ID:

dan_500

 Coordinate:

scaffold_12916:2581421-2581571 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.9 -21.9 -21.8

Flybase annnotation

CDS [Dana\GF14829-cds]; exon [dana_GLEANR_15594:2]; intron [Dana\GF14829-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTTGTTTTTGTTGTTGTTTTTGTTTTTGTTTACCTCACGTTTATCTCAATAACAAAATACTTGGCAGCTATAGTTGTTGTTTCTCATTAAGGTCAATTAATAAGGGGAAAAGTAAAAATAATAGGGCAATAGGTAATCCTCTTGCAAGAGAAGATCTTTAATATTAATTAAACTTCAAAATTCATTCAACTTCATTGCAGTGCTGGATTCTTACTTTACGAGGCGCCTCAGGTCCGCCGCTTCCTTGCTC
**************************************************..............((((....(((((...(((((((((((......)))))...))))))...............((((.(((....))).))))....((((...((((((....))))))))))..........)))))...))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V055
head
 V106
head
 M044
female body
 V039
embryo
.......................................................................................................................................................................................................................................GGCCCGCCGCTTCCTTGCTC 20 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................AATAATAGGGCAATAGGTAATC................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0
.......................................................................................................................................................................................................................................GGTCCGCCGCTTCCTTGCTC 20 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................TTGCAGTGCTGGATGATTATT................................... 21 3 2 0.50 1 0 1 0 0 0
.................................................................................................................................................................................................................................GCTTCAGGTGCGCCGCTTC....... 19 2 2 0.50 1 0 1 0 0 0
..................................................................................................................................................................................................................CTTACTTTACAGGGCGCCGC..................... 20 3 6 0.17 1 0 0 0 1 0
...................................................................................................................AAGATAATAGGGTAATAG...................................................................................................................... 18 2 15 0.07 1 0 0 0 1 0
.......................................................................................................................................................................................................................TTAACGAGGTGCCTAAGGT................. 19 3 16 0.06 1 0 1 0 0 0
.............................................................................................................................................................................CTTCAAATCTCATTCAAC............................................................ 18 2 18 0.06 1 0 0 0 0 1
.............................................................................................................................................................................................................................AAGCGCGTCGGGTCCGCCG........... 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TAAACAAAAACAACAACAAAAACAAAAACAAATGGAGTGCAAATAGAGTTATTGTTTTATGAACCGTCGATATCAACAACAAAGAGTAATTCCAGTTAATTATTCCCCTTTTCATTTTTATTATCCCGTTATCCATTAGGAGAACGTTCTCTTCTAGAAATTATAATTAATTTGAAGTTTTAAGTAAGTTGAAGTAACGTCACGACCTAAGAATGAAATGCTCCGCGGAGTCCAGGCGGCGAAGGAACGAG
**************************************************..............((((....(((((...(((((((((((......)))))...))))))...............((((.(((....))).))))....((((...((((((....))))))))))..........)))))...))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V055
head
 V106
head
...........AGCAACAAAAACAAAAACAAATGG........................................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0
........................................................................................................................................TATCAGAACGTTCGCTTCTAGA............................................................................................. 22 3 1 1.00 1 0 1 0 0
......................................................................................................................................................................TTAGTATGAAGTTTTAAGTGAGT.............................................................. 23 3 1 1.00 1 0 0 1 0
..........................................................................................................................................AGGGAACGTTCTCTTCTAG.............................................................................................. 19 2 2 0.50 1 0 0 0 1
.......AAACAACAAGAAAAACAAAAAC.............................................................................................................................................................................................................................. 22 1 3 0.33 1 1 0 0 0
.AAACAAACACACCAACAAAAACAAAA................................................................................................................................................................................................................................ 26 2 3 0.33 1 1 0 0 0
...........AGCAACAAAAACAAAAACAAATAG........................................................................................................................................................................................................................ 24 2 4 0.25 1 1 0 0 0
