ID:

dan_448

 Coordinate:

scaffold_12911:5012979-5013240 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.7 -16.7 -16.3 -15.9

Flybase annnotation

CDS [Dana\GF23346-cds]; exon [dana_GLEANR_7997:4]; exon [dana_GLEANR_7997:3]; CDS [Dana\GF23346-cds]; intron [Dana\GF23346-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. dan_448  scaffold_12911:5013079-5013100 +
  2. scaffold_12943:118161-118182 +
  3. scaffold_12943:4662115-4662136 +
  4. scaffold_13337:16441968-16441989 +
star
  1. dan_448  scaffold_12911:5013029-5013051 +
  2. scaffold_12943:4662054-4662076 +
  3. scaffold_13337:16441918-16441940 +

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################--
TAACTTTTCAGTTGCTCAGCTTGGAATCCTTTGTGAGGAACGTGTTCCAGGTATATCCAGATAGGAGCACGATTTTAAAATGGTTGAATTCGAACCATTTCGAAAGAGTGGGCGCTTTGCTAGTTAGCAAAACCCATGTCAGAGTGGAAGAAGGATTCCAGCAAAACCCTTGTTAACCCACAAAAGGCCATTCAATTCGTGGCGATATTGGCCACTATCATTGTGCAGTTGATGCACAAAAATTTAAAAAACATGTAAGCATTCATGTACATATTTTATAAAATTTAAATAACTAATATATATAATTTGTAGGCGTGTTGGACTGTCACAGTTCTATTGCTCAGAGGAGGATACTATTGAAT
****************************************************************************************************(((......(((...((((((............((((......))))............)))))).))))))********************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V105
male body		 M058
embryo
 V106
head
 V055
head
 V039
embryo
....................................................................................................................................................................................................................................................................................................................GTAGGCGGTTTGGACAGTCA.................................. 20 3 4 15.50 62 24 31 0 6 1 0
....................................................................................................................................................................................................................................................................................................................GTAGGCGGTTTGGACAGTC................................... 19 3 12 6.42 77 28 38 0 10 1 0
...................................................................................................................................................................................................................................................................................................................TGTAGGCGGTTTGGACAGTC................................... 20 3 3 5.67 17 2 12 0 3 0 0
...................................................................................................................................................................................................................................................................................................................TGTAGGCGGTTTGGACAGTCA.................................. 21 3 2 5.00 10 5 4 0 1 0 0
.............................................TCCAGGTATATCCAGATAGGAGCACGA.................................................................................................................................................................................................................................................................................................. 27 0 1 3.00 3 3 0 0 0 0 0
......................................................................................................................................................AAGGATTCCAGCAAAACCCTTG.............................................................................................................................................................................................. 22 0 4 3.00 12 12 0 0 0 0 0
....................................................................................................CGAAAGAGTGGGCGCTTTGCTAG............................................................................................................................................................................................................................................... 23 0 3 2.33 7 6 0 0 0 0 1
...............................................................................................................................................................................................................................................................................................................................................ATTGCTCAGAGGAGGATACTATTGA.. 25 0 2 2.00 4 4 0 0 0 0 0
.....TTTCAGTTGCTCAGCTTGGAATC.............................................................................................................................................................................................................................................................................................................................................. 23 0 3 2.00 6 2 0 3 0 0 1
.....TTTCAGTTGCTCAGCTTGGAATCC............................................................................................................................................................................................................................................................................................................................................. 24 0 3 2.00 6 4 0 2 0 0 0
.....................................................................................................GAAAGAGTGGGCGCTTTGCTAG............................................................................................................................................................................................................................................... 22 0 3 1.33 4 4 0 0 0 0 0
.....TTTCAGTTGCTCAGCTTGGAATCCTT........................................................................................................................................................................................................................................................................................................................................... 26 0 3 1.33 4 4 0 0 0 0 0
....................................................................................................CGAAAGAGTGGGCGCTTTGCTAGT.............................................................................................................................................................................................................................................. 24 0 3 1.33 4 4 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................ATTGCTCAGAGGAGGATACTATTGAA. 26 0 2 1.00 2 2 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................GACTGTCACAGTTCTATTGCTC.................... 22 0 1 1.00 1 0 0 1 0 0 0
.............................................TCAAGGTATATCCAGATAGGAGC...................................................................................................................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................AACCCACAAAAGGCCATGCAATTCG................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0
.....................................................TATCCAGATAGGAGCACGATT................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...........................................GGTCCAGGTATATCCAGATAGG......................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................CGAAAGAGTGGGCGCTTTGCTA................................................................................................................................................................................................................................................ 22 0 3 1.00 3 3 0 0 0 0 0
............................................................................................................................................................................................CATTCAATTCGTGGCGATATTGGC...................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................................ATTGCTCAGAGGAGGATACTAT..... 22 0 2 1.00 2 2 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................CACAGTTCTATTGCTCAGAGGA.............. 22 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................ATGTCAGCGTGAAAGAAGG................................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................................GAAAGAGTGGGCGCTTTGCTAGT.............................................................................................................................................................................................................................................. 23 0 3 1.00 3 2 0 0 0 0 1
......................................................................................................................................................AAGGATTCCAGCAAAACCCTTGTTA........................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GTCACAGTTCTATTGCTCAGAGGAGGA........... 27 0 1 1.00 1 0 0 0 1 0 0
..............................................CCAGGTATATCCAGATAGGA........................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................AAGGATTCCAGCAAAACCCTTGT............................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0
...........................................GTTCCAGGTATATCCAGATAGG......................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................ATTGCTCAGAGGAGGATACTATTG... 24 0 2 1.00 2 2 0 0 0 0 0
............................................TTCCAGGTATATCCAGATAGGAGCACG................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................CTAGTTAGCAAAACCCATGTCAGAG.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
............................................TTCCAGGTATATCCAGATAGGAGCACGA.................................................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................CACAGTTCTATTGCTCAGAGGAG............. 23 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GTCACAGTTCTATTGCTCAGAGGAGG............ 26 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TGTAGGCGGTTTGGACAGT.................................... 19 3 17 0.94 16 4 11 0 1 0 0
