ID:

dan_48

 Coordinate:

scaffold_13340:7931528-7931587 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGTTTGCGCCGTTTTGTGTCCTAGCCGCCTTCTCTCCAATGAGGGCTTCGCATTTTGGACATTCTGCTTTCAATTCCCGCGGAACTGAAAGCCTAATGCCCAGAAAGCGAGGCCTCCATTGTAGAGAATGCGGCTAGAGATATGGACACAGTGGCAAAGA
***********************************.(((((.(((((((((.((((((.((((..(((((((.((((...)))).)))))))..)))).)))))).))))))))).)))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V105
male body		 M044
female body
 V106
head
 V055
head
 M058
embryo
..................................................CATTTTGGACATTCTGCTTTCA........................................................................................ 22 0 1 260.00 260 216 24 7 13 0
.............................TTCTCTCCAATGAGGGCTTCG.............................................................................................................. 21 0 2 93.00 186 95 76 2 13 0
..................................................CATTTTGGACATTCTGCTTTC......................................................................................... 21 0 2 37.50 75 62 3 4 6 0
..................................................CATTTTGGACATTCTGCTTT.......................................................................................... 20 0 2 29.00 58 42 15 1 0 0
.......................................................................................AAAGCCTAATGCCCAGAAAGCG................................................... 22 0 1 16.00 16 4 1 11 0 0
.............................................................................................................AGGCCTCCATTGTAGAGAATG.............................. 21 0 1 16.00 16 12 1 1 2 0
.............................TTCTCTCCAATGAGGGCTTC............................................................................................................... 20 0 2 6.50 13 8 2 0 3 0
..................................................CATTTTGGACATTCTACTTTCA........................................................................................ 22 1 1 3.00 3 3 0 0 0 0
...TTGCGCCGTTTTGTGTCCTAGCCGC.................................................................................................................................... 25 0 1 3.00 3 1 0 2 0 0
............................CTTCTCTCCAATGAGGGCTTCG.............................................................................................................. 22 0 2 2.50 5 4 1 0 0 0
..............................TCTCTCCAATGAGGGCTTCG.............................................................................................................. 20 0 2 2.50 5 0 5 0 0 0
...................................................ATTTTGGACATTCTGCTTTC......................................................................................... 20 0 2 2.50 5 2 1 2 0 0
..................................................CATTTTGGACATTCTGCTTTTA........................................................................................ 22 1 1 2.00 2 2 0 0 0 0
..................................................AATTTTGGACATTCTGCTTTCA........................................................................................ 22 1 1 2.00 2 1 0 0 1 0
..................................................CATTTTGGACATTCTGCTTTCAA....................................................................................... 23 0 1 2.00 2 2 0 0 0 0
..................................................CATTTTGGACATTATGCTTTCA........................................................................................ 22 1 1 2.00 2 1 0 1 0 0
..................................................CATTTTGGACAGTCTGCTTTCA........................................................................................ 22 1 1 2.00 2 2 0 0 0 0
..................................................CATTTTGGACATTCTGCTTTGA........................................................................................ 22 1 1 2.00 2 2 0 0 0 0
.......................................................................................AAAGCCTAATGCCCAGAAAGCGT.................................................. 23 1 1 2.00 2 1 0 0 1 0
..................................................CATTTTGGACATTCTGCTTTAA........................................................................................ 22 1 1 2.00 2 2 0 0 0 0
..................................................................................................................TCCATTGTAGAGAATGCGG........................... 19 0 1 2.00 2 2 0 0 0 0
..................................................CATTTTGGACATACTGCTTTCA........................................................................................ 22 1 1 2.00 2 2 0 0 0 0
..................................................CATTTTGGACATTCTGCTT........................................................................................... 19 0 2 1.50 3 3 0 0 0 0
.............................TTCTCTCCAATGAGGGCTTCGT............................................................................................................. 22 1 2 1.50 3 2 1 0 0 0
.............................TTCTCTCCAATGAGGGCTTCA.............................................................................................................. 21 1 2 1.00 2 2 0 0 0 0
.............................TTCTCTCCAATGAGGTCTTCG.............................................................................................................. 21 1 2 1.00 2 2 0 0 0 0
...................................................ATTTTGGACATTCTGCTTTCAATTCC................................................................................... 26 0 1 1.00 1 0 1 0 0 0
....TGCGCCGTTTTGTGTCCTATCCG..................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.......................................................................................AAAGCCTAATTCCCAGAAAGCG................................................... 22 1 1 1.00 1 0 0 1 0 0
