ID:

dan_470

 Coordinate:

scaffold_12916:8939-9110 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.6 -5.6 -5.2

Flybase annnotation

exon [dana_GLEANR_15715:2]; CDS [Dana\GF14949-cds]; exon [dana_GLEANR_15715:3]; CDS [Dana\GF14949-cds]; intron [Dana\GF14949-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCGAGATGAGGAAATTGGCGAGTTAAAAGCTGAGCGGAATAATACTAGGGTAATTATTTAAAAGACAATATTAACAAAGCTTCGCAAAATTATTTTGGCAGCACTTTAACTGAATCCTAACTCCTTTTGATAATGTGAAATTGATTAAAATAAATATAAAATGTAAAATGTTGTAATTATATTGACTAAAAAAGTTAACCAGCTTTTTTTTCATGTTTCAGTTACTTTTAGAGCATTTGGAGTGCTTGGTGTCCCGCCATGAACGCTCGTT
***********************************************************************************************************...(((.....(((((..(((((.....((.((..((((((.((((..((((...))))...)))).))))))..)).))))))).)))))..)))....***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V039
embryo
 V055
head
 V106
head
...................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCTCGT. 28 0 1 10.00 10 10 0 0 0 0 0
..........................................................................................................................................................................................................................TCAGTTACTTTTAGAGCATTTGGAGT............................ 26 0 1 8.00 8 3 5 0 0 0 0
..........................................................................................................................................................................................................................TCAGTTACTTTTAGAGCATTTGGAG............................. 25 0 1 6.00 6 2 2 2 0 0 0
...................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCTCG.. 27 0 1 6.00 6 6 0 0 0 0 0
........................TAAAAGCTGAGCGGAATAATACTAGGG............................................................................................................................................................................................................................. 27 0 1 4.00 4 4 0 0 0 0 0
.....GATGAGGAAATTGGCGAGTTAAAAGC................................................................................................................................................................................................................................................. 26 0 1 3.00 3 1 2 0 0 0 0
...................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACG...... 23 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................................................................................................ATTGACTAAAAAAGTTAACCAGCTTT................................................................. 26 0 1 2.00 2 0 2 0 0 0 0
...................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCTC... 26 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................................................................TTTGGAGTGCTTGGTGTCCCGCCATG.......... 26 0 1 2.00 2 2 0 0 0 0 0
.............................................................................................................................................................................................................................................TTGGAGTGCTTGGTGTCCCGCCATG.......... 25 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................................................................................................................CATTTGGAGTGCTTGGTGTCCCGCCATG.......... 28 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................................TAACTGAATCCTAACTCCTTTTGAT............................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................................................................................................................................................................GCTTGGTGTCCCGCCATGAACGCTCG.. 26 0 1 2.00 2 1 1 0 0 0 0
............................................................................................................................................................................................................................................TTTGGAGTGCTTGGTGTCCCGCCATGAA........ 28 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................ATTTGGAGTGCTTGGTGTCC................. 20 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................................TGCTTGGTGTACCGCCATGAACGCTCGT. 28 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................................TTTGGAGTGCTTGGTGTCCCG............... 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................TCAGTTACTTTTAGAGCATTTGGA.............................. 24 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTATTTTGCCAGCACTTTAACTGAAT............................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................TGTTTCATGTTTCAGTTACTTTTAGAG...................................... 27 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................GCTTGGTGTCCCGCCATGAACGCTCGTT 28 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................TCAGTTACTTTTAGAGCATTTGG............................... 23 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................GCAGCACTTTAACTGAATCCTAACTCC................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.................................AGCGGAATAATACTAGGTTACTTTT...................................................................................................................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0
........................TAAAAGCTCAGCGGAATAATACTAGGG............................................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAAAGCTCGT. 28 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................TCATGTTTCAGTTACTTTTAGAGC..................................... 24 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................TATTTTGGCAGCACTTTAACTGAATCCT......................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................TATTGACTAAAAAAGTTAACCAGCTTT................................................................. 27 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................CACTTTAACTGAATCCTAACTCCTTT................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................................TTGGTGTCCCGCCATGAACGC..... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................................GGTGTCCCGCCATGAACGCTCGTT 24 0 1 1.00 1 1 0 0 0 0 0
ATCGAGATGAGGAAATTGGCGAGTT....................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
...............................TGAGCGGAATAATACTAGGGTAATTATT..................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................TATTGACTAAAAAAGTTAACCAGCT................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAAC....... 22 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................AGTTACTTTTAGAGCATTTGGAGTGCT......................... 27 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................AGCACTTTAACTGAATCCTAAC...................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................CTGAATCCTAACTCCTTTTGATAATGT....................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................................TTGGTGTCCCGCCATGAACGCTCTTT 26 1 1 1.00 1 0 0 0 1 0 0
....................................................................................................................................................................................................................................TTAGATGATTTGGAGTGCTTTGT..................... 23 3 1 1.00 1 0 0 0 0 1 0