.....TTTCAGTTGCTCAGCTTGGAATCCTTTG......................................................................................................................................................................................................................................................................................................................................... 28 0 3 0.67 2 2 0 0 0 0 0
...............TCAGCTTGGAATCCTTTGTGAGG.................................................................................................................................................................................................................................................................................................................................... 23 0 3 0.67 2 2 0 0 0 0 0
...............TCAGCTTGGAATCCTTTGTGAGGAACG................................................................................................................................................................................................................................................................................................................................ 27 0 3 0.67 2 1 0 0 1 0 0
.....TTTCAGTTGCTCAGCTTGGAATCCT............................................................................................................................................................................................................................................................................................................................................ 25 0 3 0.67 2 2 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TTGTAGGCGTGTTGGACTGTC................................... 21 0 2 0.50 1 1 0 0 0 0 0
...............................TGTGAGGAACGTGTTCCAGGGATATC................................................................................................................................................................................................................................................................................................................. 26 1 2 0.50 1 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TGCTCAGAGGAGGATACTATTGA.. 23 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................GGAAGAAGGATTCCAGCAAAACC.................................................................................................................................................................................................. 23 0 2 0.50 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................ATAATTTGTAGGCGTGTTGGAC....................................... 22 0 2 0.50 1 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................................ATTGCTCATAGGAGGATACTATTGA.. 25 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................ATGTTGGACTGTCACATATCT........................... 21 3 2 0.50 1 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................................................................GTTGCTCAGAGGAGGATACTATTG... 24 1 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................ACTGCTCAGAGGAGGATACTATTG... 24 1 2 0.50 1 1 0 0 0 0 0
.....TTTCAGTTGCTCAGCTTGGAA................................................................................................................................................................................................................................................................................................................................................ 21 0 5 0.40 2 1 0 1 0 0 0
...............TCAGCTTGGAATCCTTTGTGAGGAACGT............................................................................................................................................................................................................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................CGAAAGAGTGGGCGCTTTGCTAGA.............................................................................................................................................................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0
....................................................................................................CGAAAGAGTGGGCGCTTTGC.................................................................................................................................................................................................................................................. 20 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................CGAAAGAGAGGGCGCTTTGCTAGT.............................................................................................................................................................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0
......TTCAGTTGCTCAGCTTGGAATCC............................................................................................................................................................................................................................................................................................................................................. 23 0 3 0.33 1 1 0 0 0 0 0
.......TTAGTTGCTCAGCTTGGAATCCTTT.......................................................................................................................................................................................................................................................................................................................................... 25 1 3 0.33 1 0 0 1 0 0 0
....................................................................................................CGAAAGAGGGGGCGCTTTGCTAGTTAGC.......................................................................................................................................................................................................................................... 28 1 3 0.33 1 1 0 0 0 0 0
......................................................................................................AAAGAGTGGCCGCTTTGCTAGTTAGCAA........................................................................................................................................................................................................................................ 28 1 3 0.33 1 1 0 0 0 0 0
.....................................................................................................GAAAGAGTGGGCGCTTTGCTAGTTAG........................................................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
.........................................................................................................GAGTGGGCGCTTTGCTAGTTAGCAAA....................................................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
.....................................................................................................GAAAGAGTGGGCGCTTTGCTAGTTTAT.......................................................................................................................................................................................................................................... 27 3 3 0.33 1 1 0 0 0 0 0
.....................................................................................................GAAAGAGAGGGCGCTTTGCTAG............................................................................................................................................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0
....................................................................................................CGAAAGAGGGGGCGCTTTGCTAG............................................................................................................................................................................................................................................... 23 1 3 0.33 1 1 0 0 0 0 0
....................................................................................................CGAAAGAGTGGGCGCTTTGCTAGTTA............................................................................................................................................................................................................................................ 26 0 3 0.33 1 1 0 0 0 0 0
.....TTTCAGTTGCTCAGCTTGGTATCCTT........................................................................................................................................................................................................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0
.................................................................................................TTTCGAAAGAGTGGGCGCTTTGCTTTT.............................................................................................................................................................................................................................................. 27 2 3 0.33 1 1 0 0 0 0 0
..................................................................................................TTCGAAAGAGTGGGCGCTTTGC.................................................................................................................................................................................................................................................. 22 0 3 0.33 1 1 0 0 0 0 0
.....TTTCAGTTGCTCAGCTTGGAATCCTTT.......................................................................................................................................................................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0
.....................................................................................................GAAAGAGTGGGCGCTTTGCTAGTTA............................................................................................................................................................................................................................................ 25 0 3 0.33 1 1 0 0 0 0 0