..............................................................................................................................................................................................TAAGTACCATCACGACCTAAG........................................ 21 3 5 0.20 1 0 1 0 0
...............ACAAACCCAAAAACAAATGGA....................................................................................................................................................................................................................... 21 2 6 0.17 1 1 0 0 0
....CAAAAACAACCACAAGAACCAAAACA............................................................................................................................................................................................................................. 26 3 6 0.17 1 1 0 0 0
..............................TATGGAGGGCAAATCGAGT.......................................................................................................................................................................................................... 19 3 7 0.14 1 0 0 1 0
.....AAAAACACCAGCAAAAACAAAAA............................................................................................................................................................................................................................... 23 2 7 0.14 1 1 0 0 0
...ACAAACACAACACCACAAACAAAAA............................................................................................................................................................................................................................... 25 3 9 0.11 1 1 0 0 0
............ACCACAAGAACAAAAACAAAT.......................................................................................................................................................................................................................... 21 2 11 0.09 1 1 0 0 0
...........................ACAAATAGAGAGCAAAGAGAG........................................................................................................................................................................................................... 21 3 11 0.09 1 0 0 1 0
...ACAAAAACAACAACAAAAAC.................................................................................................................................................................................................................................... 20 0 12 0.08 1 1 0 0 0
.......AAACAACAACACAAACAAAAACT............................................................................................................................................................................................................................. 23 2 13 0.08 1 1 0 0 0
..CACAAAAACAACCACAAAAACAGAA................................................................................................................................................................................................................................ 25 3 13 0.08 1 1 0 0 0
........................................................TTATGAGTCGTCGATTTCAA............................................................................................................................................................................... 20 3 14 0.07 1 0 1 0 0
..................................................................................................................................ATCCATTAGGCGAAGGT........................................................................................................ 17 2 14 0.07 1 0 0 1 0
...ACTCAAACAACAACAAAAACAAA................................................................................................................................................................................................................................. 23 2 15 0.07 1 1 0 0 0
.......................................................................................................................................................................................................................................CCAGACTGCGAAGGAAAGA. 19 3 17 0.06 1 1 0 0 0
................................................................................................................................................CGTTCTCTTCTAGTATTTGT....................................................................................... 20 3 19 0.05 1 0 0 0 1
.AACCAAAAACAACAACAAAAA..................................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0
...ACAAAAACAACAACAAAA...................................................................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0
......AAAACCACACCAAAAACAAAAA............................................................................................................................................................................................................................... 22 2 20 0.05 1 1 0 0 0
.........ACAACAAAAAAAACAAGAACAAA........................................................................................................................................................................................................................... 23 2 20 0.05 1 1 0 0 0
.........ACCACAACAAAAACAAAACCAAA........................................................................................................................................................................................................................... 23 2 20 0.05 1 1 0 0 0
..AAGAAAAACAACAACAAAAA..................................................................................................................................................................................................................................... 20 1 20 0.05 1 1 0 0 0