............................................................................................................................................................................TGTAATTCTATTGACTAAAAAAGTTAACC....................................................................... 29 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................TGGTGTCCCGCCATGAACGCTCGT. 24 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................ATTTGGAGTGCTTGGTGTCCCG............... 22 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................ACCAGCTTTTTTTTCATGTTTCAGT................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................CTGAATCCTAACTCCTTTTGATAATGTG...................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...............................TTAGCGGAATAATACTAGGGTAAT......................................................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................AGCATTTGGAGTGCTTGGTGTCC................. 23 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................TGGTGTCCCGCCATGAACGCTCGTT 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGC..... 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................TTGGAGTGCTTGGTGTCCCGCCA............ 23 0 1 1.00 1 0 0 0 1 0 0
.......................................................................................................ACTTTAACTGAATCCTAACTCCTTTT............................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................TACTTTTAGAGCATTTGGAGTGC.......................... 23 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................TCAGTTACTTTTAGAGCATTTGGAGTGC.......................... 28 0 1 1.00 1 1 0 0 0 0 0
...................CGAGTTAAAAGCTGAGCGGAA........................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................GCTTGGTGTCCCGCCATGAACGCTCGT. 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................CCTAACTCCTTTTGATAATGTG...................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................TTTGGCAGCACTTTAACTGAATCCTAAC...................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................................TTTGGAGTGCTTGGTGTCCCGCC............. 23 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................TTAACTGAATCCTAACTCCTTTTGAT............................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................................TTGGTGTCCCGCCATGAACGCTCGTT 26 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCT.... 25 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................TAACTGAATCCTAACTCCTTTTGATAATG........................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................GAGTGCTTGGTGTCCCGCCA............ 20 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................TTTCAGTTACTTTTAGAGCTTTTGGAG............................. 27 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCTT... 26 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................TCATTTACTTTTAGAGCATTTGGAGT............................ 26 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................TATATTGACTAAAAAAGTTAACCAGCT................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................TTCGTGGTGTCCCGCCATGAACGCTCG.. 27 2 1 1.00 1 0 1 0 0 0 0
........................TAAAAGCTTAGCGGAATAATACTAGGG............................................................................................................................................................................................................................. 27 1 1 1.00 1 0 1 0 0 0 0
.......TGAGGAAATTGGCGAGTTAAAAGC................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................TTCAGTTACTTTTAGAGCATTTGG............................... 24 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................AACTGAATCCTAACTCCTTTTGATAATG........................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................TAAATATAAAATGTAAAATGTTGTAA............................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................TTAGAGCATTTGGAGTGCTTGGTG.................... 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCTCGTT 29 0 1 1.00 1 1 0 0 0 0 0
................................................................GACTATATTAACAAAGCTTCGCAAAAT..................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................................GCTTGTGGACTGCTTGGTGT................... 20 3 4 0.25 1 0 0 1 0 0 0
...........................................................................................................TAACTCAATCCTCACGCCTT................................................................................................................................................. 20 3 5 0.20 1 0 0 0 1 0 0
.............................................................................................................................................................................................................................GTTACTTGCAGAACATTTGG............................... 20 3 13 0.08 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................................TGGAGTGCTTGCTGCCCCAC.............. 20 3 17 0.06 1 1 0 0 0 0 0
...............ATGGTGAGTTAAAAGCGGA.............................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................................................................TTGATTGAATAAGTTAACCA...................................................................... 20 3 20 0.05 1 0 0 0 0 0 1
..................................GCGGACTAATACTTCGGT............................................................................................................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................CTTGTGGACTGCTTGGTGT................... 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

TCGCTCTACTCCTTTAACCGCTCAATTTTCGACTCGCCTTATTATGATCCCATTAATAAATTTTCTGTTATAATTGTTTCGAAGCGTTTTAATAAAACCGTCGTGAAATTGACTTAGGATTGAGGAAAACTATTACACTTTAACTAATTTTATTTATATTTTACATTTTACAACATTAATATAACTGATTTTTTCAATTGGTCGAAAAAAAAGTACAAAGTCAATGAAAATCTCGTAAACCTCACGAACCACAGGGCGGTACTTGCGAGCAA
*****************************************************************...(((.....(((((..(((((.....((.((..((((((.((((..((((...))))...)))).))))))..)).))))))).)))))..)))....*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V055
head
 V105
male body
..........................................................................................................................................................................................................................................GTAAACCTCACGAACCACAGGGCGGT............ 26 0 1 7.00 7 6 0 1 0 0
.................CCGCTCAATTTTCGACTCGCCTTATTAT................................................................................................................................................................................................................................... 28 0 1 6.00 6 2 4 0 0 0
.................CCGCTCAATTTTCGACTCGCCTTAT...................................................................................................................................................................................................................................... 25 0 1 4.00 4 2 2 0 0 0
............................................................................................................................................................................................................................................AAACCTCACGAACCACAGGGCGGTACTT........ 28 0 1 4.00 4 4 0 0 0 0
..............................................................................................................................................................................................................................................ACCTCACGAACCACAGGGCGGTACTT........ 26 0 1 4.00 4 4 0 0 0 0
............................................................................................................................................................................................................................................AAACCTCACGAACCACAGGGCGGTACT......... 27 0 1 3.00 3 3 0 0 0 0
