ID:

dan_5

 Coordinate:

scaffold_13340:11127750-11127807 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.1 -38.3 -38.3

Flybase annnotation

intron [Dana\GF18201-in]; utr5 [utr5_plus_9305]

No Repeatable elements found

Sense Strand Reads

TTCCCCAGCCACCAACCAACCAACCAACCAACCACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGAGACAACGACTACGTGGTGGCCTAAAAAGTGTTAGC

***********************************.((((.....(((((((.((((((((..((((((((((((.....))).)))))))))..)))))))).)))))))....))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V106

head

 V055

head

 V105

male body		 M044

female body

 M058

embryo

 V039

embryo
..................................................AAATTGACTCTAGTAGGGAGT....................................................................................... 21 0 1 48433.00 48433 38113 4399 5649 61 108 103
..................................................AAATTGACTCTAGTAGGGAGTC...................................................................................... 22 0 1 14519.00 14519 8687 4435 1114 55 180 48
......................................................................................CTCCCTAACGGAGTCAGATTG................................................... 21 0 1 5341.00 5341 3246 1684 46 362 1 2
..................................................AAATTGACTCTAGTAGGGAGTCA..................................................................................... 23 1 1 3204.00 3204 2241 836 108 14 3 2
..................................................AAATTGACTCTAGTAGGGAGTCT..................................................................................... 23 1 1 1174.00 1174 681 373 91 8 17 4
..................................................AAATTGACTCTAGTAGGGAG........................................................................................ 20 0 1 963.00 963 376 403 162 17 5 0
...................................................AATTGACTCTAGTAGGGAGT....................................................................................... 20 0 1 830.00 830 648 60 119 3 0 0
..................................................AAATTGACTCTAGTAGGGAGTCG..................................................................................... 23 1 1 604.00 604 356 177 59 11 0 1
......................................................................................CTCCCTAACGGAGTCAGATTGA.................................................. 22 0 1 593.00 593 42 518 2 31 0 0
..................................................AAATTGACTCTAGTATGGAGT....................................................................................... 21 1 1 367.00 367 321 17 25 0 0 4
..................................................AAATTGACTCTAGTAGGGT......................................................................................... 19 1 1 366.00 366 269 25 72 0 0 0
..................................................AAATTGACTCTAGTAGGGAGA....................................................................................... 21 1 1 340.00 340 257 18 65 0 0 0
..................................................AAATTGACTCTAGTAGGTAGT....................................................................................... 21 1 1 331.00 331 297 15 18 0 0 1
....................................................ATTGACTCTAGTAGGGAGT....................................................................................... 19 0 1 315.00 315 291 13 10 1 0 0
..................................................AAATTGACTCTAGTAGGGAGTTT..................................................................................... 23 2 1 297.00 297 155 99 36 6 0 1
..................................................AAATTGACTATAGTAGGGAGT....................................................................................... 21 1 1 265.00 265 236 4 25 0 0 0
..................................................AAATTGACTCTAGTAGGGA......................................................................................... 19 0 1 252.00 252 104 83 59 4 0 2
..................................................AAATTGACTCTAGTAGGGAGTTA..................................................................................... 23 2 1 245.00 245 129 88 24 4 0 0
..................................................AAATTGACTCTAGTAGTGAGT....................................................................................... 21 1 1 243.00 243 216 15 12 0 0 0
..................................................AAATTGACTCTAGTAGGG.......................................................................................... 18 0 1 220.00 220 99 107 2 11 1 0
..................................................AAATTGACTCTAGTAGGGAGC....................................................................................... 21 1 1 191.00 191 113 26 32 0 20 0
..................................................AAATTTACTCTAGTAGGGAGT....................................................................................... 21 1 1 178.00 178 153 4 20 0 0 1
..................................................AAATTGACTCTAGTAGGT.......................................................................................... 18 1 1 155.00 155 95 59 1 0 0 0
...................................................AATTGACTCTAGTAGGGAGTC...................................................................................... 21 0 1 155.00 155 59 85 3 5 3 0
..................................................AAGTTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 148.00 148 138 7 2 0 0 1
..................................................AAATTGACTCTAGTAGGGAGTT...................................................................................... 22 1 1 117.00 117 55 49 13 0 0 0
..................................................AAATTGACTCTAGTAGGTAGTC...................................................................................... 22 1 1 108.00 108 91 13 4 0 0 0
..................................................AAATTGACTCTAGTATGGAGTC...................................................................................... 22 1 1 108.00 108 82 16 7 0 2 1
..................................................AAATTGACTCTAGCAGGGAGT....................................................................................... 21 1 1 107.00 107 60 39 6 0 1 1
..................................................AAATTGACTCTAGTGGGGAGT....................................................................................... 21 1 1 86.00 86 66 15 5 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCC..................................................................................... 23 0 1 84.00 84 44 22 6 0 11 1
.......................................................................................TCCCTAACGGAGTCAGATTG................................................... 20 0 1 83.00 83 33 12 0 38 0 0
..................................................AAATTGACTCTAGTAGGGAGG....................................................................................... 21 1 1 80.00 80 37 23 20 0 0 0
..................................................AAATTGACTCTCGTAGGGAGT....................................................................................... 21 1 1 79.00 79 25 28 25 0 0 1
..................................................AAATTGACTCTAGTAGGGAGTTG..................................................................................... 23 2 1 73.00 73 30 27 15 1 0 0
..................................................AAATTGACTCTGGTAGGGAGT....................................................................................... 21 1 1 72.00 72 38 16 18 0 0 0
..................................................AGATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 69.00 69 44 6 13 0 6 0
..................................................AAATTGACTCTATTAGGGAGT....................................................................................... 21 1 1 68.00 68 46 9 11 0 0 2
..................................................AAATTGACTCTAGTAGGGAGCC...................................................................................... 22 1 1 68.00 68 34 27 7 0 0 0
..................................................AAATTGACTCTAGTAGTGAGTC...................................................................................... 22 1 1 68.00 68 48 19 1 0 0 0
..................................................AAATTGACTCTAGTAGGGAGAC...................................................................................... 22 1 1 66.00 66 48 4 13 0 1 0
.......................................................................................TCCCTAACGGAGTCAGATTGA.................................................. 21 0 1 63.00 63 36 16 0 8 3 0
..................................................AAATTGACTATAGTAGGGAGTC...................................................................................... 22 1 1 59.00 59 48 7 4 0 0 0
..................................................AAATTGACTCTAGTAGGGATT....................................................................................... 21 1 1 59.00 59 48 8 3 0 0 0
..................................................AAATTGGCTCTAGTAGGGAGT....................................................................................... 21 1 1 54.00 54 42 9 3 0 0 0
..................................................GAATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 54.00 54 44 8 2 0 0 0
..................................................AAATTGACTCTAGTAGGGGGT....................................................................................... 21 1 1 51.00 51 39 8 3 0 0 1
..................................................AAATTGACTCTAGTAGGGAGTA...................................................................................... 22 1 1 50.00 50 31 17 1 0 1 0
..................................................AAATTGACTCTAGTAAGGAGT....................................................................................... 21 1 1 49.00 49 30 7 12 0 0 0
..................................................AAATTGACCCTAGTAGGGAGT....................................................................................... 21 1 1 49.00 49 41 2 2 2 0 2
......................................................................................CTCCCTAACGGAGTCAGATTT................................................... 21 1 1 48.00 48 44 3 1 0 0 0
......................................................................................CTACCTAACGGAGTCAGATTG................................................... 21 1 1 47.00 47 42 5 0 0 0 0
..................................................AAGTTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 46.00 46 40 6 0 0 0 0
..................................................AAATTGACTCTAGTAGGGCGT....................................................................................... 21 1 1 46.00 46 12 33 0 0 0 1
......................................................................................CTCCCTAACGGAGTCAGATT.................................................... 20 0 1 43.00 43 5 22 0 16 0 0
..................................................AAATTTACTCTAGTAGGGAGTC...................................................................................... 22 1 1 43.00 43 37 3 1 0 2 0
..................................................AAATTGAATCTAGTAGGGAGT....................................................................................... 21 1 1 42.00 42 26 14 1 0 1 0
..................................................AAATTGACTCTAGTACGGAGT....................................................................................... 21 1 1 42.00 42 15 12 15 0 0 0
..................................................AAATTGACTCTAGCAGGGAGTC...................................................................................... 22 1 1 42.00 42 8 28 6 0 0 0
..................................................AAATTGACTCCAGTAGGGAGT....................................................................................... 21 1 1 41.00 41 30 5 6 0 0 0
..................................................AAATCGACTCTAGTAGGGAGT....................................................................................... 21 1 1 41.00 41 30 6 5 0 0 0
..................................................AAATTGACTCTAGGAGGGAGT....................................................................................... 21 1 1 41.00 41 5 30 5 0 0 1
..................................................AAACTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 40.00 40 19 17 4 0 0 0
......................................................................................CTCACTAACGGAGTCAGATTG................................................... 21 1 1 40.00 40 33 7 0 0 0 0
..................................................AAATTGACTCTAGTAGCGAGT....................................................................................... 21 1 1 40.00 40 23 15 2 0 0 0
......................................................................................ATCCCTAACGGAGTCAGATTG................................................... 21 1 1 39.00 39 23 16 0 0 0 0
..................................................AAATTGACTCTAGTAGAGAGT....................................................................................... 21 1 1 38.00 38 28 8 2 0 0 0
..................................................AAATTGACTCTACTAGGGAGT....................................................................................... 21 1 1 37.00 37 22 4 11 0 0 0
..................................................AAATTGACTCTAGTAGGGAGGC...................................................................................... 22 1 1 36.00 36 6 24 5 0 1 0
..................................................AAATTCACTCTAGTAGGGAGT....................................................................................... 21 1 1 36.00 36 24 10 2 0 0 0
..................................................AAATTGACTCTAGAAGGGAGT....................................................................................... 21 1 1 36.00 36 6 22 8 0 0 0
......................................................................................CTCCATAACGGAGTCAGATTG................................................... 21 1 1 35.00 35 29 6 0 0 0 0
..................................................AAATTGACTCTAGTAGGGATTC...................................................................................... 22 1 1 35.00 35 21 13 1 0 0 0
..................................................AAATGGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 34.00 34 2 31 0 0 0 1
..................................................AAATTGACTCTAGTCGGGAGT....................................................................................... 21 1 1 34.00 34 10 19 1 0 3 1
..................................................AAATTGACTCTATTAGGGAGTC...................................................................................... 22 1 1 34.00 34 12 16 6 0 0 0
..................................................AAATTGACTCTAGTGGGGAGTC...................................................................................... 22 1 1 32.00 32 18 12 0 1 1 0
..................................................AAATTGACTCTAATAGGGAGT....................................................................................... 21 1 1 31.00 31 12 1 17 0 0 1
..................................................AAAGTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 31.00 31 0 28 3 0 0 0
..................................................AAATTGACTCTAGGAGGGAGTC...................................................................................... 22 1 1 29.00 29 1 23 3 1 0 1
..................................................AAATTGACTCTAGTAGGCAGT....................................................................................... 21 1 1 28.00 28 10 11 7 0 0 0
..................................................AAATGGACTCTAGTAGGGAGT....................................................................................... 21 1 1 28.00 28 5 23 0 0 0 0
.................................................CAAATTGACTCTAGTAGGGAGT....................................................................................... 22 0 1 28.00 28 11 2 12 1 1 1
..................................................AAATTGACTCTAGAAGGGAGTC...................................................................................... 22 1 1 27.00 27 0 23 4 0 0 0
..................................................AAATTGACTCTGGTAGGGAGTC...................................................................................... 22 1 1 27.00 27 7 14 6 0 0 0
..................................................ACATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 26.00 26 13 2 11 0 0 0
......................................................................................CTCCCTAACGGCGTCAGATTG................................................... 21 1 1 26.00 26 5 21 0 0 0 0
..................................................AAATTGACTCTAGTAGCGAGTC...................................................................................... 22 1 1 26.00 26 6 19 1 0 0 0
..................................................AAAGTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 26.00 26 1 25 0 0 0 0
..................................................AGATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 26.00 26 7 7 1 0 11 0
..................................................AAATTGACTCTTGTAGGGAGT....................................................................................... 21 1 1 25.00 25 7 2 16 0 0 0
..................................................AAATTGACTCTCGTAGGGAGTC...................................................................................... 22 1 1 25.00 25 5 17 3 0 0 0
......................................................................................CTCCCTAACGTAGTCAGATTG................................................... 21 1 1 25.00 25 23 2 0 0 0 0
..................................................AAATTGACTCTAGTAGGAAGT....................................................................................... 21 1 1 25.00 25 18 4 3 0 0 0
......................................................................................CTCCCTAACGGAGCCAGATTG................................................... 21 1 1 23.00 23 8 14 1 0 0 0
..................................................AAATCGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 23.00 23 7 15 1 0 0 0
