ID:

dan_51

 Coordinate:

scaffold_13117:3891818-3891882 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.8 -41.8 -41.8

Flybase annnotation

utr5 [utr5_plus_14911]

No Repeatable elements found

Sense Strand Reads

CGCCACGTTGTTTCGCTGCATGTGAGAAAATTCCGTGGCTGGCATCGTTCACTGTAAATTGTAACCATCAAAGCGTTTTTTATCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCTGGAGCACATATTAAAAAAAAAATAAATAAAAAATAAAAAT

***********************************.(((((((.(((((((((((((...(((((.(((((.(((.((((....)))).)))))))))))))...))))))))))))))))))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total V106

head

 M058

embryo

 M044

female body

 V055

head

 V039

embryo

 V105

male body
............................................................................................TTGGTGTTACTTCTTACAGTGA................................................... 22 0 1 223.00 223 101 78 18 10 12 4
............................................................................................TTGGTGTTACTTCTTGCAGTGA................................................... 22 1 1 200.00 200 117 26 37 12 3 5
............................................................................................TTGGTGTTGCTTCTTGCAGTGA................................................... 22 2 1 52.00 52 45 0 2 3 0 2
............................................................................................TTGGTGTTACTTCTTGCAGTG.................................................... 21 1 1 48.00 48 40 1 2 3 1 1
..................................................ACTGTAAATTGTAACCATCAAAGC........................................................................................... 24 0 1 29.00 29 12 15 1 1 0 0
............................................................................................TTGGTGTTACTTCTTACAGTG.................................................... 21 0 1 26.00 26 19 3 1 1 1 1
............................................................................................TTGGTGTTACTTCTTGCAGT..................................................... 20 1 1 17.00 17 15 0 1 0 0 1
............................................................................................TTGGTGTTACTTCTTGCGGTGA................................................... 22 2 1 16.00 16 12 0 4 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAGTGT................................................... 22 2 1 15.00 15 13 0 0 2 0 0
............................................................................................TGGGTGTTACTTCTTACAGTGA................................................... 22 1 1 13.00 13 0 12 0 1 0 0
............................................................................................TTGGTGTTACTTCTTGCAGTGAA.................................................. 23 2 1 8.00 8 5 0 1 2 0 0
..................................................ACTGTAAATTGTAACCATCAAAG............................................................................................ 23 0 1 6.00 6 5 1 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAGTGAAA................................................. 24 3 1 5.00 5 3 0 2 0 0 0
............................................................................................TGGGTGTTACTTCTTGCAGTGA................................................... 22 2 1 5.00 5 0 5 0 0 0 0
.............................................................................................TGGTGTTACTTCTTACAGTGA................................................... 21 0 1 5.00 5 1 0 4 0 0 0
..................................................ACTGTAAATTGTAACCATCA............................................................................................... 20 0 1 4.00 4 3 0 1 0 0 0
............................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................. 23 1 1 3.00 3 0 2 1 0 0 0
...........................................................................................CTTGGTGTTACTTCTTACAGTGA................................................... 23 0 1 3.00 3 0 3 0 0 0 0
.............................................................................................TGGTGTTACTTCTTGCAGTGA................................................... 21 1 1 3.00 3 0 0 3 0 0 0
............................................................................................TTGGTGTTACTTCTTACAGTGAAA................................................. 24 2 1 3.00 3 1 2 0 0 0 0
............................................................................................TTTGTGTTACTTCTTGCAGTGA................................................... 22 2 1 3.00 3 2 0 0 0 0 1
..................................................ACTGTAAATTGTAACCATCAAA............................................................................................. 22 0 1 3.00 3 3 0 0 0 0 0
..................................................GCTGTAAATTGTAATCATCAAAGC........................................................................................... 24 2 1 3.00 3 0 3 0 0 0 0
...........................................................................................CTTGGTGTTACTTCTTACAGTG.................................................... 22 0 1 3.00 3 1 0 0 1 1 0
..................................................AGTGTAAATTGTAACCATCAAAGC........................................................................................... 24 1 1 3.00 3 0 3 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAG...................................................... 19 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACAGTGC................................................... 22 1 1 2.00 2 0 1 0 0 1 0
.............................................................................................TGGTGTTACTTCTTGCAGTG.................................................... 20 1 1 2.00 2 0 0 2 0 0 0
..................................................ACTGTAGATTGTAACCATCAAA............................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACATTGA................................................... 22 1 1 2.00 2 1 0 0 0 1 0
............................................................................................TTGGTGTTACTTCTTGCAGTGTT.................................................. 23 3 1 2.00 2 2 0 0 0 0 0
..........................................................................GTTTTTTATCAGAGCCGC......................................................................... 18 0 1 2.00 2 0 2 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACAGT..................................................... 20 0 1 2.00 2 1 0 0 1 0 0
............................................................................................TTGGTGTTACTTCTTGCAGTA.................................................... 21 2 1 2.00 2 1 0 0 0 0 1
............................................................................................TTGGTTTTACTTCTTACAGTGA................................................... 22 1 1 2.00 2 1 1 0 0 0 0
...........................................................................................CTTGGTGTTACTTCTTACAGTGT................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGGGTGTTACTTCTTCCAGCGA................................................... 22 3 1 1.00 1 0 0 0 0 1 0
............................................................................................TTGGCGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACAGTTAA.................................................. 23 2 1 1.00 1 0 0 0 0 1 0
