ID:

dan_461

 Coordinate:

scaffold_12916:4916-4979 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.9

Flybase annnotation

CDS [Dana\GF14949-cds]; CDS [Dana\GF14949-cds]; exon [dana_GLEANR_15715:10]; exon [dana_GLEANR_15715:11]; intron [Dana\GF14949-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------##################################################
AGGAGCCATTATGAGTGCGCTTAGCGATACGGAAATTCAGCGGGAGATTGGTAAGGATCGTGGTTATTATATTATTTTGTCACAGACTAAGTTCTTTATGTTCTCTTGAAATAGGAATTAGCAATCCACTGCATAGGCTCAAATTGCGTTTAGCCATACAGGAG
**************************************************(((((((...(((((...(((......)))....)))))...))))))).....************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body		 V106
head
 V055
head
.....................TAGCGATACGGAAATTCAGCGGGAGA..................................................................................................................... 26 0 1 104.00 104 60 38 5 0 1 0
.....................TAGCGATACGGAAATTCAGCGGGAGAT.................................................................................................................... 27 0 1 66.00 66 47 16 1 2 0 0
.................................................................................................................................TGCATAGGCTCAAATTGCGTTTAGC.......... 25 0 1 50.00 50 21 11 17 0 0 1
.....................TAGCGATACGGAAATTCAGCGGGAG...................................................................................................................... 25 0 1 35.00 35 17 14 4 0 0 0
..............................................................................................................................CACTGCATAGGCTCAAATTGCGTTTAGC.......... 28 0 1 32.00 32 22 7 3 0 0 0
.....................TAGCGATACGGAAATTCAGCGGGA....................................................................................................................... 24 0 1 25.00 25 9 15 1 0 0 0
...............................................................................................................................ACTGCATAGGCTCAAATTGCGTTTAGC.......... 27 0 1 16.00 16 9 5 2 0 0 0
.................................................................................................................................TGCATAGGCTCAAATTGCGTTTAGCC......... 26 0 1 15.00 15 2 13 0 0 0 0
...........................TACGGAAATTCAGCGGGAGATTGG................................................................................................................. 24 0 1 15.00 15 9 5 1 0 0 0
............................................................................................................................TCCACTGCATAGGCTCAAATTGCGTT.............. 26 0 1 14.00 14 13 1 0 0 0 0
.....................TAGCGATACGGAAATTCAGCGGGAGATT................................................................................................................... 28 0 1 13.00 13 12 0 0 1 0 0
.....................TAGCGATACGGAAATTCAGCGGG........................................................................................................................ 23 0 1 11.00 11 6 3 2 0 0 0
......................AGCGATACGGAAATTCAGCGGGAGAT.................................................................................................................... 26 0 1 7.00 7 6 0 1 0 0 0
.............................................................................................................................CCACTGCATAGGCTCAAATTGCGTT.............. 25 0 1 6.00 6 4 2 0 0 0 0
..............................................................................................................................CACTGCATAGGCTCAAATTGCGTT.............. 24 0 1 6.00 6 5 0 1 0 0 0
...........................TACGGAAATTCAGCGGGAGATTG.................................................................................................................. 23 0 1 6.00 6 6 0 0 0 0 0
...........................TACGGAAATTCAGCGGGAGATT................................................................................................................... 22 0 1 6.00 6 3 3 0 0 0 0
.........................GATACGGAAATTCAGCGGGAGATTG.................................................................................................................. 25 0 1 6.00 6 4 2 0 0 0 0
......................................................................................................................TAGCAATCCACTGCATAGGCTCAAAT.................... 26 0 1 6.00 6 5 0 1 0 0 0
.........................GATACGGAAATTCAGCGGGAGA..................................................................................................................... 22 0 1 5.00 5 5 0 0 0 0 0
..................................................GTAAGGATCGTGGTTATTATATTATT........................................................................................ 26 0 1 5.00 5 3 2 0 0 0 0
.....................TAGCGATAGGGAAATTCAGCGGGAGA..................................................................................................................... 26 1 1 5.00 5 5 0 0 0 0 0
.................................................................................................................................TTCATAGGCTCAAATTGCGTTTAGC.......... 25 1 1 5.00 5 0 5 0 0 0 0
........................CGATACGGAAATTCAGCGGGAGATT................................................................................................................... 25 0 1 5.00 5 1 2 0 0 2 0
.................................................................................................................................TGCATAGGCTCAAATTGCGTTTAGCCA........ 27 0 1 5.00 5 5 0 0 0 0 0
..................................................................................................TGTTCTCTTGAAATAGGAATTAGCAATC...................................... 28 0 1 5.00 5 3 2 0 0 0 0
......................AGCGATACGGAAATTCAGCGGGAG...................................................................................................................... 24 0 1 4.00 4 1 3 0 0 0 0
..................................................GTAAGGATCGTGGTTATTATATTAT......................................................................................... 25 0 1 4.00 4 2 2 0 0 0 0
........................CGATACGGAAATTCAGCGGGAGA..................................................................................................................... 23 0 1 4.00 4 3 1 0 0 0 0
.........................GATACGGAAATTCAGCGGGAGATTGG................................................................................................................. 26 0 1 4.00 4 3 1 0 0 0 0
............................................................................................................................TCCACTGCATAGGCTCAAATTGCGTTTA............ 28 0 1 4.00 4 3 0 0 1 0 0
......................AGCGATACGGAAATTCAGCGGGAGA..................................................................................................................... 25 0 1 4.00 4 2 2 0 0 0 0
.................................................................................................................................TGCATAGGCTCAAATTGCGTTTAGCCAT....... 28 0 1 3.00 3 2 1 0 0 0 0
................................................................................................................TGGAATTAGCAATCCACTGCATAGGCT......................... 27 1 1 3.00 3 0 3 0 0 0 0
............................................................................................................................TCCACTGCATAGGCTCAAATTGCGTC.............. 26 1 1 3.00 3 0 3 0 0 0 0
.....................TAGCGATAGGGAAATTCAGCGGGAGAT.................................................................................................................... 27 1 1 3.00 3 3 0 0 0 0 0
..................................................................................................TGTTCTCTTGAAATAGGAATTAGC.......................................... 24 0 1 3.00 3 2 1 0 0 0 0
................................................................................................................TGGAATTAGCAATCCACTGCATAGGC.......................... 26 1 1 3.00 3 0 3 0 0 0 0
.................................................................................................................................TTAATAGGCTCAAATTGCGTTTAGCC......... 26 2 1 3.00 3 0 3 0 0 0 0
.....................TAGCGATACGGAAATTCAGCGGGAGAC.................................................................................................................... 27 1 1 3.00 3 0 3 0 0 0 0
...........................TACGGAAATTCAGCGGGAGATTGGAAT.............................................................................................................. 27 2 1 3.00 3 2 0 0 1 0 0
..............................................................................................................................CACTGCATAGGCTCAAATTGCGTTTAG........... 27 0 1 3.00 3 3 0 0 0 0 0
..................................................GTAAGGATCGTGGTTATTATATTATTT....................................................................................... 27 0 1 3.00 3 1 2 0 0 0 0
.....................TGGCGATACGGAAATTCAGCGGGAGA..................................................................................................................... 26 1 1 3.00 3 0 3 0 0 0 0
................................................................................................................................CTGCATAGGCTCAAATTGCGTTTAGC.......... 26 0 1 2.00 2 2 0 0 0 0 0
...............................................................................................................TTGGAATTAGCAATCCACTGCATAGGC.......................... 27 1 1 2.00 2 2 0 0 0 0 0
......................AGCGATACGGAAATTCAGCGGGA....................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0
.................................................................................................................................TGCATAGGGTCAAATTGCGTTTAGC.......... 25 1 1 2.00 2 2 0 0 0 0 0
....................TTAGCGATACGGAAATTCAGC........................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0
..............................................................................................................................CACTGCATAGGCTCAAATTGCGTTT............. 25 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................TCCACTGCATAGGCTCAAATTGCGTTT............. 27 0 1 2.00 2 1 1 0 0 0 0
...............TGCGCTTAGCGATACGGAAATTCAGC........................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0
.............................................................................TGTCACAGACTAAGTTCTTTATGTTCTCT.......................................................... 29 0 1 2.00 2 1 1 0 0 0 0
.......................GCGATACGGAAATTCAGCGGGAGATT................................................................................................................... 26 0 1 2.00 2 1 0 1 0 0 0
...........................TACGGAAATTCAGCGGGAGAT.................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0
.....................TACCGATACGGAAATTCAGCGGGAGAT.................................................................................................................... 27 1 1 2.00 2 0 2 0 0 0 0
..............................................................................................................................CACTGCATAGGCTCAAATTGCGTTTA............ 26 0 1 2.00 2 1 1 0 0 0 0
................................................................................................................TTGAATTAGCAATCCACTGCATAGGCT......................... 27 2 1 2.00 2 0 2 0 0 0 0
.................................................................................................................................TGCATAGGCTCAAATTGCGTTTAG........... 24 0 1 2.00 2 1 0 1 0 0 0
..............................................................................................................................CACTGCATAGGCTCAAATTGCGT............... 23 0 1 2.00 2 2 0 0 0 0 0
.......................GCGATACGGAAATTCAGCGGGAGATTG.................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0
..................................................................................................TGTTCTCTTGAAATAGGAATTAGCA......................................... 25 0 1 2.00 2 1 1 0 0 0 0
......................................................................................................................TAGCAATCCACTGCATAGGCTCAAA..................... 25 0 1 2.00 2 2 0 0 0 0 0
.................................................................................................................................TTCATAGGCTCAAATTGCGTTTAGCC......... 26 1 1 2.00 2 0 2 0 0 0 0
.....................TAGCGATACGGAAATTCGGCGGGAGAT.................................................................................................................... 27 1 1 2.00 2 1 1 0 0 0 0
..............................................................................................................................CACTGCATAGGCTCAAATTGCGTTTAGCC......... 29 0 1 2.00 2 1 1 0 0 0 0
.....................................................................................................................................TAGGCTCAAATTGCGTTTAGCCATAC..... 26 0 1 2.00 2 1 1 0 0 0 0
...............................................................................................................................ACTGCATAGGCTCAAATTGCGTTTAGCC......... 28 0 1 2.00 2 0 2 0 0 0 0
........................CGATACGGAAATTCAGCGGGAGATTG.................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
.........................GATACGGAAATTCAGCGGGAGATT................................................................................................................... 24 0 1 2.00 2 1 0 0 1 0 0
...................................TTCAGCGGGAGATTGGTAAGGATC......................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.............................................................................TGTCACAGACTAAGTTCTTTATGTTCT............................................................ 27 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................TTGAATTAGCAATCCACTGCATAGGCTC........................ 28 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................................TTGAAATAGGAATTAGCAATC...................................... 21 0 1 1.00 1 0 1 0 0 0 0
................................AAATTCAGCGGGAGATTGGTAAGG............................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0
...................................TTCAGCGGGAGATTGGTAAGGATCG........................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GATTGGAATTAGCAATCCACTGCA............................... 24 2 1 1.00 1 0 1 0 0 0 0