..................................................AAATTGACTCTAGTAGGGGGTC...................................................................................... 22 1 1 22.00 22 8 14 0 0 0 0
..................................................AAATTGATTCTAGTAGGGAGT....................................................................................... 21 1 1 22.00 22 18 3 1 0 0 0
..................................................AAATTGACTCTAGTAAGGAGTC...................................................................................... 22 1 1 21.00 21 6 11 3 0 0 1
..................................................AAATTAACTCTAGTAGGGAGT....................................................................................... 21 1 1 21.00 21 15 3 3 0 0 0
..................................................AAATTGACTCTACTAGGGAGTC...................................................................................... 22 1 1 21.00 21 10 6 5 0 0 0
..................................................AAATTGACTCTAGTAGGGACT....................................................................................... 21 1 1 21.00 21 13 6 2 0 0 0
..................................................GAATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 21.00 21 14 5 2 0 0 0
..................................................AAATTGACTTTAGTAGGGAGT....................................................................................... 21 1 1 21.00 21 18 2 1 0 0 0
....................................................ATTGACTCTAGTAGGGAGTC...................................................................................... 20 0 1 21.00 21 4 16 1 0 0 0
..................................................AAATTGACTCTAGTAGGTAGTCA..................................................................................... 23 2 1 20.00 20 16 3 1 0 0 0
..................................................AAAATGACTCTAGTAGGGAGT....................................................................................... 21 1 1 20.00 20 5 1 14 0 0 0
..................................................AAATTGACTCTAGTACGGAGTC...................................................................................... 22 1 1 20.00 20 3 13 4 0 0 0
..................................................AAATTGACTCTAGTAGGGTGT....................................................................................... 21 1 1 19.00 19 0 19 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGACA..................................................................................... 23 2 1 19.00 19 15 2 2 0 0 0
..................................................AAATTGACTCCAGTAGGGAGTC...................................................................................... 22 1 1 19.00 19 9 7 3 0 0 0
..................................................AAACTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 18.00 18 6 11 0 0 1 0
..................................................AAATTGACTCTAGTCGGGAGTC...................................................................................... 22 1 1 18.00 18 1 16 1 0 0 0
..................................................AAATTGACTCTAGTAGGGCGTC...................................................................................... 22 1 1 18.00 18 1 16 1 0 0 0
...................................................AAATTACTCTAGTAGGGAGT....................................................................................... 20 2 1 18.00 18 16 0 2 0 0 0
..................................................AAATTGACTATAGTAGGGAGTCA..................................................................................... 23 2 1 18.00 18 14 3 1 0 0 0
..................................................AAATTGACTCTAGTAGGGACTC...................................................................................... 22 1 1 18.00 18 3 14 0 0 0 1
......................................................................................CTCCCTAACTGAGTCAGATTG................................................... 21 1 1 17.00 17 15 2 0 0 0 0
..................................................AAATTGACTCTAGTATGGAGTCA..................................................................................... 23 2 1 17.00 17 11 5 1 0 0 0
..................................................AAATTGACTCAAGTAGGGAGT....................................................................................... 21 1 1 17.00 17 2 2 13 0 0 0
..................................................AAATTGACTCTAGTAGGCAGTC...................................................................................... 22 1 1 17.00 17 3 14 0 0 0 0
..................................................AAATTGACTCGAGTAGGGAGT....................................................................................... 21 1 1 17.00 17 4 6 7 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCTT.................................................................................... 24 1 1 16.00 16 9 5 1 1 0 0
..................................................TAATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 16.00 16 9 4 1 0 1 1
......................................................................................CTCCCTAACGGAGTCAGGTTG................................................... 21 1 1 16.00 16 9 7 0 0 0 0
..................................................AAATTGACCCTAGTAGGGAGTC...................................................................................... 22 1 1 16.00 16 9 5 2 0 0 0
..................................................AACTTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 15.00 15 7 3 4 0 1 0
..................................................AAATTGACTCTAGTAGGGAGTAT..................................................................................... 23 2 1 15.00 15 10 5 0 0 0 0
......................................................................................TTCCCTAACGGAGTCAGATTG................................................... 21 1 1 15.00 15 2 13 0 0 0 0
......................................................................................CTCCCTAACGGAGTCATATTG................................................... 21 1 1 15.00 15 13 2 0 0 0 0
..................................................AAATTGACGCTAGTAGGGAGT....................................................................................... 21 1 1 15.00 15 3 7 1 4 0 0
..................................................CAATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 15.00 15 9 4 2 0 0 0
..................................................AAATTGTCTCTAGTAGGGAGT....................................................................................... 21 1 1 14.00 14 7 7 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTG...................................................................................... 22 1 1 14.00 14 6 7 1 0 0 0
..................................................AAATAGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 14.00 14 3 11 0 0 0 0
..................................................AAATTGACTCTAGTATGGAG........................................................................................ 20 1 1 14.00 14 7 4 3 0 0 0
..................................................ATATTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 14.00 14 6 2 6 0 0 0
...................................................AATTGACTCTAGTAGGGAG........................................................................................ 19 0 1 14.00 14 6 8 0 0 0 0
..................................................AAATTGCCTCTAGTAGGGAGT....................................................................................... 21 1 1 14.00 14 4 8 1 0 0 1
..................................................AAATTTACTCTAGTATGGAGT....................................................................................... 21 2 1 14.00 14 12 1 1 0 0 0
......................................................................................CTCCCTAAAGGAGTCAGATTG................................................... 21 1 1 13.00 13 1 7 0 5 0 0
..................................................AAATTGACTCTAGTAGTGAGTCA..................................................................................... 23 2 1 13.00 13 8 5 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTGT..................................................................................... 23 2 1 13.00 13 1 9 3 0 0 0
..................................................AAATTGACTCTAGTAGGAAGTC...................................................................................... 22 1 1 13.00 13 6 7 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAT........................................................................................ 20 1 1 13.00 13 6 5 2 0 0 0
..................................................AATTTGACTCTAGTAGGGAGT....................................................................................... 21 1 1 13.00 13 12 0 1 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTAA..................................................................................... 23 2 1 12.00 12 7 3 1 1 0 0
..................................................AAATTGACACTAGTAGGGAGT....................................................................................... 21 1 1 12.00 12 6 2 2 2 0 0
..................................................AAATTGACTCTTGTAGGGAGTC...................................................................................... 22 1 1 12.00 12 2 6 4 0 0 0
......................................................................................CTCCCTAAGGGAGTCAGATTG................................................... 21 1 1 12.00 12 0 1 0 11 0 0
......................................................................................CTCCCTAACGGAGTCAGAGTG................................................... 21 1 1 11.00 11 1 10 0 0 0 0
...................................................AATTTACTCTAGTAGGGAGT....................................................................................... 20 1 1 11.00 11 10 0 1 0 0 0
......................................................................................CTCCCTAACGGAGGCAGATTG................................................... 21 1 1 11.00 11 0 11 0 0 0 0
..................................................AAATTGAATCTAGTAGGGAGTC...................................................................................... 22 1 1 11.00 11 4 7 0 0 0 0
......................................................................................CTCCCTAACGGAGTAAGATTG................................................... 21 1 1 11.00 11 10 0 0 1 0 0
......................................................................................CTCCCTAACGGAGTCAGATTC................................................... 21 1 1 11.00 11 7 4 0 0 0 0
......................................................................................CTCCCTAACGCAGTCAGATTG................................................... 21 1 1 11.00 11 2 9 0 0 0 0
......................................................................................CTCCCTAACGGAGTCAGCTTG................................................... 21 1 1 11.00 11 2 9 0 0 0 0
..................................................TAATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 11.00 11 1 10 0 0 0 0
..................................................AAATTGACTCTAGTAGGTAG........................................................................................ 20 1 1 11.00 11 6 4 1 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCTTT................................................................................... 25 1 1 10.00 10 5 4 1 0 0 0
..................................................AAATTGGCTCTAGTAGGGAGTC...................................................................................... 22 1 1 10.00 10 6 3 0 0 1 0
..................................................AAATTGACTCTAGTATGGAGTCT..................................................................................... 23 2 1 10.00 10 8 1 1 0 0 0
..................................................AAATTGACTCTAGTAGGGTGTC...................................................................................... 22 1 1 10.00 10 0 9 0 0 1 0
.................................................CAAATTGACTCTAGTAGGGAGTC...................................................................................... 23 0 1 10.00 10 5 1 1 0 3 0
..................................................AAATTGACTCTAGTAGAGAGTC...................................................................................... 22 1 1 10.00 10 5 5 0 0 0 0
..................................................AACTTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 10.00 10 5 5 0 0 0 0
..................................................ATATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 10.00 10 2 3 3 0 1 1
..................................................AAATTGACTCTAGCAGGGAGTCA..................................................................................... 23 2 1 10.00 10 3 7 0 0 0 0
..................................................AAATTGATTCTAGTAGGGAGTC...................................................................................... 22 1 1 9.00 9 2 6 1 0 0 0
......................................................................................CTCCTTAACGGAGTCAGATTG................................................... 21 1 1 9.00 9 3 6 0 0 0 0
..................................................AAATAGACTCTAGTAGGGAGT....................................................................................... 21 1 1 9.00 9 4 5 0 0 0 0
......................................................................................CTCCCTAACGGAGTCAGATGG................................................... 21 1 1 9.00 9 0 8 0 1 0 0
......................................................................................CTCCCTAACGGAGTCAGATTA................................................... 21 1 1 9.00 9 9 0 0 0 0 0
..................................................AAATTGACTCTAGTAGTGAG........................................................................................ 20 1 1 9.00 9 3 5 1 0 0 0
..................................................AAATTGACTCTAGTAGGGGGTCA..................................................................................... 23 2 1 9.00 9 1 7 1 0 0 0
......................................................................................CTCCCTAATGGAGTCAGATTG................................................... 21 1 1 9.00 9 5 2 0 2 0 0
..................................................AAATTGACTCTAGTTGGGAGT....................................................................................... 21 1 1 9.00 9 5 3 0 0 0 1
..................................................AAATTGACTCTAGTAGGGAGCCA..................................................................................... 23 2 1 9.00 9 6 3 0 0 0 0
..................................................AAATTAACTCTAGTAGGGAGTC...................................................................................... 22 1 1 9.00 9 3 5 1 0 0 0
..................................................AAATTGACTCTAGGAGGGAGTCA..................................................................................... 23 2 1 9.00 9 0 9 0 0 0 0
...................................................AATTGACTCTAGTAGGGA......................................................................................... 18 0 1 8.00 8 1 4 0 3 0 0
......................................................................................CTCCCTAACGGAGTCAGATTGAA................................................. 23 0 1 8.00 8 2 3 0 2 1 0
..........................................................................................CTAACGGAGTCAGATTGA.................................................. 18 0 1 8.00 8 6 2 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAAT....................................................................................... 21 1 1 8.00 8 6 2 0 0 0 0
......................................................................................CTCCCTAACGGAGACAGATTG................................................... 21 1 1 8.00 8 2 6 0 0 0 0
..................................................AAAGTGACTCTAGGAGGGAGTC...................................................................................... 22 2 1 8.00 8 0 8 0 0 0 0
..................................................AAATTGACTCTAGTAGG........................................................................................... 17 0 1 8.00 8 0 8 0 0 0 0
..................................................AAATTGACTCTAGCAGGGAGCC...................................................................................... 22 2 1 8.00 8 1 7 0 0 0 0
..................................................AAATTGTCTCTAGTAGGGAGTC...................................................................................... 22 1 1 8.00 8 1 7 0 0 0 0
......................................................................................CTCCCTAACGGAGTCAGTTTG................................................... 21 1 1 8.00 8 1 7 0 0 0 0
......................................................................................CTCCCTAACGGAGTCAGACTG................................................... 21 1 1 8.00 8 1 7 0 0 0 0
..................................................AAATTGAATCTAGTAGGGAGTCA..................................................................................... 23 2 1 8.00 8 4 4 0 0 0 0
......................................................................................CTCCCTAGCGGAGTCAGATTG................................................... 21 1 1 8.00 8 5 3 0 0 0 0
......................................................................................CTCCCTAACGGATTCAGATTG................................................... 21 1 1 8.00 8 5 3 0 0 0 0
..................................................AAATTGACTCTAGAAGGGAGTCA..................................................................................... 23 2 1 8.00 8 1 7 0 0 0 0
..................................................AAATTGCCTCTAGTAGGGAGTC...................................................................................... 22 1 1 8.00 8 1 6 1 0 0 0
..................................................AAATGGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 7.00 7 0 7 0 0 0 0
...................................................AAATGACTCTAGTAGGGAGT....................................................................................... 20 1 1 7.00 7 4 2 1 0 0 0