............................................................................................TTGGTGTTGCTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................ACTGTAAATTGTAACCATCAA.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................................CTGGTGTTACTTCTTGCAGTG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACGGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................CTGGTGTTACTTCTTGCAGTGAA.................................................. 23 3 1 1.00 1 0 1 0 0 0 0
............................................................................................TTGGTGTTGCTTCTTGCAGTGAA.................................................. 23 3 2 1.00 2 2 0 0 0 0 0
............................................................................................TTTGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................ACTGTAAATTGTAACCATCAAAGT........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACATCTTACAGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTGGTGTTACTTATTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAACCATCAA.............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCATTG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCGGTGT................................................... 22 3 2 1.00 2 1 0 0 0 0 1
............................................................................................TCGGTGTTACTTCTTACAGTGAAA................................................. 24 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGGTACTTCTTACAGTGAA.................................................. 23 2 1 1.00 1 0 0 0 0 1 0
............................................................................................TTGGTTTTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGGGTTACTTATTACACTGA................................................... 22 3 1 1.00 1 0 0 0 1 0 0
............................................................................................TCGTTGTTACTTCTTACAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACACTGA................................................... 22 1 1 1.00 1 0 0 0 0 1 0
............................................................................................TTAGTGTTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTATAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGAAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGGGTTACTTCTTGCAGTG.................................................... 21 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TTGGTGTTACTTCTTTCAGTGATAG................................................ 25 3 1 1.00 1 1 0 0 0 0 0
..................................................ACTGTAACTTGTAACCATCAACGC........................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAATGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAGTGATT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TAGGTGTTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTGCTTCTTGCAGTG.................................................... 21 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TTGGTGTTACTTCTTACAGTA.................................................... 21 1 1 1.00 1 0 0 0 0 1 0
............................................................................................TCGGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
............................................................................................TTGGTGTCACTTCTTACAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAGTGACA................................................. 24 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACCTCTTGCAGTG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTAATTCTTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGAGTTACTTCTTACAG...................................................... 19 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAGTGAAT................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................GGTGTTACTTCTTGCAGTGA................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAGCGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTTGTGTTACTTCTTGCAGTG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAGTCA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCGGTG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGTAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGGGTTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 0 0 0 1 0 0
............................................................................................ATGGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTGGTGTTACTTCTTACAGTGT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAGTGAC.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGAGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................GGGTGTTACTTCTTACAGTGA................................................... 21 1 1 1.00 1 0 0 1 0 0 0
............................................................................................TTGGTGTTACTTCTTACAG...................................................... 19 0 1 1.00 1 0 0 1 0 0 0
..................................................ACTGTAAATTGTAACCATCAAAGCT.......................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTGGTGTTACTTCTTGCAGTCAA.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
.............................................................................................TGGTGTTAGTTCTTGCAGTGA................................................... 21 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TTCGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTTGTGTTGCTTCTTGCAGTGA................................................... 22 3 3 0.67 2 2 0 0 0 0 0
............................................................................................TTGGTGTTGCTTCTTGCAGT..................................................... 20 2 3 0.67 2 2 0 0 0 0 0
............................................................................................CTGGTGTTACTTCTCGCAGTGA................................................... 22 3 2 0.50 1 0 0 0 0 1 0
............................................................................................TTGGTGTTACTTCTTGCAGTTA................................................... 22 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................................TACACTGACTGAGCCAGC......................................... 18 2 6 0.50 3 0 1 1 0 0 1
............................................................................................TTGGTGTTACTTCTTACCTTTA................................................... 22 3 2 0.50 1 0 0 0 0 1 0
............................................................................................TTGCTGTTACTTCTTGCGGTGA................................................... 22 3 2 0.50 1 1 0 0 0 0 0
............................................................................................TTGGTTTTACTTCTTGCGGTGA................................................... 22 3 2 0.50 1 0 0 1 0 0 0
............................................................................................TTGGTGTTACTTCTTTCAGTGT................................................... 22 2 2 0.50 1 1 0 0 0 0 0
............................................................................................TTGGTGTTGCTTCTTGCAGTGG................................................... 22 3 3 0.33 1 1 0 0 0 0 0
..........................................................................................................TACACTGACGGAGCCAGCT........................................ 19 3 14 0.07 1 0 0 0 0 0 1