...................................TTCAGCGGGAGATTGGTAAGGAT.......................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
......................AGAGATACGGAAATTCAGCGGGAG...................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
....................TTAGCGATACGGAAATTCAGCGGGAGATT................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TTAATAGGCTCAAATTGCGTTTAGC.......... 25 2 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................GTATGCATAGGCTCAAATTGCGTTTAGC.......... 28 3 1 1.00 1 1 0 0 0 0 0
......................................................................................................................AAGCAATCCACTGCATAGGCTCAAA..................... 25 1 1 1.00 1 1 0 0 0 0 0
.....................TAGCGATAAGGAAATTCAGCGCGAGA..................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................ACTGCATAGGCTCAAATTGCGTTTATC.......... 27 1 1 1.00 1 0 0 1 0 0 0
.................................AATCCAGCGGGAGATTGGTAAGGAT.......................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................AGTGCATAGGCTCAAATTGCGTTTAGCC......... 28 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................................TCCACTGCATAGGCTCAAATTG.................. 22 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................TCCACTGCTTAGGCTCAAATTGCG................ 24 1 1 1.00 1 1 0 0 0 0 0
................GCGCTTAGCGATACGGAAATTCAGCG.......................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0
.........................GATACGGAAATTCAGCGGGAGAT.................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
.......................GCGATACGGAAATTCAGCGGGA....................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
............................................................................TTGTCACAGACTAAGTTCTTTATGTTC............................................................. 27 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................TAGGAATTAGCAATCCACTGCATAGGCTC........................ 29 0 1 1.00 1 1 0 0 0 0 0
............................................................................TTGTCACAGACTAAGTTCTTTA.................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................GTCACAGACTAAGTTCTTTATGTTCTCT.......................................................... 28 0 1 1.00 1 1 0 0 0 0 0
............................ACGGAAATTCAGCGGGAGA..................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..................................................GTAAGGATCGTGGTTATTATATTA.......................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0
..........................................................................................................................................TCAAATTGCGTTTAGCCATACAGGAG 26 0 1 1.00 1 0 1 0 0 0 0
..................................ATTCAGCGGGAGATTGGTAAGGATCG........................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................AGGAATTAGCAATCCACTGCATAGGCTC........................ 28 0 1 1.00 1 0 1 0 0 0 0
...................CTTAGCGATACGGAAATTCAGCGGG........................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................TGTTCTCTTGAAATAGGAATTAGCAA........................................ 26 0 1 1.00 1 0 1 0 0 0 0
...........................TACGGAAATTCAGCGGGAGATTGGTA............................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGGATCGTGGTTATTATATT........................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................ATCATAGGCTCAAATTGCGTTTAGCC......... 26 2 1 1.00 1 0 1 0 0 0 0
.................................................GGTTAGGATCGTGGTTATTATATTATT........................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0
.................................AATTCAGCGGGAGATTGGTAAGGATC......................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
....................TTAGCGATACGGAAATTCAGCGGGAGAT.................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................ATAGGCTCAAATTGCGTTTAGC.......... 22 0 1 1.00 1 0 1 0 0 0 0
.................................AATTCAGCGGGAGATTGGTAAGG............................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0
.....................TAGCGATAAGGAAATTCAGCGGGAGATT................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
.....................TACCGATACGGAAATTCAGCGGGA....................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
..................................ATTCAGCGGGAGATTGGTAAGGAT.......................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TTGAATTAGCAATCCACTGCATAGTC.......................... 26 3 1 1.00 1 0 1 0 0 0 0
................................................................................CACAGACTAAGTTCTTTATGTTCT............................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.....................TAGCGATATGGAAATTCAGCGGGAGAT.................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
..........................................................................TTTTGTCACAGACTAAGTTCTTTATG................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
...............TGCGCTTAGCGATACGGAAATTCAGCG.......................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0
.....................TAGCGATACGGAAATTCCGCGGGA....................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
.....................TAGCGATACGGAAATTCAGCTGGAGA..................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0
...........................TACGGAAAGTCAGCGGGAGATTG.................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGATCGTGGTTATTATATTATTT....................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
...........................TACGGAAATTCAGCGGGAGATTGGA................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
.....................TAGCGATACGGAAATTCAGCGGGAGT..................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................................TGAAATAGGAATTAGCAATCCACTGCA............................... 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TTGGAATTAGCAATCTACTGCATAGGC.......................... 27 2 1 1.00 1 0 1 0 0 0 0
...................................TTCAGCGGGAGATTGGTAAGG............................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...................................................TAAGGATCGTGGTTATTTAA............................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0
..................................................................................................................GAATTAGCAATCCACTGCATAGGCTCA....................... 27 0 1 1.00 1 1 0 0 0 0 0
.....................TAGCGATACGGAAATTCAGCGGT........................................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
................................................................................................................TGGAATTAGCAATTCACTGTATAGGCTC........................ 28 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................TAGGCTCAAATTGCGTTTAGC.......... 21 0 1 1.00 1 0 1 0 0 0 0
.....................TAGTGATACGGAAATTCATCGGGA....................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
......................................................................................................................TAGCAATCCACTGCATAGGC.......................... 20 0 1 1.00 1 0 1 0 0 0 0
...............................GAAATTCAGCGGGAGATTGGTAAGG............................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0
........................CGATACGGAAATTCAGCGGGA....................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.....................TACCGATACGGAAATTCAGCGGGAGA..................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
...........................TACGGAAATTCAGCGGGAGATTGGTAAG............................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTTCTCTTGAAATAGGAATTAGCAATCC..................................... 29 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TTGGAATTAGCAATCCACTGCATAGG........................... 26 1 1 1.00 1 0 1 0 0 0 0
.....................TGGCGATACGGAAATTCAGCGGGATA..................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................TGCATGGGCTCAAATTGCGTTTAGC.......... 25 1 1 1.00 1 0 1 0 0 0 0
.....................TTGCGATACGGAAATTCAGCGGGA....................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................TGCTTAGGCTCAAATTGCGTTTAGCCT........ 27 2 1 1.00 1 0 1 0 0 0 0
...............TTCGCTTAGCGATACGGAAATTCAGC........................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.....................TAGCGATACGGAAATTCATCGGGAGAT.................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................TGCAGAGGCTCAAATTGCGTTGAGC.......... 25 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................ACTGCATACGCTCAAATTGCGTTTAGCCA........ 29 1 1 1.00 1 1 0 0 0 0 0
.....................TAGCGATATGGAAATTCAGCGGGAGATT................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TTGGAATTAGCAATCCACTGCATAGGCTC........................ 29 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................TAGGAATTAGCAATCCACTGCATAGGCT......................... 28 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................TCCACTGCATAGGCTCAAATTGCGT............... 25 0 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGGATGGTGGTTATTATATTATT........................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
.....................TAGCGATAGGGAAATTCAGCGGGAGATT................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................AGCAATCCACTGCATAGGCTCAAA..................... 24 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TGCATAGGCTCAAATTGCGTTTAAC.......... 25 1 1 1.00 1 0 1 0 0 0 0
...........................TACGGAAAGTCAGCGGGAGATTGG................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TGCATAGGCTCAAATTGCTTTTAGC.......... 25 1 1 1.00 1 0 0 1 0 0 0
...............TGCGCTTAGCGATACGGAAATTCAG............................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TGCATAGGCTCGCATTGCGTTTAGC.......... 25 2 1 1.00 1 0 0 1 0 0 0
...................................TTCAGCGGGAGATTGGTAAGGATCGC....................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
............................................................................TGGTCACAGACTAAGTTCTTTATGTT.............................................................. 26 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................TGAATAGGCTCAAATTGCGTTTAGC.......... 25 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................CCACTGCATAGGCTCAAATTGCGTTT............. 26 0 1 1.00 1 1 0 0 0 0 0
................GCGCTTAGCGATACGGAAATTCAGC........................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................TTCATAGGCTAAAATTGCGTTTAGCC......... 26 2 1 1.00 1 0 1 0 0 0 0
.....................TAGCGATACGGACATTCAGCGGGAGA..................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
..........................ATACGGAAATTCAGCGGGAGATT................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
.......................GCGATACGGAAATTCAGCGGGAGA..................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TGCAGAGGCTCAAATTGCGTTTAGC.......... 25 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................TGTACTCTTGAAATAGGAATTAGCAAT....................................... 27 1 1 1.00 1 0 1 0 0 0 0
....................CTAGCGATACGGAAATTCAGCGGGA....................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................TGGAATTAGCAATCCACTGCATAGGCTC........................ 28 1 1 1.00 1 0 1 0 0 0 0
..................TCTTAGCGATACGGAAATTCAGCGGG........................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................GAAATAGCAATCCACTGCATAGGCC......................... 25 2 1 1.00 1 0 1 0 0 0 0
.....................TAGCGATACGGAAATTCAGCGGGGGAT.................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................TCCACTGCGTAGGCTCAAATTGCGTT.............. 26 1 1 1.00 1 1 0 0 0 0 0
.....................................................TGGATCGTGGTTATTATATTATTTTGC.................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0
.......................GCGATACGGAAATTCAGCGGGAGATC................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.........................GATACGGAAATTCAGCGGGAGATTGGT................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0
.........................GATACGGAAATTCAGCGGGAG...................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................CAAATTGCGTTTAGCCATACAGGAG 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................TGTCACAGACTAAGTTCTTTATGTTC............................................................. 26 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................TGTTCTCTGGAAATAGGAATTAGCAATCC..................................... 29 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TGCATAGGCTCAAATTGCGTTTATC.......... 25 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................TGCATAGACTCAAAATGCGTTTAGC.......... 25 2 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................ACTGCATAGGCTCAGATTGCGTTTAGC.......... 27 1 1 1.00 1 0 1 0 0 0 0
.................................................................................ACAGACTAAGTTCTTTATGTTCTCT.......................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TAGGAATTAGCAATCCACTGCATAGGC.......................... 27 0 1 1.00 1 0 1 0 0 0 0
.......................GCGTTACGGAAATTCAGCGGGAGATT................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
........................CTATACGGAAATTCAGCGGGAGA..................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.....................TTGCGATACGGAAATTCAGCGGGAGA..................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
...............TGAGCTTAGCGATACGGAAATTCAGC........................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................................GGATTAGCAATCCACTGCATAGGCTC........................ 26 1 1 1.00 1 0 1 0 0 0 0
.....................TAGCGATACGGAAATTCAGCGG......................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0