..................CGCTCAATTTTCGACTCGCCTTATTAT................................................................................................................................................................................................................................... 27 0 1 3.00 3 0 3 0 0 0
.CGCTCTACTCCTTTAACCGCTCAAT...................................................................................................................................................................................................................................................... 25 0 1 3.00 3 0 3 0 0 0
.........................................................................................................................................................................................................................................CGTAAACCTCACGAACCACAGGGCGGT............ 27 0 1 3.00 3 3 0 0 0 0
.............................................................................................................CGACTTAGGATTGAGGAAAACTATTA......................................................................................................................................... 26 1 1 2.00 2 0 2 0 0 0
.......................................................................................................................................................................................................................................CTCGTAAACCTCACGAACCACAGGGCGGT............ 29 0 1 2.00 2 2 0 0 0 0
.................................................................................................................TTAGGATTGAGGAAAACTATTACAC...................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0
..................................................................................................CGTCGTGAAATTGACTTAGGATTGAGG................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0
.................................................................................................................TTAGGATTGAGGAAAACTATTACACT..................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.....CTACTCCTTTAACCGCTCAATTTT................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...............AACCGCTCAATTTTCGACTCGCCTTATT..................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0
.................................................................................................................TTAGGATTGAGGAAAACTATTACACTT.................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0
........................................................................................................GAAATTGACTTAGGATTGAGGAAAACTA............................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................ACAGGGCGGTACTTGCGAGC.. 20 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................................AACCTCACGAACCACAGGGCGGTACTT........ 27 0 1 1.00 1 1 0 0 0 0
..................................................................................................................TAGGATTGAGGAAAACTATTACAC...................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................TCGTAAACCTCACGAACCACAGGGCG.............. 26 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................................GTAAACCTCACGAACCACAGGGCGG............. 25 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................................ACCTCACGAACCACAGAGCGGTACT......... 25 1 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................AATCTCGTAAACCTCACGAACCACA................... 25 0 1 1.00 1 1 0 0 0 0
...........................TTCGACTCGCCTTATTATGATCCCAT........................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.......ACTCCTTTAACCGCTCAATTTTCGACT.............................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
................ACCGCTCAATTTTCGACTCGACTTATTAT................................................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................................GTAAACCTCACGAACCACGGGGCGGTA........... 27 1 1 1.00 1 1 0 0 0 0
...................GCTCAATTTTCGACTCGCCTTATT..................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................AAACCACAGGGCGGTACTTGCGA.... 23 1 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................................................CTCGTAAACCTCACGAACCACAGGGCGG............. 28 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................TTGAGGAAAACTATTACAC...................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
.............................................GATCCCATTAATAAATTTTCTGTTA.......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..............AAACCGCTCAATTTTCGACTCGCCTTAT...................................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0
.............................................................................................................TGACTTAGGATTGAGGAAAACTATTACAC...................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
...........CTTTAACCGCTCAATTTTCGACTCGCCG......................................................................................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTGACTTAGGATTGAGGAAAAC.............................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0
...................GCTCAATTTTCGACTCGCCTTATTAT................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.............................................................................................................CGACTTAGGATTGAGGAAAACTAC........................................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0
....................................................................................................................GGATTGAGGAAAACTATTACACTTT................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1
........................................................................................................................TGAGGAAAACTATTACACTTTAACT............................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................................TTGGTCGAAAAAAAAGTACAAAGTCAAT............................................... 28 0 1 1.00 1 1 0 0 0 0
......................CAATTTTCGACTCGCCTTATTATGGT................................................................................................................................................................................................................................ 26 1 1 1.00 1 0 1 0 0 0
....................................................................TATAATTGTTTCGAAGCGTTTTAAT................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................................................................................CAGGGCGGGACTAGCGAGC.. 19 2 1 1.00 1 0 0 0 1 0
.................CCGCTCAATTTTCGACTCGCCTTATT..................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................TTTCAATTGGTCGAAAAAAAAGTACAAA..................................................... 28 0 1 1.00 1 0 1 0 0 0
.......ACTGCTTTAACCGCTCAATTTTCGACT.............................................................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................AGTCAATGAAAATCTCGTAAACCTCA............................ 26 0 1 1.00 1 1 0 0 0 0
...........................................................................................................ATTGACTTAGGATTGAGGAAAACTAT........................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
........................................................................................................GAAATTGACTTAGGATTGAGGAAAACT............................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0