Anti-sense strand reads

GCGGTGCAACAAAGCGACGTACACTCTTTTAAGGCACCGACCGTAGCAAGTGACATTTAACATTGGTAGTTTCGCAAAAAATAGTCTCGGCGAACCACAATGAAGAATGTCACTCACTCGGTCGACCTCGTGTATAATTTTTTTTTTATTTATTTTTTATTTTTA

************************************.(((((((.(((((((((((((...(((((.(((((.(((.((((....)))).)))))))))))))...))))))))))))))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M044

female body

 V055

head
......................................................................................................AAGAACGTCACTCATTCGGT........................................... 20 2 1 2.00 2 2 0
.....................................................................................................CAAGAACGTCACTCATTCGGT........................................... 21 3 2 0.50 1 1 0
..........................................GTAGAAAGTGACATTCATCAT...................................................................................................... 21 3 3 0.33 1 0 1
........................................................................................................GAACGTCACTCATTCGGTCTA........................................ 21 3 4 0.25 1 1 0
..................................GATCGACCGTAGCAAGTAACA.............................................................................................................. 21 3 6 0.17 1 0 1
......................................................................................TCCGCGAACCACAGTGAGG............................................................ 19 3 13 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13117:3891768-3891932 + dan_51 confident CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCATCGTTCACTGTAAATTGTAACCATCAAAGCGTTTTTTATC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCTG--GAGCACATATT-------AAAAAA--A------------------------------------AAATA----AA--------TAAA----AAATAAAAAT
droBip1 scf7180000396383:483130-483307 - CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCATCGTTCACTGTAAATTGTAACCATCAAAGCGTTTTTTATC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCTG--GAGCACACATTTAACTGAAAAAGACTAAAAC------------------------------CT----AAAAAA-AAAAAGC-------------AAGAAT
droKik1 scf7180000302544:775459-775606 - CGCCGCGTT--------------CAGAGCGAAA--------TTCCTTGGCTGGCAGCGCACACTGTAAATTGTAATCATCAAAGCGTTTTTC-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGCGCCAGTACACGTACACACGG---------CAAGA--AAG-----AACCT-------------------------------------------TAAA----AAGT----A-
droFic1 scf7180000454050:893092-893243 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AA---------AGAGA--AAA-----CCCCA-----------------------------------------TATGA--------A----A-
droEle1 scf7180000490546:934538-934694 - CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTTC-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGCCC--GTACAC--AG---------AAAGA--AATA--------------------A----------A-AACTC----A-------T-TG------------AAAT
droRho1 scf7180000779914:464148-464290 - CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGTTCGCTGTAAATTGTAATCATCAAAGCGTTTTTT-TC--AGAACCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----CT----------------------------------------------------------------
droBia1 scf7180000298389:643165-643344 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTTTTTC-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AC---------AGAGA--AAA-----CCCCTTTTCCCCTGGAA----------A-AACCA----A-------T-TGAA---AGAT-CGAAAT
droTak1 scf7180000413998:42792-42960 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAAAAATAACCCTTTTGCC--------------------------------------GAAA---AAG-AAAAAA
droEug1 scf7180000409110:1404448-1404604 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACACACAG---------AAAGA--AAA---------------------------------------------------TATGAAGAAGAAGA----A-
dm3 chrX:12956074-12956213 + dme-mir-971 Known_mirbase CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----------------------------------------------------------------------
droSim2 x:12305303-12305442 + dsi_358 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----------------------------------------------------------------------
droSec2 scaffold_21:701202-701341 + dse_66 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----------------------------------------------------------------------
droYak3 X:7229754-7229916 + dya_52 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----ACCCCTT--------------------------T----AA---------GAA---AAAA-CACAAA
droEre2 scaffold_4690:13914692-13914875 - der_60 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----CCCCT-T-CCTTTGG--TACATAACAAAAAAATA----AATAAA------------TAA-AA-AAA
dp5 XL_group3a:1391613-1391761 - dps-mir-971 Known_mirbase CGCCGCGT-G--TCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCATCGCTCGCTGTAAATTGTAATGGCCAAAGCTTTTTTGTTG--GTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTGG-AGCGT--TTCCAC--AAGCAT-----C----------------------GAC-----------------------------------------------GA----A-
droPer2 scaffold_52:413294-413442 + dpe_90 confident CGCCGCGT-G--TCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCATCGCTCGCTGTAAATTGTAATGGCCAAAGCTTTTTTGTTG--GTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTGG-AGCGT--TTCCAC--AAGCAT-----C----------------------GAC-----------------------------------------------GA----A-
droWil2 scf2_1100000004909:6691450-6691611 - dwi_36 confident CGCCGCGTTATA-------------------CA--------TTAAACGGCCCAATACGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTTTGCCTCACAGCTTGGTGTTACTTCTTACAGTGAGTGTGTG--CGT--GGCATTGAGTTCAGCG-AACAAGCCAAACCA------------------------------AT----AAAAACGAAAGTGA-------------ATAAAA
droVir3 scaffold_12928:4279729-4279851 - dvi-mir-971 Known_mirbase CGCC--------------------------------------------------------CGCTGTAAAATGTAATCATCAGAGCGTCCT-C-TC----AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCC--AAGGTC-----CGACCGTAAATCA--TACAT------------------------------ATATATA----TATATATAT-------------AAGTAT
droMoj3 scaffold_6328:350122-350240 + dmo_78 confident CGAC--------------------------------------------------------CGCTGTAAATTGTAATCATCAAAGCGTCTG-C-TA----AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGCGCTCG--AAAC-T--AC--AGT---GAAACT--AGCA--------------------T----------A-AAGTG----AAC---------AA---GGAA-AGGAAA
droGri2 scaffold_14853:994424-994519 - dgr_60 candidate-rescued CGCC--------------------------------------------------------CGCTGTAATATGTAATCATCAAAGCGTGTATT-TT----ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCC-------ACACGTCCAGCG---GAGGA--GA------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCATCGTTCACTGTAAATTGTAACCATCAAAGCGTTTTTTATC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCTG--GAGCACATATT-------AAAAAA--A------------------------------------AAATA----AA--------TAAA----AAATAAAAATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................221223.00223187812104101
.............................................................ACTGTAAATTGTAACCATCAAAGC............................................................................................................................................................24129.002911501012
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................21126.00261311119
.............................................................ACTGTAAATTGTAACCATCAAAG.............................................................................................................................................................2316.006010005
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................2115.005400001
.............................................................ACTGTAAATTGTAACCATCA................................................................................................................................................................2014.004100003
.........................................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................................................................................2313.003120000
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................2313.003030000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAAA................................................................................................................2413.003020001
.............................................................ACTGTAAATTGTAACCATCAAA..............................................................................................................................................................2213.003000003
........................................................................................................CTTGGTGTTACTTCTTACAGTG...................................................................................................................2213.003001101
.........................................................................................................TTGGTGTTACTTCTTACAGTGC..................................................................................................................2212.002011000
.....................................................................................GTTTTTTATC--AGAGCCGC........................................................................................................................................1812.002020000
.........................................................................................................TTGGTGTTACTTCTTACAGT....................................................................................................................2012.002000101
........................................................................................................CTTGGTGTTACTTCTTACAGTGT..................................................................................................................2311.001000001
.............................................................ACTGTAAATTGTAACCATCAA...............................................................................................................................................................2111.001000001
.............................................................ACTGTAAATTGTAACCATCAAAGT............................................................................................................................................................2411.001000001
.........................................................................................................TTGGTGTTACTTCTTACAGTA...................................................................................................................2111.001001000
.........................................................................................................TTGGTGTTACTTCTTACAGTGT..................................................................................................................2211.001000001
.........................................................................................................TTGGTGTTACTTCTTACAG.....................................................................................................................1911.001100000
.............................................................ACTGTAAATTGTAACCATCAAAGCT...........................................................................................................................................................2511.001000001
droBip1
CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCATCGTTCACTGTAAATTGTAACCATCAAAGCGTTTTTTATC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCTG--GAGCACACATTTAACTGAAAAAGACTAAAAC------------------------------CT----AAAAAA-AAAAAGC-------------AAGAATSizeHit CountTotal NormTotal
No Reads
droKik1
CGCCGCGTT--------------CAGAGCGAAA--------TTCCTTGGCTGGCAGCGCACACTGTAAATTGTAATCATCAAAGCGTTTTTC-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGCGCCAGTACACGTACACACGG---------CAAGA--AAG-----AACCT-------------------------------------------TAAA----AAGT----A-SizeHit CountTotal NormTotal
No Reads
droFic1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AA---------AGAGA--AAA-----CCCCA-----------------------------------------TATGA--------A----A-SizeHit CountTotal NormTotal
No Reads
droEle1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTTTC-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGCCC--GTACAC--AG---------AAAGA--AATA--------------------A----------A-AACTC----A-------T-TG------------AAATSizeHit CountTotal NormTotal
No Reads