........................CTATACGGAAATTCAGCGGGAGAT.................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................................TGGCAATCCACTGCATAGGCTCAAAT.................... 26 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................TTTTCTCTTGAAATAGGAATTAGCAAT....................................... 27 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................TGCATAGGGTCAAATTGCGTTTAG........... 24 1 1 1.00 1 1 0 0 0 0 0
.........................GGTACGGAAATTCAGCGGGAGATTGG................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................TGCATAGGCTCAAATTGCGTTTAGCCATA...... 29 0 1 1.00 1 1 0 0 0 0 0
.....................TAGCGATAAGGAAATTCAGCGGGAGA..................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................CACTGCATGGGCTCAAATTGCGTTTAGC.......... 28 1 1 1.00 1 1 0 0 0 0 0
...........................................................................TTTGTCACAGACTAAGTTCTTTATGT............................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...........................TACGGAAATTCAGCGGGAG...................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
.....................TAGCGATACGGAAATTCAGCGGGAA...................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................TCTGCATAGGCTCAAATTGCGTTTAGC.......... 27 1 1 1.00 1 0 1 0 0 0 0
.....................TACCGATACGGAAATTCAGCGGGAG...................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
................................................................................CACAGACTAAGTTCTTTATGTTCTCT.......................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...........................TACGGAAATTCAGCGGGAGATTGGAA............................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.........................GACACGGAAATTCAGCGGGAGA..................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
......CATTATGAGTGCGCTTAGCGATACGGA................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................TCCACTGCATAGGCTCAAATTGGGTT.............. 26 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TGCATAGGCTCACATTGCGTTTAGC.......... 25 1 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................CCACTGCATAGGCTCAAATTGCGTTTAGC.......... 29 0 1 1.00 1 1 0 0 0 0 0
.....................TAGCGATACGGAAATTCAGCGGGAC...................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................................TAGCAATCGACTGCATAGGCTCAAAT.................... 26 1 1 1.00 1 1 0 0 0 0 0
......................ATCGATACGGAAATTCAGCGGGAGA..................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................ATTGGAATTAGCAATCCACTGCATAGGCT......................... 29 1 1 1.00 1 0 0 0 1 0 0
.............................CGGAAATTCAGCGGGAGATTGGCG............................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...........................TACGGAAATTCAGCGGGAGA..................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.....................TGGCGATACGGAAATTCAGCGGGA....................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.....................TAGTGATACGGAAATTCAGCGGGAGA..................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.....................TAGCGATATGGAAATTCAGCGGGAG...................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.............................CGGAAATTCAGCGGGAGATTGGTAAG............................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................ATTAGCAATCCACTGCATAGGCTC........................ 24 0 1 1.00 1 0 1 0 0 0 0
.....................TAGCGATACCGAAATTCCGCGGGA....................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................TGCATAGGCTCAAATTGCGTTT............. 22 0 1 1.00 1 1 0 0 0 0 0
.........................GATACGGAGATTCAGCGGGAGA..................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..GAGCCATTATGAGTGCGCT............................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0
................................................................................................................................CTGCATAGGCTCAAATTGCGTTTAGCCA........ 28 0 1 1.00 1 1 0 0 0 0 0
.....................TAGCGATACGGAAATTCAGCGGTAGATC................................................................................................................... 28 2 1 1.00 1 0 1 0 0 0 0
.......................GCGATACGGAAATTCAGCGGGAGAT.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..................................................GCAAGGATCGTGGTTATTATATTATTT....................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
................................................................................CACAGACTAAGTTCTTTATGTTCTCTT......................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.......ATTATGAGTGCGCTTAGCGATACGGAA.................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...................CTTAGCGATACGGAAATTCAGCGGGA....................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...............................................................................TCACAGACTAAGTTCTTTATGTTCTCT.......................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................TTCATAGGCTCAAATTGCGTTTAGCCA........ 27 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................AGCAATCCACTGCATAGGCTCAAAT.................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GATTGGAATTAGCAATCCACTGCATAGG........................... 28 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................TTAGCAATCCACTGCATAGGCTCAAAT.................... 27 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................GAATTAGCAATCCACTGCATAGGCTC........................ 26 0 1 1.00 1 1 0 0 0 0 0
...........................TACGGAAATTCAGCGGGAGATTGTT................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TATCACAGACTGAGTTCTTGAT................................................................. 22 3 2 0.50 1 0 0 0 0 0 1
.............................................................................TATCACAGACTGAGTTCTTTCT................................................................. 22 3 2 0.50 1 0 0 0 0 0 1
.................................................GGTAAGGATCGTGGTCAA................................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0
.............................................................................................................................................AATTGCGTCTAGCCCTACTG... 20 3 4 0.25 1 0 0 0 0 0 1
....................................................................ATATTGTCTTGTCACATACTA........................................................................... 21 3 5 0.20 1 0 0 0 0 0 1
..............................................ATTGGTAACGATCTTGGT.................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0
............GAGAGTGCTTGGCGATAC...................................................................................................................................... 18 3 20 0.15 3 0 0 1 0 2 0
.............................................................................CGTCACAGACTTATTTCTTT................................................................... 20 3 18 0.06 1 0 0 0 0 0 1
.............................................GCTTGGTAAGGATGGTGAT.................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
.........................................................................................................TTGAAATTGGAATGAGCA......................................... 18 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

TCCTCGGTAATACTCACGCGAATCGCTATGCCTTTAAGTCGCCCTCTAACCATTCCTAGCACCAATAATATAATAAAACAGTGTCTGATTCAAGAAATACAAGAGAACTTTATCCTTAATCGTTAGGTGACGTATCCGAGTTTAACGCAAATCGGTATGTCCTC
************************************************************(((((((...(((((...(((......)))....)))))...))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V106
head
 V105
male body
.....................................GTCGCCCTCTAACCATTCCTAGC........................................................................................................ 23 0 1 35.00 35 35 0 0 0 0
.................................................................................................................CCTTAATCGTTAGGTGACGTATCCGA......................... 26 0 1 14.00 14 13 1 0 0 0
....................................AGTCGCCCTCTAACCATTCCTAGC........................................................................................................ 24 0 1 10.00 10 10 0 0 0 0
...................................AAGTCGCCCTCTAACCATTCCTAGC........................................................................................................ 25 0 1 7.00 7 7 0 0 0 0
.................................................................................TGTCTGATTCAAGAAATACAAGAGAAC........................................................ 27 0 1 5.00 5 4 1 0 0 0
...................................................................................TCTGATTCAAGAAATACAAGAGAAC........................................................ 25 0 1 5.00 5 2 2 0 1 0
.................................TTAAGTCGCCCTCTAACCATTCCTAGC........................................................................................................ 27 0 1 5.00 5 3 2 0 0 0
......................................TCGCCCTCTAACCATTCCTAGC........................................................................................................ 22 0 1 5.00 5 5 0 0 0 0
.....................................................................................TGATTCAAGAAATACAAGAGAAC........................................................ 23 0 1 5.00 5 2 3 0 0 0
..................................................................................GTCTGATTCAAGAAATACAAGAGAAC........................................................ 26 0 1 4.00 4 4 0 0 0 0
....CGGTAATACTCACGCGAATCGCTAT....................................................................................................................................... 25 0 1 4.00 4 1 3 0 0 0
...................................................................................................................TTAATCGTTAGGTGACGTATCCGA......................... 24 0 1 4.00 4 4 0 0 0 0
..................................TAAGTCGCCCTCTAACCATTCCTAGC........................................................................................................ 26 0 1 4.00 4 3 1 0 0 0
.....GGTAATACTCACGCGAATCGCTATGC..................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0
......GTAATACTCACGCGAATCGCTATGCCT................................................................................................................................... 27 0 1 3.00 3 2 1 0 0 0
.....GGTAATACTCACGCGAATCGCTAT....................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0
.......................................CGCCCTCTAACCATTCCTAGC........................................................................................................ 21 0 1 3.00 3 2 1 0 0 0
.........................................................................................................................GTTAGGTGACGTATCCGA......................... 18 0 1 3.00 3 3 0 0 0 0
.....................................GTCGCCCTCTAACCATTCCTAG......................................................................................................... 22 0 1 2.00 2 2 0 0 0 0
........................................................................................................................CGTTAGGTGACGTATCCGAGTTT..................... 23 0 1 2.00 2 0 1 1 0 0
.............TCACGCGAATCGCTATGCCTTTAAG.............................................................................................................................. 25 0 1 2.00 2 0 2 0 0 0
...TCGGTAATACTCACGCGAATCGCTAT....................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0
....................................................................................CTGATTCAAGAAATACAAGAGAAC........................................................ 24 0 1 2.00 2 2 0 0 0 0
.........................................................................................TCAAGAAATACAAGAGAACTTTATCCT................................................ 27 0 1 2.00 2 1 1 0 0 0
.....GGTAATACTCACGCGAATCGCTATG...................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0
...................................................................................CCTGATTCAAGAAATACAAGAGAAC........................................................ 25 1 1 2.00 2 0 2 0 0 0
................................................................................................................TCCTTAATCGTTAGGTGACGTATCCGA......................... 27 0 1 2.00 2 2 0 0 0 0
..................................................................................................................CTTAATCGTTAGGTGACGTATCCGA......................... 25 0 1 2.00 2 2 0 0 0 0
..........TACTCACGCGAATCGCTATGC..................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0
...............................CTTTAAGTCGCCCTCTAACCATTCCTAGC........................................................................................................ 29 0 1 2.00 2 2 0 0 0 0
........................................................................................................................CGTTAGGTGACGTATCCGAGTTTAACGC................ 28 0 1 2.00 2 2 0 0 0 0
...............................................................................................................................TGACGTATCCGAGTTTAACGCAAAT............ 25 0 1 2.00 2 1 1 0 0 0
............................................................................................................................AGGTGACGTATCCGAGTTTAACGCAAAT............ 28 0 1 2.00 2 2 0 0 0 0
........................................GCCCTCTAACCATTCCTAGCACCA.................................................................................................... 24 0 1 2.00 2 1 1 0 0 0
..................................AAAGTCGCCCTCTAACCATTCCTAGC........................................................................................................ 26 1 1 2.00 2 2 0 0 0 0
................................................................................................................TCCTTAATCGTTAGGTGACGTATCCGAG........................ 28 0 1 2.00 2 2 0 0 0 0
.........ATACTCACGCGAATCGCTATGCCTGT................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0
................................................................................................................AATTTAATCGTTAGGTGACGTATCCGA......................... 27 3 1 1.00 1 1 0 0 0 0
