGTGGACCTTTGGTGAGTCAGA-GTCT-GA-------------------G------CCTAAGT----------------CGGAATCAAAA----TTGAAACTTTAATCTAACTTG-------A-CGCTCTT-TCCCTTCC--ACCGCACTGCAGGCAAT---ATCACGCTGACGAACGCCACAGATCGGTTCGTCCTCAAGGAGGAC------
droFic1	scf7180000454115:974367-974536 +		GGTGACCTGCAGCGTTGTTGGTACCGATCCCCAGTTGTCATGGACCTTTGGTGAGTCCAT-CT---TT----------------AA-ATGATCTCCCATTA----------------CTGGACTCGA-----------------TTTAATTCT-------GCTT---TA-----------TTTGGTTTGCAGGCAAT---GTAACGCTGACAAACTCCACAGATCGTTACATCCTCAAGGCGGACGAG---
droEle1	scf7180000491046:2702810-2702977 +		GGTGACTTGCACCGTTGTGGGTACCGCACCACAGTTGATATGGACTTTTGGTGAGTTTTT-CTTT-TT-------------------CAAACACCCCTCCA----------------AGAAATAAGA-----------------TTTAACTCG-------ATTGC--AT-----------TCCTTTCCGCAGGCAAT---GTAACGCTGACAAACTCAACGGATCGCTTCGTCCTCAAACCAGAA------
droRho1	scf7180000779695:87328-87491 +		GGTGACCTGCACCGTTGTGGGAACCGACCCACAGTTGTCATGGACTTTCGGTGAGTTCTCTAACCAT----------------------------TCATCT----------------GGAAATTAAA-----------------TTTAACTTG-------GGTGA--AT-----------TTCTTCCTGCAGGCAAT---GTTACGCTGACGAACGCCACAGATCGCTTCGTCCTTAAACCGGATAAC---
droBia1	scf7180000301518:411087-411265 -		GGTGACCTGCACCGTCGTGGGAACCGATCCCCAATTGACTTGGACCTTTGGTGAGTCATCCAACCCCT-------------TCTTTGCGATGTCCCCAGAT----------------CGAAATCCGT-----------------TTTAACT-----------------CATCTAACGAAATCCCTCTGGCAGGTAAC---GTAACGCTGACAAACGCCACAGACCGCTTCGTCCTCAAGCAGGAC------
droTak1	scf7180000415876:200152-200313 -		AGTGACCTGCACCGTTGTGGGAACCGATCCACAGTTGACATGGACCTTCGGTGAGTTTTTCAATCGCT----------------------------TTGAT----------------CGAAATGGGTT----------------TTTAACTCT-------GGTGC--AT-----------TCCTTTTGGCAGGCAAT---GTAACGCTGACGAACGCCACAGATCGCTTCGTCCTGAAACCGGAT------
droEug1	scf7180000409461:99200-99397 +		GGTGACCTGCACCGTCGTGGGAACTGACCCCCAGTTGTCATGGACCTTTGGTGAGTCCTTAAATCTCTCTCTCTCTGTCTCTCTTCTTGATCTCAACTGAG----------------GGAATTTGGT-----------------TTTAACTTG-------ACTGT--TT-TTTTC--T--ATATAACTACAGGCAAT---GTAACGCTGACAAACGCCACAGATCGCTTCGTCCTGAAAGCGGATGAT---
dm3	chr2L:8107124-8107290 +		GGTGACCTGCAGCGTTGTGGGTACCAAACCAGAGTTGACATGGACCTTTGGTGAGTAACC-ATCC-CT-------------------A-----CCTTGGTT----------------CGCAATTGGTT----------------TTTAACTTT-------GGTGC--TC-----------TTCTATCGACAGCCAAT---GTAACGCTGACAAATGCCACAGATCGCTTCATTCTCAAACCAGACGAT---
droSim2	2l:7834452-7834618 +	dsi_19957	GGTGACCTGCAGCGTTGTGGGTACCAATCCAGAGTTGACATGGACCTTTGGTGAGTATCC-ATTC-CT-------------------A-----CCTTGGTT----------------CGCAATTGGTT----------------TTTAACTTG-------GGTGC--TT-----------TTCTACCGACAGCCAAT---GTAACGCTGACAAACGCCACAGATCGCTTCATCCTCAAACCAGACGAT---
droSec2	scaffold_3:3603541-3603707 +		GGTGACCTGCAGTGTTGTGGGTACCAAACCAGAGTTGACATGGACCTTTGGTGAGTATCC-ATTC-CT-------------------A-----CCTTGGTT----------------CGCAATTGGTT----------------TTTAACTTT-------GGTGC--TC-----------TTCTACCGATAGCCAAT---GTAACGCTGACAAACGCCACAGATCGCTTCATCCTCAAACCAGACGAT---
droYak3	2L:10737794-10737961 +		GGTGACCTGCAGCGTTGTGGGAACCAAACCACAGTTGACATGGACCTTTGGTGAGTATAC-ATCC-CT-------------------AGTTCTCTTCGGTT----------------CGAAATTGGT-----------------TTTAACTGT-------GGTGC--TC-----------TTCTACCGACAGGCAAT---GTAACGCTGACAAACGACACAGATCGCGTCATCGTCAAACCAGAT------
droEre2	scaffold_4929:17012950-17013120 +		GGTGACCTGCAGCGTTGTGGGAACCAAACCTCAGTTGACATGGACCTTTGGTGAGTATCC-ATAC-CT-------------------ACTGCTCTTCAGTT----------------TGAAATCGGA-----------------TTTAACTGT-------GGTGC--TC-----------TTCTACCGACAGCCAAT---GTAACGCTGACAAACGGCACAGATCGCTTCATCCTCAAACCAGACGAT---
dp5	4_group4:959277-959443 -		AGTTACCTGCTCGGTCGTGGGTAGTGCACCACAATTGTCATGGACTTTTGGTAAGCCTAT-ATTA-TT----------------------------TGGTACTCGAAAGATCTGTGCGG-----GGAG----------------TTTAATTGT-------G------CG-----------TTTTGGTTTCAGGCAAT---GTAACGCTAAAAAACAATACAGATCGCTTTGTACTGAAAGCGGAC------
droPer2	scaffold_46:99794-99960 +		AGTTACCTGCTCGGTCGTGGGTAGTGCACCACAATTGTCATGGACTTTTGGTAAGCCCAT-ATTA-TT----------------------------TGGTGCTCGATAGATCTGTACGG-----GGAG----------------TTTAATTGT-------G------TA-----------TTTTGGTTTCAGGCAAT---GTAACGCTAAAAAACAATACAGATCGCTTTGTACTGAAAGCGGAC------
droWil2	scf2_1100000004521:6358254-6358412 +		GGTTACCTGCTCTGTTGTGGGCACAGAGCCACAATTGATATGGACTTACCGTAAGTTGTA-ACAA-C-----------------------------TGAAT----------------CGAAATGAGA-----------------A-TAACAT---------------TA-TCTCATCG--AATATTTTATAGGTAAC---CTAACGCTGAGAAACAGCACAGGTCGCTATATCCTGTCACCTAAT------