droRho1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGTTCGCTGTAAATTGTAATCATCAAAGCGTTTTTT-TC--AGAACCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----CT----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTTTTTC-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AC---------AGAGA--AAA-----CCCCTTTTCCCCTGGAA----------A-AACCA----A-------T-TGAA---AGAT-CGAAATSizeHit CountTotal NormTotal
No Reads
droTak1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAAAAATAACCCTTTTGCC--------------------------------------GAAA---AAG-AAAAAASizeHit CountTotal NormTotal
No Reads
droEug1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACACACAG---------AAAGA--AAA---------------------------------------------------TATGAAGAAGAAGA----A-SizeHit CountTotal NormTotal
No Reads
dm3
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................2214185.004185000018000018591010108000028000015117103000000000000000010100000111140000000000000000000012591111028107276724181817751021516358410644051520852239299504902744169148243590000000000000000000000000000000000009313201562011913261321168625930000004070000000000000000000000000001000016032402610010000221703140000280300011650030000071010000000001003001111363714011100100600330100001200004000284319100075120
.............................................................GCTGTAAATTGTAATCATCA................................................................................................................................................................201359.003590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000050000011031810000000000000000000000000000000000000152801600317020131031500000180000000000000000000000000000000000000000000000000003000023020000000000000000000000000000000000252244380000000000001000000000000000000100010001000
.............................................................GCTGTAAATTGTAATCATCAAAGC............................................................................................................................................................241280.0028000001000000000000000000000000018210100000000000000000000000000000000000000000000000000000000010060010001600000100101000130101220518300000000000000000000000000000000000012210130042601801823710000009000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100022220300000000000000000000000000001100000000000
.............................................................GCTGTAAATTGTAATCATCAAAG.............................................................................................................................................................231229.002290000000000000000000000000000118140000000000000000000000000000000000000000000000000000000000010000000001000000000000001000022704293000000000000000000010000000000000000111204006151813023860000014000000000000000000000000000000000000000000000000000200003101000001000000000000000000000000000016150201000000000000000000000000000000000000000
.............................................................GCTGTAAATTGTAATCATCAA...............................................................................................................................................................211174.0017400000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000250000000000000020000000021730000000000000000000000000000000000001110013016806013020000000150000000000000000000000000000000000000000000000000000000010010000030000000000000000000000000000184100010000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................211163.001630000000000000000001000050000000000000100000000000000000013100000000000000000000010000006000201830220130200020001020300200000102022000000000000000000000000000000000000130000230105054000009000000000000000000000000000000000000000000000003100000000000000100001000009000000000000000000012010300000000000000000002000000000700100004520
.............................................................GCTGTAAATTGTAATCATCAAA..............................................................................................................................................................22178.00780000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020210000000000000000000000000000000000009907001515170140000002000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000013310000000000000000000000000000000000000000000
.............................................................GCTGTAAATTGTAATCATC.................................................................................................................................................................19173.007300000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000131100000000000000000000000000000000000022000000113803100000000000000000000000000000000000000000000000000000000030000010000000000000000000000000000000000009310110000000000000000000000000000000200000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGT..................................................................................................................22146.0046000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000090010001000000000000000000100000001052000000000000000000000000000000000000010100020000000000001000000000000000000000000000000000000000000000001000100001000000000001000001000000000000010100000010100000000100000000001000000000400000001110
.........................................................................................................TTGGTGTTACTTCTTACAGTGC..................................................................................................................22134.0034000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000030000000000000000000003800000104183000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................................................................................23128.0028000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010130010008000000001000000000000000000000000000000000000000000000000000000010000210101000000002000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000010000000000000000000000000000000200000000000
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................23126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001100000000000000000001000500000000000000000000000000000000000000000010100010201020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100300000000001000000000000000000000000000100
.............................................................GCTGTAAATTGTAATCAT..................................................................................................................................................................18116.0016000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112000000000000000000000000000000000000020100000102100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAT.................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000200
.............................................................................................................TGTTACTTCTTACAGTGA..................................................................................................................1819.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000010100000001000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................2118.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000001011000000000000000000000000000000000000110000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGG..................................................................................................................2218.008000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000010000000000000000000010000100000000000000000000000000000000000000000000000100000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAG.................................................................................................................2315.005000000000000000000000000000000000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GCTGTAAATTGTAATCATCAAAGA............................................................................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010110020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACA......................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CTTGGTGTTACTTCTTACAGTGT..................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000000000000000
.............................................................GCTGTAAATTGTAATCATCAAAGG............................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGT....................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010
.............................................................GCTGTAAATTGTAATCATCAAAGCG...........................................................................................................................................................2514.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000
droSim2
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................221285.0028552062700001813013300000
.............................................................GCTGTAAATTGTAATCATCAAAGC............................................................................................................................................................24196.00966113300000010000000
.............................................................GCTGTAAATTGTAATCATCAAAG.............................................................................................................................................................23190.00907611300000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGG..................................................................................................................22126.0026901600000000100000
.........................................TTCCGTGGCTGGCATCGCTC....................................................................................................................................................................................20116.0016160000000000000000
.............................................................GCTGTAAATTGTAATCATC.................................................................................................................................................................19116.0016160000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................2115.00500000000000500000
................................A--------TTCCGTGGCTGGCATCGCTC....................................................................................................................................................................................2114.00430100000000000000
.............................................................................................................TGTTACTTCTTACAGTGA..................................................................................................................1812.00200000000110000000
.........................................................................................................TTGGTGTTACTTCTTACAG.....................................................................................................................1912.00210100000000000000
.............................................................GCTGTAAATTGTAATCATCAAAGA............................................................................................................................................................2411.00100000000010000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................................................................................2311.00100100000000000000
.............................................................GCTGTAAATTGTAATCATCAAA..............................................................................................................................................................2211.00100000000010000000
...............................AA--------TTCCGTGGCTGGCATCGCTC....................................................................................................................................................................................2211.00110000000000000000
droSec2
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................221177.001776012645
.............................................................GCTGTAAATTGTAATCATCA................................................................................................................................................................20128.002811125