........GAGTTGCTAAGCTTGGAATCCTTTG......................................................................................................................................................................................................................................................................................................................................... 25 2 3 0.33 1 1 0 0 0 0 0
...........................................................................TAAAATGGTTGAATTCGAACCATT....................................................................................................................................................................................................................................................................... 24 0 3 0.33 1 0 0 1 0 0 0
....................................................................................................CGAAAGAGTGGGCGCTTTGCT................................................................................................................................................................................................................................................. 21 0 3 0.33 1 0 1 0 0 0 0
....................................................................................................CGAAAGAGTGGGCGCTTTGCTAGTT............................................................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0
............TGATCAGCTTGGAATCCTTTGTGAGGAAC................................................................................................................................................................................................................................................................................................................................. 29 1 3 0.33 1 0 0 1 0 0 0
........GAGTTGCTCAGCTTGGAATCCTTTG......................................................................................................................................................................................................................................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0 0
...............TCAGCTTGGAATCCTTTGTTAGG.................................................................................................................................................................................................................................................................................................................................... 23 1 3 0.33 1 0 0 0 0 0 1
.........................................................................................................GAGTGGGCGCTTTGCTAG............................................................................................................................................................................................................................................... 18 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................CTAAAGAGTGGGCGCTTTGCTAG............................................................................................................................................................................................................................................... 23 1 3 0.33 1 0 0 1 0 0 0
.................................................................................................TGTCGAAAGAGTGGGCGCTTTGCTAGT.............................................................................................................................................................................................................................................. 27 1 3 0.33 1 0 0 1 0 0 0
....................................................................................................CAAAAGAGTGGGCGCTTTGCTAGA.............................................................................................................................................................................................................................................. 24 2 3 0.33 1 0 1 0 0 0 0
.....TTTCAGTTGCTCAGCTTGGAGT............................................................................................................................................................................................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0
......................................................................................................................................................AAGGATTCCAGCAAAACCCTTC.............................................................................................................................................................................................. 22 1 4 0.25 1 1 0 0 0 0 0
.....TTTCAGTTGCTCAGCTTGGAAT............................................................................................................................................................................................................................................................................................................................................... 22 0 4 0.25 1 0 0 1 0 0 0
.......................................................................................................................................................AGGATTCCAGCAAAACCCTTG.............................................................................................................................................................................................. 21 0 4 0.25 1 1 0 0 0 0 0
......................................................................................................................................................AAGGATTCCAGCAAAACCCTT............................................................................................................................................................................................... 21 0 4 0.25 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................GTAGGCGGTTTGGACCGTCAC................................. 21 3 4 0.25 1 0 0 0 0 1 0
....................................................................................................................................................................................................................................................................................................................GTAGGCGTTTTGGACAGTC................................... 19 2 5 0.20 1 1 0 0 0 0 0
.....TTTCAGTTGCTCAGCTTGG.................................................................................................................................................................................................................................................................................................................................................. 19 0 5 0.20 1 0 1 0 0 0 0
......................................AACGTGATCTAGGTATTTCC................................................................................................................................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................................TAGGCGGTTTGGACAGTCA.................................. 19 3 15 0.13 2 2 0 0 0 0 0
.........................................................................................................................................................................TCGTGAACCCGCAAAAGGCC............................................................................................................................................................................. 20 3 10 0.10 1 0 0 1 0 0 0
.............................................................................ATGTGGTTTAATTCGAACC.......................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 1 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................AGGCGGTTTGGACTGTC................................... 17 2 11 0.09 1 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................................................................................TATTGCTCAGAGGGGAATG......... 19 3 19 0.05 1 0 0 0 0 1 0
.........................TTGCTTTCTGAGGAACGTG.............................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0
..........................................................................................................................................TGAAAGGGGAAGAAGGATTC............................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

ATTGAAAAGTCAACGAGTCGAACCTTAGGAAACACTCCTTGCACAAGGTCCATATAGGTCTATCCTCGTGCTAAAATTTTACCAACTTAAGCTTGGTAAAGCTTTCTCACCCGCGAAACGATCAATCGTTTTGGGTACAGTCTCACCTTCTTCCTAAGGTCGTTTTGGGAACAATTGGGTGTTTTCCGGTAAGTTAAGCACCGCTATAACCGGTGATAGTAACACGTCAACTACGTGTTTTTAAATTTTTTGTACATTCGTAAGTACATGTATAAAATATTTTAAATTTATTGATTATATATATTAAACATCCGCACAACCTGACAGTGTCAAGATAACGAGTCTCCTCCTATGATAACTTA
**********************************************************************************************************************************************************************************************(((......(((...((((((............((((......))))............)))))).))))))**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V105
male body
......................................................................................................................................GTACAGTCTCACCTTCTTCCTAAGGT.......................................................................................................................................................................................................... 26 0 1 23.00 23 23 0 0 0
.....................................................................................................................................GGTACAGTCTCACCTTCTTCCTAAGGT.......................................................................................................................................................................................................... 27 0 1 15.00 15 15 0 0 0