droVir3	scaffold_12963:16305163-16305276 +		AATGAACCAAA----------------GCAAATGTTGATAATAACCTTTGATT-----TC------TT-------------------A--------------------------------------------------------------------------CT---TA-----------TCTTATTTGCAGGCAATTACACAAATATAACAAACAGCACAGATCGTTATATACTAAAATCGGATGAT---
droMoj3	scaffold_6500:21244583-21244685 +		GAG---------------------TAAATCAGA---------------------------------------------------------------------------------------------T-----------------ACTAATTTCAATTTC-TTTTC--TT-----------CTTCTTACACAGGCAATTACACAAATGTCACAAATAGCACAGATCGTTATATATTGAAAGCGGATGAT---
droGri2	scaffold_15252:13730899-13730995 +		ATG----------------------------------AAAAAAATG--------------------------------------------------------------------------------------------------TTTAATATTC-----TC------AG-----------TTTTACATTCAGGCAATTACTCACAAGTAGCAAATAGCACAGGTCGTTATATACTGAAACCGGACGAGGAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GATAACCTGCGTGGTTGTGGGTACTGCACCACAATTGTCCTGGTCTTTTGGTGAGTATCT-ATCA-GA-------------------T-----TAATGGAT----------------TA-AATAGATATCAA-----------TAATAATCTG-------AAATT--TT-----------TTGGCAATACAGGCAAC---TTAACGCTGACAAACAGCACAGGCCGCTACGTCCTGAAGGAGGAC------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................AATTGTCCTGGTCTTTTGGC.......................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0
.................................ATTGTCCTGGTCTTTTGGC.......................................................................................................................................................................................................	19	1	2.00	2	1	1	0	0	0	0
.............................................................................................................................................................................................................................GGCCGCTACGTCCTGAAGGA..........	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................GCTGACAAACAGCACAGGCCGCTACG....................	26	1	1.00	1	1	0	0	0	0	0
..TAACCTGCGTGGTTGTGGGTA....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................TAACGCTGACAAACAGCACAGGCC..........................	24	1	1.00	1	0	1	0	0	0	0
....................GTACTGCACCACAATTGTCCTG.................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...AACCTGCGTGGTTGTGGGTACTG.................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................AGCACAGGCCGCTACGTC..................	18	1	1.00	1	0	1	0	0	0	0
..................GGGTACTGCACCACAATTGTCCTGGTCT.............................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
GATAACCTGCGTGGTTGTGGGTACTGC................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.......TGCGTGGTTGTGGGTACTGCACCACAAT........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................ACGCTGACAAACAGCACAGGCCGCTACG....................	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................AGCACAGGCCGCTACGTCCTGAAGGAG.........	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................GCTACGTCCTGAAGGAGG........	18	1	1.00	1	0	1	0	0	0	0
....ACCTGCGTGGTTGTGGGTACT..................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................CGCTACGTCCTGAAGGAGGA.......	20	1	1.00	1	0	1	0	0	0	0
..........................CACCACAATTGTCCTGGTC..............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................ACAGCACAGGCCGCTACGTCCTGAAGG...........	27	1	1.00	1	1	0	0	0	0	0
........................TGCACCACAATTGTCCTGGTC..............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................GCAAC---TTAACGCTGACAAAC....................................	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................AGGCCGCTACGTCCTGAAGGAGGA.......	24	1	1.00	1	0	0	1	0	0	0
.....CCTGCGTGGTTGTGGGTACTGCACC.............................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.................................ATTGTCCTGGTCTTTTGGCA......................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0

