ID:

dan_451

 Coordinate:

scaffold_12913:33312-33494 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.6 -21.6 -21.6

Flybase annnotation

exon [dana_GLEANR_3458:1]; CDS [Dana\GF20592-cds]; exon [dana_GLEANR_3458:2]; CDS [Dana\GF20592-cds]; intron [Dana\GF20592-in]

No Repeatable elements found

mature
  1. dan_451  scaffold_12913:33384-33404 -
  2. scaffold_13266:12486841-12486861 -
  3. scaffold_13337:2896901-2896921 +
  4. scaffold_13337:13579696-13579716 +
  5. scaffold_13337:14349044-14349064 -
  6. scaffold_13337:17039479-17039499 +
  7. scaffold_13340:23012813-23012833 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAAGATTTTGGATTTTCGGAAACGATGCAGTTCGTCTTCAATTCCATTGGTAAGTAATTTTTCGACATTCATATATGTATACATTTTAATTTATTTCTTTTATCAACAGATGAAGACTTTTGAAAAAATATTGCCCACGGAGAAGTTACTTCCTTTCGTGTTTTATTTTACCTCTGTAAGTTTAAAGCTGAATTATAATATTCGAAATGCTAATATAATTGATTTCTTCCAGCGCTGAAAACCCGATCCAGCTTTCACATAATCCTGCCCAGCTTCGACATT
**************************************************..((((((((((((.((((......)))).....((((((......(((((.(((....))))))))...))))))..............))))))))))))...((((.((((((.(((((....)))))..))))))))))...........(((((.............)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 V106
head
 V055
head
 M058
embryo
..........................................................................................................................................................................................................................................................AGCTTTCACATAATCCTGCCC............ 21 0 9 0.22 2 2 0 0 0 0
..........................................................................................................................................................................................................................ATTAATTTGTTCCAGCGCTGA............................................ 21 2 7 0.14 1 0 0 0 1 0
............................................................................................................................................GAGAAGTTACTTCCTTTCGTG.......................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0
..........................................................................................................................GAAAAAATATTGCCCACGGAGT........................................................................................................................................... 22 1 7 0.14 1 0 1 0 0 0
.......................................................................................................................................................................................................................................CTCGCTGAAAACCCGATCCAGC.............................. 22 2 7 0.14 1 1 0 0 0 0
..........................................................................................................................................................TTTCGTGTTTTATTTTACCTCT........................................................................................................... 22 0 7 0.14 1 0 1 0 0 0
..........................................................................................................................................................TTTCGTGTTTTATTTTACCTC............................................................................................................ 21 0 7 0.14 1 1 0 0 0 0
................................................................................................................................ATATTGCCCACGGAGAAGTTA...................................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0
...............................................................................................................................AATATTGCCCACGGAGAAGTT....................................................................................................................................... 21 0 7 0.14 1 0 1 0 0 0
..................................................................................................................................ATTGCCCACGGAGAAGTTACT.................................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0
.............................................................................................................................AAAATATTGCCCACGGAGAAG......................................................................................................................................... 21 0 7 0.14 1 0 1 0 0 0
...................................................................................................................................TTGCCCACGGAGAAGTTACTT................................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0
..............................................................................................................................AAATATTGCCCACGGAGAAG......................................................................................................................................... 20 0 7 0.14 1 1 0 0 0 0
...............................................................................................................................................................................................................................................AAACCCGATCCAGCTTTCACA....................... 21 0 7 0.14 1 0 0 1 0 0
.....................................................................................................................................................................................................................ATATAATTGATTTCTTCCAGC................................................. 21 0 7 0.14 1 1 0 0 0 0
..............................................................................................................................................GAAGTTACTTCCTTTCGTGTT........................................................................................................................ 21 0 7 0.14 1 1 0 0 0 0
......................................................................................................................................................................................TTGGAGCTGAATTATAATATT................................................................................ 21 2 7 0.14 1 0 0 1 0 0
................................................................................................................................................................................................................................................................CACATAATCCTGCCCAGCTTC...... 21 0 8 0.13 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................AGCTTTCACATAATCCTGCC............. 20 0 9 0.11 1 1 0 0 0 0
............................................................................................................................................................................................................................................................CTTTCACATAATCCTGCCCA........... 20 0 9 0.11 1 1 0 0 0 0
...................................................................................................TTTATCAAGAGATGATCACT.................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 1
......................................................................................................................................CTTACGGAGAAGTTATTTCC................................................................................................................................. 20 3 17 0.06 1 0 1 0 0 0