.......................................................................................................................................TACAGTCTCACCTTCTTCCTAAGGT.......................................................................................................................................................................................................... 25 0 1 6.00 6 6 0 0 0
...........................GGAAACACTCCTTGCACAAGGTCCATAT................................................................................................................................................................................................................................................................................................................... 28 0 2 4.00 8 7 1 0 0
.....................................................................................................................................GGTACAGTCTCACCTTCTTCCTAAGG........................................................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0
..................................................................................................................................................................................................................CGGTGATAGTAACACGTCAACTAC................................................................................................................................ 24 0 1 3.00 3 3 0 0 0
........................................................................................................................................ACAGTCTCACCTTCTTCCTAAGGT.......................................................................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0
.............................AAACACTCCTTGCACAAGGTCCATAT................................................................................................................................................................................................................................................................................................................... 26 0 2 2.50 5 5 0 0 0
......................................................................................................................................GTACAGTCTCACCTTCTACCTAAGGT.......................................................................................................................................................................................................... 26 1 1 2.00 2 2 0 0 0
...................................................................................................................................................................................................................GGTGATAGTAACACGTCAACTAC................................................................................................................................ 23 0 1 2.00 2 2 0 0 0
..................................................................................................................................................................................................TAAGCACCGCTATAACCGGTGATAGT.............................................................................................................................................. 26 0 1 2.00 2 2 0 0 0
...............................................................................................................................................................................................................AACCGGTGATAGTAACACGTCAACTAC................................................................................................................................ 27 0 1 2.00 2 2 0 0 0
............................GAAACACTCCTTGCACAAGGTCCATAT................................................................................................................................................................................................................................................................................................................... 27 0 2 2.00 4 4 0 0 0
.................................................................................................................................................................................................................CCGGTGATAGTAACACGTCAACTAC................................................................................................................................ 25 0 1 2.00 2 1 1 0 0
..........CAACGAGTCGAACCTTAGGAAACACT...................................................................................................................................................................................................................................................................................................................................... 26 0 3 1.33 4 0 4 0 0
.....................................................ATAGGTCTATCCTCGTGCTAAAATTTTA......................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
.......................................TGCACAAGGTCCATATAGGTCTATC.......................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................CCGCACAACCTGACAGTGTCAAGA........................... 24 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................ACCGGTGATAGTAACACGTCAACTAC................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
..............................AACACTCCTTGCACAAGGTCCATAT................................................................................................................................................................................................................................................................................................................... 25 0 2 1.00 2 2 0 0 0
..........................................................................................................................................AGTCTCACCTTCTTCCTAAGGTCGT....................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
......................................................................................................................................GTACAGTCTCACCTTCTTCCTAAGG........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................AACCTGACAGTGTCAAGATAACGAGT................... 26 0 1 1.00 1 1 0 0 0
..........................AGGAAACACTCCTTGCACAAGGTCCATAT................................................................................................................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................AACCTGACAGTGTCAAGATAACGAGTCT................. 28 0 1 1.00 1 1 0 0 0
...............................................................CCTCGTGCTAAAATTTTACCAACTTAAG............................................................................................................................................................................................................................................................................... 28 0 2 1.00 2 1 1 0 0
................................................................................................................................................................................................................................................................................................................................CTGACAGTGTCAAGATAACGAGTCT................. 25 0 1 1.00 1 1 0 0 0
........................................................................................................................................ACAGTCTCACCTTCTTCCTAAAGTCGTTT..................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................TTCCGGTAAGTTAAGCACCGCTATAA......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
.........................TAGGAAACACTCCTTGCACGAGGTCCAT..................................................................................................................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0
........................................................................................................................................GCAGTCTCACCTTCTTCCTAAGGT.......................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0
.....................................................................................................................................GGTACAGTCTCACCTTCTTCCTAA............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................CCTGACAGTGTCAAGATAACGAGTCT................. 26 0 1 1.00 1 1 0 0 0
.......................................TGCACAAGGTCCATATAGGTCTAT........................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................TAACCGGTGATAGTAACACGTCAACTAC................................................................................................................................ 28 0 1 1.00 1 0 1 0 0
...........................................................CTATCCTCGTGCTAAAATTTTACCAA..................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0
.................................................................................................................................................................................................................................................................................................................................TGACAGTGTCAAGATAACGAGTCT................. 24 0 1 1.00 1 0 1 0 0
........................................................................................................................................ACAGTCTCACCTTCTTCCTAAGG........................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................................................................................................................CGCACAACCTGACAGTGTCAAGAT.......................... 24 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................GGAACAATTGGGTGTTTTCCGGTAA.......................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..........................AGGAAACACTCCTTGCACAAGGTCCAT..................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0