...................GAATCGCTATGCCTTTAAGTCGCCCT....................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
......................................TCGCCCTCTAACCATTCCTAGG........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
...........................ATGCCTTTAAGTCGCCCTCTAACCAT............................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.............TCACGCGAATCGCTATGCCTT.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..................................................................................GTCTGATTCAAGAAATACAAGAGAA......................................................... 25 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................AATCGTTAGGTGACGTATCCGA......................... 22 0 1 1.00 1 0 0 0 1 0
.......................................................................................................................TCGTTAGGTGACGTATCCGAGTGT..................... 24 1 1 1.00 1 0 1 0 0 0
...........ACTCACGCGAATCGCTATGCCTTTAA............................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
......................................................................................................................ATCGTTAGGTGACGTATCCGAGTT...................... 24 0 1 1.00 1 1 0 0 0 0
...........ACTCACGCGAATCGCTATGCG.................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.................................................................................TGTCTGATTCAAGAAATACAAGAGA.......................................................... 25 0 1 1.00 1 1 0 0 0 0
.CCTCGGTAATACTCACGCGAATCGCTAT....................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0
......................................................................................................................ATCGTTAGGTGGCGTATCCG.......................... 20 1 1 1.00 1 1 0 0 0 0
.....................................................TCCTAGCACCAATAATATAATAAA....................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.....................................................................................TGATTCAAGAAATACAAGAGAGC........................................................ 23 1 1 1.00 1 0 1 0 0 0
..........................................................................................................................TTAGGTGACGTATCCGAGTTTAACGCAA.............. 28 0 1 1.00 1 1 0 0 0 0
...................................AAGTCGCCCTCTAACCATTCCTAG......................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
................................................................................................................................GACGTATCCGAGTTTAACGCAAAT............ 24 0 1 1.00 1 0 1 0 0 0
.............................................................................................................................GGTGACGTATCCGAGTTTAACGCAA.............. 25 0 1 1.00 1 1 0 0 0 0
............CTCACGCGAATCGCTATGCCTTT................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0
...............................................................................................................ATCCTTAATCGTTAGGTGACGTATCCGA......................... 28 0 1 1.00 1 1 0 0 0 0
.....................................GTCGCCCTCTAACCGTTCCTAGC........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0
.................................................................................................................CCTTAATCGTTAGGTGACGTATCCGAG........................ 27 0 1 1.00 1 1 0 0 0 0
....................................AGTCGCCCTCTAACCGTTCCTAGC........................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
.......................................CGCCCTCTAACCATTCCTAGCAC...................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
...................................................................................TCTGATTCAAGAAATACAAGAGAA......................................................... 24 0 1 1.00 1 0 1 0 0 0
........................................................................................................................CGTTAGGTGACGTATCCGAGT....................... 21 0 1 1.00 1 0 1 0 0 0
............CTCACGCGAATCGCTATGCCTTTAAGT............................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................TAGGTGACGTATCCGAGTTTAACGCA............... 26 0 1 1.00 1 1 0 0 0 0
.........ATACTCACGCGAATCGCTGT....................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0
....................................................TTCCTAGCACCAATAATATAATAAAA...................................................................................... 26 0 1 1.00 1 0 1 0 0 0
..................................................................................................................TTTAATCGTTAGGTGACGTATCCGAGT....................... 27 1 1 1.00 1 1 0 0 0 0
.......................................CGCCCTCTAACCATTCCTA.......................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................AATCGTTAGGTGACGTATCCGAG........................ 23 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................TAGGTGACGTATCCGAGTTTAACGCAAA............. 28 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................TCGTTAGGTGACGTATCCAA......................... 20 1 1 1.00 1 0 1 0 0 0
................................................................................TTGTCTGATTCAAGAAATACAAGAGAAC........................................................ 28 1 1 1.00 1 1 0 0 0 0
......TTAATACTCACGCGAATCGCTATGC..................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.............TCACGCGAATCGCTATGCCTTTAAGT............................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0
..........................................CCTCTAACCATTCCTAGCACCAATA................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
.......TAATACTCACGCGAATCGCTATGCCTTT................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0
....................................................................................................................TAATCGTTAGGTGACGTATCCGA......................... 23 0 1 1.00 1 1 0 0 0 0
..............CACGCGAATCGCTATGCCTTTAAGT............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
........................................................................................................................CGTTAGGTGACGTATCCGAGTTTAAC.................. 26 0 1 1.00 1 0 1 0 0 0
.......................................CGCCCTCTAACCATTCCTAGCACCA.................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
......................................CCGCCCTCTAACCACTCCTAGCACCAAT.................................................................................................. 28 2 1 1.00 1 0 1 0 0 0
....CGGTAATCCTCACGCGAATCGCTATGCCT................................................................................................................................... 29 1 1 1.00 1 0 1 0 0 0
..............................CCTTTAAGTCGCCCCCTAACCATTC............................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
..................................TAAGTCGCCCTCTAACCGTTCCTAGC........................................................................................................ 26 1 1 1.00 1 1 0 0 0 0
......................................................................................................................TTCGTTAGGTGACGTATCCGA......................... 21 1 1 1.00 1 1 0 0 0 0
.....TGTAATACTCACGCGAATCGCTAT....................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0
.......................................................................................ATTCAAGAAATACAAGAGAGC........................................................ 21 1 1 1.00 1 0 1 0 0 0
.........ATACTCACGCGAATCGCTATGCCT................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...........ACTCACGCGAATCGCTATGCCTTTA................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
.................................TTAAGTCGCCCTCTAACCATTCCTAG......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.................................TTAAGTCGCCCTCTAACCGTTCCTAGC........................................................................................................ 27 1 1 1.00 1 1 0 0 0 0
.............................................................................................................................GGTGACGTATCCGAGTTTAACAC................ 23 1 1 1.00 1 1 0 0 0 0
.............................................................................................................................GGTGACGTATCCGAGTTTAACGCAAAT............ 27 0 1 1.00 1 1 0 0 0 0
......................................................................................GATTCAAGAAATACAAGAGAAC........................................................ 22 0 1 1.00 1 0 1 0 0 0
....CGGTAATACTCACGCGATTCGCTATG...................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
........................................................................................................................CGTTAGGTGACGTATCCGA......................... 19 0 1 1.00 1 1 0 0 0 0
..........................................CCTCTAACCATTCCTAGCACCAATAATA.............................................................................................. 28 0 1 1.00 1 1 0 0 0 0
.....................................GTCGCCCTCTAACGATTCCTAG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.....................................GTCGCCCTCTAACCTTTCCTAGC........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0
...........................................................................................................................................GTTTAACGCAAATCGGTATGTCC.. 23 0 1 1.00 1 1 0 0 0 0
.................................................................................................................CCTTAATCGTTAGGTGATGTATCCGA......................... 26 1 1 1.00 1 1 0 0 0 0
......GTAATACTAACGCGAATCGCTACGCCTT.................................................................................................................................. 28 2 1 1.00 1 0 0 1 0 0
.............................................................................................................TTATCCTTAATCGTTAGGTGACGTATC............................ 27 0 1 1.00 1 1 0 0 0 0
.....GGTAATACTCACGCGAATCGCTATGCCTT.................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0
..................................CAAGTCGCCCTCTAACCATTCCTAGC........................................................................................................ 26 1 1 1.00 1 0 1 0 0 0
...................................AGGTCGCCCTCTAACCATTCCTAGC........................................................................................................ 25 1 1 1.00 1 1 0 0 0 0
................................................................................................................TCCTTAATCGTTAGGTGACGTAT............................. 23 0 1 1.00 1 0 1 0 0 0
.......................................................................................ATTCAAGAAATACAAGAGAAC........................................................ 21 0 1 1.00 1 0 1 0 0 0
...TCGGTAATACTCACGCGAATCGCTATGCC.................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
....................................AGTCGCCCTCTAACCATTCCTATC........................................................................................................ 24 1 1 1.00 1 0 1 0 0 0
........AATACTCACGCGAATCGCTATGCCTT.................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0
...................................................................................TCTGATTCAAGAAATACAAGAGAGC........................................................ 25 1 1 1.00 1 0 1 0 0 0
..................................TAAGTCGCCCTCTAACCATTCCTAG......................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
......................................TCGCCCTCTAACCATTCCTAGCACCAA................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
......................................................................................................................ATCGTTAGGTGACGTATCCG.......................... 20 0 1 1.00 1 1 0 0 0 0
.................................TTAAGTCGCCCTCTAACCAT............................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.......................CGCTATGCCTTTAAGTCGCCCTCTAAC.................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
.......................................CGCCCTCTAACCATTCCTAGCA....................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................AATCGTTAGGTGACGTATCCGAGTT...................... 25 0 1 1.00 1 0 0 0 0 1
...........................................................................................................................TAGGTGACGTATCCGAGTTTAACGCAAAT............ 29 0 1 1.00 1 1 0 0 0 0
............................................TCTAACCATTCCTAGCACCAATAATA.............................................................................................. 26 0 1 1.00 1 1 0 0 0 0
.................................ATAAGTCGCCCTCTAACCATTCCTAGC........................................................................................................ 27 1 1 1.00 1 1 0 0 0 0
........................................................................................................................CGTTAGGTGACGTATCCGAGTTTAA................... 25 0 1 1.00 1 0 0 1 0 0
...........................................................................................AAAAAATACAAGAGAACT....................................................... 18 1 5 0.20 1 0 1 0 0 0
.............................................................................TCAGTGTCTTATTCAAGAAC................................................................... 20 3 8 0.13 1 0 1 0 0 0
.............................................................CCAAAAATTTATTAAAACAGTGT................................................................................ 23 3 11 0.09 1 0 1 0 0 0
...........................................................................................AAGAAAGAAAAGAGAACT....................................................... 18 2 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12916:4866-5029 - dan_461 AGGAGCCATTATGAGTGCGCTTAGCGATACGGAAATTCAGCGGGAGATTGGTAAGG----------------AT----------CGTG----GTT----------------AT-TATATTATTTTGTCACAGACTAAGTTCTTTAT-------------------------GT-TC--T---CTTGAAATAGGAATTAGCAATCCACTGCATAGGCTCAAATTGCGTTTAGCCATACAGGAG
