dan_487

CDS [Dana\GF14872-cds]; exon [dana_GLEANR_15636:7]; exon [dana_GLEANR_15636:8]; CDS [Dana\GF14872-cds]; intron [Dana\GF14872-in]

##################################################--------------------------------------------------------------------------------################################################## GACATTCCGAACATCAACATACCCAACCTGATGGACTTGGCCTCGAAAAGGTTCGTATCCTGCCGTATCCAGAAATTGAAGAAATCCCTCTAACCTCAAGCTGACCCTCCCATTCAATTTACTGAAACAGCAACACCACGGAGACGAGCACCAGCTCTGTGGTCATCAAGTCCGTCATAA ************************************************...................(((((((((((........((............))........)))))))).)))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V106 head	M044 female body	V055 head	V039 embryo
..............CAACATACCCAACCTGATG...................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0
................................................................................................................................AGCAACACCACGGAGACGAG................................	20	0	1	1.00	1	0	0	1	0	0
...............AACATACCCAACCTGATGGACT...............................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
........................................................................................................................ACTGAAACAGCAACACCACGGA......................................	22	0	1	1.00	1	0	1	0	0	0
..............CAACATACCCAACCTGATGGA.................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
................................................AGGTTCGTATCCTGCCGA..................................................................................................................	18	1	1	1.00	1	0	0	1	0	0
................ACATACCCAACCTGATGGACTTGGCCTC........................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
............ATCAACATACCCAACCTGATGGACT...............................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
..............CAACATACCCAACCTGATGGAC................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
......CCGAACATCAACATACCCAACCTGATG...................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
..................................................GTTCGTATCCTACCGGAGCCA.............................................................................................................	21	3	1	1.00	1	0	1	0	0	0
...........................................CGCACAGGTTCGTATCCTGC.....................................................................................................................	20	2	3	0.67	2	2	0	0	0	0
........................................CCACGAGAAGGTTCGAATCCT.......................................................................................................................	21	3	2	0.50	1	0	0	0	1	0
..................................................GTTCGTATCCTACCGGAT................................................................................................................	18	2	9	0.44	4	0	4	0	0	0
............................................GCACAGGTTCGTATCCTGC.....................................................................................................................	19	2	3	0.33	1	1	0	0	0	0
..................................................GTTCGTATCCTACCGACTCCA.............................................................................................................	21	3	4	0.25	1	0	1	0	0	0
..................................................GTTCGTATCCTACCGGCTCCA.............................................................................................................	21	3	9	0.22	2	0	2	0	0	0
..............................................................................................................CCTTCAATTTACTGAACC....................................................	18	2	5	0.20	1	1	0	0	0	0
...................................................................................................................................AACACCAAGGAGACGAGA...............................	18	2	9	0.11	1	0	0	0	0	1
................................................AGGTTCGTATCCTGCCGGCT................................................................................................................	20	2	9	0.11	1	1	0	0	0	0
.................................................GGTTCGTATCCTACCGGAT................................................................................................................	19	2	9	0.11	1	0	1	0	0	0
..................................................GTTCGTATCCTACCGTCT................................................................................................................	18	2	13	0.08	1	0	1	0	0	0
............................................................................................................................AAACAGCAACACCCCGGAC.....................................	19	2	13	0.08	1	1	0	0	0	0
.................................................GGTTCGTATCCTGCTGTCG................................................................................................................	19	3	13	0.08	1	0	0	1	0	0
...................................................TTCGTATCCTACCGGCTCCA.............................................................................................................	20	3	14	0.07	1	0	1	0	0	0
...................................................................................................................GATGTACTGAAACACCAACA.............................................	20	3	15	0.07	1	1	0	0	0	0
..........................................................................................................................TCGAAAAGCAACACCACGGA......................................	20	3	16	0.06	1	1	0	0	0	0
................................................................................................CAAGCTGAGCCTTCCATGC.................................................................	19	3	19	0.05	1	0	0	0	0	1
................................................AGGTTCGAATCCTGCTGTC.................................................................................................................	19	3	20	0.05	1	0	0	1	0	0