..................................................CATTTTGGACATTGTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................................AAAGCGAGGCCTCCATTGTAG.................................... 21 0 1 1.00 1 0 1 0 0 0
..................................................CCTTTTGGACATTCTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
...................................................ATTTTGGACATTCTGCTTTCA........................................................................................ 21 0 1 1.00 1 0 1 0 0 0
..................................................................................................CCCAGAAAGCGAGGCCTCCAT......................................... 21 0 1 1.00 1 1 0 0 0 0
..................................................CATTTCGGACATTCTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................CATTTTGGATATTCTGCTTTCA........................................................................................ 22 1 1 1.00 1 0 0 0 0 1
.............................TTATCTCCAATGAGGGCTTC............................................................................................................... 20 1 2 1.00 2 1 0 0 1 0
..................................................AATTTGGGACATTCTGCTTTCA........................................................................................ 22 2 1 1.00 1 0 0 0 1 0
....TGCGCCGTTTTGTGTCCTAGCCGCCT.................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0
..................................................CATTTTCGACATTCTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................TATTTTGGACATTCTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.............................................................................................................AGGCCTCCGTTGTAGAGAATGC............................. 22 1 1 1.00 1 0 1 0 0 0
.............................................................................................................AGGCCTCCTTTGTAGAGAATG.............................. 21 1 1 1.00 1 0 1 0 0 0
...TTGCGCCGTTTTGTGTCCTAGCCG..................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..................................................CATTTTGGCCCTTCTGCTTTCA........................................................................................ 22 2 1 1.00 1 1 0 0 0 0
..................................................CATTTTGGACATTCTGCT............................................................................................ 18 0 2 1.00 2 0 1 1 0 0
....TGCGCCGTTTTGTGTCCTAGCCGCCTG................................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0
..................................................CATTTTGGACATTCTGCTTTG......................................................................................... 21 1 2 1.00 2 2 0 0 0 0
..................................................CATTGTGGACATTCTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................CATTTTGGACATTCTCCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................CATTTTGGACACTCTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.............................................................................................................AGGCCTCCGTTGTAGAGAATG.............................. 21 1 1 1.00 1 0 1 0 0 0
..................................................CGTTTTGGACATTCTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
....TGCGCCGTTTTGTGTCCTAGCCGCC................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..................................................CATTTTGGACATTCTGCTTCCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
....TGCGCCGTTTTGTGTCCTAGCCGCATT................................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0
..................................................CATTTTGGACAATCTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................CATTTGGGACATTCTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................CATTTTGGACATTCTGATTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.............................................................................................................AGGCCTCCATTGTAGAGAA................................ 19 0 1 1.00 1 0 0 0 1 0
.....................................................................................................AGAAGGCGAGGCCTCCATTGT...................................... 21 1 1 1.00 1 1 0 0 0 0
...TTGCGCCGTTTTGTGTCCTAGCCGCCT.................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
.......................................................................................AAAGCCTAATGCCCAGAAGGCG................................................... 22 1 1 1.00 1 0 0 1 0 0
...................................................ATTTTGGACATTCTGCTTTCAA....................................................................................... 22 0 1 1.00 1 0 1 0 0 0
..................................................CATTTTGGACCTTCTGCTTTCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.............................................................................................................AGGCCTCAATTGTAGAGAATG.............................. 21 1 1 1.00 1 1 0 0 0 0
.............................TTATCTCCAATGAGGGCTTCG.............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
...............................CTCTCCAATGAGGGCTTCG.............................................................................................................. 19 0 2 0.50 1 0 1 0 0 0
..................................................CATTTTGGACAATCTGCTTTC......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................CATTTTGGACATTCTGCTCTC......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................CATTTTGGACATGCTGCTTT.......................................................................................... 20 1 2 0.50 1 1 0 0 0 0