droBip1 scf7180000392937:57476-57639 - GGGTGCCATCATGAGTGCGCTAAGCGATACGGAAATTCAGCGGGAGATTGGTAAGA----------------AT----------CGTA----GTT----------------AT-GTTATAAAGATGTTGCAGACTAAGTTGTGTAT-------------------------CT-TC--T---CCACCAACAGGAATTAGCAATCCCCTGCATAGGCTCAAATTGCGATTAGCCATTCAGGAG
droKik1 scf7180000302468:434129-434298 - GGGGGCCATTATGAGTGCACTTAGCGATACGGAAATACAGCGGGAGATAGGTGAGTGCCACTATTCCCTCCTTT-----------CCA----AGT----------------TCGCTGAGC--A----------------------TTCTCTC---------TAAC--CACTCT-CT--C---CGTTCAATAGGCATTAGCAATCCCCTGCACAGGCTCAAGCTGCGTCTGGCCATTCAGGAA
droFic1 scf7180000453815:55155-55309 + CGGTGCCATTATGAGCGCGCTAAGCGACACGGAAATTCAGCGGGAGATTGGTGAGC----------------AT----------CCTT----GGT----------------TTCTATGCT--GCTATCCC-------------------------------TGAC--TAACTT-TC--T---TCTTTGACAGGCATCAGCAATCCCCTGCACAGGCTCAAGCTTCGCCTGGCCATTCAGGAA
droEle1 scf7180000490640:402018-402181 + CGGGGCCATCATGAGTGCGCTAAGCGACACGGAAATTCAGCGGGAGATCGGTGAGG----------------ATGA------T-CCTGTGTGTT-----------------GCTCTCGTT--GCTCTCGG-------------------------------CGTC--TAACCT-TC--TTTACCTTCTACAGGCATCAGCAATCCCCTGCACAGGCTCAAGCTCCGCCTGGCCATTCAGGAA
droBia1 scf7180000302422:2488721-2488875 + CGGGGCCATTATGAGTGCGTTGAGCGACACTGAAATTCAGCGGGAGATCGGTACGT----------------GT----------GCTG----GGT----------------GTACTCATT--TCTTTTGC-------------------------------TAGC--TAACTC-TT--T---CCCTCTACAGGCATCAGCAATCCTCTGCACAGGCTCAAGCTTCGCCTGGCCATTCAGGAA
droTak1 scf7180000415399:1449930-1450085 + CGGGGCCATTATGAGTGCGTTGAGCGACACGGAAATTCAGCGGGAGATTGGTACGC----------------AA----------CCTG----GTT----------------GTCTTTATC--GTTTTCGC-------------------------------TGGC--TAACTTTTC--C---TTCCCTACAGGCATCAGCAATCCTCTGCACCGGTTGAAGCTTCGCCTGGCCATTCAGGAA
droEug1 scf7180000409463:45126-45280 - CGGGGCCATTATGAGTGCGCTAAGCGACACTGAAATTCAGCGGGAGATTGGTAAGA----------------AT----------CTTG----GGT----------------ATCCTCATT--GCATTCCC-------------------------------TGGT--TAACTT-TT--T---TCGTCGACAGGCATTAGCAATCCCCTACACAGGCTCAAGCTTCGTCTTGCTATTCAGGAA
dm3 chr2L:6729723-6729876 + CGGGGCCATCATGAGTGCGTTAAGCGATACGGAAATTCAGCGGGAAATTGGTATGA----------------GT----------CTG-----ATT----------------CTTTCTATT--GCTTTTGC-------------------------------TTGC--TAACTT-TT--T---TGTTCGACAGGCATCAGTAATCCCTTGCACAGGCTCAAACTTCGGCTGGCCATTCAGGAA
droSim2 2l:6503189-6503342 + dsi_5891 CGGGGCCATCATGAGCGCGTTGAGCGATACGGAAATTCAGCGGGAGATTGGTATGA----------------GT----------CTG-----ATG----------------CTTTCTTTC--GCTTTCCC-------------------------------TGGC--TAACTT-TT--T---TGTTCGACAGGCATCAGCAATCCCTTGCACAGGCTCAAACTTCGGCTGGCCATTCAGGAA
droSec2 scaffold_3:2268414-2268567 + CGGGGCCATCATGAGCGCGTTGAGCGATACGGAAATTCAGCGGGAGATTGGTATGA----------------GT----------GTG-----ATG----------------CTTTCTTTC--GCTTTCCC-------------------------------TGGC--TAACTT-TT--C---TGTTCGACAGGCATCAGCAATCCCTTGCACAGGCTCAAACTTCGGCTGGCCATTCAGGAA
droYak3 2L:6182059-6182215 - CGGGGCCATCATGAGTGCGTTGAGCGACACGGAAATTCAGCGGGAGATTGGTGAGA----------------GT----------ATG-----GTT----------------CTTTCTATT--GCTTTTAC-------------------------------TGGC--TAATTT-GGATT--TCGTTCGACAGGCATCAGCAATCCCTTGCACAGGCTCAAGCTTCGGCTGGCCATTCAGGAA
droEre2 scaffold_4929:15646184-15646338 + CGGGGCCATCATGAGTGCGCTGAGCGACACAGAAATTCAGCGGGAGATTGGTAAGC----------------GT----------CTGG----TGT----------------TTTTTTATT--GCTTTCCC-------------------------------TGGC--TAACTT-TT--T---TGTTCGACAGGCATCAGCAATCCCTTGCACAGGCTCAAGCTTCGCCTGGCCATTCAGGAA
dp5 4_group1:3828978-3829141 + GGGTGCCATTATGAGTGCCCTTAGCGATACGGAAATACAGCGGGAGATTGGTAAGA----------------CA----------CTAG----CCTCAAACCTCCCACCAAT---------------------------------CAT---------TGCTTTAATTGTTGTGT-CT--C---TCGCGTTTAGGCATTAGCAATCCTCTGCACAGGCTCAAATTGCGTTTGGCCATACAGGAA
droPer2 scaffold_5:1441063-1441226 - GGGTGCCATTATGAGTGCCCTCAGCGATACGGAAATACAGCGGGAGATTGGTAAGG----------------CA----------CTAG----CCTCCATCCTCCCACCAAT---------------------------------CAT---------TGCTTTAATTGTTGTGT-CT--C---TTGCGTTTAGGCATTAGCAATCCTCTGCACAGGCTCAAATTGCGTTTGGCCATACAGGAA
droWil2 scf2_1100000004585:7339735-7339892 + CGGGGCCATTATGAGTGCATTAAGCGATACTGAAATCCAGAGAGAAATAGGTAAAT----------------CT----------CTGA----ATT----------------TTGACAAGT--A----------------------AT-A-------TTTATTAATAAAAACAA-AT--T---TTGTTTCCAGGCATTAGTAATCCTTTACATAGGCTCAAATTGCGCCTAGCCATACAAGAA
droVir3 scaffold_12963:3351285-3351448 - dvi_10322 CGGCGCTATTATGAGCGCACTAAGCGACACGGAAATACAGCGGGAGATAGGTAACA----------------TG----------CA-A----AGT----------------GTGTAGAGT--G----------------------TATATTCGATCTATGCTAAA--CAGCCTGTT--C---TCCTCGATAGGCATAAGTAATCCGCTGCACAGGCTCAAACTACGTTTGGCCATACAGGAA
droMoj3 scaffold_6500:13723510-13723681 - GGGTGCTATTATGAGCGCACTTAGCGACACGGAGATACAGCGGGAAATAGGTGAGG----------------GC----------ATTA----AAT----------------AT-GAAGTTAATTCACCTAAAACTAAATTAAAT-----------CA----AATC--CAAATC-TT--T---CACTTTGTAGGTATTAGTAATCCCTTACACAGGCTCAAACTACGTTTGGCCATACAGGAA
droGri2 scaffold_15252:2923054-2923215 - TGGCGCAATTATGAGTGCGTTAAGCGATACGGAAATACAGCGGGAAATAGGTAAAT----------------GC-ACAGTGCGCATCA----AAT----------------AT------------GACA-------------------------CCTGTACTAAATGCAACTA-AT--T---TCTTTGGCAGGCATTAGTAATCCCTTACATAGGCTTAAACTTCGGTTGGCTATACAGGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AGGAGCCATTATGAGTGCGCTTAGCGATACGGAAATTCAGCGGGAGATTGGTAAGG----------------AT----------CGTG----GTT----------------AT-TATATTATTTTGTCACAGACTAAGTTCTTTAT-------------------------GT-TC--T---CTTGAAATAGGAATTAGCAATCCACTGCATAGGCTCAAATTGCGTTTAGCCATACAGGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................TAGCGATACGGAAATTCAGCGGGAGA...................................................................................................................................................................................................261104.0010460385001
.....................TAGCGATACGGAAATTCAGCGGGAGAT..................................................................................................................................................................................................27166.006647161020
...............................................................................................................................................................................................................TGCATAGGCTCAAATTGCGTTTAGC..........25150.0050211117100
.....................TAGCGATACGGAAATTCAGCGGGAG....................................................................................................................................................................................................25135.003517144000
............................................................................................................................................................................................................CACTGCATAGGCTCAAATTGCGTTTAGC..........28132.00322273000
.....................TAGCGATACGGAAATTCAGCGGGA.....................................................................................................................................................................................................24125.00259151000
.............................................................................................................................................................................................................ACTGCATAGGCTCAAATTGCGTTTAGC..........27116.0016952000
...............................................................................................................................................................................................................TGCATAGGCTCAAATTGCGTTTAGCC.........26115.00152130000
...........................TACGGAAATTCAGCGGGAGATTGG...............................................................................................................................................................................................24115.0015951000
..........................................................................................................................................................................................................TCCACTGCATAGGCTCAAATTGCGTT..............26114.00141310000
.....................TAGCGATACGGAAATTCAGCGGGAGATT.................................................................................................................................................................................................28113.00131200010
.....................TAGCGATACGGAAATTCAGCGGG......................................................................................................................................................................................................23111.0011632000
......................AGCGATACGGAAATTCAGCGGGAGAT..................................................................................................................................................................................................2617.007601000
...........................................................................................................................................................................................................CCACTGCATAGGCTCAAATTGCGTT..............2516.006420000
............................................................................................................................................................................................................CACTGCATAGGCTCAAATTGCGTT..............2416.006501000
...........................TACGGAAATTCAGCGGGAGATTG................................................................................................................................................................................................2316.006600000
...........................TACGGAAATTCAGCGGGAGATT.................................................................................................................................................................................................2216.006330000
.........................GATACGGAAATTCAGCGGGAGATTG................................................................................................................................................................................................2516.006420000
....................................................................................................................................................................................................TAGCAATCCACTGCATAGGCTCAAAT....................2616.006501000
.........................GATACGGAAATTCAGCGGGAGA...................................................................................................................................................................................................2215.005500000
..................................................GTAAGG----------------AT----------CGTG----GTT----------------AT-TATATTATT.......................................................................................................................2615.005320000
........................CGATACGGAAATTCAGCGGGAGATT.................................................................................................................................................................................................2515.005120002
...............................................................................................................................................................................................................TGCATAGGCTCAAATTGCGTTTAGCCA........2715.005500000
.................................................................................................................................................T-------------------------GT-TC--T---CTTGAAATAGGAATTAGCAATC......................................2815.005320000
......................AGCGATACGGAAATTCAGCGGGAG....................................................................................................................................................................................................2414.004130000
..................................................GTAAGG----------------AT----------CGTG----GTT----------------AT-TATATTAT........................................................................................................................2514.004220000
........................CGATACGGAAATTCAGCGGGAGA...................................................................................................................................................................................................2314.004310000
.........................GATACGGAAATTCAGCGGGAGATTGG...............................................................................................................................................................................................2614.004310000
..........................................................................................................................................................................................................TCCACTGCATAGGCTCAAATTGCGTTTA............2814.004300010
......................AGCGATACGGAAATTCAGCGGGAGA...................................................................................................................................................................................................2514.004220000
...............................................................................................................................................................................................................TGCATAGGCTCAAATTGCGTTTAGCCAT.......2813.003210000
..........................................................................................................................................................................................................TCCACTGCATAGGCTCAAATTGCGTC..............2613.003030000
.................................................................................................................................................T-------------------------GT-TC--T---CTTGAAATAGGAATTAGC..........................................2413.003210000
.....................TAGCGATACGGAAATTCAGCGGGAGAC..................................................................................................................................................................................................2713.003030000
............................................................................................................................................................................................................CACTGCATAGGCTCAAATTGCGTTTAG...........2713.003300000