CTGTAAGGCTTGTAGTTGTATGGGTTGGACTACCTGAACCGGAGCTTTTCCAAGCATAGGACGGCATAGGTCTTTAACTTCTTTAGGGAGATTGGAGTTCGACTGGGAGGGTAAGTTAAATGACTTTGTCGTTGTGGTGCCTCTGCTCGTGGTCGAGACACCAGTAGTTCAGGCAGTATT ************************************************...................(((((((((((........((............))........)))))))).)))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	M044 female body	V105 male body	V039 embryo	V106 head
.........................................................................................................GAAGGGTAAGTTAAATTACTTTGTT..................................................	25	3	1	1.00	1	1	0	0	0	0
...................................................................................................CGATTGGGAGGGTAGTTTAA.............................................................	20	3	5	0.40	2	0	0	2	0	0
.........................................GACCATTTCCAAGCATAG.........................................................................................................................	18	2	5	0.40	2	0	2	0	0	0
........................................................................................................................TAACTATGTCGTTGTGGGGC........................................	20	3	4	0.25	1	1	0	0	0	0
.................................CTGAACCCGAGCTTATCCAG...............................................................................................................................	20	3	6	0.17	1	0	0	0	1	0
....................................................................................AGGTAGATTGGAGATCGA..............................................................................	18	2	7	0.14	1	1	0	0	0	0
.........................................................................................GATTGGTGTTTGACTGGG.........................................................................	18	2	8	0.13	1	0	0	0	1	0
............................................................................................................................ATAGTCGCTGTGGTGCCTCT....................................	20	3	8	0.13	1	0	1	0	0	0
......................................................................................................................................TGGTGACACTGCTCGTGTTC..........................	20	3	12	0.08	1	1	0	0	0	0
...................................................................................TAGGGGGATTGGTGTTC................................................................................	17	2	12	0.08	1	1	0	0	0	0
..............................................................................TTCTTTAGGGAGAATAGA....................................................................................	18	2	15	0.07	1	0	0	0	1	0
................................................................................................................................................................CCAGTAGATGTGGCAGTAT.	19	3	19	0.05	1	0	0	0	0	1
.................................................................................TTTAGGGGGATGGGCGTTC................................................................................	19	3	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_12916:1772649-1772828 -	dan_487	GACATTCCGAACATCAACATACCCAACCTGATGGACTTGGCCTCGAAAAGGTTCGTATCCTGCC-GTATCCAGAAATTGAAGAAATCCCTCTAA----------------CC-------TCAAGCT---------GAC-----------CCTCCCATTC------AATTTAC---TGAAACAGCAACACCACGGAGACGAGCACCAGCTCTGTGGTCATCAAGTCCGTCATAA
droBip1	scf7180000396728:435007-435184 -		GACATTCCGAACATCAACATCCCCAACCTGATGGACTTGGCCTCGAAAAGGTTCGTATCCTGCT-G-----AGCAG-CGAAGGAATCCCTCTAA----------------C--------TTGAGAG---------GTC-----------TCTACCATTTA--CC-TTCTC-CCATCACCACAGCAACACCACCGAGACGAGCACCAGCTCCGTGGTGATCAAGTCGGTCATCA
droKik1	scf7180000302816:145255-145427 +		GACATTTCGGATATTAATATTCCCAACCTAATGGACTTGAAATCTAAAAGGTAACTATATCCCA-----------T-T-------------------------------------TTA-----TATATTTTTATTGCTCTTCCTCTAATTCTCTTAATCT--CTAAATTT-A---CCCAACAGCAACACTACGGAAACAAGCACTAGTTCGGTGGTAATAAAATCAATTATTA
droFic1	scf7180000453904:1534249-1534307 +		GACATTCAGGATATAAACATTTCCAATTTAGGGGAAATGGCATCAAAAAGGTGTGTACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490770:27457-27617 +		GAAATTCCGGATATTAATATTTCCAATTTAGGTGACCTGGCATTGAAAAGGTTCGTTTTTATAATG-----AAAAT-ATAA------------ATA--CTCAA-------T--------------------------------------TCTACTAACTA--CC-TTATT-A---TATAACAGCAATACGACCGAAACGAGCACTAGTTCCGTAGTAATAAAATCGGTTATTA