......AAAACAACAAGAAAAACAAAGA............................................................................................................................................................................................................................... 22 2 20 0.05 1 1 0 0 0
.................................................................................................................................................................................................GTAACATCACGATCTATGA....................................... 19 3 20 0.05 1 0 1 0 0
.........ACAACAACAAAAACAAAAA............................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0
.....AAAAACAACACCAAAAAC.................................................................................................................................................................................................................................... 18 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:2581371-2581621 - dan_500 ATTT-GTTTTTGTTGTTGTTTTTGTTTTTGTTTACCTCA--CGTTTATCTC------------AATAACAAAATACTTGGCAGCTATAGTTG---TTGTTTC--TCA-------TTAAGGTCAAT-TAATAAGGGG--AAAAGTAAAA--------------------ATAATAGGGCAATAGGT------------------AATCCTCT--TGCAAGA----------------------------------------------------------------------------------------------GA-------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCTTTAATATTA-ATTA--------------A---ACTTCAAAATTCATTCAAC-TTCATTGCAGTGCTGGATTCTTACTTTACGAGGCGCCTCAGGTCCGCCGCTTCCTTGCTC
droBip1 scf7180000396430:517331-517596 - AATCGCCATTTGTTTTTGTTGTTGTTTTTGTTTACCTCA--CGTTTATCTC------------AATAACAAAATACTTGGCAGCTTTAGTTG---TTGTTTC--CAC-------T-GAGGTCGAT-TAATAAGGGG--AAAAGTCAAA--------------------ATAATAGGGTAATAGGT------------------AATCCCCGGGAGCAAGA---------A---CGG--------------------------------TTAGCCGAAGCC----------------------------------GA-------A---------GA---------------------------A----------------------TTTTTTG--AAAAAGTTT--------------------------------------------AAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--ATTTTC-C------------------A------------AC-TTCATTGCAGTGCTGGATTCTTGCTTTACGAGGCGCCACAGGTTCGCCGGTTCCTTGCTC
droKik1 scf7180000302684:342833-343133 + ---------------------------TTGTTTATTTCA--CTTTTATCCC------------AAAAAC-AAATTGTTGGCAACGGTAATTG---TTTTGGT--TCA-------AGAAAGATTAT-TAAACAACAA-------------C-----A------------A----------------------------------------------CATCAACAACAACAACAACAA-----------------------CAAGTG---------TTATGTTAATAATA------------------A---------TATCGAGTACCT----AAAAGCTTTGGTAACTCAACAAATATAAAAAA----------------------------------AATAT-------------------------------------------AATATTAAAATAAAGGATACAAGTTTGCTTATATTA--------------------------------------------------------------------------------------------------------------------------------------------TAATCTAATGG-AAAACCTTCCCTTA---AC--T------------TC-CAAATTTCAGGGCTGGTTTCCTGCTGTACGAGTCGCCGCAGGTGCGCAGCATCCTCTCTC
droFic1 scf7180000454059:239269-239522 + AACTAGTCTTCGGGTTCG---TTGTTGTTGTTTATCTTA--CTTTTACCTC------------AATAAC-AAATAGTTGGCAGCAATTTGTG---TTGTTGT--TAT-------TTAAGGTCAAT-TAATTTAAAAA-----------AGA-AG-A------------A----------------------------------------------------------CAA---CAA-----------------------CTTGTTAAATAAAACGGAAGTTAGGATTGATAAG-------------ACTAAGTAGA------TA-------------------------------------------------------------GTCCCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTAATCTTG-ATTT------------------TT--T------------TA-TGTTTTCCAGTGCTGGTTTTTTGCTGTACGAGTCGCCGCAGGTGCGCAGGTTCCTTTCCC
droEle1 scf7180000491338:2670657-2670833 - A----GTCTTTGGTTTCG---TTGTTGTTGTTTATCTCA--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCTTTAGGTG---TTGTTGT--TAT-------TTAAGGTCAAT-TAATCTGAAAA-----------AG-----A------------A----------------------------------------------------------CAA---CAA-----------------------CAAATGAAATAAAACGGAAGTTCCGATTGATAAG-------------A---------ATTTAAAA--------------------------------------------------------------------------GGTTT-------------------------------------------TAAATTTAAATA-------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------CTT
droRho1 scf7180000780030:128712-128953 + T-------------------------TTTGTTTATTGTA--CTTTTACCTA------------CAAAAC-AATTTGTTGGCAGCGGTAATAG---TAATTGTGCTAA-------T-TAGATCATT-AAGTAACAAG----------------------TGATATTAAAATA---TAGAAAAAGCT----AAATTCAAATATGTAAAT------------A---------G---C-------------------------------------------------AATTGAACAG-------------A---------ATGGATAA--------------------------------------A-------------------------------ATGTGAATTAATATAT-------------------TAATT---------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------TT--AAAT------------------TA--T------------TT-TCTATTCCAGTGCTGGTTTTTTGCTGTACGAGTCGCCGCAGGTGCGCAGATTCCTCTCTC
droBia1 scf7180000302422:4985400-4985514 + A----GTCTTCGGCTTCG---TTGTTGTTGTTTATCTCA--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCGATAGGTG---TTGTTGT--T-----------AAGGTCAAT-TAATCAAAAAA---T-------CG-----A------------A----------------------------------------------------------CAA---CAA-----------------------CAGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414323:102269-102435 - AACTAGTCTTCTGTTTCG---TTGTTGTTGTTTATCTCA--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCGATAGGTG---TTGTTGT--TAAGGTGTTGTTAAGGTCAAT-TAAACAGAAA-A--G-------AG-----A------------A----------------------------------------------------------GAA---CAG-----------------------CAAGTGGTATAAAACGGAAGTTAAGATTGATAAG-------------A---------ATTTAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409447:638444-638782 - AACTAGTCTTCGGTTT-T---TTGTTGTTGTTTATCT----CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCAATAGGTG---TTGTTGT--TAT-------TTAAGGTCAAT-TAGTCTTCAGC-----------AGA-AG-A------------A----------------------------------------------------------CAA---CAA-----------------------CATGAGAAATAAAACGGAAGTTAAGACTGATAAG-------------A---------TTGGAAAA--TGATTTAAA--------TCGGAACATTCAAAAAGCAAAAAGGGTTTTGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAGTTGTTTAATTTAATAAACAATCAAAGTAC-TTTAAAATATATTGTACATAAGAAATGATTTTTA-------A---------------------TA--T------------TC-TCCATTTCAGTGCTGGTTTTCTGCTGTACGAATCACCACAGGTGCGCAGATTCCTTTCTC