..................................................CATTTTGGACACTCTGCTTTC......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................CATTTTGGACATTCTGCTTTCG........................................................................................ 22 1 2 0.50 1 0 1 0 0 0
.............................TTCGCTCCAATCAGGGCTTCG.............................................................................................................. 21 2 2 0.50 1 0 0 0 1 0
..................................................CATTTTGGACATTCTGATTTC......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
.............................TTCTATCCAATGAGGGCTTCG.............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
....................................................TTTTGGACATTCTGCTTTC......................................................................................... 19 0 2 0.50 1 0 1 0 0 0
.............................TTCTCCCCAATGAGGGCTTCG.............................................................................................................. 21 1 2 0.50 1 0 1 0 0 0
..................................................AATTTTGGACATTCTGCTTT.......................................................................................... 20 1 2 0.50 1 1 0 0 0 0
..................................................CATTTTGGACATTATGCTTTC......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
........................................GAGGGCTGCGCATTATGGA..................................................................................................... 19 2 2 0.50 1 1 0 0 0 0
.............................TTCTCTCCAATGCGGGCTTCG.............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
..................................................CATTTTGGACATTCTGCTTTA......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................CATTTTGGACATTCTGCTTTT......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
...................................................ATTTTGGACATTCTGCTT........................................................................................... 18 0 2 0.50 1 0 1 0 0 0
..................................................CATTTTGGACATTGTGCTTTC......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
.............................TTCTCTCCAATGAGGGCTTCGTTG........................................................................................................... 24 3 2 0.50 1 1 0 0 0 0
..................................................CAGTTTGGACATTCTGCTTT.......................................................................................... 20 1 2 0.50 1 0 0 1 0 0
..................................................CATTTTGGACATTCCGCTTTC......................................................................................... 21 1 2 0.50 1 0 0 0 1 0
.............................TTCTCTCCTATGAGGGCTTCG.............................................................................................................. 21 1 2 0.50 1 0 1 0 0 0
..................................................CATTTTGGACATGCTGCTTTC......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................CATTTTGGACAGTCTGCTTTC......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................CATTTTGGACATTCTGATTT.......................................................................................... 20 1 2 0.50 1 1 0 0 0 0
.............................TTCTCTCCAATGATGGCTTCG.............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
..................................................CCTTTTGGACATTCTGCTTTC......................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..................................................CATTTTGGACATTCTGCGTTC......................................................................................... 21 1 2 0.50 1 0 0 1 0 0
.............................TTCTCTCCAATGATGGCGTC............................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
............................CTTCTCTCCAATGAGGGCTTC............................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
.............................TTCTCTCCAATGAGGGCTCCG.............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
.............................TTCTCTCCAATGAGGGCTT................................................................................................................ 19 0 2 0.50 1 0 1 0 0 0
..................................................CATTTTGGACATTCTGCTTTCC........................................................................................ 22 1 2 0.50 1 1 0 0 0 0
.............................TTCTCTCCGATGAGGGCTTCG.............................................................................................................. 21 1 2 0.50 1 0 1 0 0 0
.............................TTCTCTCCAATGAGGGCTTTT.............................................................................................................. 21 2 3 0.33 1 1 0 0 0 0
.............................TTCTCTCCAATGAGGGCTTCT.............................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
...................................................ATTTTGGAAATTCTGCTTTC......................................................................................... 20 1 3 0.33 1 0 1 0 0 0
.............................TTCTCTCCGATGAGGGCTTTT.............................................................................................................. 21 3 4 0.25 1 1 0 0 0 0
............................................................................................................................AGAAGACGGATAGAGATATG................ 20 3 7 0.14 1 0 0 0 1 0
......................................ATAAGGGCTTCACATTTAGG...................................................................................................... 20 3 7 0.14 1 0 0 0 1 0
....................................................................................................CAGAAAGCGACGCCACCA.......................................... 18 2 8 0.13 1 0 0 0 0 1