......................................................................................CGCCCTAACGGAGTCAGATTG................................................... 21 1 1 7.00 7 1 6 0 0 0 0
......................................................................................CTCCCTAACGGGGTCAGATTG................................................... 21 1 1 7.00 7 2 5 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAA........................................................................................ 20 1 1 7.00 7 0 5 1 1 0 0
...................................................AATTGACTCTAGTATGGAGT....................................................................................... 20 1 1 7.00 7 6 0 1 0 0 0
..................................................AAATTGACTCCAGTAGGGAGTCA..................................................................................... 23 2 1 7.00 7 5 2 0 0 0 0
......................................................................................CTCCCCAACGGAGTCAGATTG................................................... 21 1 1 7.00 7 5 2 0 0 0 0
...................................................AAGTGACTCTAGTAGGGAGT....................................................................................... 20 1 1 7.00 7 5 2 0 0 0 0
..................................................AAAGGGACTCTAGTAGGGAGTC...................................................................................... 22 2 1 7.00 7 0 7 0 0 0 0
......................................................................................GTCCCTAACGGAGTCAGATTG................................................... 21 1 1 7.00 7 1 4 0 2 0 0
......................................................................................CCCCCTAACGGAGTCAGATTG................................................... 21 1 1 7.00 7 5 1 1 0 0 0
..................................................AAATTGACTCTAGTAGGGAGGCA..................................................................................... 23 2 1 7.00 7 4 2 1 0 0 0
..................................................AAAGTGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 7.00 7 0 6 0 0 1 0
..................................................AAATTCACTCTAGTAGGGAGTC...................................................................................... 22 1 1 7.00 7 1 6 0 0 0 0
..................................................AAATTGACTTTAGTAGGGAGTC...................................................................................... 22 1 1 7.00 7 5 2 0 0 0 0
..................................................ACATTGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 7.00 7 1 2 4 0 0 0
......................................................................................CTCCCTAACGGCGTCAGATTGA.................................................. 22 1 1 7.00 7 0 7 0 0 0 0
......................................................................................CTCCCTAACGGACTCAGATTG................................................... 21 1 1 7.00 7 3 2 0 2 0 0
......................................................................................CTCCCTAACGGAGTCAGATTGAT................................................. 23 1 1 7.00 7 3 4 0 0 0 0
......................................................................................CTCCCGAACGGAGTCAGATTG................................................... 21 1 1 7.00 7 0 7 0 0 0 0
.........................................................................................CCTAACGGAGTCAGATTGA.................................................. 19 0 1 7.00 7 7 0 0 0 0 0
..................................................AAATTGAGTCTAGTAGGGAGT....................................................................................... 21 1 1 7.00 7 4 3 0 0 0 0
..................................................AAATTGACTCTAGTATGGATT....................................................................................... 21 2 1 6.00 6 4 0 1 0 0 1
..................................................AAATTGACTCTAGTTGGGAGTC...................................................................................... 22 1 1 6.00 6 3 3 0 0 0 0
.....................................................TTGACTCTAGTAGGGAGT....................................................................................... 18 0 1 6.00 6 5 0 1 0 0 0
......................................................................................CTCCCTAACGGAGTCAGATCG................................................... 21 1 1 6.00 6 2 4 0 0 0 0
..................................................AAAATGACTCTAGTAGGGAGTC...................................................................................... 22 1 1 6.00 6 0 4 2 0 0 0
..................................................AAATTGACTCTAGTAGGTAGTTA..................................................................................... 23 3 1 6.00 6 5 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGGGTCT..................................................................................... 23 2 1 6.00 6 1 5 0 0 0 0
......................................................................................CACCCTAACGGAGTCAGATTG................................................... 21 1 1 6.00 6 1 5 0 0 0 0
..................................................AAATTGACTCTAGTAGGGTGTCA..................................................................................... 23 2 1 6.00 6 0 6 0 0 0 0
..................................................AAATTGACTCTAGTAGGTAGTCG..................................................................................... 23 2 1 6.00 6 4 2 0 0 0 0
..................................................AAATTGACTCTAGTAGGGCGTCT..................................................................................... 23 2 1 6.00 6 1 5 0 0 0 0
......................................................................................CTCTCTAACGGAGTCAGATTG................................................... 21 1 1 6.00 6 3 3 0 0 0 0
..................................................AAATTTACTCTAGTAGGTAGT....................................................................................... 21 2 1 6.00 6 6 0 0 0 0 0
......................................................................................CTCCCTAACGGAGTCGGATTG................................................... 21 1 1 6.00 6 2 4 0 0 0 0
...................................................AATTGACTCTAGTAGGGAGTCA..................................................................................... 22 1 1 6.00 6 4 1 0 1 0 0
..................................................AAATTGACTCTAGTAGGGCGTCA..................................................................................... 23 2 1 6.00 6 2 4 0 0 0 0
...................................................AATTGACTCTAGTAGTGAGT....................................................................................... 20 1 1 6.00 6 5 0 1 0 0 0
......................................................................................CTCCCTAACGGAGTCAGATTGC.................................................. 22 1 1 6.00 6 0 6 0 0 0 0
......................................................................................CTCCCTAACGGAGTCAGCTTGA.................................................. 22 1 1 6.00 6 0 6 0 0 0 0
..................................................AAATTGACTCTCGTAGGGAGTCA..................................................................................... 23 2 1 6.00 6 1 5 0 0 0 0
...................................................AATTGACTCTAGTAGGGAGTCT..................................................................................... 22 1 1 6.00 6 2 1 1 1 1 0
..................................................AAATTGACTCTAGTAGGGAGTGA..................................................................................... 23 2 1 6.00 6 2 3 0 1 0 0
......................................................................................CTCCCTAACGGAGTCACATTG................................................... 21 1 1 6.00 6 1 5 0 0 0 0
..................................................AAGTTGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 6.00 6 6 0 0 0 0 0
......................................................................................CTCCCTAACGGTGTCAGATTG................................................... 21 1 1 6.00 6 0 6 0 0 0 0
..................................................AAATTGACTCTAGTAGTGAGTCT..................................................................................... 23 2 1 6.00 6 4 2 0 0 0 0
..................................................AAATTTACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 6.00 6 5 1 0 0 0 0
..................................................AAATTGACTCTACTAGGGAGTCA..................................................................................... 23 2 1 6.00 6 2 3 1 0 0 0
..................................................AAATTGACTATAGTAGGGAGTCT..................................................................................... 23 2 1 6.00 6 5 0 1 0 0 0
..................................................AAATTGACTCTGGTAGGGAGTCA..................................................................................... 23 2 1 6.00 6 2 2 2 0 0 0
......................................................................................CTCCCTAACGGAGTCAGATTGT.................................................. 22 1 1 6.00 6 2 3 0 1 0 0
..................................................AGATTGACTCTAGTAGGGAGTCT..................................................................................... 23 2 1 5.00 5 0 1 1 0 3 0
......................................................................................CTCCCTAACGGAGTTAGATTG................................................... 21 1 1 5.00 5 4 0 0 1 0 0
..................................................AAATTGACTGTAGTAGGGAGT....................................................................................... 21 1 1 5.00 5 3 2 0 0 0 0
..................................................AAATTGACTCTCGTAGGGAG........................................................................................ 20 1 1 5.00 5 1 3 1 0 0 0
......................................................................................CTCCCTAACGGAGTCCGATTG................................................... 21 1 1 5.00 5 0 5 0 0 0 0
..................................................AAATTGACTCAAGTAGGGAGTC...................................................................................... 22 1 1 5.00 5 0 3 2 0 0 0
....................................................ATTGACTCTAGTAGGGAGTCT..................................................................................... 21 1 1 5.00 5 1 4 0 0 0 0
.................................................CAAATTGACTCTAGTAGGG.......................................................................................... 19 0 1 5.00 5 2 1 1 1 0 0
..................................................AAACTGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 5.00 5 4 1 0 0 0 0
......................................................................................CGCCCTAACGGAGTCAGATTGA.................................................. 22 1 1 5.00 5 0 5 0 0 0 0
..................................................AAATTGACACTAGTAGGGAGTC...................................................................................... 22 1 1 5.00 5 0 3 2 0 0 0
..................................................AAATGGACTCTAGGAGGGAGT....................................................................................... 21 2 1 5.00 5 0 5 0 0 0 0
..................................................AAATTGACTCTAGTAGGTT......................................................................................... 19 2 1 5.00 5 3 2 0 0 0 0
......................................................................................ATCCCTAACGGAGTCAGATTGA.................................................. 22 1 1 5.00 5 1 4 0 0 0 0
..................................................AAATTGACTCTAGTAGTGAGC....................................................................................... 21 2 1 5.00 5 2 3 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTTC..................................................................................... 23 1 1 5.00 5 1 3 0 0 1 0
..................................................AAATTGACTCTAGTGGGGAGTCA..................................................................................... 23 2 1 5.00 5 4 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGTGTCT..................................................................................... 23 2 1 5.00 5 1 4 0 0 0 0
..................................................AAATTGACTCTAGCAGGGAG........................................................................................ 20 1 1 5.00 5 0 5 0 0 0 0
..................................................AAATTGACTCTAGCAGGCAGTC...................................................................................... 22 2 1 5.00 5 0 3 2 0 0 0
......................................................................................CTGCCTAACGGAGTCAGATTG................................................... 21 1 1 5.00 5 5 0 0 0 0 0
..................................................AAATTGACGCTAGTAGGGAGTC...................................................................................... 22 1 1 5.00 5 0 5 0 0 0 0
...................................................AATTGACTATAGTAGGGAGT....................................................................................... 20 1 1 5.00 5 5 0 0 0 0 0
..................................................AAATTGAGTCTAGTAGGGAGTC...................................................................................... 22 1 1 5.00 5 0 5 0 0 0 0
..................................................AAATTGACTCTAGTCGGGAGTCT..................................................................................... 23 2 1 4.00 4 0 4 0 0 0 0
..................................................AATTTGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 4.00 4 2 2 0 0 0 0
..................................................AAATTGACTCTAGTAGGGATGC...................................................................................... 22 2 1 4.00 4 0 4 0 0 0 0
..................................................AAATTGACTCTATTAGGGAGTCT..................................................................................... 23 2 1 4.00 4 1 3 0 0 0 0
..................................................AAATTGGCTCTAGTAGGGAGTCA..................................................................................... 23 2 1 4.00 4 3 1 0 0 0 0
..................................................TAATTGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 4.00 4 2 2 0 0 0 0
..................................................AAATTGACTCTAGTAGGTAGTCT..................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0
..................................................AAATTGACTCTAGTAGCGAG........................................................................................ 20 1 1 4.00 4 0 4 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCGT.................................................................................... 24 1 1 4.00 4 2 1 1 0 0 0
..................................................AAATTGACTCTAGCAGCGAGTC...................................................................................... 22 2 1 4.00 4 0 4 0 0 0 0
..................................................AAATTTACTCTAGTAGGTAGTC...................................................................................... 22 2 1 4.00 4 3 1 0 0 0 0
..................................................AAAGTGACTCTAGCAGGGAGT....................................................................................... 21 2 1 4.00 4 0 4 0 0 0 0
..................................................AAAGTGACTCTAGTAGGGAGTCG..................................................................................... 23 2 1 4.00 4 0 3 0 1 0 0
......................................................................................CTCCCTAACGGTGTCAGATTGA.................................................. 22 1 1 4.00 4 0 4 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGACG..................................................................................... 23 2 1 4.00 4 2 0 2 0 0 0
..................................................AAATTGACTCTAGTAGGGCG........................................................................................ 20 1 1 4.00 4 0 4 0 0 0 0
......................................................................................CTTCCTAACGGAGTCAGATTG................................................... 21 1 1 4.00 4 2 1 1 0 0 0
..................................................AAATCGACTCTAGTAGGGAGTCA..................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0
....................................................ATTGACTCTAGTAGTGAGT....................................................................................... 19 1 1 4.00 4 4 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGCAGTCA..................................................................................... 23 2 1 4.00 4 2 2 0 0 0 0
..................................................AAATTGACTCTATTAGGG.......................................................................................... 18 1 1 4.00 4 3 1 0 0 0 0
..................................................AAATTGACTCTAGTATGGA......................................................................................... 19 1 1 4.00 4 3 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGAGT........................................................................................ 20 3 10 4.00 40 35 3 2 0 0 0
..................................................AAATTGACTATAGTAGGGA......................................................................................... 19 1 1 4.00 4 3 0 1 0 0 0
..................................................AAAGTGACTCTAGGAGGGAGT....................................................................................... 21 2 1 4.00 4 0 4 0 0 0 0
....................................................ATTGACTCTAGTAGGTAGT....................................................................................... 19 1 1 4.00 4 4 0 0 0 0 0