....................................................................................................................................................................................................................GTGATAGTAACACGTCAACTACGT.............................................................................................................................. 24 0 1 1.00 1 1 0 0 0
.........................TAGGAAACACTCCTTGCACAAGGTCCAT..................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
.....................................CTTGCACAAGGTCCATATAGGTCTAT........................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................ACCGGTGATAGTAACACGTCAACTA................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
.......................................................................................................................................TACAGTCTCACCTTCTTCCTAAGGA.......................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0
.....................................................................................................................................GGTACAGTCTCACCTTCTCCCTAAGGT.......................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
......................................................................................................................................GTACAGTCTCACCTTCTGCCTAAGGT.......................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................................CAAGATAACGAGTCTCCTCCTATGAT...... 26 0 1 1.00 1 1 0 0 0
..................................CTCCTTGCACAAGGTCCATAAAGGTCTAT........................................................................................................................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0
...........................................................CTATCCTCGTGCTAAAATTTTACCAACTT.................................................................................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0
.....................................................................................................................................GGTACAGTCTCACCTTCTGCCTAAGGT.......................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
............ACGAGTCGAACCTTAGGAAACACT...................................................................................................................................................................................................................................................................................................................................... 24 0 3 0.67 2 2 0 0 0
..................................CTCCTTGCACAAGGTCCATATAGGTC.............................................................................................................................................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0
..................................................................CGTGCTAAAATTTTACCAACTTAAG............................................................................................................................................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0
...............................ACACTCCTTGCACAAGGTCCATATAGGT............................................................................................................................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0
......................................................................................TTAAGCTTGGTAAAGCTTTCTCACC........................................................................................................................................................................................................................................................... 25 0 4 0.50 2 0 2 0 0
................................CACTCCTTGCACAAGGTCCATATAGGT............................................................................................................................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0
...............................ACACTCCTTGCACAAGGTCCATAT................................................................................................................................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
..................................................................CGTGCTAAAATTTTACCAACTTAAGCTT............................................................................................................................................................................................................................................................................ 28 0 2 0.50 1 0 1 0 0
...................................................................................................................................................................................................................................................................................................................ACATCCGCACAACCTGACAGTGTCAA............................. 26 0 2 0.50 1 1 0 0 0
.................................ACTCCTTGCACAAGGTCCATATA.................................................................................................................................................................................................................................................................................................................. 23 0 2 0.50 1 1 0 0 0
ATTGAAAAGTCAACGAGTCGAACCT................................................................................................................................................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0
.............................................................................................................TCCGCGAAACGATCAATCGTTTT...................................................................................................................................................................................................................................... 23 1 2 0.50 1 0 1 0 0
.......AGTCAACGAGTCGAACCTTAGGAAACA........................................................................................................................................................................................................................................................................................................................................ 27 0 3 0.33 1 1 0 0 0
.......AGTCAACGAGTCGAACCTTAGGAAAC......................................................................................................................................................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
..................CGAACCTTAGGAAACACTCCTTGCACAA............................................................................................................................................................................................................................................................................................................................ 28 0 3 0.33 1 1 0 0 0
........GTCAACGAGTCGAACCTTAGGAAACACT...................................................................................................................................................................................................................................................................................................................................... 28 0 3 0.33 1 1 0 0 0
.........TCAACGAGTCGAACCTTAGGAAA.......................................................................................................................................................................................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0
.....................................................................................................CTTTCTCACCCGCGAAACGATCAATCGTT........................................................................................................................................................................................................................................ 29 0 3 0.33 1 1 0 0 0
.............CGAGTCGAACCTTAGGAAACACTCCTT.................................................................................................................................................................................................................................................................................................................................. 27 0 3 0.33 1 0 1 0 0
.........TCAACGAGTCGAACCTTAGGAAACACT...................................................................................................................................................................................................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0
................GTCGAACCTTAGGAAACACTC..................................................................................................................................................................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0
........GTCAACGAGTCGAACCTTAGGAAACACTC..................................................................................................................................................................................................................................................................................................................................... 29 0 3 0.33 1 1 0 0 0
.....................................................................................CTTAAGCTTGGTAACGCTTTCTCACC........................................................................................................................................................................................................................................................... 26 1 3 0.33 1 0 0 1 0