...................................................CATTTGGACATTCTGCTTTCA........................................................................................ 21 2 13 0.08 1 1 0 0 0 0
..........................................................................................................GCGAGACGTCCATGGTAGA................................... 19 3 15 0.07 1 0 0 0 1 0
...................................................CATTTGGACATTCTGCTTT.......................................................................................... 19 2 17 0.06 1 1 0 0 0 0

Anti-sense strand reads

CCAAACGCGGCAAAACACAGGATCGGCGGAAGAGAGGTTACTCCCGAAGCGTAAAACCTGTAAGACGAAAGTTAAGGGCGCCTTGACTTTCGGATTACGGGTCTTTCGCTCCGGAGGTAACATCTCTTACGCCGATCTCTATACCTGTGTCACCGTTTCT
************************************.(((((.(((((((((.((((((.((((..(((((((.((((...)))).)))))))..)))).)))))).))))))))).)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V106
head
 M044
female body
.........................................................CTGTTAGACGGAAGTTACGGG.................................................................................. 21 3 2 0.50 1 1 0 0
...........................GGAAGAGAGGTTACTCCCGAA................................................................................................................ 21 0 2 0.50 1 0 1 0
...........................................................................................................GCTATGGAGGTAACATCGC.................................. 19 3 14 0.07 1 1 0 0
........................................................................................................................................CTCTATACCTGCCTCACTG..... 19 3 20 0.05 1 0 0 1
.......CGGTATAAAACAGGATCGG...................................................................................................................................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13340:7931478-7931637 + dan_48 GGTTT--GCGCCGTTTTGTGTCCTAGCCGCCTTCTCTCCAATGAGGGCTTCGCATTTTGGACATTCTGCTTTCAATTCCCGCGGAACTGAAAGCCTAATGCCCAGAAAGCGAGGCCTCCATTGTAGAGAATGCGGCTAGAGATATGGACACAG-TGGCAAAGA
droBip1 scf7180000396708:880758-880910 + CTTCTCAGCACTTATTCGAGTCCTAGCCGCCTTCTCTTCAATGAGGGCATCGCATTTTGGACATACTGCCTTCCATATTGGCGGAATCGAAAGCCTAGTGCCCAGAAAGCAGGGCCACCATTGAAGAGAATGCTGTTAGAGATACGGATAAAG----------
droFic1 scf7180000454073:606308-606375 + CTC----------------------------------------------------------------------------------------------ATCCCCACGAAGCGAAGCTCACAGATACGCAGATACAGATACAGATACAGATACAT-TTACATGAA
droRho1 scf7180000779941:106574-106620 + CTACTTTGCGT--------------------------------------------------------------------------------------------------------------------AGAAACGGACGGACAGACGGACATGGCTGGCCCATA
droBia1 scf7180000302126:286903-286915 + AC-----------------------------------------------------------------------------------------------------------------------------------------------------AG-CGACCCAAA
droEre2 scaffold_4770:15532227-15532294 + TCTTTCG-------------ACTTGGAGGTTTCTTTTCCAATGCGCTCTTCACTTTTTGGGGATTTGGCTTTGACTTTCTG----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GGTTT--GCGCCGTTTTGTGTCCTAGCCGCCTTCTCTCCAATGAGGGCTTCGCATTTTGGACATTCTGCTTTCAATTCCCGCGGAACTGAAAGCCTAATGCCCAGAAAGCGAGGCCTCCATTGTAGAGAATGCGGCTAGAGATATGGACACAG-TGGCAAAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................CATTTTGGACATTCTGCTTTCA.........................................................................................221260.002602400132167
...............................TTCTCTCCAATGAGGGCTTCG...............................................................................................................21293.00186760013952
....................................................CATTTTGGACATTCTGCTTTC..........................................................................................21237.50753006624
....................................................CATTTTGGACATTCTGCTTT...........................................................................................20229.005815000421
.........................................................................................AAAGCCTAATGCCCAGAAAGCG....................................................22116.00161000411
...............................................................................................................AGGCCTCCATTGTAGAGAATG...............................21116.00161002121
...............................TTCTCTCCAATGAGGGCTTC................................................................................................................2026.5013200380
...TT--GCGCCGTTTTGTGTCCTAGCCGC.....................................................................................................................................2513.003000012
..............................CTTCTCTCCAATGAGGGCTTCG...............................................................................................................2222.505100040
................................TCTCTCCAATGAGGGCTTCG...............................................................................................................2022.505500000
.....................................................ATTTTGGACATTCTGCTTTC..........................................................................................2022.505100022
....................................................CATTTTGGACATTCTGCTTTCAA........................................................................................2312.002000020
.........................................................................................AAAGCCTAATGCCCAGAAAGCGT...................................................2312.002000110
....................................................................................................................TCCATTGTAGAGAATGCGG............................1912.002000020
....................................................CATTTTGGACATTCTGCTT............................................................................................1921.503000030