dm3 chr2L:18693466-18693840 - AACGAGTCTTTGGATTCACTTTTGTTGTTGTTTATCTCA--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCTAAAGGTG---TTGTTGT--TAT-------TTAAGGTCAAAATAATCTAGAAAA--A-------ATAA--A-------------------------------------------------------------------------AA---C--------------------------------ATTCAAACGAAAGCTAAGAGTGATAAG-------------A---------AATCAAGAACTT----AAATCAAATGGG---------------------------------------------------------------------------------------------------------------TTC-----------ACTTTCAAAATTATTGATTCGAAGATTTATTAAAGTTGAAATGTTTTTATGAAAATTTTAAAAACTTATTTGTTGAATAAAAAAACAAGTAAAAGACTATCGTACATCATAACAGAATATTTAAAATATATAGCAT-------------------------------T------------------A------------CA-TTTTTTTCAGTGCTGGTTTCTTGCTGTACGAGTCGCCCCAGGTCCGCCGGTTCCTTTCCC
droSim2 2l:18249042-18249416 - dsi_6946 AACTAGTCTTTGGATTCACTTTTGTTGTTGTTTATCTCG--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCTAAAGGTG---TTGTTGT--TAT-------TTAAGGTCAAAATAATCTAAAAAA--A-------ATAA--A-------------------------------------------------------------------------AA---C--------------------------------AATCAAACGGAAGTTAAGAGTGATAAG-------------A---------AATCAAGAACTT----AAATCAAATGGG---------------------------------------------------------------------------------------------------------------TTA-----------ACTTTCTAAATTATTGATTCGAAGATTTATAAAAGTTGAAATTTTTATATGGAAATATTAAGAACTTATTTGTTGAATAAAAAAACGAGTAGAACAATATTGTAAACCATAACAGAATATTTAAAATATATAGCAT-------------------------------T------------------A------------CT-TTTTTTTCAGTGCTGGTTTCTTGCTGTACGAGTCGCCCCAGGTCCGCCGGTTCCTTTCCC
droSec2 scaffold_7:2314977-2315350 - AACTAGTCTTTGATTTCACTTTTGTTGTTGTTTATCTCG--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCTAAAGGTG---TTGTTGT--TAT-------TTAAGGTCAAAATAATCTAAAAAA--A-------ATAA--A-------------------------------------------------------------------------AA---C--------------------------------AATCAAACGGAAGTTAAGAGTGATAAG-------------A---------AATCAAGAACTT----AAATCAAATGGG---------------------------------------------------------------------------------------------------------------TTC-----------ACTTTCTAAATTATTGATTCGAAGATTTATAAAAGTTGAAATGTTTATATGGAAATATTAA-AACTTATTTGTTATATAAGAAAACGAGTAGAACAATATTGTAAACCATAACAGAATATTTAAAATATATAGTAT-------------------------------T------------------A------------CT-TTTTTTTCAGTGCTGGTTTCTTGCTGTACGAGTCGCCCCAGGTCCGCCGGTTCCTTTCCC
droYak3 2R:5207188-5207309 - A-CTAGTCTTCGGATTCGTATTTGTTGTTGTTTATCTCG--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCAAAAGGTG---TTGTTGT--TAT-------TTAAGGTCAAAATAATCAAGAAAA--A-------A-----G-------------------------------------------------------------------------AA---C--------------------------------AATCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:5582592-5582821 + A----GTCTTCGCATTTG---TTGTTGTTTTTTATCTCG--CGTTTAGCTC------------AATAAC-AAATAGTTGGCAGCAAAAGGTC---TTGTTGT--TAT-------TTAAGGTCAAAATAATCAAAAAAA--A-------AAAA--A-------------A-------------G---------------------------------------------AA---A--------------------------------AATCAAACGGAACTTAAGACTGATAAG-------------A---------AATCGAGAATTT----AATTCTAATGGG---------------------------------------------------------------------------------------------------------------ATAAAAGAAACAATACTTTCAAAATTA--------------------------------------------------------------------------------------------------------------------------------------------ATATTTAATAC------------------TT--T-----------------------------------------------------AAAGTTTACCATTTCAACTTTA
dp5 4_group3:8017341-8017651 - T--------------TTG---TTTTTGTTGTTGATCTTG--CACTTATCTA------------ATAACA-AAATAGTTGGCAGATAATAGTATTTTTGTTGT--TGT-------TTGACTTCGGAGGAAA-------------------------ATGTGCAATGAGAAA-----AACAAAAGATACATAGATACAGATAG-------------------------------------------------------------------------------------------A-------------A-----------TAGAGAATATACATAGA--------TAGGTATGTATGTATGGTAAAGGTAGATTGAAATAGAAAGTTGCGACTAGTTT----CTAATTTGATCAATATTATATGGCGATAATCATT--CAAATACTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--T------------TG-TTTCTTTTAGTGCTGGATTCTTACTGTACGGTAGTCCCCAAGCTCGTCATTTCTTTGGTC
droPer2 scaffold_1:9466896-9467229 - T--------------TTG---TTTTTGTTGTTGATCTTG--CACTTATCTA------------ATAACA-AAATAGTTGGCAGATAATAGTATTTTTGTTGT--TGT-------TTGAGTTCGGAGGAAA-------------------------ATGTGCAATGAGAAA-----AACAAAAGAT----AGATACAGATAG---------------------------------------------------------------------------ATGGATAGATAGATCAGATAAATATTTACAA-----------TAGAGAATATATAT--A--------TATGTATGTATGTATGGTAAAGGTAGATTGAAATAGAAAGTTGCGACTAGTTT----CTAAAATGATCAATATTATTTGGCGATAATCATT--CAAATACTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--T------------TG-TTTCTTTTAGTGCTGGATTCTTACTGTACGGTAGTCCCCAAGCTCGTCATTTCTTTGGTC
droWil2 scf2_1100000004585:4170983-4171173 - AA--------------------TGTTCTTGTTTATCAC------------------------------A-AAATAGTTGGCAGTTCTAATTG---TTGTTGT--TGT-------TGTTGTTAGTCCTATTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCACGTGCCA----GAAACCGTTA--------------------A-------------------------------AAATGGTTT------------------------------------------------------T-----------ATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT-C---AATTTGTTAT-TA--T------------TGTTTATTTTTAGTGCCGGACTTCTGCTCTACGAGTCGCCCCATATACGCAAATTCCTTGCCC