droRho1	scf7180000779252:1165-1324 -		GACATTCCTGACATTAATATTCCCAATTTAAGTGACTTGGCAACGACTAGGTGAGTTTTTCAAATA-----AATAT-AAA--------------T--CCCCAA-------C--------------------------------------ACTACTAAATA--TCATAATT-A---TTTAACAGCAACACAACGGATACGAGCACAAGTTCTGTAGTAATAAAATCGGTTATAA
droBia1	scf7180000301455:16330-16483 -		GACATTCCGGATATTAACATCTCCAATTTGAGGGACTTATCGTCTAAAAGGTGTGTTTTCACATAA-----AACCT-TAAA------------A----------------C--------------------------------------TTTCTTACTTA--TCCCTGTT-A---C-TTACAGCAACACGACGGAAACAAGTACTAGTTCAGTAGTAATAAAATCTGTTATTA
droTak1	scf7180000413017:557656-557813 +		GATATTCCGGATATTAATATTTCCAACTTAGGAGACTTGGCATCGAAGAGGTGAGTTTTTACAAGA-----ATCAT-TAGA------------A----------------C--------------------------------------TCTATTAATTA--TCCTAATT-ACTCAATAGCAGCAACACGACGGAAACGAGTACTAGTTCTGTAGTAATAAAATCTGTTATTA
droEug1	scf7180000409154:10380-10544 -		GATATTCCGGATATTAACATTTCCAATTTAGGGGATTTGACATCGAAAAGGTTAGTTTTTTAAATA-----AACAT-TAAA------------AGAGATCTAA-------A--------------------------------------ATTAATACTTAAAAA-AAAAT-A---TTTTACAGTAACACAACGGAAACCAGCACGAGTTCTGTGGTAATAAAATCTGTTATTA
dm3	chr2L:11295-11459 -		GAAATTCCAAATATTAATATTTCTAATTTAGAGGACTTGGAATCGAAAAGGTGTGCTTCTACAAGA-----AACAT-TGAC------------ATAAGCTTTA-------A--------------------------------------CCTACTAATTTTTTT-TTTTT-A---CCTAACAGAAATACGACGGAAACGAGTACTAGTTCTGTTGTAATTAAATCTATAATTA
droSim2	2l:5475-5637 -	dsi_386	GAAATTCCAAATATTAATATCTCTAATTTAGAGGACTTGGAATCGAAAAGGTAAGCTTCTACAAAA-----AACAT-TGAA------------ATAAACTTTA-------A--------------------------------------CGTACTAATAT--TT-TTTTT-A---CTTAACAGAAATACGACGGAAACGAGTACTAGTTCTGTTGTAATTAAATCTATAATTA
droSec2	scaffold_14:19358-19519 -		GAAATTCCAAATATTAATATCTCTAATTTAGAGGACTTGGAATCGAAAAGGTGAGCTTCTACAAAA-----AACAT-TGAC------------ATAAACTTTA-------A--------------------------------------CGTACTAAT-A--TT-TTTTT-A---CTTAACAGAAATACGACGGAAACGAGTACTAGTTCTGTTGTAATTAAATCTATAATTA
droYak3	2L:8724-8886 -		GATATTCCAAATATAAATATTTCTAATTTAGAGGATTTGGAATCGAAGAGGTGCGGTACTAAAATA-----AACAT-TTAC------------ATAAGCTGTA-------T--------------------------------------CCTACTAATTA--TT-GAAAT-A---CTTAACAGAAACACGACGGAGACGAGTACTAGTTCTGTAGTAATTAAGTCTATAATTA
droEre2	scaffold_4929:39941-40103 -		GATATTCCAAATATAAATATTTCCAATTTAGAGGACTTGGAATCAAAAAGGTACGCTTCAACAAAA-----AACAT-TGAA------------AATACACGTA-------A--------------------------------------CCTACTAATTA--TG-TTATT-A---CTCAACAGAAATACGACGGAGACAAGTAGTAGTTCTGTAGTAATTAAATCTATAATTA
dp5	4_group2:133447-133624 +		GACATTCCCGACATTAACATACCTAATTTAATGGACTTGGCATCAAAGAGGTGCGTGCTCTCATAA-----AACAA-ACA--------------CAAGCAGTCATAATAAATAAATAAATTAAAAA---------------------------ATAAT-A--AT-TTTCT-T---CAAAACAGCAACACGACAGAGACGAGCACCAGTTCTGTAGTAATAAAATCGGTAATTA
droPer2	scaffold_8:3761082-3761261 -		GACATTCCCGACATTAACATACCTAATTTAATGGACTTGGCATCAAAGAGGTGCGTGCTCTCATAA-----AACAA-ACAC------------ATAAGCAGTCATAATAAATCAATAAATAAAAAA---------------------------ATAAT-A--AT-TTTCT-T---CAAAACAGCAACACGACAGAGACGAGCACCAGTTCTGTAGTAATAAAATCGGTAATTA
droWil2	scf2_1100000004585:1807939-1808109 +		GACATACCCGATTTTAATATGCCCAATCTAATGGATTTGGCGCCAAAATGGTAACTAAATTGCA-A----------------------------G--ACTTAA--AGCAAGCCAATAA-----TATATATTA-----------------ATTACTCTTCG--TT-TCGAT-C---CATTTCAGTAATACTACGGAAACCAATACCAGTTCTGTAGTCATCAAATCCATTATCA
droVir3	scaffold_13246:72934-73089 -		GATATACCTAATATAAATATTCCCAATTTATTCGATTTGGCGTCAAAAGGGTATGTAAATGATCGC-----ACT--------------------ACCGTTGCA-------A-------------------------TT-----------TCATCTTATT----A-TTATA-T---TCTTTCAGTAATACCACGGAATCGAGCACTAGCTCTGTTGTCATAAAGTCTGTCATAA
droMoj3	scaffold_6500:129897-130050 -		GATATGCCTAATATAAATATACCAAATTTACTAGATTTGGCTTCCAAAGGGTACGTATAA-----------CACCT-TTAA------------TTTTGTTTCA-------A--------------------------------------TATCTTAC-----TG-TTTTT-A---TTTTTTAGCAATACCACAGAAACAAGCACTAGCTCTGTCGTCATAAAGTCGGTTATAA
droGri2	scaffold_15252:17160129-17160292 +		GACATACCTAATATTGATATACCGAATTTATTGGATTTGGCGTCAAAAAGGTGTGTATATTTATAA-----GGTTG-CTAC------------AAAAGTTCCT-------A------A-----T-------------------------TTAATTAATTA--AA-TTCTC-A----TTTTTAGTAACACCACAGAAACGAGCACAAGCTCGGTCGTCATCAAATCGGTAATAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