droBip1

GATAACCTGCGTCGTTGTGGGAACCGAGCCACAATTGTCGTGGTCCTTTGGTGAGTATCT-ATCG-GA-------------------T-----CGATCGAT------CGAT------CGCAA----T-----------------GCTAACTTCT------A-CGA-TTT-TCCTC-----TCCACCACACAGGCAAT---CTAACGCTGACGAACAGCACAGGTCGCTTTGTCCTGAAGGAGGAC------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGTGACCTGCACCGTTTTAGGTACCAAGCCGCAGTTGTCGTGGACCTTTGGTGAGTCAGA-GTCT-GA-------------------G------CCTAAGT----------------CGGAATCAAAA----TTGAAACTTTAATCTAACTTG-------A-CGCTCTT-TCCCTTCC--ACCGCACTGCAGGCAAT---ATCACGCTGACGAACGCCACAGATCGGTTCGTCCTCAAGGAGGAC------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGTGACCTGCAGCGTTGTTGGTACCGATCCCCAGTTGTCATGGACCTTTGGTGAGTCCAT-CT---TT----------------AA-ATGATCTCCCATTA----------------CTGGACTCGA-----------------TTTAATTCT-------GCTT---TA-----------TTTGGTTTGCAGGCAAT---GTAACGCTGACAAACTCCACAGATCGTTACATCCTCAAGGCGGACGAG---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGTGACTTGCACCGTTGTGGGTACCGCACCACAGTTGATATGGACTTTTGGTGAGTTTTT-CTTT-TT-------------------CAAACACCCCTCCA----------------AGAAATAAGA-----------------TTTAACTCG-------ATTGC--AT-----------TCCTTTCCGCAGGCAAT---GTAACGCTGACAAACTCAACGGATCGCTTCGTCCTCAAACCAGAA------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGTGACCTGCACCGTTGTGGGAACCGACCCACAGTTGTCATGGACTTTCGGTGAGTTCTCTAACCAT----------------------------TCATCT----------------GGAAATTAAA-----------------TTTAACTTG-------GGTGA--AT-----------TTCTTCCTGCAGGCAAT---GTTACGCTGACGAACGCCACAGATCGCTTCGTCCTTAAACCGGATAAC---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGTGACCTGCACCGTCGTGGGAACCGATCCCCAATTGACTTGGACCTTTGGTGAGTCATCCAACCCCT-------------TCTTTGCGATGTCCCCAGAT----------------CGAAATCCGT-----------------TTTAACT-----------------CATCTAACGAAATCCCTCTGGCAGGTAAC---GTAACGCTGACAAACGCCACAGACCGCTTCGTCCTCAAGCAGGAC------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGTGACCTGCACCGTTGTGGGAACCGATCCACAGTTGACATGGACCTTCGGTGAGTTTTTCAATCGCT----------------------------TTGAT----------------CGAAATGGGTT----------------TTTAACTCT-------GGTGC--AT-----------TCCTTTTGGCAGGCAAT---GTAACGCTGACGAACGCCACAGATCGCTTCGTCCTGAAACCGGAT------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGTGACCTGCACCGTCGTGGGAACTGACCCCCAGTTGTCATGGACCTTTGGTGAGTCCTTAAATCTCTCTCTCTCTGTCTCTCTTCTTGATCTCAACTGAG----------------GGAATTTGGT-----------------TTTAACTTG-------ACTGT--TT-TTTTC--T--ATATAACTACAGGCAAT---GTAACGCTGACAAACGCCACAGATCGCTTCGTCCTGAAAGCGGATGAT---	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGTGACCTGCAGCGTTGTGGGTACCAAACCAGAGTTGACATGGACCTTTGGTGAGTAACC-ATCC-CT-------------------A-----CCTTGGTT----------------CGCAATTGGTT----------------TTTAACTTT-------GGTGC--TC-----------TTCTATCGACAGCCAAT---GTAACGCTGACAAATGCCACAGATCGCTTCATTCTCAAACCAGACGAT---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......TGCAGCGTTGTGGGTACCAAACCAGA..........................................................................................................................................................................................................................	26	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	17	0	0	0	0	0
.......TGCAGCGTTGTGGGTACCA.................................................................................................................................................................................................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CCAGAGTTGACATGGACCTTTGCC.......................................................................................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAGAGTTGACATGGACCTTTGC........................................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GTAACGCTGACAAATGCCACAGATCG.........................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TGCAGCGTTGTGGGTACCAAACCAGAGT........................................................................................................................................................................................................................	28	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0
...............................................................................................................................................................................................................................TCGCTTCATTCTCAAACCAGACGAT---	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................A-----CCTTGGTT----------------CGCAATTGGTT----------------TTTAACTT...................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GACAAATGCCACAGATCGCTTCATTCTC...............	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGACAAATGCCACAGATCGCTTCATTC.................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TAACGCTGACAAATGCCACAGATCGAA.......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ACCAAACCAGAGTTGACATGGACCTT...........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCAGCGTTGTGGGTACCAAACCAGAG.........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................AGTTGACATGGACCTTTGCC.......................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGTGACCTGCAGCGTTGTGGGTACCAATCCAGAGTTGACATGGACCTTTGGTGAGTATCC-ATTC-CT-------------------A-----CCTTGGTT----------------CGCAATTGGTT----------------TTTAACTTG-------GGTGC--TT-----------TTCTACCGACAGCCAAT---GTAACGCTGACAAACGCCACAGATCGCTTCATCCTCAAACCAGACGAT---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................AT---GTAACGCTGACAAACGCC.................................	20	1	4.00	4	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAT---GTAACGCTGACAAACGCCACA..............................	24	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAT---GTAACGCTGACAAACGC..................................	20	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAT---GTAACGCTGACAAACG...................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTACCAATCCAGAGTTGACATGGAC..............................