Anti-sense strand reads

GGTTCTAAAACCTAAAAGCCTTTGCTACGTCAAGCAGAAGTTAAGGTAACCATTCATTAAAAAGCTGTAAGTATATACATATGTAAAATTAAATAAAGAAAATAGTTGTCTACTTCTGAAAACTTTTTTATAACGGGTGCCTCTTCAATGAAGGAAAGCACAAAATAAAATGGAGACATTCAAATTTCGACTTAATATTATAAGCTTTACGATTATATTAACTAAAGAAGGTCGCGACTTTTGGGCTAGGTCGAAAGTGTATTAGGACGGGTCGAAGCTGTAA
**************************************************..((((((((((((.((((......)))).....((((((......(((((.(((....))))))))...))))))..............))))))))))))...((((.((((((.(((((....)))))..))))))))))...........(((((.............)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 V106
head
 V055
head
 M058
embryo
 V039
embryo
...........................................................................................................................................................................................................................................GACTTTTGGGCTAGGTCGAAA........................... 21 0 7 0.43 3 2 0 1 0 0 0
....................................................................................................................................ACGGGTGCCTCTTCAATGAA................................................................................................................................... 20 0 7 0.29 2 2 0 0 0 0 0
....................................................................................................................................................TGAAGGAAAGCACAAAATAAA.................................................................................................................. 21 0 7 0.29 2 0 2 0 0 0 0
.................................................................................................................................................................................................................................................................TGTATTAGGACGGGTCGAAGC..... 21 0 8 0.25 2 0 0 2 0 0 0
........................................................................................................................................................................................................................................................GGTCGAAAGTGTATTAGGACG.............. 21 0 8 0.25 2 0 2 0 0 0 0
....................................................................................................................................ACGGGTGCCTCTTCAATGAAG.................................................................................................................................. 21 0 7 0.14 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................AGAAGGTCGCGACTTTTGGGC..................................... 21 0 7 0.14 1 0 1 0 0 0 0
.............................................................................................................................................TCTTCAATGAAGGAAAGCACA......................................................................................................................... 21 0 7 0.14 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................GTCGCGACTTTTGGGCTAGGT................................ 21 0 7 0.14 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................................TGGGCTAGGTCGAAAGTGTAT..................... 21 0 7 0.14 1 0 0 1 0 0 0
...................................................................................................................................AACGGGTGCCTCTTCAATGA.................................................................................................................................... 20 0 7 0.14 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GAAGGTCGCGACTTTTGGGC..................................... 20 0 7 0.14 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................................TAGGCTAGGTCGAAAGTGTATT.................... 22 1 7 0.14 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................................TTTTGGGCTAGGTCGAAAGTGTA...................... 23 0 7 0.14 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................................GCTAGGTCGAAAGTGTATT.................... 19 0 7 0.14 1 0 1 0 0 0 0
.......................................................................................................................................GGTGCCTCTTCAATGAAGGAA............................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0 0
....................................................................................................................................................TGAAGGAAAGCACAAAATAA................................................................................................................... 20 0 7 0.14 1 0 1 0 0 0 0
.....................................................................................................................................................GAAGGAAAGCACAAAATAAA.................................................................................................................. 20 0 7 0.14 1 0 1 0 0 0 0
.................................................................................................................................ATAACGGGTGCCTCTTCAATG..................................................................................................................................... 21 0 7 0.14 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................CTAGGTCGGAAGAGTATTAG.................. 20 2 7 0.14 1 0 0 0 0 1 0
..................................................................................................................................................................................................................................................GGGCTAGGTCGAAAGTGTATTAG.................. 23 0 7 0.14 1 0 0 1 0 0 0
..............................................................................................................................................CTTCAATGAAGGAAAGCACAA........................................................................................................................ 21 0 7 0.14 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................TTAGGACGGGTCGAAGCT.... 18 0 8 0.13 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TTAGGACGGGTCGAAGCTGT.. 20 0 8 0.13 1 1 0 0 0 0 0
........................................................................................................................................................................................................................................................TGTCGAAAGTGTATTAGGACG.............. 21 1 8 0.13 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................GTCGAAAGTGTATTAGGACGG............. 21 0 8 0.13 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................TTAGGGCTAGGGCGTAAGTG........................ 20 3 9 0.11 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................CGAAAGTGTATTAGGACGGGT........... 21 0 9 0.11 1 1 0 0 0 0 0
.....................................................................................................................................................................TAAAATGGAGACTTTTTAATT................................................................................................. 21 3 20 0.10 2 0 2 0 0 0 0