..................................................GTAAGG----------------AT----------CGTG----GTT----------------AT-TATATTATTT......................................................................................................................2713.003120000
..............................................................................................................................................................................................................CTGCATAGGCTCAAATTGCGTTTAGC..........2612.002200000
......................AGCGATACGGAAATTCAGCGGGA.....................................................................................................................................................................................................2312.002110000
....................TTAGCGATACGGAAATTCAGC.........................................................................................................................................................................................................2112.002020000
............................................................................................................................................................................................................CACTGCATAGGCTCAAATTGCGTTT.............2512.002200000
..........................................................................................................................................................................................................TCCACTGCATAGGCTCAAATTGCGTTT.............2712.002110000
...............TGCGCTTAGCGATACGGAAATTCAGC.........................................................................................................................................................................................................2612.002020000
............................................................................................................................TGTCACAGACTAAGTTCTTTAT-------------------------GT-TC--T---CT..........................................................2912.002110000
.......................GCGATACGGAAATTCAGCGGGAGATT.................................................................................................................................................................................................2612.002101000
...........................TACGGAAATTCAGCGGGAGAT..................................................................................................................................................................................................2112.002101000
............................................................................................................................................................................................................CACTGCATAGGCTCAAATTGCGTTTA............2612.002110000
...............................................................................................................................................................................................................TGCATAGGCTCAAATTGCGTTTAG...........2412.002101000
............................................................................................................................................................................................................CACTGCATAGGCTCAAATTGCGT...............2312.002200000
.......................GCGATACGGAAATTCAGCGGGAGATTG................................................................................................................................................................................................2712.002200000
.................................................................................................................................................T-------------------------GT-TC--T---CTTGAAATAGGAATTAGCA.........................................2512.002110000
....................................................................................................................................................................................................TAGCAATCCACTGCATAGGCTCAAA.....................2512.002200000
............................................................................................................................................................................................................CACTGCATAGGCTCAAATTGCGTTTAGCC.........2912.002110000
...................................................................................................................................................................................................................TAGGCTCAAATTGCGTTTAGCCATAC.....2612.002110000
.............................................................................................................................................................................................................ACTGCATAGGCTCAAATTGCGTTTAGCC.........2812.002020000
........................CGATACGGAAATTCAGCGGGAGATTG................................................................................................................................................................................................2612.002200000
.........................GATACGGAAATTCAGCGGGAGATT.................................................................................................................................................................................................2412.002100010
...................................TTCAGCGGGAGATTGGTAAGG----------------AT----------C.............................................................................................................................................................2411.001100000
............................................................................................................................TGTCACAGACTAAGTTCTTTAT-------------------------GT-TC--T---............................................................2711.001010000
.......................................................................................................................................................................................TTGAAATAGGAATTAGCAATC......................................2111.001010000
................................AAATTCAGCGGGAGATTGGTAAGG----------------..........................................................................................................................................................................2411.001001000
...................................TTCAGCGGGAGATTGGTAAGG----------------AT----------CG............................................................................................................................................................2511.001100000
...................................TTCAGCGGGAGATTGGTAAGG----------------AT----------..............................................................................................................................................................2311.001100000
....................TTAGCGATACGGAAATTCAGCGGGAGATT.................................................................................................................................................................................................2911.001100000
..........................................................................................................................................................................................................TCCACTGCATAGGCTCAAATTG..................2211.001001000
................GCGCTTAGCGATACGGAAATTCAGCG........................................................................................................................................................................................................2611.001000010
.........................GATACGGAAATTCAGCGGGAGAT..................................................................................................................................................................................................2311.001010000
.......................GCGATACGGAAATTCAGCGGGA.....................................................................................................................................................................................................2211.001100000
...........................................................................................................................TTGTCACAGACTAAGTTCTTTAT-------------------------GT-TC--................................................................2711.001001000
.............................................................................................................................................................................................TAGGAATTAGCAATCCACTGCATAGGCTC........................2911.001100000
...........................................................................................................................TTGTCACAGACTAAGTTCTTTA.................................................................................................2211.001100000
.............................................................................................................................GTCACAGACTAAGTTCTTTAT-------------------------GT-TC--T---CT..........................................................2811.001100000
............................ACGGAAATTCAGCGGGAGA...................................................................................................................................................................................................1911.001010000
..................................................GTAAGG----------------AT----------CGTG----GTT----------------AT-TATATTA.........................................................................................................................2411.001000010
........................................................................................................................................................................................................................TCAAATTGCGTTTAGCCATACAGGAG2611.001010000
..................................ATTCAGCGGGAGATTGGTAAGG----------------AT----------CG............................................................................................................................................................2611.001100000
..............................................................................................................................................................................................AGGAATTAGCAATCCACTGCATAGGCTC........................2811.001010000
...................CTTAGCGATACGGAAATTCAGCGGG......................................................................................................................................................................................................2511.001001000
.................................................................................................................................................T-------------------------GT-TC--T---CTTGAAATAGGAATTAGCAA........................................2611.001010000
...........................TACGGAAATTCAGCGGGAGATTGGTA.............................................................................................................................................................................................2611.001100000
..................................................GTAAGG----------------AT----------CGTG----GTT----------------AT-TATATT..........................................................................................................................2311.001100000
.................................AATTCAGCGGGAGATTGGTAAGG----------------AT----------C.............................................................................................................................................................2611.001010000
....................TTAGCGATACGGAAATTCAGCGGGAGAT..................................................................................................................................................................................................2811.001010000
..................................................................................................................................................................................................................ATAGGCTCAAATTGCGTTTAGC..........2211.001010000
.................................AATTCAGCGGGAGATTGGTAAGG----------------..........................................................................................................................................................................2311.001001000
..................................ATTCAGCGGGAGATTGGTAAGG----------------AT----------..............................................................................................................................................................2411.001100000
...............................................................................................................................CACAGACTAAGTTCTTTAT-------------------------GT-TC--T---............................................................2411.001100000
.........................................................................................................................TTTTGTCACAGACTAAGTTCTTTAT-------------------------G......................................................................2611.001100000
...............TGCGCTTAGCGATACGGAAATTCAGCG........................................................................................................................................................................................................2711.001000010
...................................................TAAGG----------------AT----------CGTG----GTT----------------AT-TATATTATTT......................................................................................................................2611.001010000
...........................TACGGAAATTCAGCGGGAGATTGGA..............................................................................................................................................................................................2511.001100000
.....................TAGCGATACGGAAATTCAGCGGGAGT...................................................................................................................................................................................................2611.001010000
........................................................................................................................................................................................TGAAATAGGAATTAGCAATCCACTGCA...............................2711.001100000