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ACAGATCGCTTCATCCTCAAACCAGAC......	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CGCCACAGATCGCTTCATCCTCAAAC...........	26	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................TACCAATCCAGAGTTGACATG.................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CCAGAGTTGACATGGACCTTTGCC.......................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TGTGGGTACCAATCCAGAGTTGACATG.................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................GCCAAT---GTAACGCTGACAAACGCCACA..............................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................T---GTAACGCTGACAAACGCCACA..............................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAT---GTAACGCTGACAAACGCCAC...............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ACAGATCGCTTCATCCTCAAACC..........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AACGCTGACAAACGCCACA..............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................CCAAT---GTAACGCTGACAAACGCC.................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GATCGCTTCATCCTCAAACCAGA.......	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAT---GTAACGCTGACAAACGCCA................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGATCGCTTCATCCTCAAACCAGAC......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................AAT---GTAACGCTGACAAACGCC.................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CAAT---GTAACGCTGACAAACGCC.................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AGTTGACATGGACCTTTGCC.......................................................................................................................................................................................................	20	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CCACAGATCGCTTCATCCTCAA.............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....CCTGCAGCGTTGTGGGTACC..................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CAAT---GTAACGCTGACAAACGC..................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CAAACGCCACAGATCGCTTCATCC.................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GATCGCTTCATCCTCAAACCAGACG.....	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AAACGCCACAGATCGCTTCA....................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CGCCACAGATCGCTTCATC..................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GTAACGCTGACAAACGCC.................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGGGTACCAATCCAGAGTTGACATGGA...............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................GTTGACATGGACCTTTGCC.......................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGTGACCTGCAGTGTTGTGGGTACCAAACCAGAGTTGACATGGACCTTTGGTGAGTATCC-ATTC-CT-------------------A-----CCTTGGTT----------------CGCAATTGGTT----------------TTTAACTTT-------GGTGC--TC-----------TTCTACCGATAGCCAAT---GTAACGCTGACAAACGCCACAGATCGCTTCATCCTCAAACCAGACGAT---	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......TGCAGTGTTGTGGGTACCA.................................................................................................................................................................................................................................	19	1	2.00	2	1	1	0	0
........................................................................................................................................................................................................GTAACGCTGACAAACGCCACAGATC..........................	25	1	2.00	2	2	0	0	0
...GACCTGCAGTGTTGTGGG......................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
.......TGCAGTGTTGTGGGTACCAA................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................ATCCTCAAACCAGACGAT---	18	1	1.00	1	0	0	1	0
.......TGCAGTGTTGTGGGTACCAAACCAG...........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..........AGTGTTGTGGGTACCAAACCAGA..........................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................AAT---GTAACGCTGACAAACGC..................................	20	1	1.00	1	1	0	0	0
.........................AAACCAGAGTTGACATGGAC..............................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................GACAAACGCCACAGATCGCTTCATC..................	25	1	1.00	1	1	0	0	0
...GACCTGCAGTGTTGTGGGT.....................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
......................ACCAAACCAGAGTTGACATGG................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.........................AAACCAGAGTTGACATGGA...............................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................AACGCCACAGATCGCTTC.....................	18	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................CTTCATCCTCAAACCAGACGAT---	22	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................CACAGATCGCTTCATCCTC...............	19	1	1.00	1	1	0	0	0
.....................................................................................................................................................CTTT-------GGTGC--TC-----------TTCTACCGATAG...........................................................	23	1	1.00	1	0	0	0	1
..........AGTGTTGTGGGTACCAAACCAGAGTT.......................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................AAACGCCACAGATCGCTTC.....................	19	1	1.00	1	0	0	1	0
..................GGGTACCAAACCAGAGTTGAC....................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..............................AGAGTTGACATGGACCTTTGCC.......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0