.CGCTCTACTCCTTTAACCGCTCAATT..................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..............TAACCGCTCAATTTTCGACTCGCCTTAT...................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...........CTTTAACCGCTCAATTTTCGACTCG............................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0
.CGCTCTACTCCTTTAACCGCTCAAGT..................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
CCGCTCTACTCCTTTAACCGCTCAAT...................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
..................CGCTCAATTTTCGACGCGCCTTAT...................................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................................GTAAACCTCACGAACCACAAGGCGGTAC.......... 28 1 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................................AACCTCACGAACCACAGGGCGGTACT......... 26 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................CGTAAACCTCACGAACCACAGGGCG.............. 25 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................................................................GTAAACCTCACGAACCAAAGGGCGGT............ 26 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................ACAGGGCGGTACTTGCGAGCAA 22 0 1 1.00 1 0 1 0 0 0
............................................................................................................................................................................................................................................TAACCTCACGAACCACAGGGCGGTACT......... 27 1 1 1.00 1 1 0 0 0 0
...................................................................................................GTCGTGAAATTGACTTAGGATTGAGG................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...................................................................................................................AGGATTGAGGAAAACTATTACACTT.................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
......................CAATTTTCGACTCGCCTTATTATGAT................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0
.......................................................................................................TGAAATTGACTTAGGATTGAGGAAA................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0
......................................................................................................................................................................................................TGGTCGAAAAAAAAGTACAAAGTCAA................................................ 26 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................................CGTAAGCCTCACGAACCACAGGGCGGT............ 27 1 1 1.00 1 1 0 0 0 0
..................CGCTCAATTTTCGACTCGCCATAT...................................................................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0
.............TTAACCGCTCAATTTTCGACTCGCCTTA....................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................TTTTTTCAATTGGTAGAA.................................................................. 18 1 6 0.17 1 0 1 0 0 0
.............................................................................................................TGACTTGGGTTTGAGGAAA................................................................................................................................................ 19 2 7 0.14 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:8889-9160 - dan_470 AGCGAGATGAGGAAATTGGCG---AGTTAAAAGCTGAGCGGAATAATACTAGGGTAATTATTT----------------------------------------------------------------------------------AAAAGACAATAT---------------------------------T---------AACAAAG-----CTTCGCAAAATTATTTTGGCAGCACTTTAA----------CTGAATCCTAACTCCTTTTGATAATGTGAAATTGATTAAAATAAATATAAAATGTAAAATGTTGTAATTATATTGA-------------------CTAAAA-AAGTTAACCA------G--------------------------CTT-------------------------------------------------------------------------------------TTT---TTTCATGTTTCAGTTACTTTTAGAGCATTTGGAGTGCTTGGTGTCCCGCCATGAACGCTCGTT
droBip1 scf7180000392937:61308-61503 - AGCGGGATGAGGAAATTGGCG---AGTTGAAGGCGGAGCGCAATAATACCAGGGTAAGTATTG-------------------------------------------------------------------------------TTAAACTGTTTA-------------------------------------------------------------------------AT--CCAAAA-TAAA----------GTGCACTT-----TCT----------------------------------------------AGTCCAGGGCTTGA-------------------TTAAAAAAATCTAATAATCATCCA------------------------------------------------------------------------------------------------------------------TTCC------TTTTTTCAGTTACTTCTGGAGCATTTAGAGTGCCTGGTGTCCCGCCATGAGCGCTCCCT
droKik1 scf7180000302468:438443-438781 - AGCGCGACGAGGAGATCGGCG---AACTGAAGGCGGAGCGTAATAATACAAGGGTAAGCAAAG-------------------------------TGGGACTAAAAGAGCTTTA-----------------AGAATGATTGTATAGAGGAATCTG-------------------------------------------------------------------------TTTGCCATAA-TGAATGAATAAGATGTGTAACGCACGTACA-----------------------------------------------------------------------------TT------TGAATTGTTGAATGCAAGCATTTCAAGACTCCTATTAAAGTCA----AGAAAAAGCAGAATAATTTCAATCTAAAAAATTTACTTAATTTATTAGTGTTTATCGGTATTATTTATTACTTATTCATGATTTC---AATCCCATTTCCTTAGCTTCTTTTGGAGCACTTGGAGTGCCTGGTCTCCCGGCATGAGCGCTCGCT
droFic1 scf7180000453815:50786-50843 + TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCTTCTTCTGGAGCATCTGGAGTGTCTGGTGTCCCGCCACGAGCGTTCCCT
droEle1 scf7180000490640:396655-396712 + TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGCTTCTTTTGGAGCACCTGGAGTGCTTGGTGAGCCGCCACGAGCGTTCCCT
droRho1 scf7180000779930:3757-3814 - TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAGCTTCTCTTGGAGCACCTGGAGTGCTTGGTTTCCCGCCATGAGCGTTCCCT
droBia1 scf7180000302422:2484222-2484288 + AGCGGGACGAGGAGATCGGAG---AGCTCAAGGCGGAGCGAAATAATACCAGGGTAAGGCAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGACA
droTak1 scf7180000415399:1445260-1445411 + TTAAAAT-AAAATAT---TA------------------AAATATAATATATTGAAATATACCA-------------------------------------------------------------------------------TTAAACATTCGGTTT---------------------------------C---------GGTAT--------------------------------------------------------AATTACA-----------------------------------------------------------------------------AG------CCTTTT---------------------------------------------------------------------------------------------------------------------CACTGATAT---AACTTTATATTTCCAGCTTCTTCTGGAGCACCTGGAGTGCCTGGTCTCCCGCCACGAGCGTTCCCT
droEug1 scf7180000409463:49774-49861 - AGCGGGATGAGGAGATCGGGG---AGCTTAAGGCGGAAAGAAATAATACCAGGGTAAGCACTG-------------------------------------------------------------------------------TCCGGAATTCTATTT---------------------------------C---------TGTAAAG----------------------------------------------CGTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2L:6725210-6725269 + AACGTGACGAGGAGATTGGGG---AGCTCAAGGCGGAGAGGAATAATACCAGGGTAAGTGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:6499185-6499262 + GCTGATCTATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTGACTATTTCAGCTGCTCCTCGAACATCTGGAGTGCTTGGTGTCCCGCCACGAGCGTTCCCT
droSec2 scaffold_3:2263886-2263939 + AACGAGACGAGGAGATTGGGG---AGCTCAAGGCGGAGCGGAATAATACCAGGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:6186080-6186207 - TAAATA----GAAAATCTGACCGTTGCTTACTAC-TAACTAAATATTAGAA---------GAT-------------------------------------------------------------------------------TTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTAATCT---TACTTGACCTTTTCAGCTTCTCCTCGAACATCTGGAGTGCTTAGTGTCCCGCCACGAGCGTTCCCT