..................CGAACCTTAGGAACCACTCCTTGCAC.............................................................................................................................................................................................................................................................................................................................. 26 1 3 0.33 1 0 1 0 0
.............CGAGTCGAACCTTAGGAAACACTCCT................................................................................................................................................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
...........................GGAAACACTCCTTGCACAAGGTCCAAAT................................................................................................................................................................................................................................................................................................................... 28 1 4 0.25 1 0 1 0 0
......................................................................................TTAAGCTTGGTAAAGCTTTCTCACCC.......................................................................................................................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................................CCAACTACGTGTTTTCAAA..................................................................................................................... 19 2 4 0.25 1 0 1 0 0
......................................................................................TTAAGCTTGGTAAAGCTTTCTCAC............................................................................................................................................................................................................................................................ 24 0 4 0.25 1 1 0 0 0
......................................................................................TTAAGCTTGGTAAAGCTTTCTAAC............................................................................................................................................................................................................................................................ 24 1 4 0.25 1 0 1 0 0
.....AAAGTCAACGAGTCGAACCTT................................................................................................................................................................................................................................................................................................................................................ 21 0 5 0.20 1 0 1 0 0
.......AGTCAACGAGTCGAACCT................................................................................................................................................................................................................................................................................................................................................. 18 0 5 0.20 1 0 1 0 0
...............................................................................................................CGAGAAACGATCAAGCGAT........................................................................................................................................................................................................................................ 19 3 18 0.17 3 0 3 0 0
................................................................................................................................................................................................................................CCACAACTACGTGTTTTCAAA..................................................................................................................... 21 3 7 0.14 1 0 1 0 0
....................................................................................................................................................................................................................................................................................................................CAACGGCACAACCTGACA.................................... 18 2 8 0.13 1 0 1 0 0
...................................................................................................................................................................TTTGGGAAGAAGTGGGTG..................................................................................................................................................................................... 18 2 15 0.07 1 0 0 0 1
.................................................................................................................................................................CTATTGGGAACAATTGGC....................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12911:5012929-5013290 + dan_448 TAACT---TTTCAGTTGCTCAGCTTGGAATCCTTTGTGAGGAACGTGTTCCAGGTATATCCAGATAGGAGCACGATTTTAAAATGGTTGAATTCGAACCATTTCGAAAGAGTGGGCGCTTTGCTAGTTAGCAAAACCCATGTCAGAGTGGAAGAAGGATTCCA--------GCAAAACCCTTGTTAACCCACAAAAGGCCATTCAATTCGTGGCGATATTGGCCACTATCATTGTGCAGTTGATGCACAAAAATTTAAAAAACATGTAAGCATTCATGTACATATTTTATAAAATTTAAATAACTAAT--ATATATA-ATTTGTAG------GCGTGTTGGACTGTCACAGTTCTATTG--CTCAGAGGAGGATACTAT------TGAAT
droBip1 scf7180000396741:1044102-1044478 + TCATTAATCTTAGCTTGTTTCCCTCGGGTGCCTATTTG-GTAATCTGTTCAATCGATTCCCAAATAAGACATTCAGTCTAACATTGGTAAATTCCAATTACATGGAAGAATTGGGTGCCAAGCTGGCCCATGATGTCCATCTTGCGGCAGAGGAGGGCTTCGCGAAATTCCCAGAAGCCCTTGCCGATCCA---AAGGCAGCTGCCTTCATGGCTACATTGGCAACGATCTATGTCCAGAGAATTCACAAAGAACTTAAGGAAATGTAAGTATTCATGTT---A-TC---ATATATCATAAAA--AATATATATAATTTTTTTTTCAGGCACATGGATTTCGCGGTCACCGATTTACTAATCCCAGACGAGAAGACAAGGAAGGATGACG
droRho1 scf7180000777158:5534-5589 + AAAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAACACTTTTTC----------------------AAAATTTAAACAATTAAT--ATATATATATTTTTAG----------------------------------------------------------------
dm3 chrX:8069280-8069325 + GGAGTTT-----------------------------------------------------------------------------------------------------------------TGTTAGTTAGGAAGACAGACGACAGAGTGTGAGAGAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_1337:1591-1678 - AATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAAAAATATATAAAAATTTGAAGAAATATTCAAAAATTTTAAAATATCACAT--TTTTCAA-CACTGTGG------GCGTGA----------CAGTTTTA----------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TAACT---TTTCAGTTGCTCAGCTTGGAATCCTTTGTGAGGAACGTGTTCCAGGTATATCCAGATAGGAGCACGATTTTAAAATGGTTGAATTCGAACCATTTCGAAAGAGTGGGCGCTTTGCTAGTTAGCAAAACCCATGTCAGAGTGGAAGAAGGATTCCA--------GCAAAACCCTTGTTAACCCACAAAAGGCCATTCAATTCGTGGCGATATTGGCCACTATCATTGTGCAGTTGATGCACAAAAATTTAAAAAACATGTAAGCATTCATGTACATATTTTATAAAATTTAAATAACTAAT--ATATATA-ATTTGTAG------GCGTGTTGGACTGTCACAGTTCTATTG--CTCAGAGGAGGATACTAT------TGAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................TCCAGGTATATCCAGATAGGAGCACGA...........................................................................................................................................................................................................................................................................................................................2713.003300000
.........................................................................................................................................................AAGGATTCCA--------GCAAAACCCTTG...............................................................................................................................................................................................................2243.00121200000
.......................................................................................................CGAAAGAGTGGGCGCTTTGCTAG........................................................................................................................................................................................................................................................................2332.337601000
...................................................................................................................................................................................................................................................................................................................................................................ATTG--CTCAGAGGAGGATACTAT------TGA..2522.004400000
........TTTCAGTTGCTCAGCTTGGAATC.......................................................................................................................................................................................................................................................................................................................................................................2332.006231000
........TTTCAGTTGCTCAGCTTGGAATCC......................................................................................................................................................................................................................................................................................................................................................................2432.006420000
........................................................................................................GAAAGAGTGGGCGCTTTGCTAG........................................................................................................................................................................................................................................................................2231.334400000
........TTTCAGTTGCTCAGCTTGGAATCCTT....................................................................................................................................................................................................................................................................................................................................................................2631.334400000