droVir3 scaffold_12963:16198409-16198619 - dvi_12220 AAAA-------------G---TTGTTGTTGTTTATCGCA--AGTTTATGGC------------AACAAC-AAATTGTTGGCAGCAGCTCCTAG-CTTGTTGA--TAT-------TTG-GGTCAAT-TAAAAACG--------------TC-----A------------A----------------------------------------------------------CAA---CAACAAAT--TGTAAAAGAACAACAGCACGTG--------------------------------------------------------------------------------------------------------------------------------------------TGTAT-------------------TTATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--AATTT-----------------CT--G------------TC-CTATTTTCAGCGCCGGCATCATACTCTACGAGACACCCCAAATCCGTAAATACTTCTCGC
droMoj3 scaffold_6500:5660961-5661201 - AAAA-------------G---TTGTTTTTGTTTGTGGCA--CGTTTTTGTC------------AACAAC-GTTTTATTGGCAGCACTTTCTGG-CTTGTTGA--TAT-------TTG-GGTTAAA-TAGAAAGAAA--ACAAGTCAAC--------------------GATAACGAGT-------------------------AAACAACAATAACAAGAGCGACAACAA---CAA-----------------------CATGCTAAA-----------------------------------------------------------------------------------------------------------------------------------------TATATCA-------------------ATTTACAAAAATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--A---------------------TA--C------------TT-TTTATTTTAGTGCCGGCATCATTCTATACGAGTCACCTCAAATCCGTAAATATTTATCGC
droGri2 scaffold_15252:13628925-13629135 - AACA-GT---TGTTATTG---TTATTGTTGTTTATCGCACACGTTTGGCACAAACAACAACAACAAAAC-AAATATTTGGCAGCATA-A------CCGTTGA--TAT-------TTA-GGTCAAC-AAAA------------------AC-----A------------A----------------------------------------------------------CAA---CAATCAATAATAGAATAGAATAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATTAATTGC--T------------GC-ACATTTTTAGCGCCGGCATCATTTTCTACGAGTCACCGCAAATCCGTAAATATTTCGCAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ATTT-GTTTTTGTTGTTGTTTTTGTTTTTGTTTACCTCA--CGTTTATCTC------------AATAACAAAATACTTGGCAGCTATAGTTG---TTGTTTC--TCA-------TTAAGGTCAAT-TAATAAGGGG--AAAAGTAAAA--------------------ATAATAGGGCAATAGGT------------------AATCCTCT--TGCAAGA----------------------------------------------------------------------------------------------GA-------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCTTTAATATTA-ATTA--------------A---ACTTCAAAATTCATTCAAC-TTCATTGCAGTGCTGGATTCTTACTTTACGAGGCGCCTCAGGTCCGCCGCTTCCTTGCTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................A--------------------ATAATAGGGCAATAGGT------------------AATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCCGCTTCCTTGCTC2011.001010000
droBip1
AATCGCCATTTGTTTTTGTTGTTGTTTTTGTTTACCTCA--CGTTTATCTC------------AATAACAAAATACTTGGCAGCTTTAGTTG---TTGTTTC--CAC-------T-GAGGTCGAT-TAATAAGGGG--AAAAGTCAAA--------------------ATAATAGGGTAATAGGT------------------AATCCCCGGGAGCAAGA---------A---CGG--------------------------------TTAGCCGAAGCC----------------------------------GA-------A---------GA---------------------------A----------------------TTTTTTG--AAAAAGTTT--------------------------------------------AAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--ATTTTC-C------------------A------------AC-TTCATTGCAGTGCTGGATTCTTGCTTTACGAGGCGCCACAGGTTCGCCGGTTCCTTGCTCSizeHit CountTotal NormTotal
No Reads
droKik1
---------------------------TTGTTTATTTCA--CTTTTATCCC------------AAAAAC-AAATTGTTGGCAACGGTAATTG---TTTTGGT--TCA-------AGAAAGATTAT-TAAACAACAA-------------C-----A------------A----------------------------------------------CATCAACAACAACAACAACAA-----------------------CAAGTG---------TTATGTTAATAATA------------------A---------TATCGAGTACCT----AAAAGCTTTGGTAACTCAACAAATATAAAAAA----------------------------------AATAT-------------------------------------------AATATTAAAATAAAGGATACAAGTTTGCTTATATTA--------------------------------------------------------------------------------------------------------------------------------------------TAATCTAATGG-AAAACCTTCCCTTA---AC--T------------TC-CAAATTTCAGGGCTGGTTTCCTGCTGTACGAGTCGCCGCAGGTGCGCAGCATCCTCTCTCSizeHit CountTotal NormTotal
No Reads
droFic1
AACTAGTCTTCGGGTTCG---TTGTTGTTGTTTATCTTA--CTTTTACCTC------------AATAAC-AAATAGTTGGCAGCAATTTGTG---TTGTTGT--TAT-------TTAAGGTCAAT-TAATTTAAAAA-----------AGA-AG-A------------A----------------------------------------------------------CAA---CAA-----------------------CTTGTTAAATAAAACGGAAGTTAGGATTGATAAG-------------ACTAAGTAGA------TA-------------------------------------------------------------GTCCCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTAATCTTG-ATTT------------------TT--T------------TA-TGTTTTCCAGTGCTGGTTTTTTGCTGTACGAGTCGCCGCAGGTGCGCAGGTTCCTTTCCCSizeHit CountTotal NormTotal
No Reads
droEle1
A----GTCTTTGGTTTCG---TTGTTGTTGTTTATCTCA--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCTTTAGGTG---TTGTTGT--TAT-------TTAAGGTCAAT-TAATCTGAAAA-----------AG-----A------------A----------------------------------------------------------CAA---CAA-----------------------CAAATGAAATAAAACGGAAGTTCCGATTGATAAG-------------A---------ATTTAAAA--------------------------------------------------------------------------GGTTT-------------------------------------------TAAATTTAAATA-------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------CTTSizeHit CountTotal NormTotal
No Reads
droRho1
T-------------------------TTTGTTTATTGTA--CTTTTACCTA------------CAAAAC-AATTTGTTGGCAGCGGTAATAG---TAATTGTGCTAA-------T-TAGATCATT-AAGTAACAAG----------------------TGATATTAAAATA---TAGAAAAAGCT----AAATTCAAATATGTAAAT------------A---------G---C-------------------------------------------------AATTGAACAG-------------A---------ATGGATAA--------------------------------------A-------------------------------ATGTGAATTAATATAT-------------------TAATT---------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------TT--AAAT------------------TA--T------------TT-TCTATTCCAGTGCTGGTTTTTTGCTGTACGAGTCGCCGCAGGTGCGCAGATTCCTCTCTCSizeHit CountTotal NormTotal