droEre2 scaffold_4929:15641534-15641653 + AACGAGACGAGGAGATCGGGG---AGCTCAAGGCGGAGCGGAATAATACCAGGGTAAGTGCTC-------------------------------------------------------------------------------TCCGGCAATCTTTGT---------------------------------A---------TGCAACA----------------------------------------------TGGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAATCT---T-------------------------------------------AGGATTTTTATGGCAATGCCTT
dp5 4_group1:3825404-3825591 + AGCGCGACGAGGAGATTGGCG---AACTCAAGGCGGAACGCAATAACACCAGGGTAAGAAGCT-------------------------------------------------------------------------------TTGGGGATTCCA-------------------------------------------------------------------------CCCCCCGCAG-TGAA----------GTGCATCCCAAATCCC-----------------------------------------------------------------------------AA------TCCATTGCTAAATGTGGG--------------------------TCT-------------------------------------------------------------------------------------CTCT------TTCCCGCAGCTTCTACTGGAGCATCTGGAGTGCCTGGTGTCCCGGCATGAGCGCTCCCT
droPer2 scaffold_5:1444608-1444795 - AGCGCGACGAGGAGATTGGCG---AACTCAAGGCGGAACGCAATAACACCAGGGTAAGAAGCT-------------------------------------------------------------------------------TTGGGGATTCCA-------------------------------------------------------------------------CCCCCCGCCG-TGAA----------GTGCATCCCAAATCCC-----------------------------------------------------------------------------AA------TCCATTGCTAAATGTGGG--------------------------TCT-------------------------------------------------------------------------------------CTCT------TTCCCGCAGCTTCTACTGGAGCATCTGGAGTGCCTGGTGTCCCGGCATGAGCGCTCCCT
droWil2 scf2_1100000004585:7335280-7335632 + AACGCGATGAGGAAATTGGCG---AGTTGAAAGCAGAACGCAATAATACCAGAGTAAGAAATCGGGAAAGTCCCGATTTTAATTATCTTTTAAATAGAGCTAAACGAGTGTCATTGTCTGAATATGCGACAGTTTTATTGCTTAGAGAT----GTTTTGATCTTTACAACTTATTGCACTAGTACAACATTCTAATCTTAAACAGAACATGTCATCGCAAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGCAATTGC---AACAAAAGCTGTATAAATTATAACTAATGAAT---CTTAATGAATCTGTGT-----------------CGCCTTTTTATG-----GTCT------TTTTTTTAGCTTCTCCTAGAGCATCTGGAATGCTTGGTATCCCGACATGAGCGCTCCCT
droVir3 scaffold_12963:3356337-3356501 - AACGGGACGAGGAAATTGGTG---AGCTCAAAGCGGAACGCAACAATACGCGGGTAAGCGTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CTAA----------GC-TAC----------------------------------------------------------------------AACAATATCT-------GA------TAAATCTATAAAAGTT-G--------------------------TCT-------------------------------------------------------------------------------------ATTC------TTATTACAGCTACTGCTGGAGCATTTGGAGTGCTTGGTGTCGCGCCATGAGCGTTCCCT
droMoj3 scaffold_6500:13728071-13728236 - AACGTGATGAAGAAATCGGAG---AGCTCAAAGCAGAGCGCAACAATACGCGGGTACGCTGCA------------------------------------------------------------------------------------------------------------------------------------------------CATGG-----------------------CA-TG----------------------------------------------------------------------------------------AGCTATATAT-------GG--TAGAAATCC------------------------------------------AACTAAATCT------------------------------------------------------------------------------GTATATATTGTTATAGCTGCTGCTGGAACATTTGGAGTGCTTGGTGTCGCGTCATGAGCGATCGCT
droGri2 scaffold_15252:2927801-2927974 - AACGCGACGAGGAGATTGGTG---AACTCAAGGCTGAACGCAACAACACGCGGGTAAGCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCC--------------------------------------------------------------------AACAATATCCAAATCATAATCCCAAAACCCGACTAATTATGCG--------------------------AT------------------------------------------------------------------------------------------ACTCGTTATATGCAGCTCCTACTTGAGCACTTGGAGTGTCTGGTTTCGCGACATGAACGCTCGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AGCGAGATGAGGAAATTGGCG---AGTTAAAAGCTGAGCGGAATAATACTAGGGTAATTATTT----------------------------------------------------------------------------------AAAAGACAATAT---------------------------------T---------AACAAAG-----CTTCGCAAAATTATTTTGGCAGCACTTTAA----------CTGAATCCTAACTCCTTTTGATAATGTGAAATTGATTAAAATAAATATAAAATGTAAAATGTTGTAATTATATTGA-------------------CTAAAA-AAGTTAACCA------G--------------------------CTT-------------------------------------------------------------------------------------TTT---TTTCATGTTTCAGTTACTTTTAGAGCATTTGGAGTGCTTGGTGTCCCGCCATGAACGCTCGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCTCGT.28110.00101000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTACTTTTAGAGCATTTGGAGT............................2618.008350000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTACTTTTAGAGCATTTGGAG.............................2516.006220020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCTCG..2716.006600000
...........................TAAAAGCTGAGCGGAATAATACTAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.004400000
.....GATGAGGAAATTGGCG---AGTTAAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003120000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACG......2312.002200000
...................................................................................................................................................................................................................................................................................................................................ATTGA-------------------CTAAAA-AAGTTAACCA------G--------------------------CTT-------------------------------------------------------------------------------------T....................................................................2612.002020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCTC...2612.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAGTGCTTGGTGTCCCGCCATG..........2612.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGTGCTTGGTGTCCCGCCATG..........2512.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGGAGTGCTTGGTGTCCCGCCATG..........2812.002200000
...............................................................................................................................................................................................................................................TAA----------CTGAATCCTAACTCCTTTTGAT........................................................................................................................................................................................................................................................................................2512.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGTGTCCCGCCATGAACGCTCG..2612.002110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAGTGCTTGGTGTCCCGCCATGAA........2811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAGTGCTTGGTGTCC.................2011.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAGTGCTTGGTGTCCCG...............2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTACTTTTAGAGCATTTGGA..............................2411.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGTGTCCCGCCATGAACGCTCGTT2811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTACTTTTAGAGCATTTGG...............................2311.001100000
......................................................................................................................................................................................................................................GCAGCACTTTAA----------CTGAATCCTAACTCC...............................................................................................................................................................................................................................................................................................2711.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTTTCAGTTACTTTTAGAGC.....................................2411.001010000