.............................................................GCTGTAAATTGTAATCATCAA...............................................................................................................................................................21112.001200012
.............................................................GCTGTAAATTGTAATCATCAAA..............................................................................................................................................................2217.0070007
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................2116.0060051
.............................................................GCTGTAAATTGTAATCATC.................................................................................................................................................................1915.0050005
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................2315.0050050
.............................................................GCTGTAAATTGTAATCATCAAAGC............................................................................................................................................................2415.0051013
.............................................................GCTGTAAATTGTAATCATCAAAG.............................................................................................................................................................2313.0031002
.........................................................................................................TTGGTGTTACTTCTTACAGTGT..................................................................................................................2212.0020020
.........................................TTCCGTGGCTGGCATCGCTC....................................................................................................................................................................................2011.0010010
............................................................CGCTGTAAATTGTAATCATCAA...............................................................................................................................................................2211.0010001
.............................................................GCTGTAAATTGTAATCATCAAAGCG...........................................................................................................................................................2511.0010010
........................................................................................................CTTGGTGTTACTTCTTACAGTG...................................................................................................................2211.0010010
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................2111.0011000
.........................................................................................................TTGGTGTTACTTCTTACAGT....................................................................................................................2011.0010001
.........................................................................................................TTGGTGTTACTTCTTACAGTGG..................................................................................................................2211.0010010
...............................................................................CAAAGCGTTTT-C-TC--AGGC............................................................................................................................................1880.1311000
droYak3
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCTCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----ACCCCTT--------------------------T----AA---------GAA---AAAA-CACAAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................221227.002271111138630220000
.............................................................GCTGTAAATTGTAATCATCAAAGC............................................................................................................................................................24169.00692813901000000
.............................................................GCTGTAAATTGTAATCATCAAAG.............................................................................................................................................................23136.0036292410000000
.............................................................GCTGTAAATTGTAATCATCA................................................................................................................................................................20110.001001005400000
.........................................TTCCGTGGCTGGCATCGCTC....................................................................................................................................................................................20110.001090100000000
................................A--------TTCCGTGGCTGGCATCGCTC....................................................................................................................................................................................2116.00650100000000
.........................................................................................................TTGGTGTTACTTCTTACAG.....................................................................................................................1916.00600600000000
.............................................................GCTGTAAATTGTAATCATC.................................................................................................................................................................1914.00431000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................2114.00400400000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................................................................................2314.00411110000000
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................2114.00404000000000
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................2313.00300210000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGG..................................................................................................................2212.00210010000000
.............................................................GCTGTAAATTGTAATCATCAAAGCG...........................................................................................................................................................2512.00210010000000
.............................................................GCTGTAAATTGTAATCATCAA...............................................................................................................................................................2111.00100000100000
..........................................TCCGTGGCTGGCATCGCTC....................................................................................................................................................................................1911.00110000000000
..........................................................................................................TGGTGTTACTTCTTACAGTG...................................................................................................................2011.00100100000000
droEre2
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTTTT-C-TC--AGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCC--GTACAC--AG---------AAAGA--AAA-----CCCCT-T-CCTTTGG--TACATAACAAAAAAATA----AATAAA------------TAA-AA-AAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................221231.0023139451661790
.............................................................GCTGTAAATTGTAATCATCA................................................................................................................................................................20145.004500601380
.............................................................GCTGTAAATTGTAATCATCAAAGC............................................................................................................................................................24129.0029112011140
.............................................................GCTGTAAATTGTAATCATCAAAG.............................................................................................................................................................23126.002601210220
.............................................................GCTGTAAATTGTAATCATCAA...............................................................................................................................................................21122.002200000220
.............................................................GCTGTAAATTGTAATCATCAAA..............................................................................................................................................................22122.002210000210
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................21115.00152405040
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................2115.0055000000
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................2315.0050400010
.........................................................................................................TTGGTGTTACTTCTTACAGTGT..................................................................................................................2212.0020011000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................................................................................2312.0020000020
.........................................................................................................TTGGTGTTACTTCTTACAGT....................................................................................................................2012.0020000020
..............................................................CTGTAAATTGTAATCATCAAAG.............................................................................................................................................................2212.0022000000
.............................................................GCTGTAAATTGTAATCATCAAAGCG...........................................................................................................................................................2512.0020000020
.........................................................................................................TTGGTGTTACTTCTTACAGTGC..................................................................................................................2212.0020011000
.............................................................GCTGTAAATTGTAATCAT..................................................................................................................................................................1812.0020000020
.............................................................GCTGTAAATTGTAATCATCAAAA.............................................................................................................................................................2311.0010000010
.........................................................................................................TTGGTGTTACTTCTTACAGTGTA.................................................................................................................2311.0010001000
............................................................CGCTGTAAATTGTAATCATCA................................................................................................................................................................2111.0010000010
.............................................................GCTGTAAATTGTAATCATC.................................................................................................................................................................1911.0010000010
.............................................................GCTGTAAATTGTAATCATCG................................................................................................................................................................2011.0010000010
............................................................CGCTGTAAATTGTAATCATCAAAG.............................................................................................................................................................2411.0010000010