No Reads
droBia1
A----GTCTTCGGCTTCG---TTGTTGTTGTTTATCTCA--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCGATAGGTG---TTGTTGT--T-----------AAGGTCAAT-TAATCAAAAAA---T-------CG-----A------------A----------------------------------------------------------CAA---CAA-----------------------CAGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AACTAGTCTTCTGTTTCG---TTGTTGTTGTTTATCTCA--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCGATAGGTG---TTGTTGT--TAAGGTGTTGTTAAGGTCAAT-TAAACAGAAA-A--G-------AG-----A------------A----------------------------------------------------------GAA---CAG-----------------------CAAGTGGTATAAAACGGAAGTTAAGATTGATAAG-------------A---------ATTTAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AACTAGTCTTCGGTTT-T---TTGTTGTTGTTTATCT----CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCAATAGGTG---TTGTTGT--TAT-------TTAAGGTCAAT-TAGTCTTCAGC-----------AGA-AG-A------------A----------------------------------------------------------CAA---CAA-----------------------CATGAGAAATAAAACGGAAGTTAAGACTGATAAG-------------A---------TTGGAAAA--TGATTTAAA--------TCGGAACATTCAAAAAGCAAAAAGGGTTTTGATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAGTTGTTTAATTTAATAAACAATCAAAGTAC-TTTAAAATATATTGTACATAAGAAATGATTTTTA-------A---------------------TA--T------------TC-TCCATTTCAGTGCTGGTTTTCTGCTGTACGAATCACCACAGGTGCGCAGATTCCTTTCTCSizeHit CountTotal NormTotal
No Reads
dm3
AACGAGTCTTTGGATTCACTTTTGTTGTTGTTTATCTCA--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCTAAAGGTG---TTGTTGT--TAT-------TTAAGGTCAAAATAATCTAGAAAA--A-------ATAA--A-------------------------------------------------------------------------AA---C--------------------------------ATTCAAACGAAAGCTAAGAGTGATAAG-------------A---------AATCAAGAACTT----AAATCAAATGGG---------------------------------------------------------------------------------------------------------------TTC-----------ACTTTCAAAATTATTGATTCGAAGATTTATTAAAGTTGAAATGTTTTTATGAAAATTTTAAAAACTTATTTGTTGAATAAAAAAACAAGTAAAAGACTATCGTACATCATAACAGAATATTTAAAATATATAGCAT-------------------------------T------------------A------------CA-TTTTTTTCAGTGCTGGTTTCTTGCTGTACGAGTCGCCCCAGGTCCGCCGGTTCCTTTCCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTAAAAACTTATTTGTTGA..........................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GCTAAGAGTGATAAG-------------A---------AATCAAGAACT....................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GCTAAAGGTG---TTGTTGT--TAT-------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAAAAGACTATCGTACAT...........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGTCCGCCGGTTCCTTTC..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAAATGTTTTTATGAAAATTTT...........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTCGCCCCAGGTCCGCCGGTTC.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ATAAC-AAATAGTTGGCAGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGTCCGCCGGTTCCT.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTGCTGTACGAGTCGCCCCAGG..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTCGAAGATTTATT.......................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTCGCCCCAGGTCCGCCG...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGATTCGAAGATTTATTAAAGT..................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................AGGTG---TTGTTGT--TAT-------TTAAGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCGCCGGTTCCTTTC..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................A--CGTTTATCTC------------AATAAC-AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................AGCTAAGAGTGATAAG-------------A---------AATCAAGAACT....................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGTCGCCCCAGGTCCGCCGGTT........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ACTTTTGTTGTTGTTTATCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAAGATTTATTAAAGT..................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AAGAGTGATAAG-------------A---------AATCAAGAACT....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATTCGAAGATTTATTAAAGT..................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AAGCTAAGAGTGATAAG-------------A---------AATCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................................................................................................................................................................ATTCAAACGAAAGCTAAGAGTGATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTTTCTTGCTGTACGAGTCGCCC......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........TTTGGATTCACTTTTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGTCGCCCCAGGTCCGCC............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GAGTGATAAG-------------A---------AATCAAGAACTT----AAA............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACGAGTCGCCCCAGG..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGTACGAGTCGCCCCAGGTCCG..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................GTTTATCTCA--CGTTTATCTC------------AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTTAAAAACTTATTC...............................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AACTAGTCTTTGGATTCACTTTTGTTGTTGTTTATCTCG--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCTAAAGGTG---TTGTTGT--TAT-------TTAAGGTCAAAATAATCTAAAAAA--A-------ATAA--A-------------------------------------------------------------------------AA---C--------------------------------AATCAAACGGAAGTTAAGAGTGATAAG-------------A---------AATCAAGAACTT----AAATCAAATGGG---------------------------------------------------------------------------------------------------------------TTA-----------ACTTTCTAAATTATTGATTCGAAGATTTATAAAAGTTGAAATTTTTATATGGAAATATTAAGAACTTATTTGTTGAATAAAAAAACGAGTAGAACAATATTGTAAACCATAACAGAATATTTAAAATATATAGCAT-------------------------------T------------------A------------CT-TTTTTTTCAGTGCTGGTTTCTTGCTGTACGAGTCGCCCCAGGTCCGCCGGTTCCTTTCCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATAAAAAAACGAGTAGAACAATA...................................................................................................................................................................2611.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATAAAAAAACGAGTAGAACAAT....................................................................................................................................................................2711.00100100000000000000