.......................................................................................................CGAAAGAGTGGGCGCTTTGCTAGT.......................................................................................................................................................................................................................................................................2431.334400000
...................................................................................................................................................................................................................................................................................................................................................................ATTG--CTCAGAGGAGGATACTAT------TGAA.2621.002200000
....................................................................................................................................................................................................................................................................................................................................................GACTGTCACAGTTCTATTG--CTC..........................2211.001010000
........................................................TATCCAGATAGGAGCACGATT.........................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................CGAAAGAGTGGGCGCTTTGCTA.........................................................................................................................................................................................................................................................................2231.003300000
.......................................................................................................................................................................................................CATTCAATTCGTGGCGATATTGGC.......................................................................................................................................................................2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................ATTG--CTCAGAGGAGGATACTAT------.....2221.002200000
..........................................................................................................................................................................................................................................................................................................................................................CACAGTTCTATTG--CTCAGAGGA....................2211.001100000
........................................................................................................GAAAGAGTGGGCGCTTTGCTAGT.......................................................................................................................................................................................................................................................................2331.003201000
.........................................................................................................................................................AAGGATTCCA--------GCAAAACCCTTGTTA............................................................................................................................................................................................................2511.001100000
........................................................................................................................................................................................................................................................................................................................................................GTCACAGTTCTATTG--CTCAGAGGAGGA.................2711.001000001
.................................................CCAGGTATATCCAGATAGGA.................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................................................................................................................................................AAGGATTCCA--------GCAAAACCCTTGT..............................................................................................................................................................................................................2311.001010000
..............................................GTTCCAGGTATATCCAGATAGG..................................................................................................................................................................................................................................................................................................................................2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................ATTG--CTCAGAGGAGGATACTAT------TG...2421.002200000
...............................................TTCCAGGTATATCCAGATAGGAGCACG............................................................................................................................................................................................................................................................................................................................2711.001010000
..........................................................................................................................CTAGTTAGCAAAACCCATGTCAGAG...................................................................................................................................................................................................................................................2511.001100000
...............................................TTCCAGGTATATCCAGATAGGAGCACGA...........................................................................................................................................................................................................................................................................................................................2811.001100000
..........................................................................................................................................................................................................................................................................................................................................................CACAGTTCTATTG--CTCAGAGGAG...................2311.001000010
........................................................................................................................................................................................................................................................................................................................................................GTCACAGTTCTATTG--CTCAGAGGAGG..................2611.001100000
........TTTCAGTTGCTCAGCTTGGAATCCTTTG..................................................................................................................................................................................................................................................................................................................................................................2830.672200000
..................TCAGCTTGGAATCCTTTGTGAGG.............................................................................................................................................................................................................................................................................................................................................................2330.672200000
..................TCAGCTTGGAATCCTTTGTGAGGAACG.........................................................................................................................................................................................................................................................................................................................................................2730.672100001
........TTTCAGTTGCTCAGCTTGGAATCCT.....................................................................................................................................................................................................................................................................................................................................................................2530.672200000
................................................................................................................................................................................................................................................................................................................................TTGTAG------GCGTGTTGGACTGTC...........................................2120.501100000
.....................................................................................................................................................................................................................................................................................................................................................................TG--CTCAGAGGAGGATACTAT------TGA..2320.501100000
....................................................................................................................................................GGAAGAAGGATTCCA--------GCAAAACC...................................................................................................................................................................................................................2320.501010000
..........................................................................................................................................................................................................................................................................................................................ATA-ATTTGTAG------GCGTGTTGGAC...............................................2220.501010000