...............................................................................................................................................................................................................................TATTTTGGCAGCACTTTAA----------CTGAATCCT.....................................................................................................................................................................................................................................................................................................2811.001100000
..................................................................................................................................................................................................................................................................................................................................TATTGA-------------------CTAAAA-AAGTTAACCA------G--------------------------CTT-------------------------------------------------------------------------------------T....................................................................2711.001010000
..........................................................................................................................................................................................................................................CACTTTAA----------CTGAATCCTAACTCCTTT............................................................................................................................................................................................................................................................................................2611.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGTCCCGCCATGAACGC.....2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCCCGCCATGAACGCTCGTT2411.001100000
..................................TGAGCGGAATAATACTAGGGTAATTATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..................................................................................................................................................................................................................................................................................................................................TATTGA-------------------CTAAAA-AAGTTAACCA------G--------------------------CT...........................................................................................................................................................2511.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAAC.......2211.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACTTTTAGAGCATTTGGAGTGCT.........................2711.001010000
........................................................................................................................................................................................................................................AGCACTTTAA----------CTGAATCCTAAC..................................................................................................................................................................................................................................................................................................2211.001010000
............................................................................................................................................................................................................................................................CTGAATCCTAACTCCTTTTGATAATGT...................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTCCCGCCATGAACGCTCGT.2411.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAGTGCTTGGTGTCCCG...............2211.001010000
........................................................................................................................................................................................................................................................................................................................................................................ACCA------G--------------------------CTT-------------------------------------------------------------------------------------TTT---TTTCATGTTTCAGT.................................................2511.001100000
............................................................................................................................................................................................................................................................CTGAATCCTAACTCCTTTTGATAATGTG..................................................................................................................................................................................................................................................................................2811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATTTGGAGTGCTTGGTGTCC.................2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTCCCGCCATGAACGCTCGTT2511.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGC.....2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGTGCTTGGTGTCCCGCCA............2311.001001000
...........................................................................................................................................................................................................................................ACTTTAA----------CTGAATCCTAACTCCTTTT...........................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTTAGAGCATTTGGAGTGC..........................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTTACTTTTAGAGCATTTGGAGTGC..........................2811.001100000
...................CG---AGTTAAAAGCTGAGCGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGTGTCCCGCCATGAACGCTCGT.2711.001100000
..................................................................................................................................................................................................................................................................CCTAACTCCTTTTGATAATGTG..................................................................................................................................................................................................................................................................................2211.001010000
..................................................................................................................................................................................................................................TTTGGCAGCACTTTAA----------CTGAATCCTAAC..................................................................................................................................................................................................................................................................................................2811.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAGTGCTTGGTGTCCCGCC.............2311.001010000
..............................................................................................................................................................................................................................................TTAA----------CTGAATCCTAACTCCTTTTGAT........................................................................................................................................................................................................................................................................................2611.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGTCCCGCCATGAACGCTCGTT2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCT....2511.001010000