droYak3

GGTGACCTGCAGCGTTGTGGGAACCAAACCACAGTTGACATGGACCTTTGGTGAGTATAC-ATCC-CT-------------------AGTTCTCTTCGGTT----------------CGAAATTGGT-----------------TTTAACTGT-------GGTGC--TC-----------TTCTACCGACAGGCAAT---GTAACGCTGACAAACGACACAGATCGCGTCATCGTCAAACCAGAT------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................GACAAACGACACAGATCGCGT......................	21	1	32.00	32	0	0	0	1	0	0	31	0	0	0	0
.......................................................................................................................................................................................................................GACACAGATCGCGTCATCGT................	20	1	7.00	7	0	1	0	0	0	0	6	0	0	0	0
...............................................................................................................................................................................................................TGACAAACGACACAGATCGCGT......................	22	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................................GCTGACAAACGACACAGATCGCGT......................	24	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
........................................................................................................................................................................................................GTAACGCTGACAAACGACACAGATCGCGT......................	29	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
...GACCTGCAGCGTTGTGGGAACC..................................................................................................................................................................................................................................	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.......TGCAGCGTTGTGGGAACCAAACCACA..........................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................................CTGACAAACGACACAGATCGCGT......................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................................GTTGACATGGACCTTTGGCA......................................................................................................................................................................................................	20	3	1.33	4	4	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAT---GTAACGCTGACAAACGACA................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CAAACGACACAGATCGCGTCATC..................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACGACACAGATCGCGTCATCGT................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................GACACAGATCGCGTCATCGTCA..............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......CTGCAGCGTTGTGGGAACCAAACCACA..........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................ACAAACGACACAGATCGCGTCATC..................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CAAACGACACAGATCGCGTCATCGTC...............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CACAGATCGCGTCATCGTCA..............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................AAACGACACAGATCGCGTCATC..................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................AACCACAGTTGACATGGACCTTTG.........................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AACGACACAGATCGCGTCATC..................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CAAT---GTAACGCTGACAAACG...................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................GTGGGAACCAAACCACAGTTGACAT..................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AACGACACAGATCGCGTCATCGT................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................CACAGTTGACATGGACCTTTGG........................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GTAACGCTGACAAACGACACAGATCGC........................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................ACACAGATCGCGTCATCGTC...............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......CTGCAGCGTTGTGGGAACCAAACCAC...........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................CAGATCGCGTCATCGTCAAACCAG........	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................GAACCAAACCACAGTTGAC....................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................AACCACAGTTGACATGGACCTTT..........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......TGCAGCGTTGTGGGAACCA.................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....CCTGCAGCGTTGTGGGAACCAAACCAC...........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................GACAAACGACACAGATCGCGTCATCGT................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................AAACGACACAGATCGCGTCATCGT................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................AAACGACACAGATCGCGTCATCGTC...............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CACAGATCGCGTCATCGTCAAAC...........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................CCAAACCACAGTTGACATGGACCTTT..........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........AGCGTTGTGGGAACCAAACCAC...........................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................GTTGACATGGACCTTTGGC.......................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CAGATCGCGTCATCGTCAAACCA.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........GCAGCGTTGTGGGAACCAAACCACAGTT.......................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................GACACAGATCGCGTCATC..................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GCTGACAAACGACACAGATCGCGTCATC..................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GACACAGATCGCGTCATCGTC...............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................GACAAACGACACAGATCGCGTC.....................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................ACAAACGACACAGATCGCGT......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................TTGACATGGACCTTTGGCA......................................................................................................................................................................................................	19	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

GGTGACCTGCAGCGTTGTGGGAACCAAACCTCAGTTGACATGGACCTTTGGTGAGTATCC-ATAC-CT-------------------ACTGCTCTTCAGTT----------------TGAAATCGGA-----------------TTTAACTGT-------GGTGC--TC-----------TTCTACCGACAGCCAAT---GTAACGCTGACAAACGGCACAGATCGCTTCATCCTCAAACCAGACGAT---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................GACAAACGGCACAGATCGCTT......................	21	1	2.00	2	1	0	0	0	1	0	0
................................................................................................................................................................................................................GACAAACGGCACAGATCGCTTC.....................	22	1	2.00	2	0	1	0	0	1	0	0
...GACCTGCAGCGTTGTGGG......................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
....................................................................................................................................................................................................................AACGGCACAGATCGCTTCATCC.................	22	1	2.00	2	2	0	0	0	0	0	0
........................CAAACCTCAGTTGACATGGACC.............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.............GTTGTGGGAACCAAACCTCAGTTGACAT..................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................T---GTAACGCTGACAAACGGCACA..............................	22	1	1.00	1	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................CAGATCGCTTCATCCTCAAACCA.........	23	1	1.00	1	1	0	0	0	0	0	0
.GTGACCTGCAGCGTTGTGGGAACCA.................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................TGACAAACGGCACAGATCGCTTCAT...................	25	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................GACAAACGGCACAGATCGCT.......................	20	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................ACAAACGGCACAGATCGCTTCATC..................	24	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................CAAACGGCACAGATCGCTTCAT...................	22	1	1.00	1	0	0	0	0	0	1	0
.......TGCAGCGTTGTGGGAACCAAAC..............................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
...........................ACCTCAGTTGACATGGACCTTTTC........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
......CTGCAGCGTTGTGGGAACC..................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.......TGCAGCGTTGTGGGAACCAAACCTCAGTT.......................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................AACGGCACAGATCGCTTCATCCT................	23	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................CACAGATCGCTTCATCCTCAA.............	21	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................GCACAGATCGCTTCATCCTCAAACC..........	25	1	1.00	1	1	0	0	0	0	0	0
........................CAAACCTCAGTTGACATGGA...............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................CTCAGTTGACATGGACCTTTGCCA......................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................AAACGGCACAGATCGCTTCATCCTC...............	25	1	1.00	1	0	1	0	0	0	0	0
......CTGCAGCGTTGTGGGAACCAAACCTCA..........................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................GACAAACGGCACAGATCGCTTCATCCT................	27	1	1.00	1	1	0	0	0	0	0	0
....................GAACCAAACCTCAGTTGACAT..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
......................ACCAAACCTCAGTTGACAT..................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0