...................................TTCAGCGGGAGATTGGTAAGG----------------..........................................................................................................................................................................2111.001100000
................................................................................................................................................................................................GAATTAGCAATCCACTGCATAGGCTCA.......................2711.001100000
.....................TAGCGATACGGAAATTCAGCGGT......................................................................................................................................................................................................2311.001001000
...................................................................................................................................................................................................................TAGGCTCAAATTGCGTTTAGC..........2111.001010000
....................................................................................................................................................................................................TAGCAATCCACTGCATAGGC..........................2011.001010000
...............................GAAATTCAGCGGGAGATTGGTAAGG----------------..........................................................................................................................................................................2511.001001000
........................CGATACGGAAATTCAGCGGGA.....................................................................................................................................................................................................2111.001010000
...........................TACGGAAATTCAGCGGGAGATTGGTAAG...........................................................................................................................................................................................2811.001100000
.................................................................................................................................................T-------------------------GT-TC--T---CTTGAAATAGGAATTAGCAATCC.....................................2911.001100000
.............................................................................................................................................................................................TAGGAATTAGCAATCCACTGCATAGGCT.........................2811.001010000
..........................................................................................................................................................................................................TCCACTGCATAGGCTCAAATTGCGT...............2511.001100000
.....................................................................................................................................................................................................AGCAATCCACTGCATAGGCTCAAA.....................2411.001100000
...............TGCGCTTAGCGATACGGAAATTCAG..........................................................................................................................................................................................................2511.001100000
...................................TTCAGCGGGAGATTGGTAAGG----------------AT----------CGC...........................................................................................................................................................2611.001010000
...........................................................................................................................................................................................................CCACTGCATAGGCTCAAATTGCGTTT.............2611.001100000
................GCGCTTAGCGATACGGAAATTCAGC.........................................................................................................................................................................................................2511.001001000
..........................ATACGGAAATTCAGCGGGAGATT.................................................................................................................................................................................................2311.001001000
.......................GCGATACGGAAATTCAGCGGGAGA...................................................................................................................................................................................................2411.001100000
.......................GCGATACGGAAATTCAGCGGGAGATC.................................................................................................................................................................................................2611.001010000
.........................GATACGGAAATTCAGCGGGAGATTGGT..............................................................................................................................................................................................2711.001000010
.........................GATACGGAAATTCAGCGGGAG....................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................CAAATTGCGTTTAGCCATACAGGAG2511.001100000
............................................................................................................................TGTCACAGACTAAGTTCTTTAT-------------------------GT-TC--................................................................2611.001100000
................................................................................................................................ACAGACTAAGTTCTTTAT-------------------------GT-TC--T---CT..........................................................2511.001100000
.............................................................................................................................................................................................TAGGAATTAGCAATCCACTGCATAGGC..........................2711.001010000
.....................TAGCGATACGGAAATTCAGCGG.......................................................................................................................................................................................................2211.001000010
...............................................................................................................................................................................................................TGCATAGGCTCAAATTGCGTTTAGCCATA......2911.001100000
..........................................................................................................................TTTGTCACAGACTAAGTTCTTTAT-------------------------GT-....................................................................2611.001100000
...........................TACGGAAATTCAGCGGGAG....................................................................................................................................................................................................1911.001010000
.....................TAGCGATACGGAAATTCAGCGGGAA....................................................................................................................................................................................................2511.001100000
...............................................................................................................................CACAGACTAAGTTCTTTAT-------------------------GT-TC--T---CT..........................................................2611.001100000
......CATTATGAGTGCGCTTAGCGATACGGA.................................................................................................................................................................................................................2711.001100000
...........................................................................................................................................................................................................CCACTGCATAGGCTCAAATTGCGTTTAGC..........2911.001100000
.....................TAGCGATACGGAAATTCAGCGGGAC....................................................................................................................................................................................................2511.001010000
.............................CGGAAATTCAGCGGGAGATTGGCG.............................................................................................................................................................................................2411.001100000
...........................TACGGAAATTCAGCGGGAGA...................................................................................................................................................................................................2011.001100000
.............................CGGAAATTCAGCGGGAGATTGGTAAG...........................................................................................................................................................................................2611.001100000
..................................................................................................................................................................................................ATTAGCAATCCACTGCATAGGCTC........................2411.001010000
...............................................................................................................................................................................................................TGCATAGGCTCAAATTGCGTTT.............2211.001100000
..GAGCCATTATGAGTGCGCT.............................................................................................................................................................................................................................1911.001000001
..............................................................................................................................................................................................................CTGCATAGGCTCAAATTGCGTTTAGCCA........2811.001100000
.......................GCGATACGGAAATTCAGCGGGAGAT..................................................................................................................................................................................................2511.001100000
...............................................................................................................................CACAGACTAAGTTCTTTAT-------------------------GT-TC--T---CTT.........................................................2711.001100000
.......ATTATGAGTGCGCTTAGCGATACGGAA................................................................................................................................................................................................................2711.001100000
...................CTTAGCGATACGGAAATTCAGCGGGA.....................................................................................................................................................................................................2611.001100000
..............................................................................................................................TCACAGACTAAGTTCTTTAT-------------------------GT-TC--T---CT..........................................................2711.001100000
.....................................................................................................................................................................................................AGCAATCCACTGCATAGGCTCAAAT....................2511.001100000
...................................................................................................................................................................................................TTAGCAATCCACTGCATAGGCTCAAAT....................2711.001100000
................................................................................................................................................................................................GAATTAGCAATCCACTGCATAGGCTC........................2611.001100000
droBip1
GGGTGCCATCATGAGTGCGCTAAGCGATACGGAAATTCAGCGGGAGATTGGTAAGA----------------AT----------CGTA----GTT----------------AT-GTTATAAAGATGTTGCAGACTAAGTTGTGTAT-------------------------CT-TC--T---CCACCAACAGGAATTAGCAATCCCCTGCATAGGCTCAAATTGCGATTAGCCATTCAGGAGSizeHit CountTotal NormTotal
No Reads
droKik1
GGGGGCCATTATGAGTGCACTTAGCGATACGGAAATACAGCGGGAGATAGGTGAGTGCCACTATTCCCTCCTTT-----------CCA----AGT----------------TCGCTGAGC--A----------------------TTCTCTC---------TAAC--CACTCT-CT--C---CGTTCAATAGGCATTAGCAATCCCCTGCACAGGCTCAAGCTGCGTCTGGCCATTCAGGAASizeHit CountTotal NormTotal
No Reads
droFic1
CGGTGCCATTATGAGCGCGCTAAGCGACACGGAAATTCAGCGGGAGATTGGTGAGC----------------AT----------CCTT----GGT----------------TTCTATGCT--GCTATCCC-------------------------------TGAC--TAACTT-TC--T---TCTTTGACAGGCATCAGCAATCCCCTGCACAGGCTCAAGCTTCGCCTGGCCATTCAGGAASizeHit CountTotal NormTotal
No Reads
droEle1
CGGGGCCATCATGAGTGCGCTAAGCGACACGGAAATTCAGCGGGAGATCGGTGAGG----------------ATGA------T-CCTGTGTGTT-----------------GCTCTCGTT--GCTCTCGG-------------------------------CGTC--TAACCT-TC--TTTACCTTCTACAGGCATCAGCAATCCCCTGCACAGGCTCAAGCTCCGCCTGGCCATTCAGGAASizeHit CountTotal NormTotal
No Reads
droBia1
CGGGGCCATTATGAGTGCGTTGAGCGACACTGAAATTCAGCGGGAGATCGGTACGT----------------GT----------GCTG----GGT----------------GTACTCATT--TCTTTTGC-------------------------------TAGC--TAACTC-TT--T---CCCTCTACAGGCATCAGCAATCCTCTGCACAGGCTCAAGCTTCGCCTGGCCATTCAGGAASizeHit CountTotal NormTotal
No Reads
droTak1
CGGGGCCATTATGAGTGCGTTGAGCGACACGGAAATTCAGCGGGAGATTGGTACGC----------------AA----------CCTG----GTT----------------GTCTTTATC--GTTTTCGC-------------------------------TGGC--TAACTTTTC--C---TTCCCTACAGGCATCAGCAATCCTCTGCACCGGTTGAAGCTTCGCCTGGCCATTCAGGAASizeHit CountTotal NormTotal
No Reads
droEug1
CGGGGCCATTATGAGTGCGCTAAGCGACACTGAAATTCAGCGGGAGATTGGTAAGA----------------AT----------CTTG----GGT----------------ATCCTCATT--GCATTCCC-------------------------------TGGT--TAACTT-TT--T---TCGTCGACAGGCATTAGCAATCCCCTACACAGGCTCAAGCTTCGTCTTGCTATTCAGGAASizeHit CountTotal NormTotal
No Reads
dm3