...............................................................................................................................................................................................................................................TAA----------CTGAATCCTAACTCCTTTTGATAATG....................................................................................................................................................................................................................................................................................2911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCTTGGTGTCCCGCCA............2011.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCTT...2611.001010000
................................................................................................................................................................................................................................................................................................................................TATATTGA-------------------CTAAAA-AAGTTAACCA------G--------------------------CT...........................................................................................................................................................2711.001100000
.......TGAGGAAATTGGCG---AGTTAAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTACTTTTAGAGCATTTGG...............................2411.001100000
................................................................................................................................................................................................................................................AA----------CTGAATCCTAACTCCTTTTGATAATG....................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................................................................................................................................................................TAAATATAAAATGTAAAATGTTGTAA...........................................................................................................................................................................................................................................2611.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAGCATTTGGAGTGCTTGGTG....................2411.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGGTGTCCCGCCATGAACGCTCGTT2911.001100000
droBip1
AGCGGGATGAGGAAATTGGCG---AGTTGAAGGCGGAGCGCAATAATACCAGGGTAAGTATTG-------------------------------------------------------------------------------TTAAACTGTTTA-------------------------------------------------------------------------AT--CCAAAA-TAAA----------GTGCACTT-----TCT----------------------------------------------AGTCCAGGGCTTGA-------------------TTAAAAAAATCTAATAATCATCCA------------------------------------------------------------------------------------------------------------------TTCC------TTTTTTCAGTTACTTCTGGAGCATTTAGAGTGCCTGGTGTCCCGCCATGAGCGCTCCCTSizeHit CountTotal NormTotal
No Reads
droKik1
AGCGCGACGAGGAGATCGGCG---AACTGAAGGCGGAGCGTAATAATACAAGGGTAAGCAAAG-------------------------------TGGGACTAAAAGAGCTTTA-----------------AGAATGATTGTATAGAGGAATCTG-------------------------------------------------------------------------TTTGCCATAA-TGAATGAATAAGATGTGTAACGCACGTACA-----------------------------------------------------------------------------TT------TGAATTGTTGAATGCAAGCATTTCAAGACTCCTATTAAAGTCA----AGAAAAAGCAGAATAATTTCAATCTAAAAAATTTACTTAATTTATTAGTGTTTATCGGTATTATTTATTACTTATTCATGATTTC---AATCCCATTTCCTTAGCTTCTTTTGGAGCACTTGGAGTGCCTGGTCTCCCGGCATGAGCGCTCGCTSizeHit CountTotal NormTotal
No Reads
droFic1
TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCTTCTTCTGGAGCATCTGGAGTGTCTGGTGTCCCGCCACGAGCGTTCCCTSizeHit CountTotal NormTotal
No Reads
droEle1
TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAGCTTCTTTTGGAGCACCTGGAGTGCTTGGTGAGCCGCCACGAGCGTTCCCTSizeHit CountTotal NormTotal
No Reads
droRho1
TA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAGCTTCTCTTGGAGCACCTGGAGTGCTTGGTTTCCCGCCATGAGCGTTCCCTSizeHit CountTotal NormTotal
No Reads
droBia1
AGCGGGACGAGGAGATCGGAG---AGCTCAAGGCGGAGCGAAATAATACCAGGGTAAGGCAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGACASizeHit CountTotal NormTotal
No Reads
droTak1
TTAAAAT-AAAATAT---TA------------------AAATATAATATATTGAAATATACCA-------------------------------------------------------------------------------TTAAACATTCGGTTT---------------------------------C---------GGTAT--------------------------------------------------------AATTACA-----------------------------------------------------------------------------AG------CCTTTT---------------------------------------------------------------------------------------------------------------------CACTGATAT---AACTTTATATTTCCAGCTTCTTCTGGAGCACCTGGAGTGCCTGGTCTCCCGCCACGAGCGTTCCCTSizeHit CountTotal NormTotal
No Reads
droEug1
AGCGGGATGAGGAGATCGGGG---AGCTTAAGGCGGAAAGAAATAATACCAGGGTAAGCACTG-------------------------------------------------------------------------------TCCGGAATTCTATTT---------------------------------C---------TGTAAAG----------------------------------------------CGTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AACGTGACGAGGAGATTGGGG---AGCTCAAGGCGGAGAGGAATAATACCAGGGTAAGTGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............TTGGGG---AGCTCAAGGCGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........GAGATTGGGG---AGCTCAAGGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GGG---AGCTCAAGGCGGAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTGGGG---AGCTCAAGGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATTGGGG---AGCTCAAGGCGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......CGAGGAGATTGGGG---AGCTCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGATTGGGG---AGCTCAAGGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGATTGGGG---AGCTCAAGGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGATTGGGG---AGCTCAAGGCGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGGAGATTGGGG---AGCTCAAGGCGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GGAGATTGGGG---AGCTCAAGGCGGAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GGCGGAGAGGAATAATACCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AACGTGACGAGGAGATTGGGG---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............ATTGGGG---AGCTCAAGGCGGAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AACGTGACGAGGAGATTGGGG---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GGAGATTGGGG---AGCTCAAGGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGATTGGGG---AGCTCAAGGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GGAGATTGGGG---AGCTCAAGGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGTGACGAGGAGATTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..................................GGAGAGGAATAATACCAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTGGGG---AGCTCAAGGCGGAGAGGAATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGATTGGGG---AGCTCAAGGCGGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CTCAAGGCGGAGAGGAATAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........GAGATTGGGG---AGCTCAAGGCGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ACGAGGAGATTGGGG---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.......CGAGGAGATTGGGG---AGCTCAAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGATTGGGG---AGCTCAAGGCGGAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCTCAAGGCGGAGAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CGTGACGAGGAGATTGGGG---AGCTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATTGGGG---AGCTCAAGGCGGAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........AGGAGATTGGGG---AGCTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GGCGGAGAGGAATAATACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............AGATTGGGG---AGCTCAAGGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................G---AGCTCAAGGCGGAGAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGACGAGGAGATTGGGG---AGCTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGGAGATTGGGG---AGCTCAAGGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGACGAGGAGATTGGGG---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............GATTGGGG---AGCTCAAGGCGGAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCTCAAGGCGGAGAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........GAGGAGATTGGGG---AGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