Anti-sense strand reads

AAGGGGTCGGTGGTTGGTTGGTTGGTTGGTTGGTGAAGGACCGCGTCAAGTTTAACTGAGATCATCCCTCAGGAAAATTGCTCTCTGAGGGATTGCCTCAGTCTAACTTAATGTTTCCTCGCTCTGTTGCTGATGCACCACCGGATTTTTCACAATCG

************************************.((((.....(((((((.((((((((..((((((((((((.....))).)))))))))..)))))))).)))))))....))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M058

embryo

 V055

head

 V106

head

 M044

female body
.......................................................................................................................................CACCATAGGATTTTTCACA.... 19 2 2 0.50 1 1 0 0 0
.....................................................................................................................................ACCACCCCCGGATTTTTCACAA... 22 3 2 0.50 1 1 0 0 0
.................................................GTTTGACTGAGGGCATCCCTC........................................................................................ 21 3 2 0.50 1 0 1 0 0
..GGGGTGGGTGGTTGGTTG.......................................................................................................................................... 18 1 6 0.50 3 0 0 3 0
.................................................................................................................TTTCCTCTCTCTTTTGCTGACG....................... 22 3 3 0.33 1 0 1 0 0
........GGTGGTTGGTTGGTTGGTT................................................................................................................................... 19 0 9 0.11 1 0 0 1 0
.......................................ACCGCGGCAAGTTTAATTGT................................................................................................... 20 3 11 0.09 1 1 0 0 0
.........................................................................................................................................CCACAGGATTTTTCACAAGA. 20 3 13 0.08 1 1 0 0 0
.........................TTGGTTGGTGACGGACGC................................................................................................................... 18 3 20 0.05 1 0 1 0 0
.....................................................................................TGAGGGATTACCGCATTC....................................................... 18 3 20 0.05 1 0 0 0 1
...............GGTTGGTTGGTTGGTTGG............................................................................................................................. 18 0 20 0.05 1 0 1 0 0
.TGGGGTGGGTGGTTGGTTG.......................................................................................................................................... 19 2 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13340:11127700-11127857 + dan_5 confident TTCCCCAGCCACCAACCAACCAACCAACCAAC----CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGGTGGCC-------TAA---AAAGTGTT---------------------------------------------------------AGC
droBip1 scf7180000396691:36395-36539 + CTTCCAC-------------CAACCCACCAAC----CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTAAGGGGTTGCC-------CAA---AAAGTGTT---------------------------------------------------------AGC
droKik1 scf7180000302634:767718-767869 + TGCCCAAATCGAGAGTGACCCGAGCA--ACGCC---ATGTTCCTGTCGGAGTTCAAATTGACTCTAGTAGGGAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGA-GACAACAGTG-AG-A-TTC---------CAG---AGAGTGTT---------------------------------------------------------AGG
droFic1 scf7180000454096:1242546-1242670 + AAC---------------------------------GACTTCCTGACGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACATCGAGGGAGCGGCTG---------CC-----AAGTGCT---------------------------------------------------------AGC
droEle1 scf7180000491104:1857450-1857571 + -------------------------------------ACTTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAA-GACATCGG-GGAGCAGCTG---------CCG---AAAGTGTT---------------------------------------------------------AGC
droRho1 scf7180000777910:14042-14168 - A----------------------------AAC----GACTTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGA-GACAACAA-GGAGCAGCTG---------CCA---AAAGTGTT---------------------------------------------------------AGC
droBia1 scf7180000302098:364492-364621 - CAG--------------------------AAC----TAAGTCCTGACGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACAACAAAGGAGCAACTG---------CCA---AAAGTGTT---------------------------------------------------------AGC
droTak1 scf7180000414441:35416-35558 - TTCCCTG-ACATAAG------------AGAAC----CAATTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAA-GACAACAAAGGGAAATCTT---------TAA---AAAGTGTT---------------------------------------------------------AGC
droEug1 scf7180000409759:55738-55869 + AGATGA----------------------TAAC----A-AATCCTGACGCTGTTCAAATTGACTCTAGTAGGGAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCAA--ACAACAAAGGAGCAGTTC---------TTA---AAAGTGTT---------------------------------------------------------ATC
dm3 chr3R:121070-121210 + dme-mir-929 Known_mirbase ATGCCCTGACATGGC------------GGAAC----C-AGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAACAGAGGAGCA-CTT---------AAA---AATGTGTT---------------------------------------------------------AGC
droSim2 3r:105583-105707 + dsi-mir-929 Known_mirbase C----------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA-CTT---------AAA---AAGGTGTT---------------------------------------------------------AGC
droSec2 scaffold_6:240429-240553 + dse_4 confident C----------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA-CTT---------AAA---AAGGTGTT---------------------------------------------------------AGC
droYak3 3R:481096-481226 + dya_11 confident GCA-------------------------AAAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGACCA-CTA---------AAAAAAAATGTGTT---------------------------------------------------------AGC
droEre2 scaffold_4770:471041-471165 + der_6 confident G----------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGTGCA-CTT---------AAA---AAGGTGTT---------------------------------------------------------AGC
dp5 2:24810778-24810938 - dps-mir-929 Known_mirbase CGG---------------------------------CAATTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCGAAAG--ACAAAGA---ACCGAAGTGTA-----------------------------GTTGCTAAGAATACATGAATGTGCCCCTAGC
droPer2 scaffold_6:111413-111544 - dpe_8 confident CGG---------------------------------GATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCAAAAG--ACAAAGA---ACCGAAGTGT----------------------------------------------------------AGC
droWil2 scf2_1100000004902:9825548-9825673 - dwi_10 confident -------------------------------------ACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCACGA---------CCCACCAAAGTGTT---------------------------------------------------------AGA
droVir3 scaffold_12822:1418797-1418939 + dvi-mir-929 Known_mirbase GCCAAGTGC--------------------GACGCGTGAATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAACGAGTAAAAATGTG---CCAAGTGAC---AAAGTGTT---------------------------------------------------------A--
droMoj3 scaffold_6540:34020278-34020446 + dmo_3169 TACGC------------------------TACG---AGTTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAACGAAGAAGCG-CGA---------GCA---CAAATGCA---AATAATGGTATACAGTGGAATAAAAAAT------TAATAAGTG-----------AAT
droGri2 scaffold_15074:2468144-2468285 - dgr_3 confident GCCCCCG-----------------------------AACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAACAATGCCCCA-GTG---------ATA---CAAGTGTTACAAATAATGAT---------------------------------------------AAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTCCCCAGCCACCAACCAACCAACCAACCAAC----CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGGTGGCC-------TAA---AAAGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................21148433.0048433611081034399564938113
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................22114519.00145195518048443511148687
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................2115341.005341362121684463246
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2313204.00320414328361082241
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2311174.001174817437391681
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................201963.009631750403162376
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................201830.0083030060119648
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................231604.00604110117759356
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................221593.005933100518242
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................191366.003660002572269
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................211340.003400001865257
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................191315.003151001310291
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................231297.002976019936155
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................191252.002524028359104
......................................................AAATTGACTCTAGTAGGGAGTTA.........................................................................................................................................................231245.002454008824129
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................181220.002201110107299
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................211191.0019102002632113
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................181155.0015500059195
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................211155.0015553085359
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................221117.00117000491355
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................23184.0084011122644
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................20183.0083380012033
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................21180.0080000232037
......................................................AAATTGACTCTAGTAGGGAGTTG.........................................................................................................................................................23173.0073100271530
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................21163.006383016036
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................22150.005001017131
..........................................................................................CTCCCTAACGGAGTCAGATTT.......................................................................................................................21148.00480003144
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................20143.004316002205
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................22128.002811121211
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................20121.00210001614
......................................................AAATTGACTCTAGTAGGGAGTAT.........................................................................................................................................................23115.00150005010
......................................................AAATTGACTCTAGTAGGGAGTG..........................................................................................................................................................22114.0014000716
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................19114.0014000806
......................................................AAATTGACTCTAGTAGGGAGTGT.........................................................................................................................................................23113.0013000931
......................................................AAATTGACTCTAGTAGGGAT............................................................................................................................................................20113.0013000526
......................................................AAATTGACTCTAGTAGGGAGTAA.........................................................................................................................................................23112.0012100317
..........................................................................................CTCCCTAACGGAGTCAGATTC.......................................................................................................................21111.0011000407
.....................................................CAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................23110.0010030115
..........................................................................................CTCCCTAACGGAGTCAGATTA.......................................................................................................................2119.009000009
.......................................................AATTGACTCTAGTAGGGA.............................................................................................................................................................1818.008300401
..........................................................................................CTCCCTAACGGAGTCAGATTGAA.....................................................................................................................2318.008210302
..............................................................................................CTAACGGAGTCAGATTGA......................................................................................................................1818.008000206
......................................................AAATTGACTCTAGTAGG...............................................................................................................................................................1718.008000800
......................................................AAATTGACTCTAGTAGGGAA............................................................................................................................................................2017.007100510
..........................................................................................CTCCCTAACGGAGTCAGATTGAT.....................................................................................................................2317.007000403
.............................................................................................CCTAACGGAGTCAGATTGA......................................................................................................................1917.007000007
.........................................................TTGACTCTAGTAGGGAGT...........................................................................................................................................................1816.006000015
.......................................................AATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2216.006100104
..........................................................................................CTCCCTAACGGAGTCAGATTGC......................................................................................................................2216.006000600
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2216.006110112
......................................................AAATTGACTCTAGTAGGGAGTGA.........................................................................................................................................................2316.006100302
..........................................................................................CTCCCTAACGGAGTCAGATTGT......................................................................................................................2216.006100302
........................................................ATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2115.005000401
.....................................................CAAATTGACTCTAGTAGGG..............................................................................................................................................................1915.005100112
......................................................AAATTGACTCTAGTAGGTT.............................................................................................................................................................1915.005000203
......................................................AAATTGACTCTAGTAGGAGT............................................................................................................................................................20104.00400003235
droBip1
CTTCCAC-------------CAACCCACCAAC----CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTAAGGGGTTGCC-------CAA---AAAGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotal
No Reads
droKik1
TGCCCAAATCGAGAGTGACCCGAGCA--ACGCC---ATGTTCCTGTCGGAGTTCAAATTGACTCTAGTAGGGAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGA-GACAACAGTG-AG-A-TTC---------CAG---AGAGTGTT---------------------------------------------------------AGGSizeHit CountTotal NormTotal
No Reads
droFic1
AAC---------------------------------GACTTCCTGACGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACATCGAGGGAGCGGCTG---------CC-----AAGTGCT---------------------------------------------------------AGCSizeHit CountTotal NormTotal
No Reads
droEle1
-------------------------------------ACTTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAA-GACATCGG-GGAGCAGCTG---------CCG---AAAGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotal
No Reads
droRho1
A----------------------------AAC----GACTTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGA-GACAACAA-GGAGCAGCTG---------CCA---AAAGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotal
No Reads
droBia1
CAG--------------------------AAC----TAAGTCCTGACGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACAACAAAGGAGCAACTG---------CCA---AAAGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotal
No Reads
droTak1
TTCCCTG-ACATAAG------------AGAAC----CAATTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAA-GACAACAAAGGGAAATCTT---------TAA---AAAGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotal
No Reads
droEug1
AGATGA----------------------TAAC----A-AATCCTGACGCTGTTCAAATTGACTCTAGTAGGGAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCAA--ACAACAAAGGAGCAGTTC---------TTA---AAAGTGTT---------------------------------------------------------ATCSizeHit CountTotal NormTotal
No Reads
dm3
ATGCCCTGACATGGC------------GGAAC----C-AGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAACAGAGGAGCA-CTT---------AAA---AATGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................211991581.0099158100001000000000120400541800100322218867854765226190366626129591144813984182430831216000110000000000000000001020410000010018103316002274000000000000313412421125234341166112101500000010007914293813934503952360042343214000001845110294317110249465249406809767598110276233391164157128128211759157472900100527622000002483100340073120442102646109411751611694911033003010044435914716613524131327340525901194416293816247881922421871059547778841721830181112802811075959722371441693371036284827723772743125132028924296182542842541923835660532113738971304851274101405416952184618410136920671031472212548150863631728866556451088914266177153616532694112555556616351374852962724842979174126706021800
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................221142586.0014258600005000000100300220661000321586312941258143813701627131525121621611277947371012000000000000000000000001102950010000004124036001081921200001110300112210350372313752029000000000050820021321183615153610181240000080005088295805631599740116703251371333821155643723200011122228151710038054500000354800200187470348408404142083002182000111400192614854215143156114482936311545359688091822198891602402444156884521750464342411165523158442481312252017255351461328079494510648120672831081488855850185651853916661676258661467046059246149729516039856147321602163101129532560121899252075139812933911689103200
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................21143028.004302800007320001023030023000130113618195394476401000000101000011110003712130000000000000000032101012000000431817901759221411012141376101560374547424248161701110222371258340000001000201000000011000000000005000406366017712734252622583212001041529000001163100000010000000000000000002382000100105000000004842016620075954526426171202382160284791227424512124858442021616294732107062402150835618848421192209815011033451533021132401319163282651310613201105407149634032400
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................20125804.002580400002000000000011010110103017361061381759511301051301314112300000000000000000000000000001200000000015011308000083100000001010062073121501652502322016000000000011100224151950402000002000004362168028644201762171281543931524054141000005283614000002102200000007001000600418514399032171101720030000342012617996921183151861532051951771020201260411294111712717837315326981061148118910321631178377225024211261118492329609127884641021472107863155103780741421290921951931734860210820
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................19116051.00160510000000000000000000000000000000000000000100000100100000000000000000000000000000000000000000000000000000000000000000157040000010000000000000000001010020000100000000000317301337310135009231360110000030000000000000000000000000001213000000010000000001114610103196015110000090010000000000000000000009012962334437150093012000118240780000315035227253311068911850307978810514013019000
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................20114181.0014181000001000000000100000000052703218121000000000021010010000000010000000000000000000000000000000000030000000000000000000002603010000000000000000020000110003410010000010000072606278716361838116000011192221000103000000000000008135212910000100010000000031544054711413901558121448114212531101117128052021220180532134857307343367486123412903315271078015418897481914162067731382893342420061052557474771333473142534531871240
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................22113456.001345600001810003032000011000000101622335451510000000210000001200000000000000000000000006524300002001212105351410518664369994424015003214142113706264290672811984920617100000000003010001000200000000000000003112245402083419356825366810121853000003130010000000000000000000000011295100120002000000002245000301073546012420200265131001002030012000000000014031524595803511300000061310000000101010000001722110000000
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................22112165.0012165000020000000000600000000040186585861683142201100010001011100000000000000000000000000000001000000000020160100202310030000000001310702411001410000000000100000000015000000000000100826009141220119966717711874070000061010000001000000000020000200912001200030000000081052521004102023580112132111210001001010000000000127410256219314344016291609010011154524251000045121098636151177034056383679518618320129541500
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................23111505.00115050000000001000000000000600600000000012100413062210132000000000000000000000000000000000000000001310000019000000000000006810003150192192000000000003120002504141000000000000080531428031822470462193176371567720000001300001000020530000005000000000111331160043000100013300100922341487000931960691001118916000010051740002300211036003015196115179656145144501224513195214922103114140101010213107811889829694250004010
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2319059.0090590000000000000000000002200000000000022212127170001242000000000000000000000000000010000000001300502100035000000010000002900001110801012000000000050300252261380000000000000003082520203302772364116226124726006007375130000504000000530000001005134158004140004000000002162090109340003585127600005721000000031110100328112116313001109386513344583849518172031417210260418120003382104222126141011098811130885358208000
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................2115210.0052100000000000000000000000000100000000000000103000201010000000000000000000000000000000000000000000000000000000000000000000010101000020000000000010000001040000000000000007100400180601615170000002300000000020000000000000000001730001000000000000000238331315550141030410431400000006140000350010000063730905127911431270142111096002212716290166400100306128211043290445131610001000
...........................................................................................TCCCTAACGGAGTCAGATTGAG.....................................................................................................................2214885.004885000050000100003102100000001014104770000010100000000000000000110000000000000000000001500000001112601152160365121000001015170234114290371152240927490000000000100000000010000000000000001071030841098854113198019324000002261020000000000000000003001003730000023070000000094420126505010644503013010115890110001103000001030000002617250374246281312910166000011106589149330150915303302810213243620391916100300
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................1913675.003675000000000000000000000000010721296193600000000011000101000000000000000000000000000000000000000000000110001200000001000001910103210012100000000000000000000173002000000000002215703091012822337252677442800000434101000001030000000000100000015103000110010000000014703190300842017250000931110000013510000130010100591715312616121601722165250112598838062164190701916201187481163149304515021000
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................2113049.00304900000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000120200100000000000000000000001000900000000000000059022124030207000000200001000000000000000000000101623000000000000000012001061007340937001027210100100103010021204140200324101681911711470713803623411363215113691033212128042111230133859143467873562030000
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................2112784.00278400000000000000010000001002171224356200010001013130003011000000000000000000000000100000000100000003010000000030000000000611000000001300000000000000202211180002000000000002765019209196726491151540005005021100001000000000100000031223330002000000000000241710100553102004470200145330020001832601001322011300895297712681162183361217000028268796102329140802381031471444030364277321711308100
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................1912377.00237700000000000000010000000000320000000000000001000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000200000000000000012013207122000200000020010000100000000000000001001151000000000000000053000110040009001051200000002010000000000000144197456781440107501000021844631331360182226319270353066112961113331430014000
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................2112103.00210300001000000000000020000000001041300000000000000000000000003500000000000000000000001000000000240210010010310000000000008238906010423113420250000000000000000001030000000000000005980055004434047154112211000001250000000000000000000000000000200000000010000000044046231022739097000080610000000000000010100000040014416514718109105000000290141200010000300002004154121627002000
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................1811822.001822000000000000000000000000000611511001000100000100000000000000000000000000000000000000000000000000100000000000000000000215901100100101000000000000000001000100000000000000028167016108610152137606290000011102000000000000000000000000014200010000000000006203241000214021300011910110000101000000000000170615910815618901436240200000242405441001000802000001528542951216102000
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................2211419.0014190000000000000000000000000000000000000000001020000210000000000000000000000000000000000000000000000000060000000000000030000000030030000000000000001000016000000000000000311860101122193901584210000066201000010000000011000000000034700000001000000009406910003150111400008120000000701301001600040210704595038630613201300103116257101210016015021059236424141618002000
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................2111397.0013970000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000001020000000010000000000000000000060000000000000003540201192201590000006001000010000000000000000000021000010000000040001000400002110248000012200000203050000240001000021331221611613001103025002066995105120011000221404002723826613911106000
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................2311168.00116800000000000000001000000000000000000000000000210001100000001000000000000000000000000000000000000010000010000000000000700001000200100000000001010012210220000000000060104405004141130605000000234010000002000000030000000020162116000000010000000030330218000211705100000327200010050500000303100411120460605275073301301105154274719290140603011415001912716617317006100
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................2011009.00100900000000000000000000000000010014121200000000000000000000001020000000000000000000000000000000000050200002000000001000005101083405112000000000000000000003000000000000000670401151401701411830000037000000000000000000000000000000000000000000000002102240002649052000011100000000010000000000000020096881181340235030000908120000000030000000518560325000000
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................231960.00960000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000001000000000000000000003000000000000000151820100031803012015000000163020000200000000000000000000051001200000000000020003000001201200002100000000010000000012010000127181535033204010014110220001100020020100872814517111516000000
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................231942.009420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000020010000000000000000010140002000000000002518013004516190250500000008202000000000000000000000000001330000000000000000960111000071003000001000000000000000000000000000004164437801720100401012801421001301000000000011187112854000000
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................201729.00729000010000000000000000000000100000000000000000000000000000000000000000000000000001000000000000230000001000100000000012790905230711511000000000000000000000000000000000000105147033126261150511107000000330000000000000000000000000000000000000000000000010013000000002000000000000000100000000000000000151128290000010000102000000000000000000500001000000
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................221599.0059900000000000000000000000100000000000000000000100001100000000000000000000000000000000000000000000000000000000000000000100001000404100000000000000000010400010000000000011660902353921110022600000140000000100000000000000000000210000000000000300066014000113021000050001000020310001000000000102202722270350030000154252100011000200003001680531440002000
....................................................TCAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................231595.00595000000000000000000000000000002510100000000000000000000000000000000000000000001000000000000000000000000000000000000000102000100000000000000000000000011000000000000000100130413500200000003000000000000000000000000000000000000000000000002100100012400200101311000000000100000000000005012514142303220200005312213000030181501232014267249181211001000
.....................................................CAAATTGACTCTAGTAGGGAG............................................................................................................................................................211469.00469000010000000000000000000000321612110000000000001000000000000000000000000000000000300000000000010000000000000000000000400000110000000000000000000000000000000000000000081040410313191211426300000200000000000000000000000000000000000000000000000210020000130200000010000000101000000000000003022016182602100000003146010000001000010027931233000000