........TTTCAGTTGCTCAGCTTGGAA.........................................................................................................................................................................................................................................................................................................................................................................2150.402110000
..................TCAGCTTGGAATCCTTTGTGAGGAACGT........................................................................................................................................................................................................................................................................................................................................................2830.331100000
.......................................................................................................CGAAAGAGTGGGCGCTTTGCTAGA.......................................................................................................................................................................................................................................................................2430.331100000
.......................................................................................................CGAAAGAGTGGGCGCTTTGC...........................................................................................................................................................................................................................................................................2030.331100000
.........TTCAGTTGCTCAGCTTGGAATCC......................................................................................................................................................................................................................................................................................................................................................................2330.331100000
........................................................................................................GAAAGAGTGGGCGCTTTGCTAGTTAG....................................................................................................................................................................................................................................................................2630.331100000
............................................................................................................GAGTGGGCGCTTTGCTAGTTAGCAAA................................................................................................................................................................................................................................................................2630.331100000
........................................................................................................GAAAGAGTGGGCGCTTTGCTAGTTTAT...................................................................................................................................................................................................................................................................2730.331100000
.......................................................................................................CGAAAGAGTGGGCGCTTTGCTAGTTA.....................................................................................................................................................................................................................................................................2630.331100000
.....................................................................................................TTCGAAAGAGTGGGCGCTTTGC...........................................................................................................................................................................................................................................................................2230.331100000
........TTTCAGTTGCTCAGCTTGGAATCCTTT...................................................................................................................................................................................................................................................................................................................................................................2730.331100000
........................................................................................................GAAAGAGTGGGCGCTTTGCTAGTTA.....................................................................................................................................................................................................................................................................2530.331100000
..............................................................................TAAAATGGTTGAATTCGAACCATT................................................................................................................................................................................................................................................................................................2430.331010000
.......................................................................................................CGAAAGAGTGGGCGCTTTGCT..........................................................................................................................................................................................................................................................................2130.331000010
.......................................................................................................CGAAAGAGTGGGCGCTTTGCTAGTT......................................................................................................................................................................................................................................................................2530.331100000
............................................................................................................GAGTGGGCGCTTTGCTAG........................................................................................................................................................................................................................................................................1830.331100000
.........................................................................................................................................................AAGGATTCCA--------GCAAAACCCTTC...............................................................................................................................................................................................................2240.251100000
........TTTCAGTTGCTCAGCTTGGAAT........................................................................................................................................................................................................................................................................................................................................................................2240.251010000
..........................................................................................................................................................AGGATTCCA--------GCAAAACCCTTG...............................................................................................................................................................................................................2140.251100000
.........................................................................................................................................................AAGGATTCCA--------GCAAAACCCTT................................................................................................................................................................................................................2140.251010000
........TTTCAGTTGCTCAGCTTGG...........................................................................................................................................................................................................................................................................................................................................................................1950.201000010
droBip1
TCATTAATCTTAGCTTGTTTCCCTCGGGTGCCTATTTG-GTAATCTGTTCAATCGATTCCCAAATAAGACATTCAGTCTAACATTGGTAAATTCCAATTACATGGAAGAATTGGGTGCCAAGCTGGCCCATGATGTCCATCTTGCGGCAGAGGAGGGCTTCGCGAAATTCCCAGAAGCCCTTGCCGATCCA---AAGGCAGCTGCCTTCATGGCTACATTGGCAACGATCTATGTCCAGAGAATTCACAAAGAACTTAAGGAAATGTAAGTATTCATGTT---A-TC---ATATATCATAAAA--AATATATATAATTTTTTTTTCAGGCACATGGATTTCGCGGTCACCGATTTACTAATCCCAGACGAGAAGACAAGGAAGGATGACGSizeHit CountTotal NormTotal
No Reads
droRho1
AAAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAACACTTTTTC----------------------AAAATTTAAACAATTAAT--ATATATATATTTTTAG----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GGAGTTT-----------------------------------------------------------------------------------------------------------------TGTTAGTTAGGAAGACAGACGACAGAGTGTGAGAGAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................AGAGTGTGAGAGAAC........................................................................................................................................................................................................................................15161.632600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000125000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAAAAATATATAAAAATTTGAAGAAATATTCAAAAATTTTAAAATATCACAT--TTTTCAA-CACTGTGG------GCGTGA----------CAGTTTTA----------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:32 PM