...............................TTCTCTCCAATGAGGGCTTCGT..............................................................................................................2221.503100020
...............................TTCTCTCCAATGAGGGCTTCA...............................................................................................................2121.002000020
.....................................................ATTTTGGACATTCTGCTTTCAATTCC....................................................................................2611.001100000
.........................................................................................................AAAGCGAGGCCTCCATTGTAG.....................................2111.001100000
.....................................................ATTTTGGACATTCTGCTTTCA.........................................................................................2111.001100000
....................................................................................................CCCAGAAAGCGAGGCCTCCAT..........................................2111.001000010
....T--GCGCCGTTTTGTGTCCTAGCCGCCT...................................................................................................................................2611.001100000
...TT--GCGCCGTTTTGTGTCCTAGCCG......................................................................................................................................2411.001000010
....................................................CATTTTGGACATTCTGCT.............................................................................................1821.002100001
....T--GCGCCGTTTTGTGTCCTAGCCGCCTG..................................................................................................................................2711.001000001
....................................................CATTTTGGACATTCTGCTTTG..........................................................................................2121.002000020
....T--GCGCCGTTTTGTGTCCTAGCCGCC....................................................................................................................................2511.001000010
...............................................................................................................AGGCCTCCATTGTAGAGAA.................................1911.001000100
...TT--GCGCCGTTTTGTGTCCTAGCCGCCT...................................................................................................................................2711.001000010
.....................................................ATTTTGGACATTCTGCTTTCAA........................................................................................2211.001100000
.................................CTCTCCAATGAGGGCTTCG...............................................................................................................1920.501100000
....................................................CATTTTGGACATTCTGCTTTCG.........................................................................................2220.501100000
......................................................TTTTGGACATTCTGCTTTC..........................................................................................1920.501100000
....................................................CATTTTGGACATTCTGCTTTA..........................................................................................2120.501000010
....................................................CATTTTGGACATTCTGCTTTT..........................................................................................2120.501000010
.....................................................ATTTTGGACATTCTGCTT............................................................................................1820.501100000
...............................TTCTCTCCAATGAGGGCTTCGTTG............................................................................................................2420.501000010
..............................CTTCTCTCCAATGAGGGCTTC................................................................................................................2120.501000010
...............................TTCTCTCCAATGAGGGCTT.................................................................................................................1920.501100000
....................................................CATTTTGGACATTCTGCTTTCC.........................................................................................2220.501000010
...............................TTCTCTCCAATGAGGGCTTTT...............................................................................................................2130.331000010
...............................TTCTCTCCAATGAGGGCTTCT...............................................................................................................2130.331000010
droBip1
CTTCTCAGCACTTATTCGAGTCCTAGCCGCCTTCTCTTCAATGAGGGCATCGCATTTTGGACATACTGCCTTCCATATTGGCGGAATCGAAAGCCTAGTGCCCAGAAAGCAGGGCCACCATTGAAGAGAATGCTGTTAGAGATACGGATAAAG----------SizeHit CountTotal NormTotal
No Reads
droFic1
CTC----------------------------------------------------------------------------------------------ATCCCCACGAAGCGAAGCTCACAGATACGCAGATACAGATACAGATACAGATACAT-TTACATGAASizeHit CountTotal NormTotal
No Reads
droRho1
CTACTTTGCGT--------------------------------------------------------------------------------------------------------------------AGAAACGGACGGACAGACGGACATGGCTGGCCCATASizeHit CountTotal NormTotal
No Reads
droBia1
AC-----------------------------------------------------------------------------------------------------------------------------------------------------AG-CGACCCAAASizeHit CountTotal NormTotal
No Reads
droEre2
TCTTTCG-------------ACTTGGAGGTTTCTTTTCCAATGCGCTCTTCACTTTTTGGGGATTTGGCTTTGACTTTCTG----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 02:24 PM