...............................................................................................................................................................................................................................................................................AACGGAAGTTAAGAGTGATAAG-------------A---------...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................AAATGGG---------------------------------------------------------------------------------------------------------------TTA-----------ACTTT.................................................................................................................................................................................................................................................................1530.67200000000002000000
droSec2
AACTAGTCTTTGATTTCACTTTTGTTGTTGTTTATCTCG--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCTAAAGGTG---TTGTTGT--TAT-------TTAAGGTCAAAATAATCTAAAAAA--A-------ATAA--A-------------------------------------------------------------------------AA---C--------------------------------AATCAAACGGAAGTTAAGAGTGATAAG-------------A---------AATCAAGAACTT----AAATCAAATGGG---------------------------------------------------------------------------------------------------------------TTC-----------ACTTTCTAAATTATTGATTCGAAGATTTATAAAAGTTGAAATGTTTATATGGAAATATTAA-AACTTATTTGTTATATAAGAAAACGAGTAGAACAATATTGTAAACCATAACAGAATATTTAAAATATATAGTAT-------------------------------T------------------A------------CT-TTTTTTTCAGTGCTGGTTTCTTGCTGTACGAGTCGCCCCAGGTCCGCCGGTTCCTTTCCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCTGTACGAGTCGCCCC.....................2111.0010001
...............................................................................GCAGCTAAAGGTG---TTGTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................................................................................................................................AGTTAAGAGTGATAAG-------------A---------AATCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTTTCTTGCTGTACG..............................1911.0010100
............................................................................................................................................................................................................................................................................................................................AATCAAGAACTT----AAATCAAATGGG---------------------------------------------------------------------------------------------------------------T...................................................................................................................................................................................................................................................................................2511.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGTCGCCCCAGGTC................1811.0010010
....................................................................................TAAAGGTG---TTGTTGT--TAT-------TTAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
droYak3
A-CTAGTCTTCGGATTCGTATTTGTTGTTGTTTATCTCG--CGTTTATCTC------------AATAAC-AAATAGTTGGCAGCAAAAGGTG---TTGTTGT--TAT-------TTAAGGTCAAAATAATCAAGAAAA--A-------A-----G-------------------------------------------------------------------------AA---C--------------------------------AATCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................GTTTATCTC------------AATAAC-AAATAGTTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000
..........................GTTGTTTATCTCG--CGTTTATCTC------------AATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
A----GTCTTCGCATTTG---TTGTTGTTTTTTATCTCG--CGTTTAGCTC------------AATAAC-AAATAGTTGGCAGCAAAAGGTC---TTGTTGT--TAT-------TTAAGGTCAAAATAATCAAAAAAA--A-------AAAA--A-------------A-------------G---------------------------------------------AA---A--------------------------------AATCAAACGGAACTTAAGACTGATAAG-------------A---------AATCGAGAATTT----AATTCTAATGGG---------------------------------------------------------------------------------------------------------------ATAAAAGAAACAATACTTTCAAAATTA--------------------------------------------------------------------------------------------------------------------------------------------ATATTTAATAC------------------TT--T-----------------------------------------------------AAAGTTTACCATTTCAACTTTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
T--------------TTG---TTTTTGTTGTTGATCTTG--CACTTATCTA------------ATAACA-AAATAGTTGGCAGATAATAGTATTTTTGTTGT--TGT-------TTGACTTCGGAGGAAA-------------------------ATGTGCAATGAGAAA-----AACAAAAGATACATAGATACAGATAG-------------------------------------------------------------------------------------------A-------------A-----------TAGAGAATATACATAGA--------TAGGTATGTATGTATGGTAAAGGTAGATTGAAATAGAAAGTTGCGACTAGTTT----CTAATTTGATCAATATTATATGGCGATAATCATT--CAAATACTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--T------------TG-TTTCTTTTAGTGCTGGATTCTTACTGTACGGTAGTCCCCAAGCTCGTCATTTCTTTGGTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................GT--TGT-------TTGACTTCGGAGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