.......................GCGACTTCAATCAGAAGTTA................................................................................................................................................................................................................................................ 20 3 14 0.07 1 0 0 0 1 0 0
............................................................................................................................................................................................................................ACTTAAGAGGGTCGCGGCTT........................................... 20 3 14 0.07 1 0 0 0 1 0 0
...........................................................................................................................................................AACCACAAAATAAAATCGA............................................................................................................. 19 2 20 0.05 1 0 0 0 0 1 0
....................................................................................................................................................TGAAGGGAAGCATAAGATAA................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................................AGCTTCAAATTTCGACTT.......................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1
........................CTTCATCAATCAGAAGTTA................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12913:33262-33544 - dan_451 CCAAGATTTTGGATTTTCGGAAACGATGCAGTTCGTCTTCAATTCCATTGGTAAGTAATTTTTCGACATTCATATATGTATACATTTTAATTTATTTCTTTTATCAACAGATGAAGACTTTTGAAAAAATATTGCCCACGGAGAAGTTACTTCCTTTCGTGTTTTATTTTACCTCTGTAAGTTTAAAGCTGAATTATAATATTCGAAATGCTAATATAATTGATTTCTTCCAGCGCTGAAAACCCGATCCAGCTTTCACATAATCCTGCCCAGCTTCGACATT
droWil2 scf2_1100000004768:1285422-1285464 - ------------------------------------------------------------------------TATACATATGCAATTTAGGGAATTTCTTTTCTCAACAGATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:8556713-8556715 - ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
CCAAGATTTTGGATTTTCGGAAACGATGCAGTTCGTCTTCAATTCCATTGGTAAGTAATTTTTCGACATTCATATATGTATACATTTTAATTTATTTCTTTTATCAACAGATGAAGACTTTTGAAAAAATATTGCCCACGGAGAAGTTACTTCCTTTCGTGTTTTATTTTACCTCTGTAAGTTTAAAGCTGAATTATAATATTCGAAATGCTAATATAATTGATTTCTTCCAGCGCTGAAAACCCGATCCAGCTTTCACATAATCCTGCCCAGCTTCGACATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................AGCTTTCACATAATCCTGCCC............2190.222200000
............................................................................................................................................GAGAAGTTACTTCCTTTCGTG..........................................................................................................................2170.141100000
..........................................................................................................................GAAAAAATATTGCCCACGGAGT...........................................................................................................................................2270.141000010
..........................................................................................................................................................TTTCGTGTTTTATTTTACCTCT...........................................................................................................2270.141000010
..........................................................................................................................................................TTTCGTGTTTTATTTTACCTC............................................................................................................2170.141100000
................................................................................................................................ATATTGCCCACGGAGAAGTTA......................................................................................................................................2170.141100000
...............................................................................................................................AATATTGCCCACGGAGAAGTT.......................................................................................................................................2170.141000010
..................................................................................................................................ATTGCCCACGGAGAAGTTACT....................................................................................................................................2170.141100000
.............................................................................................................................AAAATATTGCCCACGGAGAAG.........................................................................................................................................2170.141000010
...................................................................................................................................TTGCCCACGGAGAAGTTACTT...................................................................................................................................2170.141100000
..............................................................................................................................AAATATTGCCCACGGAGAAG.........................................................................................................................................2070.141100000
...............................................................................................................................................................................................................................................AAACCCGATCCAGCTTTCACA.......................2170.141000001
.....................................................................................................................................................................................................................ATATAATTGATTTCTTCCAGC.................................................2170.141100000
..............................................................................................................................................GAAGTTACTTCCTTTCGTGTT........................................................................................................................2170.141100000
................................................................................................................................................................................................................................................................CACATAATCCTGCCCAGCTTC......2180.131100000
..........................................................................................................................................................................................................................................................AGCTTTCACATAATCCTGCC.............2090.111100000
............................................................................................................................................................................................................................................................CTTTCACATAATCCTGCCCA...........2090.111100000
droWil2
------------------------------------------------------------------------TATACATATGCAATTTAGGGAATTTCTTTTCTCAACAGATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/17/2015 at 10:30 PM