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................201459.0045900000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000020000000000010100000000000000000000000000000300000000000000013260211141341404260000004221000000000000000000000000401030000000000010000302100610000001400001310000000609010100000000008031433302602235000000101414000010003000000021733000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGAG.....................................................................................................................231436.00436000020000100000000000000000000000000000000000000000000000000000000000000000000001000000000040060110331800100100100000010000020105200000000000000000000200000000000000097010005130100401700000028000000000000000000000000000010000000101000000008401600015502300108400000000000000010000000010021453240018450101007177020000206000010011710212000000
..........................................................................................CTCCCTAACGGAGTCAGATTGAA.....................................................................................................................231416.004160000100001000000000000000000000000000000000000000000000000000000000000000000000010000000000500601000025000000002010001840201220211280000000000000000000000000000000000008264042007160162702800000030000000000000000000000000000000000100002000000003000100002201000000000010000000000000000000010032240000010000000000000000000000000000000001000
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................181393.003930000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104010000000000000000000000000000000000000000000003240542025001227000000000010000000000000000000000000001000000000000100000011000000220020000000000000000000000000000000002626425900200100001024000000000000000039140002002000
......................................................AAATTGACTCTAGTAGGGAGTATC........................................................................................................................................................241327.003270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000191136000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AAATTGACTCTAGTAGGGAT............................................................................................................................................................201272.0027200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000003000000000000000000000100000000000000051280220001010210000000000000000000000000000000000000000000000000011000001101101300100001400000000010000000000000000011353002310300001003000000001000000033431021001000
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................191271.0027100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300101010001000000000000000000000000000000000000054401001051101260000006000000000000000000000000000001000000000000000000001200000201600000600000003020000000002000040857122001120100003467110000101021010024761332011000
.............................................................................................CCTAACGGAGTCAGATTGAG.....................................................................................................................201250.002500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000002103001202010000000040000000000000000000000000000000000000000000000016600100001300000008100000000000000000000000000135372925015940000000137000000102001032001312401000000
..........................................................................................CTCCCTAACGGAGTCAGATTGC......................................................................................................................221238.0023800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000300000000000000971000100010676000000000000000000000000000000000000481703100000000010000001000000000000000000000000000000000000000000000001000000000200000001100000000000000000000000000000010000000000000000000000000000000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGT......................................................................................................................221232.0023200001000000000000000000000000000000000000000000000000000000000000000000000000000000000000004004030002600000000000000120001000031520000000000000000000000000000000000002925020004502061132000001000000000000000000000000000000000001000000000000100010002010000000020000000000000000000000004006451302100100011201000000102100040001211000000000
.....................................................CAAATTGACTCTAGTAGGG..............................................................................................................................................................191222.00222000000000000000000000000000325000100000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000000000000000446025401602222120000000000000000000000000000000000000000000010000000010000000001010000010000000000000000000000000000637800100000000010100000000000010036365002000000
......................................................AAATTGACTCTAGTAGGGAGTTA.........................................................................................................................................................231212.00212000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000201000000000000000000000000000000000000000535030023040206000000700000000000000000000000000000000000000000000000100021000040120000000000000000000000000100000008455000000000030650100000000010000863131312000000
.....................................................CAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................231198.001980000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000001000000000000000000000000000000000000000003202310722032100000000000000000000000010000000000010000000000000000043001000113011000002000000000000000000000000300581110014410001003165110101008001030044621120002000
...........................................................................................TCCCTAACGGAGTCAGATTGAGT....................................................................................................................231186.001860000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000001000104000100000000000000000000000000000000000000002000001000100000030000000000000000000000001010000000000000000000011013110220003000010000200000000000000000000070056320111001000127801000030220100150013721212011100
......................................................AAATTGACTCTAGTAGGGAA............................................................................................................................................................201156.0015600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037702001110001400000020000000000000000000000000000110000000000000000000000000001010000000000000010000000000000000003824400000100003121100000000000000032400101000000
......................................................AAATTGACTCTAGTAGGGAGTG..........................................................................................................................................................221155.001550000000000000000000000000000000000000000100000002100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000003140300012151446000000000000000000000000000000000000000000000000000000210110001040100000510000000003000010000000001005466001101001041161500010000200000000620101000000
......................................................AAATTGACTCTAGTAGGGC.............................................................................................................................................................191150.00150000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000003200000000010000000000000000000000000000000000000310120000004200000002000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000011451100110100001010000000000010000048300001000000
......................................................AAATTGACTCTAGTAGGAGT............................................................................................................................................................204139.505580000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100220452200300000010000000000000000000000000000421000000000000000000002000002012000122000000000000000000000000200142011240010010000013100000140121251300352603913202214007000
.....................................................CAAATTGACTCTAGTAGGGA.............................................................................................................................................................201139.00139000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000321016500110046020000000000000000000000000000000000000000000000000000000000000000010010000000100000000000000000000001203600010000000020000000000011102043761202000000
..........................................................................................CTCCCTAACGGAGTCAGATTT.......................................................................................................................211134.001340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000010000000000000000000000030430000000000000000000000000000000000005001001000010000000030000000000000000000000000000000000000000000000000075100031101000002600000000000000100000000010011810350100000000103000000000000000000300000000000
......................................................AAATTGACTCTAGTAGGGG.............................................................................................................................................................191129.0012900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000100215000000000000000000000000000000000000010000000000000000000000000005001000000000000000000000000000000000171117500010000000041000000000000000024000001001000
......................................................AAATTGACTCTAGTAGGGAGTAT.........................................................................................................................................................231120.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004180301330409017100000111000000000000000000000000000000000000000000120020002000001000000000000000000000000000000000000331301000010002000000000000000000021430121000000
.........................................................TTGACTCTAGTAGGGAGT...........................................................................................................................................................181119.001190000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000030000000000000001000110212100000000030001000000000000000000000000010000000000000000000000000000002100010000000000000001100000000000532600100100000140000000100003010053755643000000
.......................................................AATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................221119.001190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001010030078016040500000029000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000004360000010000002210000000000100000500000000000
.....................................................CAAATTGACTCTAGTAGG...............................................................................................................................................................18196.009600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200100000000000000000000000000000000000000000000004604000000021020000000000000000000000000000000000000000000000000000000000000002010000001000000000000000000000000000397100000000000001000000000000000000210000000000
......................................................AAATTGACTCTAGTAGGGGT............................................................................................................................................................20191.00910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000113600000000000001000000000001000007000000000000
......................................................AAATTGACTCTAGTAGGGAGTAA.........................................................................................................................................................23189.0089000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000540000411040602100000012000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000031210000000000200000000000000000001600100000000
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................22189.00890000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000020000000000000004903007305050400000017000000000000000000000000000002000000000000000000200000000000000000000000000010000100001000000000330101000000101101000000001002000300020001000
droSim2
C----------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA-CTT---------AAA---AAGGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................2111764.001764699351951013113210883200000
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................201791.00791651305658710102102000
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................221744.007442025175001201346938100000
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................211369.0036915402274168000001300001
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................181224.0022419326012010100000000
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................19192.00923820233921121100000
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................23173.00735006000023273000000
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................20162.00623710122100000000000
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................21161.0061505210000000300000
...............................C----C-AGTCCTGGTGAAGCTC................................................................................................................................................................................18153.0053462500000000000000
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................18142.0042420000000000000000
......................................................AAATTGACTCTAGTAGGGAT............................................................................................................................................................20141.0041401000000000000000
..........................................................................................CTCCCTAACGGAGTCAGAT.........................................................................................................................19138.0038271002800000000000
......................................................AAATTGACTCTAGTAGGGAC............................................................................................................................................................20134.0034340000000000000000
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................21134.0034322000000000000000
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................21133.0033230100401200101000
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................22130.003090122900120400000
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................23129.0029001500202210700000
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................19125.0025240010000000000000
..........................................................................................CTCCCTAACGGAGTCAGA..........................................................................................................................18124.0024000002400000000000
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................20123.0023151030200000200000
......................................................AAATTGACTCTAGTAGGGC.............................................................................................................................................................19119.0019181000000000000000
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................19117.0017131000300000000000
.............................AAC----C-AGTCCTGGTGAAGCTC................................................................................................................................................................................20116.0016160000000000000000
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................21111.001130020000004200000
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................20111.0011110000000000000000
.....................................................CAAATTGACTCTAGTAGGG..............................................................................................................................................................19110.001081000100000000000
..............................................................................................CTAACGGAGTCAGATTGA......................................................................................................................18110.001090000000000100000
......................................................AAATTGACTCTAGTAGGC..............................................................................................................................................................1819.00990000000000000000
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................1919.00990000000000000000
...........................................................................................TCCCTAACGGAGTCAGATTGAG.....................................................................................................................2219.00922010100010200000
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................2119.00990000000000000000
...........................................................................................TCCCTAACGGAGTCAGATTGAGT....................................................................................................................2317.00730310000000000000
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................2317.00700010100004100000
......................................................AAATTGACTCTAGTAGGGAA............................................................................................................................................................2016.00660000000000000000
C----------------------------AAC----C-AGTCCTGGTGAAGCTC................................................................................................................................................................................2116.00650000100000000000
.....................................................CAAATTGACTCTAGTAGGGAG............................................................................................................................................................2115.00530000200000000000
.....................................................CAAATTGACTCTAGTAGGGA.............................................................................................................................................................2015.00500000500000000000
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................2214.00400020000200000000
.....................................................CAAATTGACTCTAGTAGG...............................................................................................................................................................1814.00430000000100000000
......................................................AAATTGACTCTAGTAGGGTTG...........................................................................................................................................................2114.00440000000000000000
......................................................AAATTGACTCTAGTAGGA..............................................................................................................................................................1814.00440000000000000000
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................2014.00410000300000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGAA.....................................................................................................................2313.00320000000100000000
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................2313.00300020000001000000
...........................................................................................TCCCTAACGGAGTCAGATTGAA.....................................................................................................................2213.00310000000020000000
......................................................AAATTGACTCTAGTAGGGCT............................................................................................................................................................2013.00330000000000000000
.............................................................................................CCTAACGGAGTCAGATTGA......................................................................................................................1913.00321000000000000000
.........................................................TTGACTCTAGTAGGGAGTC..........................................................................................................................................................1913.00330000000000000000
........................................................ATTGACTCTAGTAGGGAG............................................................................................................................................................1813.00330000000000000000
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................2313.00320000000001000000
...........................................................................................TCCCTAACGGAGTCAGATTGAGC....................................................................................................................2312.00210000100000000000
..........................................................TGACTCTAGTAGGGAGTC..........................................................................................................................................................1812.00210000000001000000
...........................................................................................TCCCTAACGGAGTCAGATT........................................................................................................................1912.00210000100000000000
......................................................AAATTGACTCTAGTAGGGG.............................................................................................................................................................1912.00220000000000000000
......................................................AAATTGACTCTAGTAGGGATA...........................................................................................................................................................2112.00220000000000000000
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2212.00200000000101000000
............................................................................................CCCTAACGGAGTCAGATTGA......................................................................................................................2012.00220000000000000000
..............................AC----C-AGTCCTGGTGAAGCTC................................................................................................................................................................................1912.00220000000000000000
......................................................AAATTGACTCTAGTAGGAT.............................................................................................................................................................1922.00440000000000000000
...........................................................................................TCCCTAACGGAGTCAGATTGAAA....................................................................................................................2312.00200200000000000000
.......................................................AATTGACTCTAGTAGGGA.............................................................................................................................................................1812.00210000100000000000
..............................................................................................CTAACGGAGTCAGATTGAA.....................................................................................................................1912.00220000000000000000
...........................................................................................TCCCTAACGGAGTCAGAT.........................................................................................................................1812.00210000100000000000
.......................................................AATTGACTCTAGTAGGGT.............................................................................................................................................................1811.00110000000000000000
.......................................................AATTGACTCTAGTAGGGAT............................................................................................................................................................1911.00110000000000000000
........................................................ATTGACTCTAGTAGGGAGG...........................................................................................................................................................1911.00110000000000000000
............................................................................................CCCTAACGGAGTCAGATTG.......................................................................................................................1911.00100000100000000000
...........................................................................................TCCCTAACGGAGTCAGATTGAGA....................................................................................................................2311.00101000000000000000
............................................................................................CCCTAACGGAGTCAGATTGG......................................................................................................................2011.00110000000000000000
.......................................................AATTGACTCTAGTAGGGAGG...........................................................................................................................................................2011.00110000000000000000
......................................................AAATTGACTCTAGTAGGGAGTG..........................................................................................................................................................2211.00100000000000100000
.....................................................CAAATTGACTCTAGTAGGGAT............................................................................................................................................................2111.00110000000000000000
..........................................................................................CTCCCTAACGGAGTCAGAC.........................................................................................................................1911.00110000000000000000
......................................................AAATTGACTCTAGTAGGGAAA...........................................................................................................................................................2111.00110000000000000000
........................................................ATTGACTCTAGTAGGGAGC...........................................................................................................................................................1911.00110000000000000000
....................................................TCAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................2311.00100000000000100000
.....................................................CAAATTGACTCTAGTAGGGAC............................................................................................................................................................2111.00110000000000000000
......................................................AAATTGACTCTAGTAGGGAGTAA.........................................................................................................................................................2311.00101000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGAGT....................................................................................................................2411.00100000000000100000
......................................................AAATTGACTCTAGTAGGTC.............................................................................................................................................................1911.00110000000000000000
...........................................................GACTCTAGTAGGGAGT...........................................................................................................................................................1611.00100000000001000000
.......................................................AATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................2211.00100000100000000000
.......................................................AATTGACTCTAGTAGGGAGA...........................................................................................................................................................2011.00110000000000000000
......................................................AAATTGACTCTAGTAGGGAAG...........................................................................................................................................................2111.00110000000000000000
............................................................ACTCTAGTAGGGAGT...........................................................................................................................................................1511.00100000000001000000
......................................................AAATTGACTCTAGTAGGGATG...........................................................................................................................................................2111.00110000000000000000
.............................................................................................CCTAACGGAGTCAGATTG.......................................................................................................................1811.00110000000000000000
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................2211.00100000010000000000
.......................................................AATTGACTCTAGTAGGGG.............................................................................................................................................................1811.00101000000000000000
...........................................................................................TCCCTAACGGAGTCAGATTGT......................................................................................................................2111.00110000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTT.......................................................................................................................2111.00100000000000100000
............................................................................................CCCTAACGGAGTCAGATTGAGC....................................................................................................................2211.00100100000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGT......................................................................................................................2211.00110000000000000000