..........................................................................................................................GGAGGAAA-------------------------ATGTGCAATGAGAAA-----AACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTCCCCAAGCTCGTCAT..........2011.0010000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTCTTACTGTACGGTAGT.........................2411.0010010000000
droPer2
T--------------TTG---TTTTTGTTGTTGATCTTG--CACTTATCTA------------ATAACA-AAATAGTTGGCAGATAATAGTATTTTTGTTGT--TGT-------TTGAGTTCGGAGGAAA-------------------------ATGTGCAATGAGAAA-----AACAAAAGAT----AGATACAGATAG---------------------------------------------------------------------------ATGGATAGATAGATCAGATAAATATTTACAA-----------TAGAGAATATATAT--A--------TATGTATGTATGTATGGTAAAGGTAGATTGAAATAGAAAGTTGCGACTAGTTT----CTAAAATGATCAATATTATTTGGCGATAATCATT--CAAATACTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--T------------TG-TTTCTTTTAGTGCTGGATTCTTACTGTACGGTAGTCCCCAAGCTCGTCATTTCTTTGGTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCCCAAGCTCGTCATT.........1911.001100000
..............................................................................................TTTGTTGT--TGT-------TTGAGTTCGGAGGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCCCAAGCTCGTCAT..........1811.001100000
droWil2
AA--------------------TGTTCTTGTTTATCAC------------------------------A-AAATAGTTGGCAGTTCTAATTG---TTGTTGT--TGT-------TGTTGTTAGTCCTATTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCACGTGCCA----GAAACCGTTA--------------------A-------------------------------AAATGGTTT------------------------------------------------------T-----------ATTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT-C---AATTTGTTAT-TA--T------------TGTTTATTTTTAGTGCCGGACTTCTGCTCTACGAGTCGCCCCATATACGCAAATTCCTTGCCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGACTTCTGCTCTACGAGT...........................2213.00330000
.....................................................................................................................................................................................................................................................................................................................................CCA----GAAACCGTTA--------------------A-------------------------------AAATGGT..........................................................................................................................................................................................................................................................................................................................................2111.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGACTTCTGCTCTACGAGTCGCCC......................2811.00110000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACTTCTGCTCTACGAGTCGCCCC.....................2611.00110000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACTTCTGCTCTACGAGT...........................2011.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGACTTCTGCTCTACGAGTCGCCCC.....................2911.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAT-TA--T------------TGTTTATTTTTAG..................................................2411.00100010
droVir3
AAAA-------------G---TTGTTGTTGTTTATCGCA--AGTTTATGGC------------AACAAC-AAATTGTTGGCAGCAGCTCCTAG-CTTGTTGA--TAT-------TTG-GGTCAAT-TAAAAACG--------------TC-----A------------A----------------------------------------------------------CAA---CAACAAAT--TGTAAAAGAACAACAGCACGTG--------------------------------------------------------------------------------------------------------------------------------------------TGTAT-------------------TTATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC--AATTT-----------------CT--G------------TC-CTATTTTCAGCGCCGGCATCATACTCTACGAGACACCCCAAATCCGTAAATACTTCTCGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................GTTGGCAGCAGCTCCTAG-CTTGTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
AAAA-------------G---TTGTTTTTGTTTGTGGCA--CGTTTTTGTC------------AACAAC-GTTTTATTGGCAGCACTTTCTGG-CTTGTTGA--TAT-------TTG-GGTTAAA-TAGAAAGAAA--ACAAGTCAAC--------------------GATAACGAGT-------------------------AAACAACAATAACAAGAGCGACAACAA---CAA-----------------------CATGCTAAA-----------------------------------------------------------------------------------------------------------------------------------------TATATCA-------------------ATTTACAAAAATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--A---------------------TA--C------------TT-TTTATTTTAGTGCCGGCATCATTCTATACGAGTCACCTCAAATCCGTAAATATTTATCGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGAGTCACCTCAAATCCGTA............2311.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGTCACCTCAAATCCG..............2011.001100000
...........................................................................ATTGGCAGCACTTTCTGG-CT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
AACA-GT---TGTTATTG---TTATTGTTGTTTATCGCACACGTTTGGCACAAACAACAACAACAAAAC-AAATATTTGGCAGCATA-A------CCGTTGA--TAT-------TTA-GGTCAAC-AAAA------------------AC-----A------------A----------------------------------------------------------CAA---CAATCAATAATAGAATAGAATAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTATTAATTGC--T------------GC-ACATTTTTAGCGCCGGCATCATTTTCTACGAGTCACCGCAAATCCGTAAATATTTCGCACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:33 PM