CGGGGCCATCATGAGTGCGTTAAGCGATACGGAAATTCAGCGGGAAATTGGTATGA----------------GT----------CTG-----ATT----------------CTTTCTATT--GCTTTTGC-------------------------------TTGC--TAACTT-TT--T---TGTTCGACAGGCATCAGTAATCCCTTGCACAGGCTCAAACTTCGGCTGGCCATTCAGGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................CAGGCTCAAACTTCGGCTGGCCA........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGGGGCCATCATGAGTGCGTTA............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CATGAGTGCGTTAAGCGATACGGAA................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................CTCAAACTTCGGCTGGCC.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ACAGGCTCAAACTTCGGCTG............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ACGGAAATTCAGCGGGAAAT..................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GGAAATTCAGCGGGAAATTGGC..............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CCATCATGAGTGCGTTAAGCGATACGG..................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GGGGCCATCATGAGTGCGTTA............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............GTGCGTTAAGCGATACGGAAATTCAG..........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................CAAACTTCGGCTGGCCATT......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................ACGGAAATTCAGCGGGAA....................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................GGCTCAAACTTCGGCTGGCCAA.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ACAGGCTCAAACTTCGGCTGGCCATT......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TACGGAAATTCAGCGGGAAA...................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................GTTAAGCGATACGGAAATTCAGCGGG......................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................T----------CTG-----ATT----------------CTTTCTATT--GCTTA...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AAATTCAGCGGGAAATTGGC..............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCGATACGGAAATTCAGCG........................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......CATCATGAGTGCGTTAAGCGATACGG..................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................AAATTCAGCGGGAAATTG................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ATGAGTGCGTTAAGCGATACGGAAATT.............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........TGAGTGCGTTAAGCGATACGG..................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATACGGAAATTCAGCGGG......................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................T--GCTTTTGC-------------------------------TTGC--TAACTT-TT--................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATACGGAAATTCAGCGGG......................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TGC--TAACTT-TT--T---TGT.........................................................1530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
droSim2
CGGGGCCATCATGAGCGCGTTGAGCGATACGGAAATTCAGCGGGAGATTGGTATGA----------------GT----------CTG-----ATG----------------CTTTCTTTC--GCTTTCCC-------------------------------TGGC--TAACTT-TT--T---TGTTCGACAGGCATCAGCAATCCCTTGCACAGGCTCAAACTTCGGCTGGCCATTCAGGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................GCTCAAACTTCGGCTGGC..........1811.00100000000000100000
.....................................................................................................................................................................................................................GGCTCAAACTTCGGCTGGCCA........2111.00100000000001000000
................................AAATTCAGCGGGAGATT.................................................................................................................................................................................................1711.00100000000001000000
droSec2
CGGGGCCATCATGAGCGCGTTGAGCGATACGGAAATTCAGCGGGAGATTGGTATGA----------------GT----------GTG-----ATG----------------CTTTCTTTC--GCTTTCCC-------------------------------TGGC--TAACTT-TT--C---TGTTCGACAGGCATCAGCAATCCCTTGCACAGGCTCAAACTTCGGCTGGCCATTCAGGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......ATCATGAGCGCGTTGAGC.........................................................................................................................................................................................................................1811.0010010
........................CGATACGGAAATTCAGCGGGAG....................................................................................................................................................................................................2211.0010100
......................AGCGATACGGAAATTCAGCGGGAGAT..................................................................................................................................................................................................2611.0010100
..........................ATACGGAAATTCAGCGGG......................................................................................................................................................................................................1811.0010010
droYak3
CGGGGCCATCATGAGTGCGTTGAGCGACACGGAAATTCAGCGGGAGATTGGTGAGA----------------GT----------ATG-----GTT----------------CTTTCTATT--GCTTTTAC-------------------------------TGGC--TAATTT-GGATT--TCGTTCGACAGGCATCAGCAATCCCTTGCACAGGCTCAAGCTTCGGCTGGCCATTCAGGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................CGACACGGAAATTCAGCGGGAG....................................................................................................................................................................................................2212.00200200000000
.......................GCGACACGGAAATTCAGCG........................................................................................................................................................................................................1911.00101000000000
.................................................................................................................................................................................................................CACAGGCTCAAGCTTCGGCTGGC..........2311.00101000000000
.........................GACACGGAAATTCAGCGGGAG....................................................................................................................................................................................................2111.00100010000000
.GGGGCCATCATGAGTGCGTTGAG..........................................................................................................................................................................................................................2311.00101000000000
.......ATCATGAGTGCGTTGAGC.........................................................................................................................................................................................................................1811.00100100000000
droEre2
CGGGGCCATCATGAGTGCGCTGAGCGACACAGAAATTCAGCGGGAGATTGGTAAGC----------------GT----------CTGG----TGT----------------TTTTTTATT--GCTTTCCC-------------------------------TGGC--TAACTT-TT--T---TGTTCGACAGGCATCAGCAATCCCTTGCACAGGCTCAAGCTTCGCCTGGCCATTCAGGAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................GACACAGAAATTCAGCGGGAGATT.................................................................................................................................................................................................2413.0030100200
.......................GCGACACAGAAATTCAGCGGG......................................................................................................................................................................................................2111.0010000010
......CATCATGAGTGCGCTGAGC.........................................................................................................................................................................................................................1911.0010100000
.........CATGAGTGCGCTGAGCGACACA...................................................................................................................................................................................................................2211.0011000000
...GGCCATCATGAGTGCGCTGAGC.........................................................................................................................................................................................................................2211.0011000000
dp5
GGGTGCCATTATGAGTGCCCTTAGCGATACGGAAATACAGCGGGAGATTGGTAAGA----------------CA----------CTAG----CCTCAAACCTCCCACCAAT---------------------------------CAT---------TGCTTTAATTGTTGTGT-CT--C---TCGCGTTTAGGCATTAGCAATCCTCTGCACAGGCTCAAATTGCGTTTGGCCATACAGGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................TCTGCACAGGCTCAAATTGCGTTT.............2411.0010100000000
..........................ATACGGAAATACAGCGGGAG....................................................................................................................................................................................................2011.0010000000001
......................AGCGATACGGAAATACAGCGGGAGATT.................................................................................................................................................................................................2711.0010100000000
.............................CGGAAATACAGCGGGAGA...................................................................................................................................................................................................1811.0010100000000
......................AGCGATACGGAAATACAGCGGG......................................................................................................................................................................................................2211.0010100000000
.........................GATACGGAAATACAGCGGGAGATT.................................................................................................................................................................................................2411.0010100000000
.....................................................................................................................................................................................................................GGCTCAAATTGCGTTTGGC..........1911.0010000100000
droPer2
GGGTGCCATTATGAGTGCCCTCAGCGATACGGAAATACAGCGGGAGATTGGTAAGG----------------CA----------CTAG----CCTCCATCCTCCCACCAAT---------------------------------CAT---------TGCTTTAATTGTTGTGT-CT--C---TTGCGTTTAGGCATTAGCAATCCTCTGCACAGGCTCAAATTGCGTTTGGCCATACAGGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................GCCCTCAGCGATACGGAAATAC............................................................................................................................................................................................................2211.001000001
droWil2
CGGGGCCATTATGAGTGCATTAAGCGATACTGAAATCCAGAGAGAAATAGGTAAAT----------------CT----------CTGA----ATT----------------TTGACAAGT--A----------------------AT-A-------TTTATTAATAAAAACAA-AT--T---TTGTTTCCAGGCATTAGTAATCCTTTACATAGGCTCAAATTGCGCCTAGCCATACAAGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........ATGAGTGCATTAAGCGATACT...................................................................................................................................................................................................................2111.00100100
.............................CTGAAATCCAGAGAGAAATAGG...............................................................................................................................................................................................2211.00100010
......CATTATGAGTGCATTAAGCG........................................................................................................................................................................................................................2011.00100010
..................................................................................................................................................................................................ATTAGTAATCCTTTACATAGGCT.........................2311.00101000
......CATTATGAGTGCATTAAGCGAT......................................................................................................................................................................................................................2211.00100010
droVir3
CGGCGCTATTATGAGCGCACTAAGCGACACGGAAATACAGCGGGAGATAGGTAACA----------------TG----------CA-A----AGT----------------GTGTAGAGT--G----------------------TATATTCGATCTATGCTAAA--CAGCCTGTT--C---TCCTCGATAGGCATAAGTAATCCGCTGCACAGGCTCAAACTACGTTTGGCCATACAGGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................ACAGGCTCAAACTACGTTT.............1911.001000000000000000000000100000000000000000000000000000000000000000
..............................GGAAATACAGCGGGAGAT..................................................................................................................................................................................................1811.001000001000000000000000000000000000000000000000000000000000000000
.......ATTATGAGCGCACTAAGCG........................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
.................CACTAAGCGACACGGAAATACAGC.........................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................GACACGGAAATACAGCGGGA.....................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
..........ATGAGCGCACTAAGC.........................................................................................................................................................................................................................1511.001000000000000000000000000000000000000000000000000000000000100000
droMoj3
GGGTGCTATTATGAGCGCACTTAGCGACACGGAGATACAGCGGGAAATAGGTGAGG----------------GC----------ATTA----AAT----------------AT-GAAGTTAATTCACCTAAAACTAAATTAAAT-----------CA----AATC--CAAATC-TT--T---CACTTTGTAGGTATTAGTAATCCCTTACACAGGCTCAAACTACGTTTGGCCATACAGGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGGCGCAATTATGAGTGCGTTAAGCGATACGGAAATACAGCGGGAAATAGGTAAAT----------------GC-ACAGTGCGCATCA----AAT----------------AT------------GACA-------------------------CCTGTACTAAATGCAACTA-AT--T---TCTTTGGCAGGCATTAGTAATCCCTTACATAGGCTTAAACTTCGGTTGGCTATACAGGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:28 PM