.......................................................AATTGACTCTAGTAGGGAGC...........................................................................................................................................................2011.00110000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGAG.....................................................................................................................2311.00100000000000100000
......................................................AAATTGACTCTAGTAGGGAGTCTC........................................................................................................................................................2411.00100000000000001000
.........................................................TTGACTCTAGTAGGGAGG...........................................................................................................................................................1811.00110000000000000000
droSec2
C----------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCA-CTT---------AAA---AAGGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................211112939.0011293914612438375596600
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................22113992.0013992112119042428448
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................1917088.00708814177039
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................2115632.005632145401205327
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................2015145.00514514469774585
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2311437.00143725151447814
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2311319.001319101101431056
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................201776.00776209813645
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................181478.00478001477
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................211442.00442218132281
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................221314.0031442717266
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................181281.00281206273
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................191274.002742521246
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................191210.002108305167
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................231186.0018642157104
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................211180.001800206154
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................221145.001452226358
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................21198.009851488
......................................................AAATTGACTCTAGTAGGGC.............................................................................................................................................................19188.008800088
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................20187.008763276
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................21181.008116074
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................23177.0077710951
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................22176.0076417253
......................................................AAATTGACTCTAGTAGGGGT............................................................................................................................................................20160.006000060
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................23155.0055110341
....................................................TCAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................23149.004904936
...........................................................................................TCCCTAACGGAGTCAGATTGAG.....................................................................................................................22145.0045121329
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................21137.003735128
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................20125.002560019
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................22121.002111217
.........................................................TTGACTCTAGTAGGGAGT...........................................................................................................................................................18119.001900217
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................19117.001741012
......................................................AAATTGACTCTAGTAGGGTT............................................................................................................................................................20117.001700017
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................20116.001630103
.....................................................CAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................23116.001620410
.......................................................AATTGACTCTAGTAGGGT.............................................................................................................................................................18115.001500015
......................................................AAATTGACTCTAGTAGGGG.............................................................................................................................................................19114.001400014
......................................................AAATTGACTCTAGTAGGAGT............................................................................................................................................................201012.201220123107
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................22112.00120165
......................................................AAATTGACTCTAGTAGGGAGTTA.........................................................................................................................................................23112.00121227
.......................................................AATTGACTCTAGTAGGGAGA...........................................................................................................................................................20111.001101010
......................................................AAATTGACTCTAGTAGGGAT............................................................................................................................................................20111.001101010
......................................................AAATTGACTCTAGTAGGTT.............................................................................................................................................................1929.001800018
......................................................AAATTGACTCTAGTAGGGAA............................................................................................................................................................2019.0090108
..........................................................................................CTCCCTAACGGAGTCAGATTGAA.....................................................................................................................2318.0080017
..........................................................................................CTCCCTAACGGAGTCAGATTGT......................................................................................................................2218.0080107
......................................................AAATTGACTCTAGTAGGGAGTCTA........................................................................................................................................................2418.0080008
.............................................................................................CCTAACGGAGTCAGATTG.......................................................................................................................1817.0072005
.......................................................AATTGACTCTAGTAGGGAGC...........................................................................................................................................................2017.0070106
.......................................................AATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................2217.0071204
......................................................AAATTGACTCTAGTAGGGTA............................................................................................................................................................2017.0070007
.......................................................AATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2217.0070025
..........................................................................................CTCCCTAACGGAGTCAGATTA.......................................................................................................................2116.0060006
.....................................................CAAATTGACTCTAGTAGGGT.............................................................................................................................................................2016.0060006
......................................................AAATTGACTCTAGTAGGAT.............................................................................................................................................................1915.0050005
.....................................................CAAATTGACTCTAGTAGGGAG............................................................................................................................................................2115.0050104
..........................................................................................CTCCCTAACGGAGTCAGATTGAG.....................................................................................................................2315.0050023
......................................................AAATTGACTCTAGTAGGA..............................................................................................................................................................1815.0050005
..............................................................................................CTAACGGAGTCAGATTGA......................................................................................................................1814.0040004
..........................................................................................CTCCCTAACGGAGTCAGATTGAT.....................................................................................................................2314.0040004
.............................................................................................CCTAACGGAGTCAGATTGA......................................................................................................................1914.0040013
...........................................................................................TCCCTAACGGAGTCAGATTGAGT....................................................................................................................2313.0030012
.....................................................CAAATTGACTCTAGTAGGGA.............................................................................................................................................................2013.0031101
......................................................AAATTGACTCTAGTAGGGAGAT..........................................................................................................................................................2213.0031002
..........................................................................................CTCCCTAACGGAGTCAGATTT.......................................................................................................................2113.0030003
..........................................................................................CTCCCTAACGGAGTCAGATTGC......................................................................................................................2213.0030012
droYak3
GCA-------------------------AAAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGACCA-CTA---------AAAAAAAATGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................2219518.009518272171193264164957124560000
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................2118797.0087971031275635291325426718830000
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................2114517.004517271803111536275280000
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2311529.0015292571093601049420000
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................231858.0085842610010140543350000
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................221639.0063911614619540420010
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................181389.00389804209021300000
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................201375.00375491121270192300000
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................191183.0018391005011490000
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................211161.0016119443438260000
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................231161.0016106535256930000
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................231149.001490610349990000
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................211125.001257085022650000
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................21180.008002465123300000
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................20177.007712200223200000
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................19171.007131011024320000
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................18151.00518000103300000
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................20148.00481132271670000
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................19146.00461130142610000
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................23137.0037034062220000
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................21135.0035804211730000
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................22131.0031002071930000
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................20128.00281111041100000
...............................C----C-AGTCCTGGTGAAGCTC................................................................................................................................................................................18127.0027250200000000
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................22127.0027026111070000
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................20126.002646106900000
.....................................................CAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................23126.0026011921300000
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................22123.0023015141200000
..........................................................................................CTCCCTAACGGAGTCAGATTT.......................................................................................................................21118.0018000010800000
...........................................................................................TCCCTAACGGAGTCAGATTGAG.....................................................................................................................22117.001700304810010
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................21116.001610026700000
.............................AAC----C-AGTCCTGGTGAAGCTC................................................................................................................................................................................20115.001560701100000
....................................................TCAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................23115.001500201750000
......................................................AAATTGACTCTAGTAGGGAGTG..........................................................................................................................................................22113.001300028300000
..........................................................................................CTCCCTAACGGAGTCAGATTGC......................................................................................................................22112.0012000001200000
.......................................................AATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................22111.001100101900000
.......................................................AATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................22111.001108001200000
.........................................................................................ACTCCCTAACGGAGTCAGATTGA......................................................................................................................2319.00900231300000
..........................................................................................CTCCCTAACGGAGTCAGATTGT......................................................................................................................2219.00900000900000
......................................................AAATTGACTCTAGTAGGGAGTTA.........................................................................................................................................................2318.00800003500000
..........................................................................................CTCCCTAACGGAGTCAGATTGAA.....................................................................................................................2316.00601111200000
..........................................................................................CTCCCTAACGGAGTCAGAT.........................................................................................................................1916.00650100000000
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................1915.00511001200000
......................................................AAATTGACTCTAGTAGG...............................................................................................................................................................1715.00500000500000
......................................................AAATTGACTCTAGTAGGGAGTTG.........................................................................................................................................................2315.00510001210000
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2215.00501300010000
..........................................................................................CTCCCTAACGGAGTCAGATTC.......................................................................................................................2115.00500000500000
.........................................................................................ACTCCCTAACGGAGTCAGATTG.......................................................................................................................2215.00504000100000
......................................................AAATTGACTCTAGTAGGGC.............................................................................................................................................................1915.00520001200000
......................................................AAATTGACTCTAGTAGGGAGTAT.........................................................................................................................................................2314.00400000310000
..........................................................................................CTCCCTAACGGAGTCAGATTGAT.....................................................................................................................2314.00400003100000
......................................................AAATTGACTCTAGTAGGGG.............................................................................................................................................................1914.00410000300000
......................................................AAATTGACTCTAGTAGGGAGCT..........................................................................................................................................................2214.00400000400000
.............................................................................................CCTAACGGAGTCAGATTG.......................................................................................................................1814.00400001300000
......................................................AAATTGACTCTAGTAGGGAGTGT.........................................................................................................................................................2314.00401000300000
..............................................................................................CTAACGGAGTCAGATTGA......................................................................................................................1814.00420001100000
..............................AC----C-AGTCCTGGTGAAGCTC................................................................................................................................................................................1914.00410300000000
...........................................................................................TCCCTAACGGAGTCAGATTGAGT....................................................................................................................2313.00310000200000
........................................................ATTGACTCTAGTAGGGAG............................................................................................................................................................1813.00310100100000
......................................................AAATTGACTCTAGTAGGTT.............................................................................................................................................................1913.00300000300000
droEre2
G----------------------------AAC----C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGTGCA-CTT---------AAA---AAGGTGTT---------------------------------------------------------AGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................21155442.00554421928431354237051445570
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................22117077.001707724820626932331964117330
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................2116750.00675018411427714349880
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2312769.0027694724851922419920
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................2011565.001565313234115911370
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................2211530.0015301931343611580
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2311528.0015285116264202179600
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................1911427.001427004503413480
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................181814.008144036067680
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................201522.00522101171804130
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................231361.00361160640652160
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................191233.002332000182130
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................211231.00231233480131440
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................211135.00135414033840
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................231130.001304320212890
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................211122.001221129110890
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................191116.001163013520750
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................20190.00902101811490
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................22182.008201603720
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................22170.0070001228480
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................22165.006520604530
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................18254.00108001011060
....................................................TCAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................23149.004900216400
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................21136.003641921190
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................23135.0035302012180
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................21127.002710211220
..........................................................................................CTCCCTAACGGAGTCAGATTT.......................................................................................................................21125.002510400200
......................................................AAATTGACTCTAGTAGGAGT............................................................................................................................................................20224.004810305390
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................20123.002320000210
.............................................................................................CCTAACGGAGTCAGATTGA......................................................................................................................19121.002100300180
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................19121.002120204130
...........................................................................................TCCCTAACGGAGTCAGATTGAG.....................................................................................................................22120.00201092080
..............................................................................................CTAACGGAGTCAGATTGA......................................................................................................................18120.002000000200
..........................................................................................CTCCCTAACGGAGTCAGATTGAA.....................................................................................................................23118.00182090070
......................................................AAATTGACTCTAGTAGGGAGTAT.........................................................................................................................................................23115.001500104100
......................................................AAATTGACTCTAGTAGGGAGTTA.........................................................................................................................................................23115.00150040290
..........................................................................................CTCCCTAACGGAGTCAGATTGC......................................................................................................................22115.001500150000
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................20115.001521100110
......................................................AAATTGACTCTAGTAGGGAGTAA.........................................................................................................................................................23114.001400001130
.........................................................TTGACTCTAGTAGGGAGT...........................................................................................................................................................18113.001300000130
.....................................................CAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................23112.00122400150
......................................................AAATTGACTCTAGTAGGGAT............................................................................................................................................................20112.00121010190
.......................................................AATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................22110.00105000050
..........................................................................................CTCCCTAACGGAGTCAGATTGAT.....................................................................................................................2319.0090050040
......................................................AAATTGACTCTAGTAGGGAGTCAA........................................................................................................................................................2418.0085000030
.............................................................................................CCTAACGGAGTCAGATTG.......................................................................................................................1818.0080010070
........................................................ATTGACTCTAGTAGGGAG............................................................................................................................................................1818.0081010150
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2217.0072000230
......................................................AAATTGACTCTAGTAGGGAGTG..........................................................................................................................................................2217.0070030040
......................................................AAATTGACTCTAGTAGGGAGTCAC........................................................................................................................................................2416.0060010230
.......................................................AATTGACTCTAGTAGGGT.............................................................................................................................................................1816.0061000050
......................................................AAATTGACTCTAGTAGGGC.............................................................................................................................................................1916.0060000060
......................................................AAATTGACTCTAGTAGGGAGTCTA........................................................................................................................................................2415.0050000050
......................................................AAATTGACTCTAGTAGGGAGTCGA........................................................................................................................................................2415.0050020030
............................................................................................CCCTAACGGAGTCAGATTGA......................................................................................................................2015.0050120020
......................................................AAATTGACTCTAGTAGGGTT............................................................................................................................................................2015.0050010040
......................................................AAATTGACTCTAGTAGGGTA............................................................................................................................................................2015.0050000050