droSim2
GCTGATCTATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTGACTATTTCAGCTGCTCCTCGAACATCTGGAGTGCTTGGTGTCCCGCCACGAGCGTTCCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTGACTATTTCAG..................................................2012.00200200000000000000
droSec2
AACGAGACGAGGAGATTGGGG---AGCTCAAGGCGGAGCGGAATAATACCAGGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............GATTGGGG---AGCTCAAGGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.......CGAGGAGATTGGGG---AGCTCAAGGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
droYak3
TAAATA----GAAAATCTGACCGTTGCTTACTAC-TAACTAAATATTAGAA---------GAT-------------------------------------------------------------------------------TTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTAATCT---TACTTGACCTTTTCAGCTTCTCCTCGAACATCTGGAGTGCTTAGTGTCCCGCCACGAGCGTTCCCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AACGAGACGAGGAGATCGGGG---AGCTCAAGGCGGAGCGGAATAATACCAGGGTAAGTGCTC-------------------------------------------------------------------------------TCCGGCAATCTTTGT---------------------------------A---------TGCAACA----------------------------------------------TGGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAATCT---T-------------------------------------------AGGATTTTTATGGCAATGCCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....GACGAGGAGATCGGGG---AGCTCAAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
dp5
AGCGCGACGAGGAGATTGGCG---AACTCAAGGCGGAACGCAATAACACCAGGGTAAGAAGCT-------------------------------------------------------------------------------TTGGGGATTCCA-------------------------------------------------------------------------CCCCCCGCAG-TGAA----------GTGCATCCCAAATCCC-----------------------------------------------------------------------------AA------TCCATTGCTAAATGTGGG--------------------------TCT-------------------------------------------------------------------------------------CTCT------TTCCCGCAGCTTCTACTGGAGCATCTGGAGTGCCTGGTGTCCCGGCATGAGCGCTCCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............GATTGGCG---AACTCAAGGCGGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020200000000
.GCGCGACGAGGAGATTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
.................GGCG---AACTCAAGGCGGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
.............GATTGGCG---AACTCAAGGCGGAACGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...............TTGGCG---AACTCAAGGCGGAACGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCCCGGCATGAGCG......1811.0010100000000
..........GGAGATTGGCG---AACTCAAGGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000010
..............ATTGGCG---AACTCAAGGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................TGGCG---AACTCAAGGCGGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGGAGCATCTGGAGTGCCTGGT.....................2611.0010100000000
..................................GGAACGCAATAACACCAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AGCGCGACGAGGAGATTGGCG---AACTCAAGGCGGAACGCAATAACACCAGGGTAAGAAGCT-------------------------------------------------------------------------------TTGGGGATTCCA-------------------------------------------------------------------------CCCCCCGCCG-TGAA----------GTGCATCCCAAATCCC-----------------------------------------------------------------------------AA------TCCATTGCTAAATGTGGG--------------------------TCT-------------------------------------------------------------------------------------CTCT------TTCCCGCAGCTTCTACTGGAGCATCTGGAGTGCCTGGTGTCCCGGCATGAGCGCTCCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.GCGCGACGAGGAGATTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002001001
..................................GGAACGCAATAACACCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGGAGCATCTGGAGTGCCTGGT.....................2611.001100000
....CGACGAGGAGATTGGCG---AACTCAAGGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGTGCCTGGTGTCC.................2011.001010000
droWil2
AACGCGATGAGGAAATTGGCG---AGTTGAAAGCAGAACGCAATAATACCAGAGTAAGAAATCGGGAAAGTCCCGATTTTAATTATCTTTTAAATAGAGCTAAACGAGTGTCATTGTCTGAATATGCGACAGTTTTATTGCTTAGAGAT----GTTTTGATCTTTACAACTTATTGCACTAGTACAACATTCTAATCTTAAACAGAACATGTCATCGCAAAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGCAATTGC---AACAAAAGCTGTATAAATTATAACTAATGAAT---CTTAATGAATCTGTGT-----------------CGCCTTTTTATG-----GTCT------TTTTTTTAGCTTCTCCTAGAGCATCTGGAATGCTTGGTATCCCGACATGAGCGCTCCCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................GTTGAAAGCAGAACGCAATAATACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGAGCATCTGGAATGCTTGGTATC..................2711.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------TTTTTTTAGCTTCTCCTAGAGCC....................................2511.00100001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTATCCCGACATGAGCGC.....2111.00100010
....................G---AGTTGAAAGCAGAACGCAATAATACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
droVir3
AACGGGACGAGGAAATTGGTG---AGCTCAAAGCGGAACGCAACAATACGCGGGTAAGCGTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CTAA----------GC-TAC----------------------------------------------------------------------AACAATATCT-------GA------TAAATCTATAAAAGTT-G--------------------------TCT-------------------------------------------------------------------------------------ATTC------TTATTACAGCTACTGCTGGAGCATTTGGAGTGCTTGGTGTCGCGCCATGAGCGTTCCCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAGTGCTTGGTGTCGCGC..............2311.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGTCGCGCCATGAGC.......1911.001000000000000000000000100000000000000000000000000000000000000000
.ACGGGACGAGGAAATTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
..............ATTGGTG---AGCTCAAAGCGGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGTCGCGCCATGAGCGTT....2211.001000000000000000000000000000000000000100000000000000000000000000
AACGGGACGAGGAAATTGGTG---AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATTTGGAGTGCTTGGTGTCGC................2411.001000000000000000100000000000000000000000000000000000000000000000
.........................GCTCAAAGCGGAACGCAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
AACGTGATGAAGAAATCGGAG---AGCTCAAAGCAGAGCGCAACAATACGCGGGTACGCTGCA------------------------------------------------------------------------------------------------------------------------------------------------CATGG-----------------------CA-TG----------------------------------------------------------------------------------------AGCTATATAT-------GG--TAGAAATCC------------------------------------------AACTAAATCT------------------------------------------------------------------------------GTATATATTGTTATAGCTGCTGCTGGAACATTTGGAGTGCTTGGTGTCGCGTCATGAGCGATCGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................AGCAGAGCGCAACAATACGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........GAAATCGGAG---AGCTCAAAGCAGAGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droGri2
AACGCGACGAGGAGATTGGTG---AACTCAAGGCTGAACGCAACAACACGCGGGTAAGCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCC--------------------------------------------------------------------AACAATATCCAAATCATAATCCCAAAACCCGACTAATTATGCG--------------------------AT------------------------------------------------------------------------------------------ACTCGTTATATGCAGCTCCTACTTGAGCACTTGGAGTGTCTGGTTTCGCGACATGAACGCTCGCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:30 PM