dp5

AGTTACCTGCTCGGTCGTGGGTAGTGCACCACAATTGTCATGGACTTTTGGTAAGCCTAT-ATTA-TT----------------------------TGGTACTCGAAAGATCTGTGCGG-----GGAG----------------TTTAATTGT-------G------CG-----------TTTTGGTTTCAGGCAAT---GTAACGCTAAAAAACAATACAGATCGCTTTGTACTGAAAGCGGAC------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................ATACAGATCGCTTTGTACTGAAAGC..........	25	1	3.00	3	0	1	1	0	1	0	0	0	0	0
.................................ATTGTCATGGACTTTTGGC.......................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AACGCTAAAAAACAATACAGATCGC........................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........TCGGTCGTGGGTAGTGCACCAC...........................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................ACAATTGTCATGGACTTTTGGC.......................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TACAGATCGCTTTGTACTGAAAGC..........	24	1	2.00	2	0	1	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................AAACAATACAGATCGCTTT.....................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CAATACAGATCGCTTTGTACTGAAAGC..........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AATACAGATCGCTTTGTACTGAAAGC..........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............GGTCGTGGGTAGTGCACCACAATTGTC....................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CTAAAAAACAATACAGATCGCT.......................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................AAAAAACAATACAGATCGCTTTGTACT................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACAATACAGATCGCTTTGTACT................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ACAGATCGCTTTGTACTGAAA............	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................TACAGATCGCTTTGTACTGAAAGCGGA.......	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TCGCTTTGTACTGAAAGCGGAC------	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................TTTGTACTGAAAGCGGAC------	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..TTACCTGCTCGGTCGTGGGT.....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................ATACAGATCGCTTTGTACT................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...TACCTGCTCGGTCGTGGGT.....................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................AACGCTAAAAAACAATACAGATCGCTTT.....................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................ATACAGATCGCTTTGTACTGAAAGCGGA.......	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............GGTCGTGGGTAGTGCACCACA..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................ACAGATCGCTTTGTACTGAAAGC..........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AAAACAATACAGATCGCTTTGTACT................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................AAAAAACAATACAGATCGCTTTGT...................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AAAACAATACAGATCGCTTTGTAC.................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AATACAGATCGCTTTGTACTGAAAG...........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GTAGTGCACCACAATTGTCATGGAC..............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............GGTCGTGGGTAGTGCACC.............................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................CACCACAATTGTCATGGACT.............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACAATACAGATCGCTTTGT...................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................AGTGCACCACAATTGTCATGG................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....CCTGCTCGGTCGTGGGTAGTGCACCACA..........................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............GTCGTGGGTAGTGCACCACA..........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................GTGCACCACAATTGTCATGGACTTTT..........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CGTGGGTAGTGCACCACAATTGTC....................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................GTGCACCACAATTGTCATGGACTTTTGG........................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
AGTTACCTGCTCGGTCGTGGGT.....................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGTTACCTGCTCGGTCGTGGGTAGTGCACCACAATTGTCATGGACTTTTGGTAAGCCCAT-ATTA-TT----------------------------TGGTGCTCGATAGATCTGTACGG-----GGAG----------------TTTAATTGT-------G------TA-----------TTTTGGTTTCAGGCAAT---GTAACGCTAAAAAACAATACAGATCGCTTTGTACTGAAAGCGGAC------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................ATACAGATCGCTTTGTACTGAAAGC..........	25	1	13.00	13	10	0	0	0	0	3
..........................CACCACAATTGTCATGGACT.............................................................................................................................................................................................................	20	1	6.00	6	6	0	0	0	0	0
..........................CACCACAATTGTCATGGACTTTT..........................................................................................................................................................................................................	23	1	5.00	5	5	0	0	0	0	0
.......................GTGCACCACAATTGTCATGGACT.............................................................................................................................................................................................................	23	1	5.00	5	5	0	0	0	0	0
.......................GTGCACCACAATTGTCATGGAC..............................................................................................................................................................................................................	22	1	4.00	4	4	0	0	0	0	0
..........................................................................................................................................................................................................................ACAGATCGCTTTGTACTGAAAG...........	22	1	4.00	4	4	0	0	0	0	0
.................................ATTGTCATGGACTTTTGGC.......................................................................................................................................................................................................	19	1	4.00	4	3	1	0	0	0	0
.......................GTGCACCACAATTGTCATGGACTT............................................................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
..........................................................................................................................................................................................................................ACAGATCGCTTTGTACTG...............	18	1	2.00	2	2	0	0	0	0	0
.....CCTGCTCGGTCGTGGGTA....................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................AACAATACAGATCGCTTTGTACTGG..............	25	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................CAAT---GTAACGCTAAAAAACA...................................	20	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................ACAGATCGCTTTGTACTGAAAGC..........	23	1	2.00	2	2	0	0	0	0	0
.............................CACAATTGTCATGGACTTTT..........................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................AACAATACAGATCGCTTTGTACTGAAAGC..........	29	1	2.00	2	2	0	0	0	0	0
...........................ACCACAATTGTCATGGACTTTT..........................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................AAAAACAATACAGATCGCT.......................	19	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................ATACAGATCGCTTTGTACT................	19	1	2.00	2	2	0	0	0	0	0
..........................CACCACAATTGTCATGGACG.............................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................TAGTGCACCACAATTGTCATGGACTTTT..........................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
AGTTACCTGCTCGGTCGTGGG......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................GTAGTGCACCACAATTGTC....................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................AATACAGATCGCTTTGTACTGAAAGC..........	26	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................ACAGATCGCTTTGTACTGAA.............	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................AAAAACAATACAGATCGCG.......................	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................AAAAACAATACAGATCGCTT......................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................TACAGATCGCTTTGTACTGAAAGC..........	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................TACAGATCGCTTTGTACTGAAAGCGGAC------	28	1	1.00	1	1	0	0	0	0	0
............GGTCGTGGGTAGTGCACCAC...........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.GTTACCTGCTCGGTCGTGG.......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................ACAGATCGCTTTGTACTGAAA............	21	1	1.00	1	0	0	0	0	0	1
....................GTAGTGCACCACAATTGTCATGGAC..............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................AAAAACAATACAGATCGCTTTGTACT................	26	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................ATACAGATCGCTTTGTACTGAAAGCGGAC------	29	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................AAACAATACAGATCGCTTTGTACTGAAAG...........	29	1	1.00	1	1	0	0	0	0	0