.........................................TTCCGTGGCTGGCATCGCCC....................................................................................................................................................................................2011.0011000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAC.................................................................................................................2311.0010100000
...............................AA--------TTCCGTGGCTGGCATCGCCC....................................................................................................................................................................................2211.0010000010
........................................................................................................CTTGGTGTTACTTCTTACAGTG...................................................................................................................2211.0011000000
.............................................................................................................TGTTACTTCTTACAGTGA..................................................................................................................1811.0010001000
.....................................................................................................................................CAGTCC--GTACAC--AG---------AAAGA--AAA-----..................................................................2211.0010000010
dp5
CGCCGCGT-G--TCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCATCGCTCGCTGTAAATTGTAATGGCCAAAGCTTTTTTGTTG--GTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTGG-AGCGT--TTCCAC--AAGCAT-----C----------------------GAC-----------------------------------------------GA----A-SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................221538.00538020311864109355004
.............................................................GCTGTAAATTGTAATGGCCAAAGC............................................................................................................................................................24170.00700818301040000
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................23142.004204255620000
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................21124.002401041261000
.............................................................GCTGTAAATTGTAATGGCCAAAGCT...........................................................................................................................................................25114.00140247100000
.............................................................GCTGTAAATTGTAATGGCCAAAG.............................................................................................................................................................23112.00120700050000
.........................................................................................................TTGGTGTTACTTCTTACAGTGT..................................................................................................................22111.00110000380000
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................21110.001001000000000
.............................................................GCTGTAAATTGTAATGGCCA................................................................................................................................................................2018.0080400040000
.............................................................GCTGTAAATTGTAATGGCCAAA..............................................................................................................................................................2217.0070001050001
.........................................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................................................................................2316.0060301000002
.........................................................................................................TTGGTGTTACTTCTTACAG.....................................................................................................................1914.0040021010000
.............................................................GCTGTAAATTGTAATGGCCAA...............................................................................................................................................................2114.0040101020000
........................................................................................................CTTGGTGTTACTTCTTACAGTG...................................................................................................................2213.0030110100000
.............................................................GCTGTAAATTGTAATGGCCAAAGCC...........................................................................................................................................................2512.0020002000000
.............................................................................................................TGTTACTTCTTACAGTGA..................................................................................................................1812.0020100100000
..........................................TCCCTGGACCCCATCGCTC....................................................................................................................................................................................1912.0020002000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAAA................................................................................................................2411.0010100000000
........................................................................................................CTTGGTGTTACTTCTTACAGC....................................................................................................................2111.0010001000000
........................................................................................................CTTGGTGTTACTTCTTACAG.....................................................................................................................2011.0010010000000
..............................................................CTGTAAATTGTAATGGCCAAAGCT...........................................................................................................................................................2411.0010000010000
.........................................................................................................TTGGTGTTACTTCTTACAGTGC..................................................................................................................2211.0010000010000
..............................................................CTGTAAATTGTAATGGCCAAAGA............................................................................................................................................................2311.0010100000000
..........................................................................................................TGGTGTTACTTCTTACAGTG...................................................................................................................2011.0010100000000
........................................TTTCCCTGGACCCCATCGCTC....................................................................................................................................................................................2111.0010001000000
...........................................................................................................GGTGTTACTTCTTACAGTGA..................................................................................................................2011.0010100000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGG..................................................................................................................2211.0010010000000
........................................................................................................CTTGGTGTTACTTCTTACAGT....................................................................................................................2111.0010000100000
.........................................................................................................TTGGTGTTACTTCTTACAGT....................................................................................................................2011.0010000100000
...............................................................TGTAAATTGTAATGGCCAAAGCT...........................................................................................................................................................2311.0010001000000
.....................................................................................TTTTTTGTTG--GTAGCAGC........................................................................................................................................1821.0020020000000
.........................................................................................................TTGGTGTTACTTCTTACAC.....................................................................................................................1911.0010010000000
droPer2
CGCCGCGT-G--TCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCATCGCTCGCTGTAAATTGTAATGGCCAAAGCTTTTTTGTTG--GTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTGG-AGCGT--TTCCAC--AAGCAT-----C----------------------GAC-----------------------------------------------GA----A-SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................221192.0019224234653424
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................21119.0019024931
.............................................................GCTGTAAATTGTAATGGCCAAAG.............................................................................................................................................................2319.009000540
.............................................................GCTGTAAATTGTAATGGCCAAAGCT...........................................................................................................................................................2519.009001260
.............................................................GCTGTAAATTGTAATGGCCA................................................................................................................................................................2018.008020240
.............................................................GCTGTAAATTGTAATGGCCAAA..............................................................................................................................................................2217.007000340
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................2316.006011310
.........................................................................................................TTGGTGTTACTTCTTACAGTGG..................................................................................................................2215.005500000
.........................................................................................................TTGGTGTTACTTCTTACAGTGT..................................................................................................................2215.005000230
.............................................................GCTGTAAATTGTAATGGCCAA...............................................................................................................................................................2114.004010030
.........................................TTCCCTGGACCCCATCGCTC....................................................................................................................................................................................2014.004000220
........................................................................................................CTTGGTGTTACTTCTTACAGTG...................................................................................................................2213.003000201
.....................................................................................TTTTTTGTTG--GTAGCAGC........................................................................................................................................1823.006300030