GACATTCCGAACATCAACATACCCAACCTGATGGACTTGGCCTCGAAAAGGTTCGTATCCTGCC-GTATCCAGAAATTGAAGAAATCCCTCTAA----------------CC-------TCAAGCT---------GAC-----------CCTCCCATTC------AATTTAC---TGAAACAGCAACACCACGGAGACGAGCACCAGCTCTGTGGTCATCAAGTCCGTCATAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............CAACATACCCAACCTGATG........................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0
.....................................................................................................................................................................................AGCAACACCACGGAGACGAG................................	20	1	1.00	1	1	0	0	0	0	0
...............AACATACCCAACCTGATGGACT....................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................AC---TGAAACAGCAACACCACGGA......................................	22	1	1.00	1	0	0	0	0	0	1
..............CAACATACCCAACCTGATGGA......................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................AGGTTCGTATCCTGCC-GA......................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................ACATACCCAACCTGATGGACTTGGCCTC.............................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
............ATCAACATACCCAACCTGATGGACT....................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..............CAACATACCCAACCTGATGGAC.....................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......CCGAACATCAACATACCCAACCTGATG........................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0

droBip1

GACATTCCGAACATCAACATCCCCAACCTGATGGACTTGGCCTCGAAAAGGTTCGTATCCTGCT-G-----AGCAG-CGAAGGAATCCCTCTAA----------------C--------TTGAGAG---------GTC-----------TCTACCATTTA--CC-TTCTC-CCATCACCACAGCAACACCACCGAGACGAGCACCAGCTCCGTGGTGATCAAGTCGGTCATCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GACATTTCGGATATTAATATTCCCAACCTAATGGACTTGAAATCTAAAAGGTAACTATATCCCA-----------T-T-------------------------------------TTA-----TATATTTTTATTGCTCTTCCTCTAATTCTCTTAATCT--CTAAATTT-A---CCCAACAGCAACACTACGGAAACAAGCACTAGTTCGGTGGTAATAAAATCAATTATTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GACATTCAGGATATAAACATTTCCAATTTAGGGGAAATGGCATCAAAAAGGTGTGTACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAAATTCCGGATATTAATATTTCCAATTTAGGTGACCTGGCATTGAAAAGGTTCGTTTTTATAATG-----AAAAT-ATAA------------ATA--CTCAA-------T--------------------------------------TCTACTAACTA--CC-TTATT-A---TATAACAGCAATACGACCGAAACGAGCACTAGTTCCGTAGTAATAAAATCGGTTATTA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GACATTCCTGACATTAATATTCCCAATTTAAGTGACTTGGCAACGACTAGGTGAGTTTTTCAAATA-----AATAT-AAA--------------T--CCCCAA-------C--------------------------------------ACTACTAAATA--TCATAATT-A---TTTAACAGCAACACAACGGATACGAGCACAAGTTCTGTAGTAATAAAATCGGTTATAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GACATTCCGGATATTAACATCTCCAATTTGAGGGACTTATCGTCTAAAAGGTGTGTTTTCACATAA-----AACCT-TAAA------------A----------------C--------------------------------------TTTCTTACTTA--TCCCTGTT-A---C-TTACAGCAACACGACGGAAACAAGTACTAGTTCAGTAGTAATAAAATCTGTTATTA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GATATTCCGGATATTAATATTTCCAACTTAGGAGACTTGGCATCGAAGAGGTGAGTTTTTACAAGA-----ATCAT-TAGA------------A----------------C--------------------------------------TCTATTAATTA--TCCTAATT-ACTCAATAGCAGCAACACGACGGAAACGAGTACTAGTTCTGTAGTAATAAAATCTGTTATTA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GATATTCCGGATATTAACATTTCCAATTTAGGGGATTTGACATCGAAAAGGTTAGTTTTTTAAATA-----AACAT-TAAA------------AGAGATCTAA-------A--------------------------------------ATTAATACTTAAAAA-AAAAT-A---TTTTACAGTAACACAACGGAAACCAGCACGAGTTCTGTGGTAATAAAATCTGTTATTA	Size	Hit Count	Total Norm	Total
No Reads