............................................................................................CCCTAACGGAGTCAGATTG.......................................................................................................................1915.0051000040
......................................................AAATTGACTCTAGTAGGGG.............................................................................................................................................................1915.0050000050
........................................................ATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2114.0040200110
.........................................................TTGACTCTAGTAGGGAGTC..........................................................................................................................................................1914.0040110020
...........................................................................................TCCCTAACGGAGTCAGATTGAAA....................................................................................................................2314.0040000040
......................................................AAATTGACTCTAGTAGGGAGTTG.........................................................................................................................................................2314.0040000130
..........................................................................................CTCCCTAACGGAGTCAGATTGAG.....................................................................................................................2314.0040030010
dp5
CGG---------------------------------CAATTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCGAAAG--ACAAAGA---ACCGAAGTGTA-----------------------------GTTGCTAAGAATACATGAATGTGCCCCTAGCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................2117708.0077081231179704887436313240217
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................2216817.00681704234207144914467290417
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................2112256.002256145612116168576000
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................201968.0096808510731071764126
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................231846.0084607350604658032005
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................231785.0078501004231660137004
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................221739.0073904126146731002
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................211216.0021604532221431000
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................211197.0019701611095174000
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................231119.001190532172585000
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................201114.0011402521244922000
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................19182.00820131364710011
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................20169.0069043000260000
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................21154.005409026351001
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................19132.003207131191000
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................20130.003001128090000
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................21127.002700366120000
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................18126.002602120200001
.....................................................CAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................23126.002601713140000
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................22123.002302114060000
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................23123.002302001182000
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................22121.002102021160000
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................23117.00170222092000
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................19117.001703111011000
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................22116.00160242080000
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................21115.001500000150000
.......................................................AATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................22113.001301000030000
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................20112.001201101000000
..........................................................................................CTCCCTAACGGAGTCAGATTGAA.....................................................................................................................23111.00110501140000
..........................................................................................CTCCCTAACGGAGTCAGATTGT......................................................................................................................22110.00100200080000
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2219.0090700020000
........................................................ATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................2117.0070011050000
......................................................AAATTGACTCTAGTAGGGAGTTA.........................................................................................................................................................2316.0060102030000
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................1916.0060000051000
........................................................ATTGACTCTAGTAGGGAG............................................................................................................................................................1815.0050101030000
......................................................AAATTGACTCTAGTAGGGAGTG..........................................................................................................................................................2215.0050000230000
......................................................AAATTGACTCTAGTAGGGAT............................................................................................................................................................2014.0040000040000
.............................................................................................CCTAACGGAGTCAGATTG.......................................................................................................................1814.0040000040000
.......................................................AATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................2214.0040000031000
......................................................AAATTGACTCTAGTAGGGAA............................................................................................................................................................2014.0040001030000
.........................................................TTGACTCTAGTAGGGAGT...........................................................................................................................................................1814.0040002011000
....................................................TCAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................2414.0040002020000
..........................................................................................CTCCCTAACGGAGTCAGATTGC......................................................................................................................2214.0040000040000
.....................................................CAAATTGACTCTAGTAGGGAG............................................................................................................................................................2113.0030100020000
.....................................................CAAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2413.0030002010000
......................................................AAATTGACTCTAGTAGGGAGTCCT........................................................................................................................................................2413.0030001011000
...........................................................................................TCCCTAACGGAGTCAGATTGAA.....................................................................................................................2213.0030000111000
.............................................................................................CCTAACGGAGTCAGATTGA......................................................................................................................1913.0030000030000
..........................................................................................CTCCCTAACGGAGTCAGAT.........................................................................................................................1913.0030012000000
.......................................................AATTGACTCTAGTAGGGA.............................................................................................................................................................1813.0030000030000
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................1813.0030000030000
.........................................................TTGACTCTAGTAGGGAGTC..........................................................................................................................................................1912.0020200000000
......................................................AAATTGACTCTAGTAGGGAGTAA.........................................................................................................................................................2312.0020100010000
......................................................AAATTGACTCTAGTAGGGAC............................................................................................................................................................2012.0020002000000
......................................................AAATTGACTCTAGTAGGTT.............................................................................................................................................................1922.0040000040000
......................................................AAATTGACTCTAGTAGGGATC...........................................................................................................................................................2112.0020002000000
.....................................................CAAATTGACTCTAGTAGGGAGC...........................................................................................................................................................2212.0020011000000
............................................................................................CCCTAACGGAGTCAGATTG.......................................................................................................................1912.0020200000000
droPer2
CGG---------------------------------GATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCAAAAG--ACAAAGA---ACCGAAGTGT----------------------------------------------------------AGCSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................21118343.0018343553216391365247632
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................22114511.001451156454414590201223
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................2113906.00390607541277250941
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2311722.00172201194781053171
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2311689.0016890811478112567
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................2011010.0010101111312508177
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................221487.0048701513241470
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................211220.00220070711375
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................231196.001960104512426
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................201179.0017902051711
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................191114.00114036195333
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................201112.00112061285027
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................21167.00670008509
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................22147.004700092810
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................19146.004600023410
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................21143.004320019220
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................20142.004209014190
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................21137.00371006300
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................23135.00350203264
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................21132.00320005225
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................22131.00310019201
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................23127.002701051110
........................................................ATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................21120.00200007130
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................18120.00201007120
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................22116.0016020446
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................20115.00150202110
......................................................AAATTGACTCTAGTAGGGAGTTA.........................................................................................................................................................23111.0011000092
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................19111.0011000344
..........................................................................................CTCCCTAACGGAGTCAGATTGT......................................................................................................................2219.009000450
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................1919.009110250
......................................................AAATTGACTCTAGTAGGGAGTG..........................................................................................................................................................2219.009000270
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................1818.008100160
........................................................ATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2118.008000170
.......................................................AATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................2217.007000070
..........................................................................................CTCCCTAACGGAGTCAGATTGAT.....................................................................................................................2315.005000140
......................................................AAATTGACTCTAGTAGGGAGTCTC........................................................................................................................................................2415.005000140
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2215.005010211
......................................................AAATTGACTCTAGTAGGGAA............................................................................................................................................................2015.005010022
......................................................AAATTGACTCTAGTAGGGAGTAT.........................................................................................................................................................2315.005000050
......................................................AAATTGACTCTAGTAGGGAGTAA.........................................................................................................................................................2314.004000121
..........................................................................................CTCCCTAACGGAGTCAGATTC.......................................................................................................................2114.004000130
..........................................................................................CTCCCTAACGGAGTCAGATTT.......................................................................................................................2114.004000130
......................................................AAATTGACTCTAGTAGGGAGAA..........................................................................................................................................................2213.003000120
droWil2
-------------------------------------ACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCACGA---------CCCACCAAAGTGTT---------------------------------------------------------AGASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................21197883.00978834871623418839285424
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................22118888.0018888139161614764510329
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................2112505.002505931529892162
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2311953.001953655547811057
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2311464.001464227472481140
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................201843.00843214247248485
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................201452.004522171150372
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................231365.003655262136277
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................211207.00207192614166
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................211191.00191224023142
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................231184.00184221057113
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................221145.0014503712123
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................191128.0012821515105
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................22188.008851902935
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................19186.008635211443
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................21183.008321202346
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................21177.0077000275
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................21168.00682703335
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................22166.00660001254
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................20161.00612210335
....................................................TCAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................23160.00601001346
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................19147.00470011432
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................22132.0032013325
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................23127.0027015417
...........................................................................................TCCCTAACGGAGTCAGATTGAA.....................................................................................................................22122.0022220810
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................20118.001841067
......................................................AAATTGACTCTAGTAGGGAC............................................................................................................................................................20116.0016160000
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................18116.0016110113
.............................................................................................CCTAACGGAGTCAGATTGA......................................................................................................................19115.0015101112
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................20115.001565004
..............................................................................................CTAACGGAGTCAGATTGA......................................................................................................................18113.001350017
..........................................................................................CTCCCTAACGGAGTCAGATTGAA.....................................................................................................................23112.001231026
..........................................................................................CTCCCTAACGGAGTCAGAT.........................................................................................................................19111.0011101000
.........................................................TTGACTCTAGTAGGGAGT...........................................................................................................................................................18110.001002125
......................................................AAATTGACTCTAGTAGGGAGTAA.........................................................................................................................................................2319.00901008
......................................................AAATTGACTCTAGTAGGGAGTCTA........................................................................................................................................................2419.00900054
......................................................AAATTGACTCTAGTAGGGAGTTA.........................................................................................................................................................2318.00802006
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2217.00702032
..........................................................................................CTCCCTAACGGAGTCAGATTGAT.....................................................................................................................2317.00740003
......................................................AAATTGACTCTAGTAGGGAGTTG.........................................................................................................................................................2316.00630102
.....................................................CAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................2315.00500023
.......................................................AATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................2215.00501013
......................................................AAATTGACTCTAGTAGGGAGTAT.........................................................................................................................................................2315.00500005
........................................................ATTGACTCTAGTAGGGAG............................................................................................................................................................1814.00430010
......................................................AAATTGACTCTAGTAGGGAGTGT.........................................................................................................................................................2314.00421001
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................1814.00400004
............................................................................................CCCTAACGGAGTCAGATTGA......................................................................................................................2014.00401003
.......................................................AATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2214.00402002
.......................................................AATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................2214.00403001
......................................................AAATTGACTCTAGTAGGGAGTCAA........................................................................................................................................................2414.00402011
..........................................................................................CTCCCTAACGGAGTCAGATTGT......................................................................................................................2214.00421001
........................................................ATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2113.00301002
...........................................................................................TCCCTAACGGAGTCAGATTGAAT....................................................................................................................2313.00330000
......................................................AAATTGACTCTAGTAGGGAT............................................................................................................................................................2013.00300111
...........................................................................................TCCCTAACGGAGTCAGATTGAAA....................................................................................................................2313.00310011
......................................................AAATTGACTCTAGTAGGGAGTG..........................................................................................................................................................2213.00300111
...........................................................................................TCCCTAACGGAGTCAGATTGG......................................................................................................................2112.00220000
...........................................................................................TCCCTAACGGAGTCAGATT........................................................................................................................1912.00210001
..........................................................................................CTCCCTAACGGAGTCAGATTA.......................................................................................................................2112.00200002
..........................................................................................CTCCCTAACGGAGTCAGA..........................................................................................................................1812.00202000
......................................................AAATTGACTCTAGTAGGGAGTCTG........................................................................................................................................................2412.00200011
..........................................................................................CTCCCTAACGGAGTCAGATTC.......................................................................................................................2112.00200002
......................................................AAATTGACTCTAGTAGGGAGTCCT........................................................................................................................................................2412.00200002
.........................................................TTGACTCTAGTAGGGAGTC..........................................................................................................................................................1912.00202000
droVir3
GCCAAGTGC--------------------GACGCGTGAATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAACGAGTAAAAATGTG---CCAAGTGAC---AAAGTGTT---------------------------------------------------------A--SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................21121160.0021160812426013739076391617227001931518321757637308248161002702325485216208600002120001000000000000108956380845209000000135141000001
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................22113334.00133342353731750486391036110001481759423859473423149851278931255359104703800016830000000000100000003187487651600000003100000000
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................2117094.0070945303793020000000052231714733057424648117671001156180100010200000000000000000001828694200000001000000000
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2313781.003781027715317001410005682891813301972431482661612521224112010000073000000000000000000001053344001000000000000000
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2311766.001766007030411100000192134751708676017924100113551200000004000000000000000000074772700000000000000000
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................2011607.001607915178413020700009561336974450566521111811270200001600000000000000000111693101003000110000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................221486.0048603431000000000035236297333058320000030110000000000000000000000000000145000000000000000000
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................231418.00418004601940030000392614282521843470001110133100800001210000000000000000000351900000000000000000
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................231355.003550070003001000035281533302302569000001010010000020000000000000000000176400000000000000000
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................201308.00308043111101302000050436205600000200200000004000000000000000000049811300100000000000000
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................181243.0024324527000000000009444530430000000000100000100000000000000000201126200000000000000000
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................191225.002250782000000000095354416800000000000000001000000000000000000051183900000000000000000
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................211168.00168024930003030000867125701320000000200000000060000000000000000000213700000000000000000
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................221115.0011500400011010000126213740917000000000010000000000000000000000000029800000000000000000
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................201109.00109033900000000000151154087000000000000000000000000000000000000034100000000000000000
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................211108.001080100180002010000010010000000000000010000010000000000000000000166600000000000000000
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................231107.0010700120000000000015449770711000000000000000000000000000000000000027400000000000000000
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................19191.0091012000041100000021200020000000000000000100000000000000000000522200000000000000000
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................21182.0082023000000100003405200260000000000000000000000000000000000001381500000000000000000
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................21170.0070022000010000006415530106000001200000000000000000000000000000119100000001000000000
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................21162.0062418000001010000000000000000000000000000000000000000000000000134300000000000000000
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................19152.005203800107020000020010102000000100000000010000000000000000000014900000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................20148.0048011240000000000000022004300000000100000000000000000000000000001000000000000000000
.....................................................CAAATTGACTCTAGTAGGGAG............................................................................................................................................................21138.003804200000000000610242031000000000010000000000000000000000000010100000000100000000
......................................................AAATTGACTCTAGTAGGGAA............................................................................................................................................................20136.003614200000000000100311030000000000000000000000000000000000000016400000000000000000
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................22134.003400200000000000230210030000000000000000000000000000000000010111800000000000000000
......................................................AAATTGACTCTAGTAGGGAGTTA.........................................................................................................................................................23132.003200210000000000231102032000000000000000000000000000000000000013200000000000000000
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................20132.003205113000000000011370100000000000000000000000000000000000000000000000000000000000
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................22131.00310011000000000073210300300000010000000000000000000000000000005400000000000000000
......................................................AAATTGACTCTAGTAGGGAGTG..........................................................................................................................................................22121.00210000000100000011012103600000000000000000000000000000000000003200000000000000000
......................................................AAATTGACTCTAGTAGGGAGTCTA........................................................................................................................................................24120.00200010000000000001133203300000000000000000000000000000000000002100000000000000000
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................22120.00200040000000000021011002400010000001000000000000000000000000003000000000000000000
.....................................................CAAATTGACTCTAGTAGGG..............................................................................................................................................................19120.00200410000000000020010100000000000000000000000000000000000000007300000001000000000
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................18218.5037014000000000000112001002000000000000000000000000000000000000016000000000000000000
.......................................................AATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................22118.00180000030000000000000001300000130001000002000000000000000000002200000000000000000
......................................................AAATTGACTCTAGTAGGGAGTTG.........................................................................................................................................................23118.00180310010000000010110001300000000000000000000000000000000000005100000000000000000
......................................................AAATTGACTCTAGTAGGGAC............................................................................................................................................................20116.00163900000000000000000000000000000000000000000000000000000000004000000000000000000
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................19115.00150050000000000020000001000000000000000000000000000000000000007000000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGAA.....................................................................................................................23114.00140060000000000011010100100000000000000000000000000000000000003000000000000000000
......................................................AAATTGACTCTAGTAGGGAGTCTG........................................................................................................................................................24113.00130010000000000010021101100000000000000000000000000000000000004100000000000000000
.............................................................................................CCTAACGGAGTCAGATTG.......................................................................................................................18113.00130010000000000003011002200000000000000000000000000000000000003000000000000000000
.....................................................CAAATTGACTCTAGTAGG...............................................................................................................................................................18111.00110610000000000000000000200000000000000000000000000000000000002000000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGAT.....................................................................................................................23111.00110000000000000033010001200000000000000000000000000000000000001000000000000000000
.......................................................AATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................22110.00100060000000000000100001100000000000000000000000000000000000001000000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTT.......................................................................................................................2119.0090000000000000010001101100000000000000000000000000000000000013000000000000000000
......................................................AAATTGACTCTAGTAGGGAT............................................................................................................................................................2019.0090100000000000020001000100000000000000000000000000000000000003100000000000000000
.....................................................CAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................2319.0090011000000000020000101000000000000000000000000000000000000003000000000000000000
......................................................AAATTGACTCTAGTAGGA..............................................................................................................................................................1818.0080320000000000000000000100000000000000000000000000000000000002000000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTA.......................................................................................................................2118.0080000000000000001000001000000000000000000000000000000000000006000000000000000000
........................................................ATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................2117.0070000000100000000100101300000000000000000000000000000000000000000000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGT......................................................................................................................2217.0070100000000000000011002000000000000000000000000000000000000001100000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTGC......................................................................................................................2217.0070001000000000000101001000000000000000000000000000000000000003000000000000000000
.........................................................TTGACTCTAGTAGGGAGTC..........................................................................................................................................................1917.0070121000000000000000001000000000000000000000000000000000000002000000000000000000
..........................................................................................CTCCCTAACGGAGTCAGAT.........................................................................................................................1917.0071110000000000010000000000000000000000000000000000000000000001000000002000000000
......................................................AAATTGACTCTAGTAGGGAAA...........................................................................................................................................................2117.0070200000000000000000101100000000000000000000000000000000000002000000000000000000
......................................................AAATTGACTCTAGTAGGGAGTCAA........................................................................................................................................................2416.0060001000000000020010100100000000000000000000000000000000000000000000000000000000
.....................................................CAAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2416.0060020000000000000110001000000000000000000000000000000000000001000000000000000000
........................................................ATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2116.0060000000000000010300000000000000001000001000000000000000000000000000000000000000
..........................................................................................CTCCCTAACGGAGTCAGATTC.......................................................................................................................2116.0060000000000000002000000000000000000000000000000000000000000004000000000000000000
......................................................AAATTGACTCTAGTAGGGAGTGT.........................................................................................................................................................2316.0060000000000000000100000300000000000000000000000000000000000002000000000000000000
......................................................AAATTGACTCTAGTAGGC..............................................................................................................................................................1816.0060400000000000000000000000000000000000001000000000000000000001000000000000000000
......................................................AAATTGACTCTAGTAGGGAGTCCT........................................................................................................................................................2415.0050000000000000020000001100000010000000000000000000000000000000000000000000000000
...........................................................................................TCCCTAACGGAGTCAGATT........................................................................................................................1915.0050130000000000000010000000000000000000000000000000000000000000000000000000000000
.....................................................CAAATTGACTCTAGTAGGGA.............................................................................................................................................................2015.0050000000000000001011000000000000000000000000000000000000000002000000000000000000
......................................................AAATTGACTCTAGTAGGGG.............................................................................................................................................................1915.0050100000000000000000000000000000000000000000000000000000000003100000000000000000
......................................................AAATTGACTCTAGTAGGGAGTCCA........................................................................................................................................................2415.0050000000000000000001200100000010000000000000000000000000000000000000000000000000
.....................................................CAAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................2415.0050110000000000001110000000000000000000000000000000000000000000000000000000000000
........................................................ATTGACTCTAGTAGGGAG............................................................................................................................................................1815.0050040000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................AAATTGACTCTAGTAGGGAGTCTC........................................................................................................................................................2414.0040000000000000000000100000000010101000000000000000000000000000000000000000000000
......................................................AAATTGACTCTAGTAGGGAGTAA.........................................................................................................................................................2314.0040000000000000001101100000000000000000000000000000000000000000000000000000000000
droMoj3
TACGC------------------------TACG---AGTTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAACGAAGAAGCG-CGA---------GCA---CAAATGCA---AATAATGGTATACAGTGGAATAAAAAAT------TAATAAGTG-----------AATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................21117995.0017995242347425877363495063
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................22112606.0012606350227322964771483840
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................2117028.007028425528013708089
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2311765.001765999453979124101
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................201755.0075564119636919106
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................231515.00515242172293717
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................231252.002527461779211
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................221238.0023821037751293
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................221190.00190463478671
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................211141.00141134536731
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................231120.0012091346907
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................211116.00116011722715
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................201112.00112420333502
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................211109.001094121132221
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................191104.001041113039023
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................20189.00891501540217
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................20163.0063701027190
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................20156.0056200151902
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................23156.005640182815
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................19146.004660121837
.....................................................CAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................23145.00452135331
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................22143.004301142314
......................................................AAATTGACTCTAGTAGGGAGG...........................................................................................................................................................21139.003901112412
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................18132.00326091520
..........................................................................................CTCCCTAACGGAGTCAGATTGT......................................................................................................................22126.00261091411
......................................................AAATTGACTCTAGTAGGGAGTTA.........................................................................................................................................................23124.00240051513
.........................................................................................ACTCCCTAACGGAGTCAGATTGA......................................................................................................................23124.00241301820
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................19124.00240031308
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................22123.00230051440
..........................................................................................CTCCCTAACGGAGTCAGATTT.......................................................................................................................21119.00190015400
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................21118.0018105912
........................................................ATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................21114.0014007610
.........................................................................................ACTCCCTAACGGAGTCAGATTG.......................................................................................................................22114.0014903200
.........................................................TTGACTCTAGTAGGGAGTC..........................................................................................................................................................19112.0012203070
.......................................................AATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................22112.0012301620
......................................................AAATTGACTCTAGTAGGGAGTTG.........................................................................................................................................................23112.0012105600
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................22112.0012800310
..........................................................................................CTCCCTAACGGAGTCAGATTGAA.....................................................................................................................23111.0011502310
........................................................ATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................21111.0011006401
..........................................................................................CTCCCTAACGGAGTCAGATTA.......................................................................................................................21110.0010006400
..........................................................................................CTCCCTAACGGAGTCAGATTGAT.....................................................................................................................23110.0010004600
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................1919.009601200
......................................................AAATTGACTCTAGTAGGT..............................................................................................................................................................1817.007004300
.........................................................TTGACTCTAGTAGGGAGT...........................................................................................................................................................1816.006101112
......................................................AAATTGACTCTAGTAGGGAT............................................................................................................................................................2016.006002301
......................................................AAATTGACTCTAGTAGGGAGTCTA........................................................................................................................................................2416.006101400
......................................................AAATTGACTCTAGTAGGGAGTG..........................................................................................................................................................2215.005010310
......................................................AAATTGACTCTAGTAGGGAGTGT.........................................................................................................................................................2315.005005000
.....................................................CAAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2415.005101030
..........................................................................................CTCCCTAACGGAGTCAGAT.........................................................................................................................1915.005100130
...........................................................................................TCCCTAACGGAGTCAGATT........................................................................................................................1914.004002200
......................................................AAATTGACTCTAGTAGGGAA............................................................................................................................................................2014.004101101
......................................................AAATTGACTCTAGTAGGGAGGA..........................................................................................................................................................2214.004001120
............................................................................................CCCTAACGGAGTCAGATTG.......................................................................................................................1914.004201100
..........................................................................................CTCCCTAACGGAGTCAGATTC.......................................................................................................................2114.004100300
.......................................................AATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2214.004301000
droGri2
GCCCCCG-----------------------------AACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAACAATGCCCCA-GTG---------ATA---CAAGTGTTACAAATAATGAT---------------------------------------------AAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
......................................................AAATTGACTCTAGTAGGGAGT...........................................................................................................................................................2113522.0035222163306
......................................................AAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................221739.00739264475
......................................................AAATTGACTCTAGTAGGGAG............................................................................................................................................................201108.001085058
......................................................AAATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................23169.00693633
.......................................................AATTGACTCTAGTAGGGAGT...........................................................................................................................................................20163.00632043
.......................................................AATTGACTCTAGTAGGGAGTC..........................................................................................................................................................21137.0037334
......................................................AAATTGACTCTAGTAGGGA.............................................................................................................................................................19119.0019415
..........................................................................................CTCCCTAACGGAGTCAGATTG.......................................................................................................................21119.0019163
......................................................AAATTGACTCTAGTAGGGAGTCC.........................................................................................................................................................23119.0019127
......................................................AAATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................23116.001697
.....................................................CAAATTGACTCTAGTAGGGAGT...........................................................................................................................................................22115.0015114
..........................................................................................CTCCCTAACGGAGTCAGATTGA......................................................................................................................22112.0012111
........................................................ATTGACTCTAGTAGGGAGT...........................................................................................................................................................19110.001037
......................................................AAATTGACTCTAGTAGGGAGTT..........................................................................................................................................................2218.00817
.......................................................AATTGACTCTAGTAGGGAG............................................................................................................................................................1917.00743
......................................................AAATTGACTCTAGTAGGGAGTTT.........................................................................................................................................................2315.00532
......................................................AAATTGACTCTAGTAGGGT.............................................................................................................................................................1914.00413
......................................................AAATTGACTCTAGTAGGGAGC...........................................................................................................................................................2114.00404
......................................................AAATTGACTCTAGTAGGG..............................................................................................................................................................1813.00330
........................................................ATTGACTCTAGTAGGGAGTC..........................................................................................................................................................2013.00321
.....................................................CAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................2313.00321
..........................................................................................CTCCCTAACGGAGTCAGATT........................................................................................................................2012.00220
.........................................................TTGACTCTAGTAGGGAGTC..........................................................................................................................................................1912.00211
......................................................AAATTGACTCTAGTAGGGAGTA..........................................................................................................................................................2212.00211
...........................................................................................TCCCTAACGGAGTCAGATTG.......................................................................................................................2012.00211
......................................................AAATTGACTCTAGTAGGGAGTCG.........................................................................................................................................................2312.00220
...........................................................................................TCCCTAACGGAGTCAGATTGA......................................................................................................................2112.00211
......................................................AAATTGACTCTAGTAGGGAA............................................................................................................................................................2012.00202
.........................................................TTGACTCTAGTAGGGAGT...........................................................................................................................................................1812.00211
......................................................AAATTGACTCTAGTAGGGAGA...........................................................................................................................................................2111.00101
.......................................................AATTGACTCTAGTAGGGAGTCCT........................................................................................................................................................2311.00110
....................................................TCAAATTGACTCTAGTAGGGAGTC..........................................................................................................................................................2411.00101
..........................................................................................CTCCCTAACGGAGTCAGATTGC......................................................................................................................2211.00110
...........................................................................................TCCCTAACGGAGTCAGATTGAAA....................................................................................................................2311.00110
..........................................................................................CTCCCTAACGGAGTCAGA..........................................................................................................................1811.00110
......................................................AAATTGACTCTAGTAGGGAGTCCA........................................................................................................................................................2411.00110
........................................................ATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2111.00110
...........................................................................................TCCCTAACGGAGTCAGATTGAG.....................................................................................................................2211.00101
.........................................................TTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2011.00110
.......................................................AATTGACTCTAGTAGGGAGTCA.........................................................................................................................................................2211.00110
..........................................................................................CTCCCTAACGGAGTCAGATTGAG.....................................................................................................................2311.00101
.....................................................CAAATTGACTCTAGTAGGGA.............................................................................................................................................................2011.00110
.......................................................AATTGACTCTAGTAGGGAGTCT.........................................................................................................................................................2211.00110

Generated: 10/20/2015 at 07:46 PM