droWil2

GGTTACCTGCTCTGTTGTGGGCACAGAGCCACAATTGATATGGACTTACCGTAAGTTGTA-ACAA-C-----------------------------TGAAT----------------CGAAATGAGA-----------------A-TAACAT---------------TA-TCTCATCG--AATATTTTATAGGTAAC---CTAACGCTGAGAAACAGCACAGGTCGCTATATCCTGTCACCTAAT------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................AATTGATATGGACTTACCGT.......................................................................................................................................................................................................	20	1	4.00	4	0	0	2	2	0
...............................CAATTGATATGGACTTACC.........................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0
..................................................................................................................................................................................................AAC---CTAACGCTGAGAAACA...................................	19	1	2.00	2	0	0	0	2	0
..............................ACAATTGATATGGACTTACCGT.......................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
...............................CAATTGATATGGACTTACCGT.......................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
......................ACAGAGCCACAATTGATATGGACTTACC.........................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0	0
...TACCTGCTCTGTTGTGGGCACAGA................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	1	0
...........CTGTTGTGGGCACAGAGCCACA..........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
GGTTACCTGCTCTGTTGTGG.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...TACCTGCTCTGTTGTGGGCAC...................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................GAGAAACAGCACAGGTCGCTAT.....................	22	1	1.00	1	0	0	0	1	0
..................GGGCACAGAGCCACAATTGATATGGAC..............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
.........................GAGCCACAATTGATATGGACT.............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...TACCTGCTCTGTTGTGGGCACA..................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................TAAC---CTAACGCTGAGAAACA...................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................GAGAAACAGCACAGGTCGCTATATCCT................	27	1	1.00	1	0	0	0	1	0
...TACCTGCTCTGTTGTGGGCACAGAG...............................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.........................GAGCCACAATTGATATGGACTTACCGT.......................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
..........................AGCCACAATTGATATGGACTTACCGTA......................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
....................GCACAGAGCCACAATTGA.....................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...TACCTGCTCTGTTGTGGGCACAGAGC..............................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.................................ATTGATATGGACTTACCGT.......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
....................GCACAGAGCCACAATTGAT....................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..................................................GTAAGTTGTA-ACAA-C-----------------------------TGAAT----------------CGA...................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.......TGCTCTGTTGTGGGCACAGAGCCACAATT.......................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................AC---CTAACGCTGAGAAACA...................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................AACGCTGAGAAACAGCACAGGTCGCT.......................	26	1	1.00	1	0	1	0	0	0
...TACCTGCTCTGTTGTGGGCA....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................CACAGAGCCACAATTGATATGG................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..................................TTGATATGGACTTACCGTAAC....................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
................................AATTGATATGGACTTACCGTAACC...................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................GCACAGGTCGCTATATCCT................	19	1	1.00	1	0	0	0	1	0
..........................AGCCACAATTGATATGGACT.............................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
...........CTGTTGTGGGCACAGAGCCACAATT.......................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.....................CACAGAGCCACAATTGATATG.................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................GAGAAACAGCACAGGTCG.........................	18	1	1.00	1	0	1	0	0	0
.GTTACCTGCTCTGTTGTGGGCACAGAG...............................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
......................ACAGAGCCACAATTGATATGGAC..............................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
GGTTACCTGCTCTGTTGTGGGCACAGAGC..............................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0
...TACCTGCTCTGTTGTGGGCACAGAA...............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0