...............................................................TGTAAATTGTAATGGCCAAAGCT...........................................................................................................................................................2313.003000120
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................2113.003020100
........................................................................................................CTTGGTGTTACTTCTTACAGT....................................................................................................................2113.003100110
.............................................................GCTGTAAATTGTAATGGCCAAAT.............................................................................................................................................................2312.002000020
.............................................................GCTGTAAATTGTAATGGCCAAAGC............................................................................................................................................................2412.002020000
..........................................TCCCTGGACCCCATCGCTC....................................................................................................................................................................................1911.001000010
.........................................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................................................................................2311.001000010
.............................................................GCTGTAAATTGTAATGGCCAAT..............................................................................................................................................................2211.001000001
.........................................................................................................TTGGTGTTACTTCTTACAGT....................................................................................................................2011.001000010
.........................................................................................................TTGGTGTTACTTCTTACA......................................................................................................................1811.001010000
........................................................................................................CTTGGTGTTACTTCTTACAGTGT..................................................................................................................2311.001001000
.............................................................GCTGTAAATTGTAATGGCC.................................................................................................................................................................1911.001000010
droWil2
CGCCGCGTTATA-------------------CA--------TTAAACGGCCCAATACGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTTTGCCTCACAGCTTGGTGTTACTTCTTACAGTGAGTGTGTG--CGT--GGCATTGAGTTCAGCG-AACAAGCCAAACCA------------------------------AT----AAAAACGAAAGTGA-------------ATAAAASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................2214923.00492343116785403777
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................211449.00449139028399
.........................................................................................................TTGGTGTTACTTCTTACAGTGT..................................................................................................................221118.001180107110
.........................................................................................................TTGGTGTTACTTCTTACAGTGG..................................................................................................................22182.0082780022
.........................................................................................................TTGGTGTTACTTCTTACAGT....................................................................................................................20174.0074331166
.............................................................GCTGTAAATTGTAGCAATCAAAGC............................................................................................................................................................24172.00725200128
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................21122.0022015007
.........................................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................................................................................23120.0020010118
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................23110.001001027
.........................................................................................................TTGGTGTTACTTCTTACAG.....................................................................................................................1917.00731003
.........................................................................................................TTGGTGTTACTTCTTACAGTGC..................................................................................................................2215.00500104
.........................................................................................................TTGGTGTTACTTCTTACAGTGAT.................................................................................................................2314.00400013
..........................................................................................................TGGTGTTACTTCTTACAGTG...................................................................................................................2013.00311001
...........................................................................................................GGTGTTACTTCTTACAGTGA..................................................................................................................2012.00201001
.........................................................................................................TTGGTGTTACTTCTTACAGTA...................................................................................................................2112.00200002
..........................................TAAACGGCCCAATACGCTC....................................................................................................................................................................................1912.00220000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAAA................................................................................................................2412.00201100
........................................................................................................CTTGGTGTTACTTCTTACAGTGT..................................................................................................................2311.00100001
...............................................................................................................................GTGTGTG--CGT--GGCATTGAGTTC........................................................................................2211.00100001
.........................................................................................................TTGGTGTTACTTCTTACAGTT...................................................................................................................2111.00100001
.............................................................................................................TGTTACTTCTTACAGTGA..................................................................................................................1811.00100001
.........................................................................................................TTGGTGTTACTTCTTACAGTGAGT................................................................................................................2411.00100001
.........................................................................................................TTGGTGTTACTTCTTACAC.....................................................................................................................1911.00110000
..............................................................................................................GTTACTTCTTACAGTGAA.................................................................................................................1811.00101000
...............................................................................................................................GTGTGTG--CGT--GGCATTGAGTA.........................................................................................2111.00100001
..........................................................................................................TGGTGTTACTTCTTACAGTGT..................................................................................................................2111.00100001
.........................................................................................................TTGGTGTTACTTCTTACA......................................................................................................................1811.00100001
..........................................................................................................TGGTGTTACTTCTTACAGT....................................................................................................................1911.00100001
..........................................................................................................TGGTGTTACTTCTTACAGTGAAA................................................................................................................2311.00101000
.............................................................GCTGTAAATTGTAGCAATCAAAG.............................................................................................................................................................2311.00101000
........................................................................................................CTTGGTGTTACTTCTTACAGTG...................................................................................................................2211.00100001
.........................................................................................................TTGGTGTTACTTCTTACAGTGAG.................................................................................................................2311.00100001
.............................................................GCTGTAAATTGTAGCAATC.................................................................................................................................................................1911.00110000
..............................................................................................................GTTACTTCTTACAGTGAT.................................................................................................................18100.10100001
droVir3
CGCC--------------------------------------------------------CGCTGTAAAATGTAATCATCAGAGCGTCCT-C-TC----AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCC--AAGGTC-----CGACCGTAAATCA--TACAT------------------------------ATATATA----TATATATAT-------------AAGTATSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................221962.0096205416463200001000078372683302902110000100822221270000053000000000010000000487441300001104020100000
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................211175.0017513153000000000052730211700000711140170000071000000000000000001034600000000000000000
.............................................................GCTGTAAAATGTAATCATCAGAGC............................................................................................................................................................24144.00441509000000000062211102300000000000000002000000000000000000016100000001000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGT..................................................................................................................22135.003500000000010000000100003000000000050000012000000000000000000033700000000000000000