dm3

GAAATTCCAAATATTAATATTTCTAATTTAGAGGACTTGGAATCGAAAAGGTGTGCTTCTACAAGA-----AACAT-TGAC------------ATAAGCTTTA-------A--------------------------------------CCTACTAATTTTTTT-TTTTT-A---CCTAACAGAAATACGACGGAAACGAGTACTAGTTCTGTTGTAATTAAATCTATAATTA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................TACGACGGAAACGAGTACTAGTTCTGT....................	27	1	183.00	183	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	1	1	0	33	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	6	3	4	102	1	0	0	0	0
....................TTCTAATTTAGAGGACTTGGAATCGAA..........................................................................................................................................................................................	27	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GGACTTGGAATCGAAAAG.......................................................................................................................................................................................	18	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ATTTAGAGGACTTGGAATCGAAAAGA......................................................................................................................................................................................	26	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TACGACGGAAACGAGTACTAGTTC.......................	24	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0
...........................................................................................................................................................................................ACGACGGAAACGAGTACTAGTTCTGT....................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0
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................................GGACTTGGAATCGAAAAGGTG....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TAATATTTCTAATTTAGAGGACTTGG.................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TTA-------A--------------------------------------CCTACTAATTTTTTT-TTT.................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................AAATACGACGGAAACGAG................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GAAATTCCAAATATTAATATCTCTAATTTAGAGGACTTGGAATCGAAAAGGTAAGCTTCTACAAAA-----AACAT-TGAA------------ATAAACTTTA-------A--------------------------------------CGTACTAATAT--TT-TTTTT-A---CTTAACAGAAATACGACGGAAACGAGTACTAGTTCTGTTGTAATTAAATCTATAATTA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................TACGACGGAAACGAGTACTAGTTCTGT....................	27	1	79.00	79	0	0	2	0	0	0	0	0	0	0	76	0	1	0	0	0	0
.......................TAATTTAGAGGACTTGGAATCGAAA.........................................................................................................................................................................................	25	1	43.00	43	0	0	22	4	0	0	2	0	0	0	13	0	2	0	0	0	0
............................TAGAGGACTTGGAATCGAAAAGGTA....................................................................................................................................................................................	25	1	34.00	34	0	0	0	1	0	0	2	0	0	0	11	0	19	1	0	0	0
..........................TTTAGAGGACTTGGAATCGAAAAGGTA....................................................................................................................................................................................	27	1	31.00	31	0	0	1	0	0	0	0	0	0	0	9	0	20	1	0	0	0
..........................................................................................................................................................................................TACGACGGAAACGAGTACTAGTTC.......................	24	1	28.00	28	0	0	0	0	0	0	1	0	0	0	17	0	8	2	0	0	0
............................TAGAGGACTTGGAATCGAAAAGGTAA...................................................................................................................................................................................	26	1	19.00	19	0	0	0	0	0	0	0	0	0	0	1	0	18	0	0	0	0
.......................TAATTTAGAGGACTTGGAATC.............................................................................................................................................................................................	21	1	16.00	16	0	0	10	0	0	0	0	0	0	0	6	0	0	0	0	0	0
........................................................................................................................................................................................AATACGACGGAAACGAGTACTAGTTC.......................	26	1	14.00	14	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0
...........................TTAGAGGACTTGGAATCGAAAAGGTA....................................................................................................................................................................................	26	1	14.00	14	0	0	0	0	0	0	1	0	0	0	7	0	6	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTGTTGTAATTAAA..........	26	1	13.00	13	0	0	3	4	0	0	0	0	0	0	5	1	0	0	0	0	0
.......................TAATTTAGAGGACTTGGAATCGAAAA........................................................................................................................................................................................	26	1	11.00	11	0	0	5	0	0	0	1	1	0	0	4	0	0	0	0	0	0
.....................TCTAATTTAGAGGACTTGGAATCGAAA.........................................................................................................................................................................................	27	1	9.00	9	0	0	5	0	0	0	0	0	0	0	1	0	3	0	0	0	0
.............................AGAGGACTTGGAATCGAAAAGGTA....................................................................................................................................................................................	24	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0
...............................................AAGGTAAGCTTCTACAAAA-----AACAT-T...........................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
.............................AGAGGACTTGGAATCGAAAAGGTAAGC.................................................................................................................................................................................	27	1	7.00	7	0	0	0	0	0	0	0	1	0	0	0	0	6	0	0	0	0
..........................TTTAGAGGACTTGGAATCGAAAAGGT.....................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	1	0	1	0	3	0	2	0	0	0	0
................................................................................................................................................................................TTAACAGAAATACGACGGAAACGAG................................	25	1	6.00	6	0	0	0	0	0	0	1	0	0	0	5	0	0	0	0	0	0
.................................................................................................................................................................................................GAAACGAGTACTAGTTCTGTTGTA................	24	1	6.00	6	0	0	0	0	0	0	1	3	0	0	0	0	1	1	0	0	0
.................................................................................................................................................................................TAACAGAAATACGACGGAAACGAGTAC.............................	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
..............................GAGGACTTGGAATCGAAA.........................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.................................................................................................................................................................................TAACAGAAATACGACGGAAA....................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..................................................GTAAGCTTCTACAAAA-----AACAT-TGAA------------A...........................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.......................TAATTTAGAGGACTTGGAATCGAA..........................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTGTTGTAATT.............	23	1	5.00	5	0	1	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0
...........TATTAATATCTCTAATTTAGAGGACT....................................................................................................................................................................................................	26	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TATCTCTAATTTAGAGGACTTGGAA...............................................................................................................................................................................................	25	1	5.00	5	0	0	0	2	1	0	1	0	0	1	0	0	0	0	0	0	0
........................AATTTAGAGGACTTGGAATCGAAA.........................................................................................................................................................................................	24	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TCTAATTTAGAGGACTTGGAATCGAA..........................................................................................................................................................................................	26	1	5.00	5	0	0	1	1	0	0	0	0	0	0	2	0	1	0	0	0	0
...................................................TAAGCTTCTACAAAA-----AACAT-TGAA------------ATA.........................................................................................................................................	27	1	5.00	5	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TAACAGAAATACGACGGAAACGAG................................	24	1	4.00	4	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0
.................................................................................................................................................................................................GAAACGAGTACTAGTTCTGTTGTAA...............	25	1	4.00	4	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0
.......................TAATTTAGAGGACTTGGAATCGA...........................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...............................................AAGGTAAGCTTCTACAAAA-----AACAT-............................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
................................GGACTTGGAATCGAAAAGGTA....................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..............TAATATCTCTAATTTAGAGGACTTG..................................................................................................................................................................................................	25	1	4.00	4	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0
....................CTCTAATTTAGAGGACTTGGAATCGA...........................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
......................................................................................................................................................................................................GAGTACTAGTTCTGTTGTAATTAAA..........	25	1	4.00	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTGTTGTAATTA............	24	1	4.00	4	0	0	0	1	0	0	0	1	0	0	1	1	0	0	0	0	0
.....................................................................................................................................................................................AGAAATACGACGGAAA....................................	16	2	4.00	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
...................................................................................................................................................................................................AACGAGTACTAGTTCTGTTGTAATTAAA..........	28	1	4.00	4	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0
.......................TAATTTAGAGGACTTGGAATCGAAAT........................................................................................................................................................................................	26	1	4.00	4	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................TAAGCTTCTACAAAA-----AACAT-TGAA------------A...........................................................................................................................................	25	1	4.00	4	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................TCTAATTTAGAGGACTTGGAA...............................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
.........................................................................................................................................................................T-A---CTTAACAGAAATACGACGGAA.....................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.....................TCTAATTTAGAGGACTTGGAATC.............................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
................................GGACTTGGAATCGAAA.........................................................................................................................................................................................	16	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................TTTAGAGGACTTGGAATCGAAAAG.......................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............TAATATCTCTAATTTAGAGGACTT...................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ATACGACGGAAACGAGTACTAGTTC.......................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTGTTGT.................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................TGGAATCGAAAAGGTAAGCTTCTAC...........................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............................TAGAGGACTTGGAATC.............................................................................................................................................................................................	16	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............TAATATCTCTAATTTAGAGGACTTGGAA...............................................................................................................................................................................................	28	1	3.00	3	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................TCTAATTTAGAGGACTTGGAATCGA...........................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