droVir3

AATGAACCAAA----------------GCAAATGTTGATAATAACCTTTGATT-----TC------TT-------------------A--------------------------------------------------------------------------CT---TA-----------TCTTATTTGCAGGCAATTACACAAATATAACAAACAGCACAGATCGTTATATACTAAAATCGGATGAT---	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................AAACAGCACAGATCGTTAT.....................	19	2	1.50	3	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................AACAAACAGCACAGATCGTT.......................	20	2	1.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................ATAACAAACAGCACAGATCGTT.......................	22	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0
....................................................................................................................................................................................................................................ATATACTAAAATCGGATGAT---	20	2	1.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AACAGCACAGATCGTTATA....................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................ATATAACAAACAGCACAGATCG.........................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TACACAAATATAACAAACAG..................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TAACAAACAGCACAGATCGTT.......................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................TATAACAAACAGCACAGATCGT........................	22	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AACAGCACAGATCGTTATATACTA...............	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................ATATAACAAACAGCACAGATCGTTAT.....................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................AACAAACAGCACAGATCGTTAT.....................	22	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AATATAACAAACAGCACAGATCGTTAT.....................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AATATAACAAACAGCACAG.............................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCACAGATCGTTATATACTA...............	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

GAG---------------------TAAATCAGA---------------------------------------------------------------------------------------------T-----------------ACTAATTTCAATTTC-TTTTC--TT-----------CTTCTTACACAGGCAATTACACAAATGTCACAAATAGCACAGATCGTTATATATTGAAAGCGGATGAT---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................................................................................................CACAAATAGCACAGATCGTT.......................	20	1	4.00	4	3	0	0	0	0	1
..............................................................................................................................................................................................................GTCACAAATAGCACAGATC..........................	19	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................ATATATTGAAAGCGGATG.....	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................ACAGATCGTTATATATTGAAAGC..........	23	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................GTCACAAATAGCACAGATCGT........................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................CACAGATCGTTATATATTGAAAGC..........	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................AATTACACAAATGTCACAAATAGC.................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................CACAAATAGCACAGATCGTTATATATT................	27	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................CAAATAGCACAGATCGTTAT.....................	20	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................TCACAAATAGCACAGATCGTT.......................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................ACAAATAGCACAGATCGTTAT.....................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................AAATGTCACAAATAGCACAGATCGTT.......................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................GTCACAAATAGCACAGATCGTT.......................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................ACAAATAGCACAGATCGTT.......................	19	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................ACAGATCGTTATATATTGAAAGCGGAT......	27	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................GTTATATATTGAAAGCGGATG.....	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................GCACAGATCGTTATATATTGAAAGCGG........	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................CACAGATCGTTATATATTGAAAGCGGAT......	28	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................CACAAATAGCACAGATCGTTAT.....................	22	1	1.00	1	0	0	1	0	0	0

droGri2

ATG----------------------------------AAAAAAATG--------------------------------------------------------------------------------------------------TTTAATATTC-----TC------AG-----------TTTTACATTCAGGCAATTACTCACAAGTAGCAAATAGCACAGGTCGTTATATACTGAAACCGGACGAGGAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................AATAGCACAGGTCGTTATATACTG...............	24	1	2.00	2	1	1
............................................................................................................................................................................................................AAGTAGCAAATAGCACAGGTCGTT.......................	24	1	1.00	1	0	1
.........................................................................................................................................................................................CATTCAGGCAATTACTCACAAGTAG.........................................	25	1	1.00	1	0	1
.....................................................................................................................................................................................................................ATAGCACAGGTCGTTATATACT................	22	1	1.00	1	0	1
......................................................................................................................................................................................................ACTCACAAGTAGCAAATAGCACAGGTC..........................	27	1	1.00	1	1	0
....................................................................................................................................................................................................................AATAGCACAGGTCGTTATAT...................	20	1	1.00	1	0	1
.....................................................................................................................................................................................................................ATAGCACAGGTCGTTATATA..................	20	1	1.00	1	0	1

dan_520

scaffold_12916:4350875-4350942 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads