ID:

dan_422

 Coordinate:

scaffold_12911:4016746-4016896 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.2 0.4

Flybase annnotation

CDS [Dana\GF23290-cds]; exon [dana_GLEANR_7946:4]; intron [Dana\GF23290-in]

Repeatable elements

NameClassFamilyStrand
(CAAT)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTATTATGCGTTTTTTACATTTTATTTTCCATATCAATCAATAAATCAATCAATCAATCAATCAACCCACCCCGACCAAAATAAAAACAAAAACAAAAAAACACTTGAAATGCACGCACCACACAAAAAAAACACAAAAAAAAAACAATGAAAAATGAATCACCATCCACCACCCTGCCTGGTTGTGTTGTGGTTGGAAGTCGGTGCCCACGGTGTACAAGTCAAGTAGCGCATACTCATCCGCCAAATA
*************************************************************************************************************************......................................................**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
.................................................................................................................................................................................GCCTGGTTGTGTTGTGGTTGGAAGTC................................................ 26 0 1 1.00 1 0 0 1 0
....................................................................................................................................................................................................GGAAGTCGGTGCCCACGGT.................................... 19 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................AATGAATCACCATCCACCACC............................................................................ 21 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................CAAGTCAAGTAGCGCATACTCATC......... 24 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................................CGGTGTACAAGTCGAGTGGCGCATAC.............. 26 2 1 1.00 1 0 1 0 0
...............................................................................................................................................................................................................................CAAGTAGCGCATACTCATCCGCCA.... 24 0 1 1.00 1 0 1 0 0
............................................................................................................................................AAAAAACAATGAAGAAAGAATCA........................................................................................ 23 2 1 1.00 1 1 0 0 0
..........................................................................GACCAAAAGAAAGACAAAAACA........................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0
.........................................................................................................................ACACAAAAAAAACACAAAAAA............................................................................................................. 21 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................ATGAAACACCATACACCAC............................................................................. 19 2 2 0.50 1 1 0 0 0
................................................................................ATTAAAAACAAAAACAAAAAAACA................................................................................................................................................... 24 1 2 0.50 1 1 0 0 0
...........................................................................................................................ACAAAAAAAACACAAAAAAA............................................................................................................ 20 0 2 0.50 1 1 0 0 0
............................................................................................................AAAAGCACGCACCCCACGAAAA......................................................................................................................... 22 3 2 0.50 1 1 0 0 0
..........................................................................................................................................................................................................................CAAGTGAAGAAGCGCATA............... 18 2 5 0.40 2 2 0 0 0
...............................................................................................................................AAAAAACACAAAAAAAAAACA....................................................................................................... 21 0 3 0.33 1 1 0 0 0
.............................................................................................................................AAAAAAAACACAAAAAAAA........................................................................................................... 19 0 20 0.30 6 6 0 0 0
......................................................................................................................TCCACACAAAAAAAGCACAAAACA............................................................................................................. 24 3 4 0.25 1 1 0 0 0
.............................................................................................................................AAAAAAAACACAAAAAAAAA.......................................................................................................... 20 0 20 0.25 5 5 0 0 0
..........................................................................................................................................................CAAGAATCACCATCCACCA.............................................................................. 19 2 4 0.25 1 0 0 0 1
..............................................................................................................................AAAAAAACACAAAAAAAAA.......................................................................................................... 19 0 20 0.20 4 4 0 0 0
................................................................................AATAAAAACACAAACAAAAAAACC................................................................................................................................................... 24 2 6 0.17 1 1 0 0 0
.................................................................................................................................AAAACACAAAAAAAAAACA....................................................................................................... 19 0 13 0.15 2 2 0 0 0
............................................................................................................................CAAAAAAAACACAAAAAAA............................................................................................................ 19 0 7 0.14 1 1 0 0 0
..........................................................................GATCAAAATATAAACCAAAACAAA......................................................................................................................................................... 24 3 7 0.14 1 1 0 0 0
.......................................................................................................................................................................................................................GTTCAAGTGAAGAAGCGCAT................ 20 3 7 0.14 1 1 0 0 0
.......................................................CAATCAAACAACCCCCCCC................................................................................................................................................................................. 19 2 7 0.14 1 1 0 0 0
..................................................................................TGTAAACAAAAACAAAAAAACAC.................................................................................................................................................. 23 2 8 0.13 1 1 0 0 0
.............................................................................................................................AAAAAAAACACAAAAAAAAAA......................................................................................................... 21 0 17 0.12 2 2 0 0 0
............................................................................................................................................AAAAAACAAGAAAAAAAGAATCACC...................................................................................... 25 3 11 0.09 1 1 0 0 0
.......................................................................................................................CCACCCAAAAAAAACACCAAAA.............................................................................................................. 22 2 11 0.09 1 1 0 0 0
.......................................................................................................................................................................................................................GGTCAAGTCAAGAAGCGCAT................ 20 3 11 0.09 1 0 1 0 0
...........................................................................................................................ACAAAAAAAACACAAAAA.............................................................................................................. 18 0 12 0.08 1 0 0 0 1
...............................................................................AAATAAAAACAAAAACAAAA........................................................................................................................................................ 20 0 13 0.08 1 1 0 0 0
.............................................................................................................................AAAAAAAACACAAAAAAAACACA....................................................................................................... 23 1 14 0.07 1 1 0 0 0
................................................................................................................................................................................................................................AACTAGTGCATACTCAGCC........ 19 3 15 0.07 1 0 0 0 1
...........................................................................................................................ACAAAAAGAACACCAAAAAAAACC........................................................................................................ 24 3 17 0.06 1 1 0 0 0
..................................................................................................................................AAACACAAAAAAACAACAACGA................................................................................................... 22 2 17 0.06 1 1 0 0 0
............................................................................................................................CAAAAAGAACACAAAAAAAA........................................................................................................... 20 1 18 0.06 1 1 0 0 0
...........................................................................................................................ACAAAAAAAACACAGAAAA............................................................................................................. 19 1 20 0.05 1 1 0 0 0
....................................................................................AAAACAAAAACAAAAAAAC.................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0
..............................................................................................................................AGAAAAACACAAAAAAGAAACAA...................................................................................................... 23 2 20 0.05 1 1 0 0 0
............................................................................................................................CAAAAAAAACGCAAAAAAA............................................................................................................ 19 1 20 0.05 1 1 0 0 0
................................................................................................................................AAAAACACAAAAAAAACACA....................................................................................................... 20 1 20 0.05 1 1 0 0 0
..........................................................................................................................................................AAAGAACCACCATACACCAC............................................................................. 20 3 20 0.05 1 1 0 0 0
..............................................................................................................................AAAAAAACACAAAAAAAA........................................................................................................... 18 0 20 0.05 1 1 0 0 0
.................................................................................ATAGAAACAAAAACAAAAA....................................................................................................................................................... 19 1 20 0.05 1 1 0 0 0
..............................................................................................................................AAAAAAACACAAAAAAAAAA......................................................................................................... 20 0 20 0.05 1 1 0 0 0
.....................................................................................AAACAAACACAAAAAAAC.................................................................................................................................................... 18 1 20 0.05 1 1 0 0 0
............................................................................................................................CAAAAAAAACACCAAAAAAAA.......................................................................................................... 21 1 20 0.05 1 1 0 0 0
.................................................................................ATAACAACAAAAACAAAAAAA..................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0
.............................................................................................................................AAAAAAAACACAAAAAGACAACAA...................................................................................................... 24 2 20 0.05 1 1 0 0 0
........................................................................................................................................AAAAAAAGACCAATGAAAAAAGA............................................................................................ 23 3 20 0.05 1 0 0 0 1
....................................................................................AAAACAAAAACCAAAGAACAC.................................................................................................................................................. 21 2 20 0.05 1 1 0 0 0
...........................................................................................................................ACAAAAAAAACTCCAAAAAAAA.......................................................................................................... 22 2 20 0.05 1 1 0 0 0
............................................................................................................................CGAAAAAAACACAAAAAAA............................................................................................................ 19 1 20 0.05 1 1 0 0 0
...............................................................................................................................AAAAAACACAAAAAAAAA.......................................................................................................... 18 0 20 0.05 1 1 0 0 0
..........................................................................................AAGACAAAACAACCCTTGAA............................................................................................................................................. 20 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

AAATAATACGCAAAAAATGTAAAATAAAAGGTATAGTTAGTTATTTAGTTAGTTAGTTAGTTAGTTGGGTGGGGCTGGTTTTATTTTTGTTTTTGTTTTTTTGTGAACTTTACGTGCGTGGTGTGTTTTTTTTGTGTTTTTTTTTTGTTACTTTTTACTTAGTGGTAGGTGGTGGGACGGACCAACACAACACCAACCTTCAGCCACGGGTGCCACATGTTCAGTTCATCGCGTATGAGTAGGCGGTTTAT
****************************************************************************......................................................************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M058
embryo
 V105
male body		 V106
head
 M044
female body
 V039
embryo
...............GATGTAAAAAGAAAGGTATAGT...................................................................................................................................................................................................................... 22 3 3 0.67 2 2 0 0 0 0 0
................................................................................................................................................................................ACGAACCAACACCACACCAA....................................................... 20 2 3 0.33 1 0 1 0 0 0 0
..................GTAAGAGAAAAGGTATAGT...................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0
.................................................................................................................................................................GTGGCATTTGGTGGGACGGA...................................................................... 20 3 5 0.20 1 1 0 0 0 0 0
...........................................................................TGGTTTTATTTTTGTTTTTGG........................................................................................................................................................... 21 1 6 0.17 1 0 1 0 0 0 0
...........................................................................................................CTTTACTTGCGTGGTGAGAT............................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0
...................................................GTAAGGAAGTTAGTTGGGTG.................................................................................................................................................................................... 20 3 13 0.15 2 0 0 0 2 0 0
...............GATGTAAAAGGAAAGGTATAGT...................................................................................................................................................................................................................... 22 3 7 0.14 1 1 0 0 0 0 0
..............................................................................................................................................................GTAGCGGTTGGTGGTGGGAC......................................................................... 20 3 9 0.11 1 0 0 1 0 0 0
.....................................................................GGGGGCTGGTTATATTTT.................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 1 0
.........................................TATTTAGTTAGTTAGTAA................................................................................................................................................................................................ 18 1 14 0.07 1 0 0 0 0 0 1
..................................................................................................................................................................TGGTGGGCGGTGTGACGGAC..................................................................... 20 3 16 0.06 1 0 0 0 0 1 0
..........................................................AATTAGGTGGGTGGGGTTGG............................................................................................................................................................................. 20 3 18 0.06 1 0 0 1 0 0 0
................................ATGGTTAGTTATTAGGTTAGT...................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12911:4016696-4016946 + dan_422 TTT---ATTATGCGTTTT------TTACA-TTTTATT-TTCCATAT--CAATCAATAAA---TCAATC---AATCAATCAATC-A-------------------------------------------------------------------A---C-CCACCCCGACCAAAA-----TAAAA-A----------------C--------------------------AAAAACAAA---AAAA----CA--CTT-GAAA---------TG-------CACGCACCACA----CAAAAAAAA--CACAA-AAA--A--------AA-------------------A----AC---------------------------------AATGAAAAA-------------------------------------TGA-A--TCACCATCCACC------------------ACC----------CTGC-CTG-------GTT--GTGTTGT---GGTTGGAAGTCGGTGCCCACGGTGTACAAGTCAA-G---------------TAGCGCA---TACTCATCCGCCAAATA
droBip1 scf7180000396640:865168-865429 + TTT---ATTATGCGTTTT------TTACA-TTTTATT-TTCCATAT--CAATCAATTTACAATC-------AATCAATCAATC-A-------------------------------------------------------------------A---C-CCACCCCGACCAAAA-----TAAAA-T----------------CAAAAACAAACCAAAATCACAAAAACAAA---AACA---AAAA----CA--CT--AAAC-------AATG-------CACGCACCACA------CAACC-------A-CTA------------AA---------ACA-ACGA--A----AC---------------------------------AATA-CCAA-------------------------------------TGA---------A--TCACCA-----------------------------CTGC-CTG-------GTT--GTGTTGT---GGTTGGAAGTCGGTGCCGACGGTGTACAAGTCAA-G---------------TAGCGCA---TACTCATCCGCCAAATA
droKik1 scf7180000302466:523951-524218 - TTT---ATTATGCGTTTT-CT---TTACATTTTTGTTTTTCCAT----CAATAAA-------TCAATCGAT--TCAATCAACCCA---------------------------------------------------------------------------ACCCCGACCC----------------CTGACGTTA-------------------------CAACACCAAA---AAAA---AAAACACACA--CTGCAAAA---------TG-------C--ACAACACG----AAAACAC-------A-CAA---------------------------------------C---------------------------------AA--TCTAC-------------------------------------TGC-C--TCTGCCTCTGCCACCTGCCACCTGCTCCTTT--TTT-------TGGT-TTGGTGTGTGTAT-------GTGTGTGGACCAAGTCGGTGCCCACGGTTTACAAGTCGA-G---------------TGGCGCAACGTACTCATCCAGCAAATA
droFic1 scf7180000453776:253575-253799 + TTT---ATTATCCGTTTT-------TCCA-TTTTGTTTTTCCATAT--CAATCAATACACAAAC-------AATCAA----CC-A-------------------------------------------------------------------A---CCACTCCCCGACCAAAAATCAA-AAAC-C----------------G--------------------------AAAC--A-----AAAA----CG--CA--AAAC---------TG-------CACACAACACG----AACACCA-------A---A------------AA-------------------A----AA---------------------------------ATCACCCCC-------------------------------------TGC---------C-CCGCCCA-----------------------------CTGC--CG-------GTT--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGTGCA---TACTCATCCAGCAAATA
droEle1 scf7180000491280:1139258-1139503 + TTT---ATTATTCGTTTT------CTACA-TTTTGTTTTTCCATAT--CAATCAATACACAATCAAAC---AATCAATCAACC-A-------------------------------------------------------------------A---ACACTCCCCGACCAAAAAC-------C-C----------------G--------------------------AAAAA--------ATA----CA--CA--AAAC---------CG-------CACACACCACG----AAC--CCAACGCCCAATCAAAAAAA-AAAAAAA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGC---------C-ACGCCCA-----------------------------CTGC--CG-------GTT--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTATAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATA
droRho1 scf7180000779516:57256-57488 - TTT---ATTATGCGTTTT------CTACA-TTTTATTTTTCCATAT--CAATCAATACACAATCAATA---AATCAATCAACC-A-------------------------------------------------------------------A---CCACTCCCCGACCAAAAATCAA-AAAC-C----------------G--------------------------AAAA----------TA----CA--CT--AAAC---------CG-------CACACACCACG----AACACCC-------A-ATA------------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGC---------C-ACGCCCA-----------------------------CTGC--CG-------GTT--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTATAAGTCGA-G---------------TGGCGCA---TACTCATCTAGCAAATA
droBia1 scf7180000302136:3186044-3186287 - TTT---ATTATGCGTTTT-------TACA-TTTTGTTTTTCCATAT--CAATCGATACACAATC-------AATCAATCAACC-A-------------------------------------------------------------------A---CCACTCCCCGACCAAA-ATCAATAAAC-C----------------G--------------------------AA---TAAA---AAAACACCCA--CA--AAAC---------TG-------CACACACCACG----AACAACCAA--CCCAACCA------------CA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGC---------C-CTGCCCA-----------------------------CTGC--CG-------GTTGTGTGT------TGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATA
droTak1 scf7180000415310:213533-213772 + TTT---ATTATGCGTTTT-------TACA-TTTTGTTTTTCCATAT--CAATCAATACACAATCAATC---AATCAATCAACC-A-------------------------------------------------------------------A---CCACTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------A----TAAAAAAAAAA----CA--CA--AAAC---------TG-------CACACACCACG----AACACCC-------AACCA------------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGC---------C-CTGCCCA-----------------------------CTGC--CG-------GTT--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATA
droEug1 scf7180000409787:616739-616974 - TTT---ATTATGCGTTTT-------TACA-TTTTGTTTTTCCATAT--CAATCAATACACAATC-------AATCAATCAACC-A-------------------------------------------------------------------A---CCACTCCCCGACCAAAAATCAA-AAAC-C----------------G--------------------------A----TA-----AAAA----CA--CA--AAAC---------TG-------CACAAACCACG----AACACCC-------A-ACAAA-----AAACCAA-------------------A----AC---------------------------------ACCAACCAA-------------------------------------TGC---------C-CTGCCCA-----------------------------ATAT--TG-------ATG--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCACA---TACTCATCCAGCAAATA
dm3 chr3R:24958819-24959043 + TTT---ATTATGCGTTT--------TACA-TTTTGTTTTTCCATAT--CAATCAATACACAATCAATC---AATCAATCAACC-A----------------------A--C----------------------CAACCAACCAACCAACCA-A---CACCTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------AAAAA-------------------CC--AAAC---------CG-------CACACAACACG----TACACCC-------A-CCA------------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGA---------C-CC----------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATA
droSim2 3r:24318658-24318866 + dsi_20075 TTT---ATTATGCGTTT--------TACA-TTTTGTTTTTCCATAT--CAATCAATACACAATC-------AATCAACCAAC-------------------------------------------------------AAAC----CAACCA-A---CACCTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------AAAAA-------------------CC--AAAC---------CG-------CACACAACACG----TACACCC-------A-CCA------------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGA---------C-CC----------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TAGCGCA---TACTCATCCAGCAAATA
droSec2 scaffold_4:3823435-3823651 + TTT---ATTATGCGTTT--------TACA-TTTTGTTTTTCCATAT--CAATCAATACACAATC-------AATCAATCAACC-A--------------------------------------------------ACAAAC----CAACCAACCTACACCTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------AAAAA-------------------CC--AAAC---------TG-------CACACAACACG----TACACCC-------A-CCA------------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGA---------C-CC----------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TAGCGCA---TACTCATCCAGCAAATA
droYak3 3R:21539345-21539571 - TTT---ATTATGCGTTT--------TACA-TTTTGTTTTTCCATAT--CAATCAATTCACAATC-------AATCAATCAACC-A-------------------------------------------------------------------A---CACCTCCCCGACCAAAAATCAATAAAC-T----------------G--------------------------CAAAA-------------------CA--AAAC---------CG-------CACACAACACG----TACACCC-------A-CCAAA----------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGA---------C-CTGCCCA-----------------------------CTGC--CG-------GTT--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATA
droEre2 scaffold_4820:3072756-3072983 - TTT---ATTATGCGTTT--------TACG-TTTTGTTTTTCCATAT--CAATCAATTCACAATC-------AATCAATCAACC-A-------------------------------------------------------------------A---CACCTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------CAAAA-------------------CA--AAAC---------CG-------CACACAACACG----TACATCC-------A-CCAAA--------ACAA-------------------A----AC---------------------------------ACCAC-CAA-------------------------------------TGA---------C-CTGCCCA-----------------------------CTGC--CG-------GTT--GTGT------GGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATA
dp5 2:8702591-8702836 + TTT---ATGATTCGTTTT-------TTCG-TTTTGTTTTTCCATAT--CAATCAATATAT--CC-------AATCAATC---C-A-------------------------------------------------------------------A---CCACACCTTGACCAAAAC-----AAAA-A---------------------------------------------------A---AAAACACCCAAACC--AACC---------CA-------CACAAAAA-----------------------------AAC-A------------------------------ACAACACACA----CCACACACATACACACCCCGT-------AC-------------------------------------TGC-CCGT----C-CTGCCCG--------------T---T-CTGCCGCCGCCGCCCCG-------GTT--GTGT------TGTC---AGTCGGTGCCCACGGTGTACCAGTCGA-G---------------TGTCCCC---CGTTCATCAAACAAATA
droPer2 scaffold_0:2516012-2516255 + TTT---ATGATTCGTTTT-------TTCG-TTTTGTTTTTCCATAT--CAATCAATATAT--CC-------AATCAATC---C-A-------------------------------------------------------------------A---CCACACCTTGACCAAAAAAAAAAAAAC-A----------------C--------------------------CCAAA-------------------CC--AACC---------CA-------CACAAAAA-----------------------------AAC-A------------------------------ACAACACACA----CCACACACACACACACCCCGT-------AC-------------------------------------TGC-CCGT----C-CTGCCCG--------------T---T-CTGCCGCCGCCGCCCCG-------GTT--GTGT------TGTC---AGTCGGTGCCCACGGTGTACCAGTCGA-G---------------TGTCCCC---CGTTCATCAAACAAATA
droWil2 scf2_1100000004902:5481601-5481904 + TTT---ATTATGCGTTTTTCTTTATAACT-TTTTATTTTTCCATAT--CAATCAATCA-AAAACAATC---AAACAAT-----------------------------------------------------------A-CC----TACCCA-AT--TACCTACCTGAAAAACAATCAATCAATTT----------------G--------------------------AAAAA----C--------------CA--AAAACACACACAATG-------T--GCACCACC------CACCC-------A-CAA------------AT---------ACACACGAAAAACCGAA---------------------------------ACTGAAACCGAAATACCCGAAAACAAAAACCCAAAAACCGAAAACCCGCCCCAT----C---A------------------TTACT-TTGCGA---CTGT--TG-------ACTATGTGT------TGAT---AGTCGGTACCAACGGTGTATAAGTCCA-A---------------T---GTA---TATTCATCCAACAAATA
droVir3 scaffold_13047:15243165-15243410 - TTT-ATATTATTTGTTTT-------TACG-TTTTATT-TTCCATAT--CAATCAA------ATCA----AT--TCAATATACC-----------------C--AATAC-----------------------------AAAC----GAACCA-A---T---ACCCCGAAC----------------CCTGCAAACGCACAAACCAAACCAAACCA--------------A-AAC--CA---AAACCAAAAC--CAACAACA---------TC-------C--CTCATAAA----CAACAAC------------------------AC-------------------A----AC---------------------------------AAC----AC-------------------------------------CGC---------C-ACG------------------T---TTCT-------CCGC-CCG-------ATT--GTGT------TGCC---AGTCGGTGCCAATGGTTTACAAA--AA-G---------------TC-CACA---CATTCATCAAAACAATA
droMoj3 scaffold_6540:18723070-18723329 - TTT---GTTGTTTATTTT-----ATTACG-TTTTATT-TTCCATATACCAATCAAAACA----------AT--TCAAAATATC-----------------CAAAATAC--A--------------------------AAAC----GAACCA-A------ATACCCGAAC----------------CCTGCAAATGC-----------------------------------------------------A------------------ATGC--AATGC----ACCACCCAAAATA--CCAACACCCCATATATACAACCAACACAAACACCACCACA-CCAC--C----CC---------------------------------AACA-ACAA-------------------------------------------------C-ACG------------------TTA--TTT-------CCGC-CCG-------GTT--GTGT------TGCC---AGTCGGTGCCGATGGTTTACAAATCCACG---------------TC-GACA---TATTCATCAAACAAATA
droGri2 scaffold_14830:4739408-4739681 + TTTTATTTTATTTGTCTT------TTACG-TTTTATTTTTTCATAT-----TCAATTCAAA--------------------CGCAAAACAAAACCCTATGCAAAATACCCAAAAAAAAAAAAAAAAAACAAACAATCAAAC----G------A---ACGAACCCCGAAA---------TAC----CCTGCAAATGC-----------------------------------------------------A--------A---------ATGCACAATCG----ACCAC--AAAATA--C--------------------------------------------------------ACATACCAACAACACACACACA------------------------------------------------------------------C-ATG------------------T---TTAT-------ACGCCCCG-------GTT--GTGT------TGCC---AGTCGGTGCCAACGATTTACAAATCGA-CCACAACAACAACAAATC---------GTTCATCAAACAAATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTT---ATTATGCGTTTT------TTACA-TTTTATT-TTCCATAT--CAATCAATAAA---TCAATC---AATCAATCAATC-A-------------------------------------------------------------------A---C-CCACCCCGACCAAAA-----TAAAA-A----------------C--------------------------AAAAACAAA---AAAA----CA--CTT-GAAA---------TG-------CACGCACCACA----CAAAAAAAA--CACAA-AAA--A--------AA-------------------A----AC---------------------------------AATGAAAAA-------------------------------------TGA-A--TCACCATCCACC------------------ACC----------CTGC-CTG-------GTT--GTGTTGT---GGTTGGAAGTCGGTGCCCACGGTGTACAAGTCAA-G---------------TAGCGCA---TACTCATCCGCCAAATASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-CTG-------GTT--GTGTTGT---GGTTGGAAGTC...................................................................2611.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCGGTGCCCACGGT.......................................................1911.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------------------------TGA-A--TCACCATCCACC------------------ACC----------............................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCAA-G---------------TAGCGCA---TACTCATC.........2411.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-G---------------TAGCGCA---TACTCATCCGCCA....2411.001100000
..............................................................................................................................................................................................................................................................................................ACA----CAAAAAAAA--CACAA-AAA--A--------.........................................................................................................................................................................................................................................................................2111.001010000
................................................................................................................................................................................................................................................................................................A----CAAAAAAAA--CACAA-AAA--A--------A........................................................................................................................................................................................................................................................................2020.501010000
........................................................................................................................................................................................................................................................................................................AAAAAA--CACAA-AAA--A--------AA-------------------A----AC---------------------------------A...........................................................................................................................................................................................................2130.331010000
......................................................................................................................................................................................................................................................................................................AAAAAAAA--CACAA-AAA--A--------AA-------------------....................................................................................................................................................................................................................................................19200.306060000
......................................................................................................................................................................................................................................................................................................AAAAAAAA--CACAA-AAA--A--------AA-------------------A----...............................................................................................................................................................................................................................................20200.255050000
.......................................................................................................................................................................................................................................................................................................AAAAAAA--CACAA-AAA--A--------AA-------------------A----...............................................................................................................................................................................................................................................19200.204040000
..........................................................................................................................................................................................................................................................................................................AAAA--CACAA-AAA--A--------AA-------------------A----AC---------------------------------A...........................................................................................................................................................................................................19130.152020000
.....................................................................................................................................................................................................................................................................................................CAAAAAAAA--CACAA-AAA--A--------A........................................................................................................................................................................................................................................................................1970.141010000
......................................................................................................................................................................................................................................................................................................AAAAAAAA--CACAA-AAA--A--------AA-------------------A----A..............................................................................................................................................................................................................................................21170.122020000
................................................................................................................................................................................................................................................................................................A----CAAAAAAAA--CACAA-AAA--..................................................................................................................................................................................................................................................................................18120.081001000
..........................................................................................................................................................................AAA-----TAAAA-A----------------C--------------------------AAAAACAAA---A............................................................................................................................................................................................................................................................................................................................................................20130.081010000
....................................................................................................................................................................................AAA-A----------------C--------------------------AAAAACAAA---AAAA----C....................................................................................................................................................................................................................................................................................................................................................19200.051010000
.......................................................................................................................................................................................................................................................................................................AAAAAAA--CACAA-AAA--A--------AA-------------------....................................................................................................................................................................................................................................................18200.051010000
.......................................................................................................................................................................................................................................................................................................AAAAAAA--CACAA-AAA--A--------AA-------------------A----A..............................................................................................................................................................................................................................................20200.051010000
........................................................................................................................................................................................................................................................................................................AAAAAA--CACAA-AAA--A--------AA-------------------A----...............................................................................................................................................................................................................................................18200.051010000
droBip1
TTT---ATTATGCGTTTT------TTACA-TTTTATT-TTCCATAT--CAATCAATTTACAATC-------AATCAATCAATC-A-------------------------------------------------------------------A---C-CCACCCCGACCAAAA-----TAAAA-T----------------CAAAAACAAACCAAAATCACAAAAACAAA---AACA---AAAA----CA--CT--AAAC-------AATG-------CACGCACCACA------CAACC-------A-CTA------------AA---------ACA-ACGA--A----AC---------------------------------AATA-CCAA-------------------------------------TGA---------A--TCACCA-----------------------------CTGC-CTG-------GTT--GTGTTGT---GGTTGGAAGTCGGTGCCGACGGTGTACAAGTCAA-G---------------TAGCGCA---TACTCATCCGCCAAATASizeHit CountTotal NormTotal
No Reads
droKik1
TTT---ATTATGCGTTTT-CT---TTACATTTTTGTTTTTCCAT----CAATAAA-------TCAATCGAT--TCAATCAACCCA---------------------------------------------------------------------------ACCCCGACCC----------------CTGACGTTA-------------------------CAACACCAAA---AAAA---AAAACACACA--CTGCAAAA---------TG-------C--ACAACACG----AAAACAC-------A-CAA---------------------------------------C---------------------------------AA--TCTAC-------------------------------------TGC-C--TCTGCCTCTGCCACCTGCCACCTGCTCCTTT--TTT-------TGGT-TTGGTGTGTGTAT-------GTGTGTGGACCAAGTCGGTGCCCACGGTTTACAAGTCGA-G---------------TGGCGCAACGTACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droFic1
TTT---ATTATCCGTTTT-------TCCA-TTTTGTTTTTCCATAT--CAATCAATACACAAAC-------AATCAA----CC-A-------------------------------------------------------------------A---CCACTCCCCGACCAAAAATCAA-AAAC-C----------------G--------------------------AAAC--A-----AAAA----CG--CA--AAAC---------TG-------CACACAACACG----AACACCA-------A---A------------AA-------------------A----AA---------------------------------ATCACCCCC-------------------------------------TGC---------C-CCGCCCA-----------------------------CTGC--CG-------GTT--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGTGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droEle1
TTT---ATTATTCGTTTT------CTACA-TTTTGTTTTTCCATAT--CAATCAATACACAATCAAAC---AATCAATCAACC-A-------------------------------------------------------------------A---ACACTCCCCGACCAAAAAC-------C-C----------------G--------------------------AAAAA--------ATA----CA--CA--AAAC---------CG-------CACACACCACG----AAC--CCAACGCCCAATCAAAAAAA-AAAAAAA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGC---------C-ACGCCCA-----------------------------CTGC--CG-------GTT--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTATAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droRho1
TTT---ATTATGCGTTTT------CTACA-TTTTATTTTTCCATAT--CAATCAATACACAATCAATA---AATCAATCAACC-A-------------------------------------------------------------------A---CCACTCCCCGACCAAAAATCAA-AAAC-C----------------G--------------------------AAAA----------TA----CA--CT--AAAC---------CG-------CACACACCACG----AACACCC-------A-ATA------------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGC---------C-ACGCCCA-----------------------------CTGC--CG-------GTT--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTATAAGTCGA-G---------------TGGCGCA---TACTCATCTAGCAAATASizeHit CountTotal NormTotal
No Reads
droBia1
TTT---ATTATGCGTTTT-------TACA-TTTTGTTTTTCCATAT--CAATCGATACACAATC-------AATCAATCAACC-A-------------------------------------------------------------------A---CCACTCCCCGACCAAA-ATCAATAAAC-C----------------G--------------------------AA---TAAA---AAAACACCCA--CA--AAAC---------TG-------CACACACCACG----AACAACCAA--CCCAACCA------------CA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGC---------C-CTGCCCA-----------------------------CTGC--CG-------GTTGTGTGT------TGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droTak1
TTT---ATTATGCGTTTT-------TACA-TTTTGTTTTTCCATAT--CAATCAATACACAATCAATC---AATCAATCAACC-A-------------------------------------------------------------------A---CCACTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------A----TAAAAAAAAAA----CA--CA--AAAC---------TG-------CACACACCACG----AACACCC-------AACCA------------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGC---------C-CTGCCCA-----------------------------CTGC--CG-------GTT--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droEug1
TTT---ATTATGCGTTTT-------TACA-TTTTGTTTTTCCATAT--CAATCAATACACAATC-------AATCAATCAACC-A-------------------------------------------------------------------A---CCACTCCCCGACCAAAAATCAA-AAAC-C----------------G--------------------------A----TA-----AAAA----CA--CA--AAAC---------TG-------CACAAACCACG----AACACCC-------A-ACAAA-----AAACCAA-------------------A----AC---------------------------------ACCAACCAA-------------------------------------TGC---------C-CTGCCCA-----------------------------ATAT--TG-------ATG--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCACA---TACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
dm3
TTT---ATTATGCGTTT--------TACA-TTTTGTTTTTCCATAT--CAATCAATACACAATCAATC---AATCAATCAACC-A----------------------A--C----------------------CAACCAACCAACCAACCA-A---CACCTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------AAAAA-------------------CC--AAAC---------CG-------CACACAACACG----TACACCC-------A-CCA------------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGA---------C-CC----------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGTCGA-G---------------TGGCGCA---TACTCA...........2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGTACAAGTCGA-G---------------TGGCGC.....................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................TCAATCAACC-A----------------------A--C----------------------CAACCAACCAACCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2921.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACGGTGTACAAGTCGA-G---------------...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGTCGA-G---------------TGGCGCA---TACTCATCCA.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................TCAACC-A----------------------A--C----------------------CAACCAACCAACCAACCA-A---C................................................................................................................................................................................................................................................................................................................................................................................................................................................2921.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................CCAACCAACCA-A---CACCTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGGTGTACAAGTCGA-G---------------TGGCG......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTCGA-G---------------TGGCGCA---TACTCA...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGA-G---------------TGGCGCA---TACTCATC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAAGTCGA-G---------------TGGCGCA---T................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGTACAAGTCGA-G---------------TGGC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTGTACAAGTCGA-G---------------TGGCGCA---.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCACGGTGTACAAGTCG.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAAGTCGA-G---------------TGGCGC.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGA-G---------------TGGCGCA---TACTCATCCAGCA....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TACA-TTTTGTTTTTCCATAT--C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CCGACCAAAAATCAATAAAC-C----------------G--------------------------.........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CCTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------AA.......................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACAAGTCGA-G---------------TGGCGC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTGTACAAGTCGA-G---------------TGGCGC.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACAAGTCGA-G---------------TGGCG......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGA-G---------------TGGCGCA---TACTCAT..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTT---ATTATGCGTTT--------TACA-TTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................CCA-A---CACCTCCCCGACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................ATCAACC-A----------------------A--C----------------------CAACCAACCAACCAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AATCAATCAACC-A----------------------A--C----------------------CAACCAACCAACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AATCAATCAACC-A----------------------A--C----------------------CAACCAACCAACCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................3020.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AATCAACC-A----------------------A--C----------------------CAACCAACCAACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TCAACC-A----------------------A--C----------------------CAACCAACCAACCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CC-A----------------------A--C----------------------CAACCAACCAACCAACCA-A---CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................C----------------------CAACCAACCAACCAACCA-A---CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ACC-A----------------------A--C----------------------CAACCAACCAACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................A--C----------------------CAACCAACCAACCAACCA-A---C................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ACC-A----------------------A--C----------------------CAACCAACCAACCAACCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................C-A----------------------A--C----------------------CAACCAACCAACCAACCA-A---C................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ACC-A----------------------A--C----------------------CAACCAACCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CC-A----------------------A--C----------------------CAACCAACCAACCAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................C----------------------CAACCAACCAACCAACCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................C----------------------CAACCAACCAACCAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................A----------------------A--C----------------------CAACCAACCAACCAACCA-A---.................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ACC-A----------------------A--C----------------------CAACCAACCAACCAACCA-A---C................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ACC-A----------------------A--C----------------------CAACCAACCAACCAACCA-A---.................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................AACC-A----------------------A--C----------------------CAACCAACCAACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................CAACC-A----------------------A--C----------------------CAACCAACCAACCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................A--C----------------------CAACCAACCAACCAACCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................CAACC-A----------------------A--C----------------------CAACCAACCAACCAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTT---ATTATGCGTTT--------TACA-TTTTGTTTTTCCATAT--CAATCAATACACAATC-------AATCAACCAAC-------------------------------------------------------AAAC----CAACCA-A---CACCTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------AAAAA-------------------CC--AAAC---------CG-------CACACAACACG----TACACCC-------A-CCA------------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGA---------C-CC----------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TAGCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TTT---ATTATGCGTTT--------TACA-TTTTGTTTTTCCATAT--CAATCAATACACAATC-------AATCAATCAACC-A--------------------------------------------------ACAAAC----CAACCAACCTACACCTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------AAAAA-------------------CC--AAAC---------TG-------CACACAACACG----TACACCC-------A-CCA------------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGA---------C-CC----------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TAGCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTT---ATTATGCGTTT--------TACA-TTTTGTTTTTCCATAT--CAATCAATTCACAATC-------AATCAATCAACC-A-------------------------------------------------------------------A---CACCTCCCCGACCAAAAATCAATAAAC-T----------------G--------------------------CAAAA-------------------CA--AAAC---------CG-------CACACAACACG----TACACCC-------A-CCAAA----------AA-------------------A----AC---------------------------------ACCACCCAA-------------------------------------TGA---------C-CTGCCCA-----------------------------CTGC--CG-------GTT--GTGT------TGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGA-G---------------TGGCGCA---TACTCATC.........2111.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACAAGTCGA-G---------------TGGCGCA---TA...............2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTGCCCACGGTGTACAAGTCGA-...........................................2611.00101000000000
droEre2
TTT---ATTATGCGTTT--------TACG-TTTTGTTTTTCCATAT--CAATCAATTCACAATC-------AATCAATCAACC-A-------------------------------------------------------------------A---CACCTCCCCGACCAAAAATCAATAAAC-C----------------G--------------------------CAAAA-------------------CA--AAAC---------CG-------CACACAACACG----TACATCC-------A-CCAAA--------ACAA-------------------A----AC---------------------------------ACCAC-CAA-------------------------------------TGA---------C-CTGCCCA-----------------------------CTGC--CG-------GTT--GTGT------GGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-G---------------TGGCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTCGA-G---------------TGGCGC.....................1812.0020100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACAAGTCGA-G---------------TGG........................1811.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------GTT--GTGT------GGCCAAAAGTCGGT................................................................2211.0010001000
dp5
TTT---ATGATTCGTTTT-------TTCG-TTTTGTTTTTCCATAT--CAATCAATATAT--CC-------AATCAATC---C-A-------------------------------------------------------------------A---CCACACCTTGACCAAAAC-----AAAA-A---------------------------------------------------A---AAAACACCCAAACC--AACC---------CA-------CACAAAAA-----------------------------AAC-A------------------------------ACAACACACA----CCACACACATACACACCCCGT-------AC-------------------------------------TGC-CCGT----C-CTGCCCG--------------T---T-CTGCCGCCGCCGCCCCG-------GTT--GTGT------TGTC---AGTCGGTGCCCACGGTGTACCAGTCGA-G---------------TGTCCCC---CGTTCATCAAACAAATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACCAGTCGA-G---------------TGTC.......................1911.0010000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGA-G---------------TGTCCCC---CGTTCATC.........2111.0010100000000
droPer2
TTT---ATGATTCGTTTT-------TTCG-TTTTGTTTTTCCATAT--CAATCAATATAT--CC-------AATCAATC---C-A-------------------------------------------------------------------A---CCACACCTTGACCAAAAAAAAAAAAAC-A----------------C--------------------------CCAAA-------------------CC--AACC---------CA-------CACAAAAA-----------------------------AAC-A------------------------------ACAACACACA----CCACACACACACACACCCCGT-------AC-------------------------------------TGC-CCGT----C-CTGCCCG--------------T---T-CTGCCGCCGCCGCCCCG-------GTT--GTGT------TGTC---AGTCGGTGCCCACGGTGTACCAGTCGA-G---------------TGTCCCC---CGTTCATCAAACAAATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTCGA-G---------------TGTCCCC---CGTT.............2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACCAGTCGA-G---------------TGTCCCC---C................2311.001000001
...........................................................................................................................................................................AAAAAAAAAAAC-A----------------C--------------------------CCAAC-------------------.................................................................................................................................................................................................................................................................................................................................................19200.051000100
droWil2
TTT---ATTATGCGTTTTTCTTTATAACT-TTTTATTTTTCCATAT--CAATCAATCA-AAAACAATC---AAACAAT-----------------------------------------------------------A-CC----TACCCA-AT--TACCTACCTGAAAAACAATCAATCAATTT----------------G--------------------------AAAAA----C--------------CA--AAAACACACACAATG-------T--GCACCACC------CACCC-------A-CAA------------AT---------ACACACGAAAAACCGAA---------------------------------ACTGAAACCGAAATACCCGAAAACAAAAACCCAAAAACCGAAAACCCGCCCCAT----C---A------------------TTACT-TTGCGA---CTGT--TG-------ACTATGTGT------TGAT---AGTCGGTACCAACGGTGTATAAGTCCA-A---------------T---GTA---TATTCATCCAACAAATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT------TGAT---AGTCGGTACCAACG.........................................................2111.00110000
droVir3
TTT-ATATTATTTGTTTT-------TACG-TTTTATT-TTCCATAT--CAATCAA------ATCA----AT--TCAATATACC-----------------C--AATAC-----------------------------AAAC----GAACCA-A---T---ACCCCGAAC----------------CCTGCAAACGCACAAACCAAACCAAACCA--------------A-AAC--CA---AAACCAAAAC--CAACAACA---------TC-------C--CTCATAAA----CAACAAC------------------------AC-------------------A----AC---------------------------------AAC----AC-------------------------------------CGC---------C-ACG------------------T---TTCT-------CCGC-CCG-------ATT--GTGT------TGCC---AGTCGGTGCCAATGGTTTACAAA--AA-G---------------TC-CACA---CATTCATCAAAACAATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TTT---GTTGTTTATTTT-----ATTACG-TTTTATT-TTCCATATACCAATCAAAACA----------AT--TCAAAATATC-----------------CAAAATAC--A--------------------------AAAC----GAACCA-A------ATACCCGAAC----------------CCTGCAAATGC-----------------------------------------------------A------------------ATGC--AATGC----ACCACCCAAAATA--CCAACACCCCATATATACAACCAACACAAACACCACCACA-CCAC--C----CC---------------------------------AACA-ACAA-------------------------------------------------C-ACG------------------TTA--TTT-------CCGC-CCG-------GTT--GTGT------TGCC---AGTCGGTGCCGATGGTTTACAAATCCACG---------------TC-GACA---TATTCATCAAACAAATASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTTATTTTATTTGTCTT------TTACG-TTTTATTTTTTCATAT-----TCAATTCAAA--------------------CGCAAAACAAAACCCTATGCAAAATACCCAAAAAAAAAAAAAAAAAACAAACAATCAAAC----G------A---ACGAACCCCGAAA---------TAC----CCTGCAAATGC-----------------------------------------------------A--------A---------ATGCACAATCG----ACCAC--AAAATA--C--------------------------------------------------------ACATACCAACAACACACACACA------------------------------------------------------------------C-ATG------------------T---TTAT-------ACGCCCCG-------GTT--GTGT------TGCC---AGTCGGTGCCAACGATTTACAAATCGA-CCACAACAACAACAAATC---------GTTCATCAAACAAATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:22 PM