................................................................................................................................................................................TTAACAGAAATACGACGGAAAA...................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................TACGACGGAAACGAGTACTAGTTCTG.....................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTGTT...................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................................................................................................................ACGAGTACTAGTTCTGTTGTAATTAAA..........	27	1	3.00	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
...........................TTAGAGGACTTGGAATCGAAA.........................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..................................................................................................................................................................................................AAACGAGTACTAGTTC.......................	16	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........................TTAGAGGACTTGGAATCGAAAAGGTAA...................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.................TATCTCTAATTTAGAGGACTTGGAATC.............................................................................................................................................................................................	27	1	3.00	3	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................TGGAATCGAAAAGGTAAGCTTC..............................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........TATTAATATCTCTAATTTAGAGGAC.....................................................................................................................................................................................................	25	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AACGAGTACTAGTTCTGTTGTA................	22	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0
...........................TTAGAGGACTTGGAATCGAAAAGG......................................................................................................................................................................................	24	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GAGGACTTGGAATCGAA..........................................................................................................................................................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................TACGACGGAAACGAGTACTAGTT........................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0
........................................................................................................................................................................................AATACGACGGAAACGAGT...............................	18	2	2.50	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
........................................................................................................................................................................................AATACGACGGAAACGAGTACTAGT.........................	24	2	2.50	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.........................................................................................................................................................................T-A---CTTAACAGAAATACGACGGA......................................	22	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
................................GGACTTGGAATCGAAAA........................................................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................TTAGAGGACTTGGAATCGAAAA........................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................TTTAGAGGACTTGGAATCGAAAAGG......................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................GAAACGAGTACTAGTTCTGTTGTAT...............	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..................................ACTTGGAATCGAAAAGGTA....................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................AGAGGACTTGGAATCGAAAAGGTAAGCA................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
....................................TTGGAATCGAAAAGGTAAGC.................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................TCTAATTTAGAGGACTTGGAATCGAAAA........................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
....................................TTGGAATCGAAAAGGTAAGCTTCTAC...........................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................TCTCTAATTTAGAGGACTTGGAAT..............................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
....................................TTGGAATCGAAAAGGTAAGCTTC..............................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................TAAGCTTCTACAAAA-----AACAT-TGAA------------............................................................................................................................................	24	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTGTTGTAATTAA...........	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTGTTGTA................	20	1	2.00	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0
............................TAGAGGACTTGGAATCGAAA.........................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................TACGACGGAAACGAGTACTA...........................	20	2	2.00	4	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................AACGAGTACTAGTTCTGTTGTAAT..............	24	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
....................................TTGGAATCGAAAAGGTAA...................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................ACTAGTTCTGTTGTAATTAAA..........	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................TTTAGAGGACTTGGAATCGA...........................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................AGGACTTGGAATCGAA..........................................................................................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................TCTCTAATTTAGAGGACTTGGAATCGAAA.........................................................................................................................................................................................	29	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................T-A---CTTAACAGAAATACGACG........................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................GAGGACTTGGAATCGAAAAGGTAAGCC................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................TTTAGAGGACTTGGAATCGAA..........................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................TTTAGAGGACTTGGAATCGAAAA........................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................GACTTGGAATCGAAA.........................................................................................................................................................................................	15	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................T-A---CTTAACAGAAATACGACGGAAA....................................	24	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................ACGAGTACTAGTTCTGTTGTAATTA............	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...................TCTCTAATTTAGAGGACTTGGAATC.............................................................................................................................................................................................	25	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................TTTAGAGGACTTGGAATCGAAAAGAA.....................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................TTTAGAGGACTTGGAATCGAAA.........................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TAATTTAGAGGACTTGGAAT..............................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................CTCTAATTTAGAGGACTTGGAAT..............................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...................TCTCTAATTTAGAGGACTTGGAATCGAA..........................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
...............................AGGACTTGGAATCGAAAAGGTAAGCC................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.....................................TGGAATCGAAAAGGTAAGC.................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................CTCTAATTTAGAGGACTTGGAATCGAAA.........................................................................................................................................................................................	28	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
............................TAGAGGACTTGGAATCGAAAAG.......................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................TCTCTAATTTAGAGGACTTGGAATCGAAT.........................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................TTTT-A---CTTAACAGAAATACGAC.........................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
.............................................................................................................................................................................................GACGGAAACGAGTACTAGTTC.......................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................TAATTTAGAGGACTTGGAATCGAAAAGA......................................................................................................................................................................................	28	1	2.00	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................TCTAATTTAGAGGACTTGGAAT..............................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
...............................................AAGGTAAGCTTCTACAAAA-----AACA..............................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................GAAACGAGTACTAGTTC.......................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................AGAGGACTTGGAATCGAAAAGGTAA...................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................AACAGAAATACGACGGAAACGAGTAC.............................	26	2	1.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................................................................................................................................................................GAAATACGACGGAAACGAGTAC.............................	22	2	1.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................AAGGTAAGCTTCTAC...........................................................................................................................................................................	15	2	1.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................................................................................................................................................................GAAATACGACGGAAA....................................	15	2	1.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................ATCGAAAAGGTAAGCTTC..............................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................TACTAGTTCTGTTGTAATTAAATCTA......	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................A-------A--------------------------------------CGTACTAATAT--TT-TTTTT-A---CTTAAC....................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................TCGAAAAGGTAAGCTTCTAC...........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................AATTTAGAGGACTTGGAAT..............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................ACGACGGAAACGAGTACTAGTTCTGT....................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................ACTTGGAATCGAAAA........................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................TAACAGAAATACGACGT.......................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................GAAACGAGTACTAGT.........................	15	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................AAGGTAAGCTTCTACAAAA-----AAC...............................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................GAGTACTAGTTCTGTTGTAATT.............	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGAGGACTTGGAATCGA...........................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............TAATATCTCTAATTTAGA.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTAGAGGACTTGGAATCGAAAAGGTAT...................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................TTAACAGAAATACGACGGAAACGAGT...............................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................AACGAGTACTAGTTC.......................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................TCTAATTTAGAGGACTTGGA................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................T-A---CTTAACAGAAATACGACGGAAAC...................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................T-A---CTTAACAGAAATAC............................