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................21118.001800160000000000000000000000000000000000001000000000000000000010000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGG..................................................................................................................22113.001301200000000000000000000000000000000000000000000000000000000100000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................................................................................23112.00120030000000000011010000000000100101000003000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAT.................................................................................................................2319.0090000000000000000010001100000000200000003000000000000000000010000000000000000000
.............................................................GCTGTAAAATGTAATCATCAGAG.............................................................................................................................................................2317.0070100000000000040000200000000000000000000000000000000000000000000000000000000000
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................2317.0070020000000000010010000000000000100000000000000000000000000011000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAG.....................................................................................................................1914.0040003000000000000000000000000000000000001000000000000000000000000000000000000000
........................................................................................................CTTGGTGTTACTTCTTACAGTG...................................................................................................................2213.0030000000000000010010000000000100000000000000000000000000000000000000000000000000
.............................................................GCTGTAAAATGTAATCATCAGA..............................................................................................................................................................2213.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
...C--------------------------------------------------------CGCTGTAAAATGTAATCATCAGAGC............................................................................................................................................................2613.0030100000000000000000000000000000000000000000000000000000000200000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGT....................................................................................................................2013.0030000000000000001010000000000000000000000000000000000000000001000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTT...................................................................................................................2112.0020000000000000000000011000000000000000000000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGC..................................................................................................................2212.0020000000000000000010000000000000000000000000000000000000000001000000000000000000
..........................................................................................................TGGTGTTACTTCTTACAGTGT..................................................................................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTGAAA................................................................................................................2411.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................TGTTACTTCTTACAGTGAAA................................................................................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................GTTACTTCTTACAGTGAA.................................................................................................................1811.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAGTC...................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TGTTACTTCTTACAGTGA..................................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TGGTGTTACTTCTTACAGTG...................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GGTGTTACTTCTTACAGTGA..................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TGGTGTTACTTCTTACAGTGAA.................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TGTTACTTCTTACAGTGAA.................................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................TTGGTGTTACTTCTTACAC.....................................................................................................................1911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
CGAC--------------------------------------------------------CGCTGTAAATTGTAATCATCAAAGCGTCTG-C-TA----AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGCGCTCG--AAAC-T--AC--AGT---GAAACT--AGCA--------------------T----------A-AAGTG----AAC---------AA---GGAA-AGGAAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................221543.0054319051435618914
.............................................................GCTGTAAATTGTAATCATCAAAGC............................................................................................................................................................24140.00402111350
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................21123.00232200010
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................23120.00206001121
.........................................................................................................TTGGTGTTACTTCTTACAGTG...................................................................................................................21118.0018722340
.............................................................GCTGTAAATTGTAATCATCAAAG.............................................................................................................................................................2318.008112040
.........................................................................................................TTGGTGTTACTTCTTACAGTGT..................................................................................................................2218.008004310
.............................................................GCTGTAAATTGTAATCATCA................................................................................................................................................................2017.007103300
.........................................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................................................................................2313.003200001
.........................................................................................................TTGGTGTTACTTCTTACAGTGAT.................................................................................................................2313.003210000
.........................................................................................................TTGGTGTTACTTCTTACAGT....................................................................................................................2013.003002010
.........................................................................................................TTGGTGTTACTTCTTACAG.....................................................................................................................1913.003000030
...........................................................................................................GGTGTTACTTCTTACAGTGA..................................................................................................................2012.002200000
........................................................................................................CTTGGTGTTACTTCTTACAGTG...................................................................................................................2212.002010100
.............................................................GCTGTAAATTGTAATCATC.................................................................................................................................................................1912.002002000
........................................................................................................CTTGGTGTTACTTCTTACAGT....................................................................................................................2112.002000020
..........................................................................................................TGGTGTTACTTCTTACAGTG...................................................................................................................2011.001100000
...............................................................................................................................GCGCGGCGCTCG--AAAC-T--AC--AG......................................................................................2111.001000001
.........................................................................................................TTGGTGTTACTTCTTACAGTGAC.................................................................................................................2311.001000010
............................................................CGCTGTAAATTGTAATCATC.................................................................................................................................................................2011.001000100
............................................................CGCTGTAAATTGTAATCATCA................................................................................................................................................................2111.001000100
.............................................................GCTGTAAATTGTAATCATCAAAGA............................................................................................................................................................2411.001000010
.............................................................................................................TGTTACTTCTTACAGTGA..................................................................................................................1811.001010000
.........................................................................................................TTGGTGTTACTTCTTACAGTGATT................................................................................................................2411.001000010
.........................................................................................................TTGGTGTTACTTCTTACAGTGC..................................................................................................................2211.001001000
.............................................................GCTGTAAATTGTAATCATCAA...............................................................................................................................................................2111.001000100
droGri2
CGCC--------------------------------------------------------CGCTGTAATATGTAATCATCAAAGCGTGTATT-TT----ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCC-------ACACGTCCAGCG---GAGGA--GA------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................................TTGGTGTTACTTCTTACAGTGA..................................................................................................................22111.0011110
...........................................................................................................GGTGTTACTTCTTACAGTGA..................................................................................................................2011.00110
.........................................................................................................TTGGTGTTACTTCTTACAGTGT..................................................................................................................2211.00101
........................................................................................................CTTGGTGTTACTTCTTACAGTGA..................................................................................................................2311.00110
..........................................................................................................TGGTGTTACTTCTTACAGTGA..................................................................................................................2111.00110

Generated: 10/20/2015 at 07:35 PM