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................AAAGGTAAGCTTCTACAAAA-----A.................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................CTTAACAGAAATACGACGGAA.....................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............TAATATCTCTAATTTAGAG........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................GGACTTGGAATCGAAAAGGTAAGCTT...............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................TAGTTCTGTTGTAATTAAATCTATAATT.	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AATTTAGAGGACTTGGAATCGAAC.........................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AACAGAAATACGACGGAAACGAGT...............................	24	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TACGACGGAAACGAGT...............................	16	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................CTCTAATTTAGAGGACTTGGAATCGAA..........................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AGGACTTGGAATCGAAAAGGT.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTTT-A---CTTAACAGAAATACGACGGA......................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................GTACTAGTTCTGTTGTAAT..............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ATCGAAAAGGTAAGCTTCTA............................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................ACTTGGAATCGAAAAG.......................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................CTAGTTCTGTTGTAA...............	15	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ACGAGTACTAGTTCTGTTGTAATT.............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................AAGGTAAGCTTCTACAAA........................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTG.....................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................ATTTAGAGGACTTGGAATCGAAAAGGTA....................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................TAGTTCTGTTGTAATTAAATCTATA....	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............TTAATATCTCTAATTTAGAGGACTTGG.................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TAATTTAGAGGACTTGGAAAA.............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................AATACGACGGAAACGAGTACTAGTTCTGT....................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTGTTGTAATTAAATC........	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AATACGACGGAAACGAGTACTAGTT........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................AACGAGTACTAGTTCTGTTGTAATTA............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................TCTCTAATTTAGAGGACTTGGAATCGA...........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTGTTGTAATTAAAT.........	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TAATTTAGAGGACTTG..................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................CGGAAACGAGTACTAGTTCTGTTGTAA...............	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAACGAGTACTAGTTCTGTTGTAAT..............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................TCTCTAATTTAGAGG.......................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................TTTAGAGGACTTGGAATCGT...........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................AGGTAAGCTTCTACAAAA-----AACAT-............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................AGGTAAGCTTCTACAAAA-----AACAT-TGAA------------............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGTACTAGTTCTGTTGTAAT..............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................TTGGAATCGAAAAGG......................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................CGACGGAAACGAGTACTAGTTCTGT....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................TTTAGAGGACTTGGAATCGAAAAGGG.....................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................TACAAAA-----AACAT-TGAA------------ATAAACTT....................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................TAGAGGACTTGGAATCGAAATT.......................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................GAAACGAGTACTAGTTCTGTTGTAATA.............	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TACGACGGAAACGAGTACT............................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................ATTTAGAGGACTTGGAATCGA...........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................TAGAGGACTTGGAATCGAAAT........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................T--TT-TTTTT-A---CTTAACAGAAATACG...........................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................AGAGGACTTGGAATCGAAA.........................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................TTAACAGAAATACGACGGAAA....................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................AAACGAGTACTAGTTCTGT....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................TT-A---CTTAACAGAAATACGACGGAAAAAT.................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTTT-A---CTTAACAGAAATACGACGGAA.....................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTCTAATTTAGAGGACTTGGA................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TAACAGAAATACGACGGAA.....................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................CAGAAATACGACGGAA.....................................	16	2	1.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
.......................TAATTTAGAGGACTTGGAATCGAT..........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................GAAACGAGTACTAGTTCTGTTGTAAA..............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................AATTTAGAGGACTTGGAATC.............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................GTACTAGTTCTGTTGTAATT.............	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AGTTCTGTTGTAATTAAA..........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................TAATTTAGAGGACTTGGAATCG............................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGAGGACTTGGAATCGAAAAGGTAAAA.................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................AGTTCTGTTGTAATTAA...........	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................GAAACGAGTACTAGTTCTGTTGTAATTA............	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................CAT-TGAA------------ATAAACTTTA-------A--------------------------------------CGT.................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTTT-A---CTTAACAGAAATACGACGT.......................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................TTTAGAGGACTTGGAATCGAAAAGGTAA...................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............TAATATCTCTAATTTAGAGGACTTGG.................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TAACAGAAATACGACG........................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................AGAGGACTTGGAATCGAAAAGGTAAGCC................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................AGGACTTGGAATCGAAAAGGTAAGC.................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................TGAA------------ATAAACTTTA-------A--------------------------------------CGTACTAATAT--.......................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................TTAGAGGACTTGGAATCGAA..........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................TAACAGAAATACGACGGAAACGAGT...............................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............TTAATATCTCTAATTTAGAGGACTTGGAA...............................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TAAGCTTCTACAAAA-----AACA..............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................GGACTTGGAATCGAAAAGGTAAGCTTC..............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................TAATTTAGAGGACTTGGAATCGAAAAA.......................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................AAGGTAAGCTTCTACAA.........................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................TTAACAGAAATACGACGGAAAT...................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TAACAGAAATACGACGGAAACG..................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................AAGGTAAGCTTCTACA..........................................................................................................................................................................	16	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................CTAATTTAGAGGACTTGGA................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CTAATTTAGAGGACTTGGAA...............................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAAGCTTCTACAAAA-----AACAT-TG..........................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................TCTGTTGTAATTAAATCTATAATTA	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................TTTAGAGGACTTGGAAT..............................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................TGGAATCGAAAAGGTA....................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................TTTA-------A--------------------------------------CGTACTAATAT--TT-TTTTA-C---T.........................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................AAGCTTCTACAAAA-----AACAT-TGAA------------ATGT........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................TACGACGGAAACGAGTACTAG..........................	21	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................TACGACGGAAACGAGTACTAGTTCTGTAA..................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................TATCTCTAATTTAGAGG.......................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................T-TTTTT-A---CTTAACAGAAATACGACGGA......................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................TAATTTAGAGGACTTGGAATCGAAAAGGTA....................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................TAATTTAGAGGACTTGGAATCGAAAAGG......................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................TTTTT-A---CTTAACAGAAATACGACGGAAA....................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GACTTGGAATCGAAAA........................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................ACGAGTACTAGTTCTGTTGTAA...............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................TT-TTTTT-A---CTTAACAGAAATACGACGAT......................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................ATCGAAAAGGTAAGCTT...............................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................AAATACGACGGAAACGAGTAC.............................	21	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................GGACTTGGAATCGAAAAGGTAAGC.................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................TAACAGAAATACGACGGAAACGAGTACT............................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................CTAATTTAGAGGACTTGGAATCG............................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTAACAGAAATACGACGGA......................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................TAATTTAGAGGACTTGGAA...............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................TAGAGGACTTGGAATCGAAAAGG......................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................T-A---CTTAACAGAAATACGACGGAAAA...................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................ACAGAAATACGACGGAAACGAGTACT............................	26	2	1.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
........................AATTTAGAGGACTTGGAATCGA...........................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AGAAATACGACGGAAACGAGTACTAG..........................	26	2	1.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................ACTTGGAATCGAAAAGA......................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GAAATTCCAAATATTAATATCTCTAATTTAGAGGACTTGGAATCGAAAAGGTGAGCTTCTACAAAA-----AACAT-TGAC------------ATAAACTTTA-------A--------------------------------------CGTACTAAT-A--TT-TTTTT-A---CTTAACAGAAATACGACGGAAACGAGTACTAGTTCTGTTGTAATTAAATCTATAATTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................ACGAGTACTAGTTCTGTTGTA................	21	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................ATACGACGGAAACGAGTACTAGTTCTGT....................	28	1	1.00	1	0	1	0	0
......................CTAATTTAGAGGACTTGGA................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................AAATACGACGGAAACGAGT...............................	19	2	1.00	2	1	1	0	0
...................................................................................................................................................................................................AACGAGTACTAGTTCTGTTGTA................	22	1	1.00	1	0	0	1	0
.....TCCAAATATTAATATCTCTAATTTAGA.........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
........................................................................................................................................................................................AATACGACGGAAACGAGT...............................	18	2	1.00	2	0	0	1	1
.....................................................................................................................................................................................AGAAATACGACGGAAACGAGT...............................	21	2	0.50	1	0	1	0	0

droYak3

GATATTCCAAATATAAATATTTCTAATTTAGAGGATTTGGAATCGAAGAGGTGCGGTACTAAAATA-----AACAT-TTAC------------ATAAGCTGTA-------T--------------------------------------CCTACTAATTA--TT-GAAAT-A---CTTAACAGAAACACGACGGAGACGAGTACTAGTTCTGTAGTAATTAAGTCTATAATTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................GACGAGTACTAGTTCTGTAGT.................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................AATTTAGAGGATTTGGAAT..............................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................AGTTCTGTAGTAATTAAGTCT.......	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GACGAGTACTAGTTCTGTAGTAATT.............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GACGGAGACGAGTACTAGTTCTGTAGT.................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................GGATTTGGAATCGAAGAG.......................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................CTAATTTAGAGGATTTGGAATCGAAGA........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................GTTCTGTAGTAATTAAGTCT.......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GAGACGAGTACTAGTTCTGTAGTA................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................ATTTAGAGGATTTGGAATC.............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CACGACGGAGACGAGTACTAGTTCTGT....................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................CTAATTTAGAGGATTTGGA................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................GACGAGTACTAGTTCTGTAG..................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GAGTACTAGTTCTGTAGT.................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................TTCTAATTTAGAGGATTTGG.................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................TTCTGTAGTAATTAAGTCT.......	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GATATTCCAAATATAAATATTTCCAATTTAGAGGACTTGGAATCAAAAAGGTACGCTTCAACAAAA-----AACAT-TGAA------------AATACACGTA-------A--------------------------------------CCTACTAATTA--TG-TTATT-A---CTCAACAGAAATACGACGGAGACAAGTAGTAGTTCTGTAGTAATTAAATCTATAATTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................GACAAGTAGTAGTTCTGTAGT.................	21	1	3.00	3	1	0	0	0	2	0	0
..................ATTTCCAATTTAGAGGACT....................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2	0
...................................................................................................................................................................................................GACAAGTAGTAGTTCTGTAGTAA...............	23	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................GTAGTAGTTCTGTAGTAATTA............	21	1	1.00	1	0	0	0	0	1	0	0
................ATATTTCCAATTTAGAGGACTT...................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................GACAAGTAGTAGTTCTGTAGTA................	22	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................GTAGTTCTGTAGTAATTA............	18	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................AATACGACGGAGACAAGTAGTA...........................	22	1	1.00	1	0	0	0	0	1	0	0

dp5

GACATTCCCGACATTAACATACCTAATTTAATGGACTTGGCATCAAAGAGGTGCGTGCTCTCATAA-----AACAA-ACA--------------CAAGCAGTCATAATAAATAAATAAATTAAAAA---------------------------ATAAT-A--AT-TTTCT-T---CAAAACAGCAACACGACAGAGACGAGCACCAGTTCTGTAGTAATAAAATCGGTAATTA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................GAGCACCAGTTCTGTAGTA................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGCACCAGTTCTGTAGT.................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CGAGCACCAGTTCTGTAGTA................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............ATTAACATACCTAATTTAATGGACTTGGC................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................AATGGACTTGGCATCAAAGA........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................GAGACGAGCACCAGTTCTGTAGT.................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GACGAGCACCAGTTCTGTAGT.................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................GAGCACCAGTTCTGTAGT.................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................GCAACACGACAGAGACGAGCACC............................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

GACATTCCCGACATTAACATACCTAATTTAATGGACTTGGCATCAAAGAGGTGCGTGCTCTCATAA-----AACAA-ACAC------------ATAAGCAGTCATAATAAATCAATAAATAAAAAA---------------------------ATAAT-A--AT-TTTCT-T---CAAAACAGCAACACGACAGAGACGAGCACCAGTTCTGTAGTAATAAAATCGGTAATTA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................ATACCTAATTTAATGGACT....................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................GAGACGAGCACCAGTTCTGTAGT.................	23	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................GACGAGCACCAGTTCTGTAG..................	20	1	1.00	1	0	1	0	0	0	0
...............AACATACCTAATTTAATGGACTT...................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0

droWil2

GACATACCCGATTTTAATATGCCCAATCTAATGGATTTGGCGCCAAAATGGTAACTAAATTGCA-A----------------------------G--ACTTAA--AGCAAGCCAATAA-----TATATATTA-----------------ATTACTCTTCG--TT-TCGAT-C---CATTTCAGTAATACTACGGAAACCAATACCAGTTCTGTAGTCATCAAATCCATTATCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................AACCAATACCAGTTCTGTAGT.................	21	1	3.00	3	0	1	2	0	0
....................GCCCAATCTAATGGATTT...................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
...........................CTAATGGATTTGGCGCCAAAATGTA.....................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................ACCAGTTCTGTAGTCATC.............	18	1	1.00	1	1	0	0	0	0
.............TTAATATGCCCAATCTAATG........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................CAGTTCTGTAGTCATCAAATCCATT....	25	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................AAACCAATACCAGTTCTGTAGT.................	22	1	1.00	1	1	0	0	0	0

droVir3

GATATACCTAATATAAATATTCCCAATTTATTCGATTTGGCGTCAAAAGGGTATGTAAATGATCGC-----ACT--------------------ACCGTTGCA-------A-------------------------TT-----------TCATCTTATT----A-TTATA-T---TCTTTCAGTAATACCACGGAATCGAGCACTAGCTCTGTTGTCATAAAGTCTGTCATAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............ATAAATATTCCCAATTTATTCGATTTGGC................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GCACTAGCTCTGTTGTCATAA............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATACCTAATATAAATATTCCCAATT.............................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TACCACGGAATCGAGCACTAGCTCTGT....................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GCACTAGCTCTGTTGTCAT..............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GTTGTCATAAAGTCTGTCAT..	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AAATATTCCCAATTTATTCG.......................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ATACCACGGAATCGAGCACTAGCT........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GATATGCCTAATATAAATATACCAAATTTACTAGATTTGGCTTCCAAAGGGTACGTATAA-----------CACCT-TTAA------------TTTTGTTTCA-------A--------------------------------------TATCTTAC-----TG-TTTTT-A---TTTTTTAGCAATACCACAGAAACAAGCACTAGCTCTGTCGTCATAAAGTCGGTTATAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............AAATATACCAAATTTACTAGAT.....................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................CCACAGAAACAAGCACTA...........................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................AGCTCTGTCGTCATAAAGTC........	20	1	1.00	1	0	0	0	0	0	1
............ATAAATATACCAAATTTACTAGATTTGG.................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................TAGCTCTGTCGTCATAAAGTCGGTTAT..	27	1	1.00	1	1	0	0	0	0	0

droGri2

GACATACCTAATATTGATATACCGAATTTATTGGATTTGGCGTCAAAAAGGTGTGTATATTTATAA-----GGTTG-CTAC------------AAAAGTTCCT-------A------A-----T-------------------------TTAATTAATTA--AA-TTCTC-A----TTTTTAGTAACACCACAGAAACGAGCACAAGCTCGGTCGTCATCAAATCGGTAATAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_487

scaffold_12916:1772699-1772778 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads