dan_42

Name	Class	Family	Strand
Hoana1	DNA	hAT-hobo	+
Helitron-2_DVir	RC	Helitron	-

TCGAAGTTAGCCTTCCTTTCTTGTTTTTATACCCTTGCCCCTATTATATTTTTGGTCAAAAGTGTGCAACGCAGTATAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATTACCTTTTAAGTCGATATAAGCATGTCCGTCTGTCTTTCTGTCCGTCTGT *********************************...........((.((((((((((.((((((....((..((((((.............))))))..))...)))))).)))))))))).)).............*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V105 male body	V106 head	M044 female body	M058 embryo	V039 embryo
......................................................................................................................CAGGATTACCTTTTAAGTCGA...................................	21	0	1	1.00	1	1	0	0	0	0
..............................................................TGTGCAACGCAGTATAGGAGA...........................................................................................	21	0	4	0.75	3	0	3	0	0	0
................................................................TGCAACGCAGTATAGGAGACA.........................................................................................	21	0	4	0.50	2	2	0	0	0	0
................................................................................................................................................GCATGTCCGTCTGTCTTTCTGTCCGC....	26	1	4	0.25	1	0	0	0	1	0
..................................................................................................................................................ATGTCCGTCTGTCTTTCTGT........	20	0	6	0.17	1	0	0	1	0	0
.................................................................................................................................................CATGTCCGTCTGTCTTTCTGT........	21	0	6	0.17	1	0	0	1	0	0
.........................................................................................................................................GATATAAGCATGTCCGTCTGTCTTT............	25	0	10	0.10	1	0	0	1	0	0
.......................................................................................................................................TCGATATAAGCATGTCCGTCTGTCTT.............	26	0	11	0.09	1	0	0	1	0	0
..........................................................................................................................ATTACCTTTTGCGTCGAT..................................	18	2	13	0.08	1	0	0	0	0	1

AGCTTCAATCGGAAGGAAAGAACAAAAATATGGGAACGGGGATAATATAAAAACCAGTTTTCACACGTTGCGTCATATCCTCTGTAGAGGCTGGGATATTTCATATATATAAGAACTAGTCCTAATGGAAAATTCAGCTATATTCGTACAGGCAGACAGAAAGACAGGCAGACA *********************************...........((.((((((((((.((((((....((..((((((.............))))))..))...)))))).)))))))))).)).............*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V105 male body	V039 embryo	V055 head
.....CAATCGGAAGGAAAGAACAAA....................................................................................................................................................	21	0	7	0.14	1	0	0	1	0	0
............................................................................ATCCTCTGTAGAGGCTGGGATATT..........................................................................	24	0	8	0.13	1	1	0	0	0	0
.......ATCGGAAGGAAAGAACAAA....................................................................................................................................................	19	0	9	0.11	1	0	1	0	0	0
...........GAAGGAGAGAACAAAAAT.................................................................................................................................................	18	1	13	0.08	1	0	0	0	1	0
..........GGAAGGAAAGAAAGAAAATATA..............................................................................................................................................	22	3	20	0.05	1	0	0	1	0	0
......................................................................................................................................CAGCTATATTCGTACAGGCAGA..................	22	0	20	0.05	1	1	0	0	0	0
......................................................................................GAGGCTGGGATATTTCATATATA.................................................................	23	0	20	0.05	1	0	0	0	1	0
............................TCTGCGAACGGGGATAGTA...............................................................................................................................	19	3	20	0.05	1	0	0	0	1	0
....TCAATCGGGAGGAAAGAACA......................................................................................................................................................	20	1	20	0.05	1	1	0	0	0	0
..................................................................................TGTAGAGGCTGGGATATTTCAT......................................................................	22	0	20	0.05	1	1	0	0	0	0
......................CAAAAAGATGGAAACGGG......................................................................................................................................	18	2	20	0.05	1	0	1	0	0	0
....................................................................................................................................................CAGACAGACAGAAAGACAGGC.....	21	1	20	0.05	1	1	0	0	0	0
.....................................................CCAGTTTTCACACGTTGCGTCAT..................................................................................................	23	0	20	0.05	1	0	1	0	0	0
..................................................AAACCAGTTTTCACACGTTGCGTCAT..................................................................................................	26	0	20	0.05	1	1	0	0	0	0
................................GGAACGAGGATAATATGTA...........................................................................................................................	19	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droAna3	scaffold_13258:692081-692254 -	dan_42	TCGAAGTTAG-CCTT--CCT-TTCTTGTT--T-TTATACCC-------TTGCC---------C--CTATTATATTTTTGGTCAA-----AAGTGTGCAACGCAGTATAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATTACCTTTTAAGTCGATATAAGCATGTCCGTCTGTCT----TTCTGTCCGTCTGT
droBip1	scf7180000396238:4462-4638 +		CCGAAGTTAG-CTTT--CCT-TTCTTGTT--T-TTATACCC-------TTGCAG------AGG--GTATTATAATTTTGGTCAA-----AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCC----GTCTGTCCGTCTGT
droKik1	scf7180000302690:13409-13584 +		CCGAAGTTAG-CTTC---CT-TTCTTGTTTTA-TTATACCC-------TTGCA--------GG--GTATTATAATTTCAGTCAG-----AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCC----GTCTGTCCGTCTGT
droFic1	scf7180000453831:386921-387103 +		CCGAAGCTAG-CTTC---CT-TTCTTGTT--TTTTATACCC-------TTGCAGAGCAAAAGG--GTATTATAATTTCAGTCAG-----AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGAGCAGAGTCGGAATACGTCTGTCCGTCTGTCT----GTCTGTCCGTCTGT
droEle1	scf7180000487562:343-522 -		CCGAAGTTTG-CTTC---CT-TTCTTGTT--T-TTATACCC-------TTGCAG------AGG--GTATTATAATTTCAGTCAG-----AAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCTGT
droRho1	scf7180000776189:8802-8978 +		C-GAAGTTTG-CTTC---CT-TTCTTGTTTTT-TTATACCC-------TTGCAG------AGG--GTATTATAATTTTGGTCAA-----AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTCC----GTCTGTCCGTCTGT
droBia1	scf7180000301733:12523-12697 -		TCAAGGTTAT--TG----TC-TTATAGTT--TATTATACCC-------TTGCAG------AGG--GTATAATGATTTCAGTCAG-----AAGTTTGCAACGCAGTGAAGGAGACATTTCCGACCGCATAAAGTATATATATTCTTGATCAGCATCACATGACGAGTAGATATAGCCATGTCCGTCTGTCC----GTCTGTCTGTCTGT
droTak1	scf7180000414154:16209-16384 -		CCGAAGTTAA-CTTC---CT-TTCTTGTC--T-TTATACCC-------TTGCAG------AGG--GTATTATGATTTCAGTCAG-----AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCACAAGACGTGTCGATCTAGCCATGTCCGCCTGTCC----TTCTGTCCGTCTGT
droEug1	scf7180000408809:12074-12225 -		TT-----------------------------A-TTATACCC-------TTGCAG------AGG--GTATTATAGTTTTGGTCAG-----AAGCTTGTAACGCAGTGAAGGAGACGTTTCCGACCCCATAACGTAT--ATATTCTTGATCAGGATCAATAAGGGAGTTGATATAGCCATGTCCGTCTGTCC----GTCTGTCCGTCTGT
dm3	chr3RHet:300201-300368 -		TCAGCCTT-C-TAGC---CT-TTATAGTT--C-CTGAGATC-------TT-----------GG--GTATAATATATTCTTTGAA-----AAGTATGTAACTGGCAGAAGGAAGCGTTTAAGACC--ATAACGTATATATATTCTTGATCATGATCAATAGCAGAGTCGATCCGGCCATTTCCGTCTCTCC----GTATGAACGTCGAT
droSim2	3l:23177978-23178164 +		TTTAGGACAG-CTTT---TT-TATCTTTA--A-TTGTACCCGTAACTC--GTGGAGTAAATGG--GTATACTAGATTAGTTGAA-----AGGGGTGTAACAGGCAGAAGGAAGGGTTTCCGACTATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCC----GTATTTCCGTCTGT
droSec2	scaffold_11:1771585-1771761 -		TTACAGTTAA-CCTG---AAGAACTAATT--T-GTATACCCGTTGCTC--GTA--------GG--ATAAAAGGGTATTG--GAA-----CAGTATGGAATTGAAAGAAGGTAGCCTTTCCGACTATATAAAGTATATATATTCTTGAGCATGATTGCTC-TCAAGTAGATCTGGTCATGTACACTCATCC----GACTGTCCGTATAA
droYak3	3R:285117-285304 +		TCGACTATAG-CGTT---CT-CTCTTGTT-TA-TTATACCCGTTACTC--GTAGAGTAAAAGG--GTATACTAGATTCGTTGAA-----AAGTATGTAACAGGCAAAAGGAAGCGTTTTCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGTCAAGTCGATCTGGCCATGTCCGTCTGTCC----GTCCGTCTGTCTGT
droEre2	scaffold_4929:21446462-21446621 +		TCGACTTTAG-TGTT---CT-TTCTCGTT--T-TTATACCCGTTACTC--GTAGAGAACTTCT----------------------------------TTCTACGAGAAGGAAGTGGTACCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGAACTGGCCAGGTCCGTCTGTCT----GTCCGTCCGTCTGT
dp5	2:25146337-25146499 +		TTCC---------------C-CAACTCTT--T-TTATACCCGATACTC--A--------------AAATTAGT-ATTTAGTGTA-----ACTAGTGTAACGTCCAATAGAAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATGGAGCCATGTCTGTCTGTCT----GTCCGTCCGTCCGT
droPer2	scaffold_4971:579-757 -		GTGTGGTTGC-CCGTTTTTT-TTCCCCTT--T-TTATATTG--------------------GGGTATATTAGATTTGTGGTGAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCT----GTCTGTCCGTCCGT
droWil2	scf2_1100000004514:2143345-2143515 +		TTTA-----C-CATC---TT-TTTTTGTT--T-TTATACCC-------TTGCAG------AGG--GTATTATAAAATTGGTCAG-----ATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATGAGAAGCTAAGTCGATATAGCCATGTCCGTCTGTCC----GTCTGACCGTCTGT
droVir3	scaffold_6432:1095-1271 +		CGA-AGACAGCCCTT---CA-TTCTCGTT--TTTAATAACC-------TTGCAG------AGG--GTATTATAATTTTGTCGTG-----AAATGTGTAACGCATAGAAGGAGACATCTCCGACCCCATAAAGTATATATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCC----GTCTGTCCGTCTGT
droMoj3	scaffold_6500:32108889-32109049 -		TCGACTGGAG-CCTT---CT-TACTTGTT--T-TTA------------------------------TATAATGGTTTTGTTGAA-----ATGTATGTAACAGGCAGAATGAGGCGTGGCAGACCCCACAAAGTATACATATTCTTGATCAAGGTGACGAGCTGAGTCGATTTGGCCCTGTCCGTCTGTCT----GTCCGTCCATCCGT
droGri2	scaffold_15110:24149963-24150133 -		AAA---TTCC-CTTT--TAT-TGCTTCATTAA-AAATATCT-------GTGCT-------------TAATTTATGATTTATATG-----AAATAGGCAACGCATTGAAGGAGACCTCTCCGACCCCATAAAGTATTTAGATTCTTGATCAGCTTCACTACCTGAGTCGATATAGCCTTTTGCGTCTGTGT----ATCTGTCTGAATAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TCGAAGTTAG-CCTT--CCT-TTCTTGTT--T-TTATACCC-------TTGCC---------C--CTATTATATTTTTGGTCAA-----AAGTGTGCAACGCAGTATAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATTACCTTTTAAGTCGATATAAGCATGTCCGTCTGTCT----TTCTGTCCGTCTGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................CAGGATTACCTTTTAAGTCGA.......................................	21	1	1.00	1	0	0	0	0	1	0
............................................................................................TGTGCAACGCAGTATAGGAGA...............................................................................................	21	4	0.75	3	0	0	0	0	0	3
..............................................................................................TGCAACGCAGTATAGGAGACA.............................................................................................	21	4	0.50	2	0	0	0	0	2	0
..............................................................................................................................................................................GCATGTCCGTCTGTCT----TTCTGTCCGC....	26	4	0.25	1	0	1	0	0	0	0
................................................................................................................................................................................ATGTCCGTCTGTCT----TTCTGT........	20	6	0.17	1	1	0	0	0	0	0
...............................................................................................................................................................................CATGTCCGTCTGTCT----TTCTGT........	21	6	0.17	1	1	0	0	0	0	0
.......................................................................................................................................................................GATATAAGCATGTCCGTCTGTCT----TT............	25	10	0.10	1	1	0	0	0	0	0
.....................................................................................................................................................................TCGATATAAGCATGTCCGTCTGTCT----T.............	26	11	0.09	1	1	0	0	0	0	0

droBip1

CCGAAGTTAG-CTTT--CCT-TTCTTGTT--T-TTATACCC-------TTGCAG------AGG--GTATTATAATTTTGGTCAA-----AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCC----GTCTGTCCGTCTGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCGAAGTTAG-CTTC---CT-TTCTTGTTTTA-TTATACCC-------TTGCA--------GG--GTATTATAATTTCAGTCAG-----AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCC----GTCTGTCCGTCTGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCGAAGCTAG-CTTC---CT-TTCTTGTT--TTTTATACCC-------TTGCAGAGCAAAAGG--GTATTATAATTTCAGTCAG-----AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGCATCACGAGCAGAGTCGGAATACGTCTGTCCGTCTGTCT----GTCTGTCCGTCTGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCGAAGTTTG-CTTC---CT-TTCTTGTT--T-TTATACCC-------TTGCAG------AGG--GTATTATAATTTCAGTCAG-----AAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCTGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C-GAAGTTTG-CTTC---CT-TTCTTGTTTTT-TTATACCC-------TTGCAG------AGG--GTATTATAATTTTGGTCAA-----AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTCC----GTCTGTCCGTCTGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCAAGGTTAT--TG----TC-TTATAGTT--TATTATACCC-------TTGCAG------AGG--GTATAATGATTTCAGTCAG-----AAGTTTGCAACGCAGTGAAGGAGACATTTCCGACCGCATAAAGTATATATATTCTTGATCAGCATCACATGACGAGTAGATATAGCCATGTCCGTCTGTCC----GTCTGTCTGTCTGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCGAAGTTAA-CTTC---CT-TTCTTGTC--T-TTATACCC-------TTGCAG------AGG--GTATTATGATTTCAGTCAG-----AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCACAAGACGTGTCGATCTAGCCATGTCCGCCTGTCC----TTCTGTCCGTCTGT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TT-----------------------------A-TTATACCC-------TTGCAG------AGG--GTATTATAGTTTTGGTCAG-----AAGCTTGTAACGCAGTGAAGGAGACGTTTCCGACCCCATAACGTAT--ATATTCTTGATCAGGATCAATAAGGGAGTTGATATAGCCATGTCCGTCTGTCC----GTCTGTCCGTCTGT	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCAGCCTT-C-TAGC---CT-TTATAGTT--C-CTGAGATC-------TT-----------GG--GTATAATATATTCTTTGAA-----AAGTATGTAACTGGCAGAAGGAAGCGTTTAAGACC--ATAACGTATATATATTCTTGATCATGATCAATAGCAGAGTCGATCCGGCCATTTCCGTCTCTCC----GTATGAACGTCGAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................CT-TTATAGTT--C-CTGAGATC-------TT-----------GG--G..............................................................................................................................................	24	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	4	0	1	1	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CT-TTATAGTT--C-CTGAGATC-------TT-----------GG--GT.............................................................................................................................................	25	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................TTGATCATGATCAATAGCAGAGTCGA.......................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATGATCAATAGCAGAGTCGATCCGGC.................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CT-TTATAGTT--C-CTGAGATC-------TT-----------G..................................................................................................................................................	22	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GAAGGAAGCGTTTAAGACC--ATAACG............................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
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.........................................................................................................................................................................................TCTCC----GTATGAACGTCGA.	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................ATCAATAGCAGAGTCGATC.....................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TCTCTCC----GTATGAACGTCG..	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................GTCTCTCC----GTATGAACGTC...	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CT-TTATAGTT--C-CTGAGATC-------................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................T-TTATAGTT--C-CTGAGATC-------TT-----------G..................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTTAGGACAG-CTTT---TT-TATCTTTA--A-TTGTACCCGTAACTC--GTGGAGTAAATGG--GTATACTAGATTAGTTGAA-----AGGGGTGTAACAGGCAGAAGGAAGGGTTTCCGACTATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCC----GTATTTCCGTCTGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCT......................	25	20	5.30	106	0	0	4	3	0	0	0	2	0	0	97	0	0	0	0	0	0
............................................................................................GGTGTAACAGGCAGAAGGAAGGGT............................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
................................................................................TGAA-----AGGGGTGTAACAGGCAGAAGGA.................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................TATATATTCTTGATCAGGATCAATAGC...............................................	27	20	1.80	36	0	0	0	0	0	0	0	2	0	0	34	0	0	0	0	0	0
.....................................................................................................GGCAGAAGGAAGGGT............................................................................................	15	9	1.56	14	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0
.............................................................................................................................................TCTTGATCAGGATCAATAGCCGAGT..........................................	25	20	1.55	31	0	0	0	0	0	0	0	0	21	0	10	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATG.............................	25	20	1.25	25	0	0	2	2	0	0	0	0	0	0	17	1	3	0	0	0	0
....................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTA...................................	25	20	1.25	25	0	0	0	0	0	0	0	18	7	0	0	0	0	0	0	0	0
.................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCTG.....................	26	20	1.15	23	0	0	1	5	0	0	0	0	0	0	17	0	0	0	0	0	0
.................................................................................................................................AAGTATATATATTCTTGATCAGGA.......................................................	24	20	1.05	21	0	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0
.......................................................................TAGATTAGTTGAA-----AGGGGTGTAA.............................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................TTAGTTGAA-----AGGGGTGTAAC............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................TAGTTGAA-----AGGGGTGTAACAGGCAGA.....................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................TGGAGTAAATGG--GTATACTAGATTAGT................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................GG--GTATACTAGATTAGTTGAA-----AGGGG..................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................AGTTGAA-----AGGGGTGTAACAGGCAGA.....................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................TGGAGTAAATGG--GTA............................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................ACAGGCAGAAGGAAGGGT............................................................................................	18	9	0.89	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
............................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGT..........................................	26	20	0.80	16	0	1	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0
...................................................................................................................................GTATATATATTCTTGATCAGGATCAATA.................................................	28	20	0.80	16	0	0	0	0	0	0	0	0	0	4	12	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTC...........................	24	20	0.80	16	0	0	0	0	0	0	3	0	0	3	10	0	0	0	0	0	0
...................................................................................................................................GTATATATATTCTTGATCAGGAT......................................................	23	20	0.80	16	0	0	8	0	0	0	0	0	0	0	8	0	0	0	0	0	0
.................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGT........................	23	20	0.70	14	0	0	1	0	0	0	0	0	0	0	13	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCG.........................	26	20	0.65	13	0	0	0	0	0	0	1	0	8	0	4	0	0	0	0	0	0
.........................................................................................................................................................................TCTAGCCATGTCCGTCTGTCC----GTA...........	24	20	0.65	13	0	0	1	0	0	0	4	3	1	2	2	0	0	0	0	0	0
...............................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTC.......................	26	20	0.65	13	0	0	0	0	0	0	0	0	1	0	11	1	0	0	0	0	0
........................................................................................................AGAAGGAAGGGTTTCCGACT....................................................................................	20	8	0.63	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGATCTAGCCA...............................	23	20	0.60	12	0	0	0	0	0	0	0	0	4	3	0	0	5	0	0	0	0
.....................................................................................................GGCAGAAGGAAGGGTT...........................................................................................	16	9	0.56	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGATCTAGCCAT..............................	24	20	0.55	11	0	0	1	0	0	0	0	0	0	0	0	0	9	1	0	0	0
...............................................................................................................................TAAAGTATATATATTCTTGATCAGGA.......................................................	26	20	0.50	10	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGATCTAGCC................................	22	20	0.50	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGT............................	26	20	0.45	9	0	0	0	0	0	0	0	0	0	0	7	0	2	0	0	0	0
..............................................................................................TGTAACAGGCAGAAGGAAGGGTTT..........................................................................................	24	9	0.44	4	0	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	0
..............................................................................................TGTAACAGGCAGAAGGAAGGGTTTC.........................................................................................	25	9	0.44	4	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0
................................................................................................TAACAGGCAGAAGGAAGGGT............................................................................................	20	9	0.44	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
....................................................................................................AGGCAGAAGGAAGGGT............................................................................................	16	9	0.44	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................GCAGAAGGAAGGGTTT..........................................................................................	16	10	0.40	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...............................................................................................................................................................GCCGAGTCGATCTAGCCATGTC...........................	22	20	0.40	8	0	0	0	0	0	0	0	6	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................AGCCGAGTCGATCTAGCCATGTCCGTC.......................	27	20	0.40	8	0	0	0	1	0	0	1	1	0	0	5	0	0	0	0	0	0
.......................................................................................................................................................................GATCTAGCCATGTCCGTCTGTCC----GTA...........	26	20	0.35	7	0	0	0	0	0	0	2	2	1	2	0	0	0	0	0	0	0
.....................................................................................................GGCAGAAGGAAGGGTTT..........................................................................................	17	9	0.33	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............................................................................................TGTAACAGGCAGAAGGAAGGGTT...........................................................................................	23	9	0.33	3	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0
................................................................................................TAACAGGCAGAAGGAAGGG.............................................................................................	19	9	0.33	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................................................................................GGCAGAAGGAAGGGTTTC.........................................................................................	18	9	0.33	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...................................................................................................CAGGCAGAAGGAAGGGT............................................................................................	17	9	0.33	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................................................................................................................................GCCGAGTCGATCTAGCCAT..............................	19	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGTC...........................	27	20	0.30	6	0	0	0	5	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................AAGTATATATATTCTTGATCAGGAT......................................................	25	20	0.30	6	0	0	1	0	0	0	0	0	5	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAGCCATGTCCGTCTGTCC----GTA...........	22	20	0.30	6	0	0	0	0	0	0	1	2	1	0	2	0	0	0	0	0	0
.................................................................................................................................................................CGAGTCGATCTAGCCATGTCC..........................	21	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
....................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGTC...................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
...............................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGT........................	25	20	0.30	6	0	0	0	0	0	0	0	2	0	0	3	0	1	0	0	0	0
.....................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTCC----G.............	26	20	0.25	5	0	0	2	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..................................................................................................................................................................GAGTCGATCTAGCCATGTC...........................	19	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCGT........................	27	20	0.25	5	0	0	2	0	0	0	0	0	1	0	2	0	0	0	0	0	0
...........................................................................................................................................................AATAGCCGAGTCGATCTAGCCATGTC...........................	26	20	0.25	5	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0
.................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTC.......................	24	20	0.25	5	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GAGTCGATCTAGCCATGTCCGTCT......................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
....................................................................................................................................................CAGGATCAATAGCCGAGTCGATCT....................................	24	20	0.25	5	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCCGTC.......................	28	20	0.25	5	0	0	0	0	0	0	1	2	1	0	1	0	0	0	0	0	0
..............................................................................................TGTAACAGGCAGAAGGAAGGGTTTCCGAC.....................................................................................	29	8	0.25	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
................................................................................................TAACAGGCAGAAGGAAGGGTTTC.........................................................................................	23	9	0.22	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
..................................................................................................ACAGGCAGAAGGAAGGG.............................................................................................	17	9	0.22	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................AGGCAGAAGGAAGGGTT...........................................................................................	17	9	0.22	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................AGGCAGAAGGAAGGGTTTC.........................................................................................	19	9	0.22	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................TAACAGGCAGAAGGAAGGGTT...........................................................................................	21	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..................................................................................................ACAGGCAGAAGGAAGGGTT...........................................................................................	19	9	0.22	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................TCAATAGCCGAGTCGATCTAGCCA...............................	24	20	0.20	4	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0
....................................................................................................................................................CAGGATCAATAGCCGAGTCGATC.....................................	23	20	0.20	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................TCTTGATCAGGATCAATAGCCGAG...........................................	24	20	0.20	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................ATATATATTCTTGATCAGGATCAATAGC...............................................	28	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................................................................................................GTATATATATTCTTGATCAGGATC.....................................................	24	20	0.20	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATCTAGCCATG.............................	22	20	0.20	4	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TATTCTTGATCAGGATCAATAGCCGAG...........................................	27	20	0.20	4	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TCAGGATCAATAGCCGAGTCGATCTA...................................	26	20	0.20	4	0	0	0	0	0	0	0	0	1	2	0	0	1	0	0	0	0
.....................................................................................................................................ATATATATTCTTGATCAGGAT......................................................	21	20	0.20	4	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0
..................................................................................................................................................ATCAGGATCAATAGCCGAGTCGAT......................................	24	20	0.15	3	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................TCAATAGCCGAGTCGATCTAGCCATG.............................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGTC.........................................	27	20	0.15	3	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................TAAAGTATATATATTCTTGATCAGG........................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................AGCCGAGTCGATCTAGCCATGTCCGT........................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0
...............................................................................................................................................................GCCGAGTCGATCTAGCCATGT............................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGATCTAGC.................................	21	20	0.15	3	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................CGAGTCGATCTAGCCATGTC...........................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGATCTA...................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.................................................................................................................................................GATCAGGATCAATAGC...............................................	16	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................AGGCAGAAGGAAGGGTTTCCGACTA...................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................TAACAGGCAGAAGGAAGGGTTTCCGA......................................................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................TAACAGGCAGAAGGAAGGGTTTCCGAC.....................................................................................	27	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................AACAGGCAGAAGGAAGGGTTTCCGA......................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................GCAGAAGGAAGGGTTTCCGACTAT..................................................................................	24	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................TGTAACAGGCAGAAGGAAGGGTTTCA........................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................AGGCAGAAGGAAGGG.............................................................................................	15	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................AGGCAGAAGGAAGGGTTT..........................................................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................CAGGCAGAAGGAAGGGTTT..........................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................GTAACAGGCAGAAGGAAGGG.............................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................TAACAGGCAGAAGGAAGG..............................................................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................AACAGGCAGAAGGAAGGGT............................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................TGTAACAGGCAGAAGGAAGGGT............................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................GTAACAGGCAGAAGGAAGGGT............................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................ACAGGCAGAAGGAAGG..............................................................................................	16	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................GCAGAAGGAAGGGTTTC.........................................................................................	17	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................TGTAACAGGCAGAAGGAAG...............................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................TCAATAGCCGAGTCGATCTAGCCAT..............................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CTAGCCATGTCCGTCT......................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTG.....................	23	20	0.10	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGA.......................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................................................................................TCTAGCCATGTCCGTCTGTCC----G.............	22	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................GCCATGTCCGTCTGTCC----GTA...........	20	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ATTCTTGATCAGGATCAATAGCCGAGT..........................................	27	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTC...................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................GCAGAAGGAAGGGTT...........................................................................................	15	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................CGAGTCGATCTAGCCATGTCCG.........................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................GCCGAGTCGATCTAGCCATGTCC..........................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................AGCCGAGTCGATCTAGCC................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................AGCCGAGTCGATCTAGCCATGTC...........................	23	20	0.10	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGATCT....................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................................TCAGGATCAATAGCCGAGT..........................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGTCC----GTA...........	28	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................CAGAAGGAAGGGTTT..........................................................................................	15	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................ATATATTCTTGATCAGGATCAATAGC...............................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................TAAAGTATATATATTCTTGATCAGGAT......................................................	27	20	0.10	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TCAATAGCCGAGTCGATCTAGCCATGTC...........................	28	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATCTAGCCATGT............................	23	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CGATCTAGCCATGTCCGTCTGTCC----GT............	26	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
........................................................................................................AGAAGGAAGGGTTTC.........................................................................................	15	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................TATACTAGATTAGTTG..............................................................................................................................	16	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................TTGATCAGGATCAATAGCCGAGT..........................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................CGATCTAGCCATGTCCGTC.......................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................AGCCGAGTCGATCTAGCCAT..............................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................AGCCGAGTCGATCTAGCCATGTCCG.........................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGT....................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................TGATCAGGATCAATAGCCGAGTCGAT......................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................TCTAGCCATGTCCGTCTGTCC----GT............	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GATCAATAGCCGAGTCGATCTAGCCA...............................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TCTTGATCAGGATCAATAGCCGAGTCGA.......................................	28	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................TTCTTGATCAGGATCAATAGCCG.............................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGC........................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATCTAGCCATGTCC..........................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CTTGATCAGGATCAATAGCCGAGTCGAT......................................	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................CCGAGTCGATCTAGCCATGTCCG.........................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................GTAACAGGCAGAAGGAAG...............................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGTCGA.......................................	29	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TTCCGACTATATAAAGTATATATATT..................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTCTG.....................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................GCCGAGTCGATCTAGCCA...............................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................AACAGGCAGAAGGAA................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................TCTAGCCATGTCCGTCTGTCC----..............	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GTATATATATTCTTGATCAGGATCAATAGC...............................................	30	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ATTCTTGATCAGGATCA....................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................TATATATTCTTGATCAGGATCAATAGCCGA............................................	30	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................AGTCGATCTAGCCATGTCCGTCTGTC...................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................AGTCGATCTAGCCATGTCCG.........................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................GTCGATCTAGCCATG.............................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATCTA...................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................TAGCCATGTCCGTCTGTCC----GTAT..........	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATCTAGCCAT..............................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................TCAGGATCAATAGCCGAGTCGATC.....................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................AGTCGATCTAGCCATGTCCGT........................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................TAGCCATGTCCGTCTGTCC----GT............	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCTGT....................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................GTCGATCTAGCCATGTC...........................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................CTAGCCATGTCCGTCTGTCC----G.............	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TAAAGTATATATATTCTTGATCAG.........................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TCCGACTATATAAAGTATATATATT..................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTGATCAGGATCAATAGC...............................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................GTAACAGGCAGAAGGAA................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................ATAGCCGAGTCGATCTAGCCATGTCCG.........................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GTATATATATTCTTGATCAGG........................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................TTTCCGACTATATAAAGTATATATATT..................................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TATATTCTTGATCAGGATCAATAGC...............................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GAGTCGATCTAGCCATGTCCGTC.......................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CGATCTAGCCATGTCCGTCTGTCC----GTA...........	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCGATCTAGCCATGTCCGTCTGT....................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATCTAGCCA...............................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................TATATATTCTTGATCAGGATCAATA.................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TCAGGATCAATAGCCGAGTCGAT......................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATGG............................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GATCTAGCCATGTCCGTCTGTCC----GT............	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GTCGATCTAGCCATGTCCGTCT......................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................GTCGATCTAGCCATGTCCGT........................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTGATCAGGATCAATAGCCGAGTCG........................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTCTGT....................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................GCCGAGTCGATCTAGCCATGTCCGTCT......................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAGCCATGTCCGTCTGTCC----G.............	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TATTCTTGATCAGGATCAATAGCCGA............................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................AATAGCCGAGTCGATCT....................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................AATAGCCGAGTCGATCTA...................................	18	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................GATCAGGATCAATAGCC..............................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................CAGGATCAATAGCCGAGTCGA.......................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

TTACAGTTAA-CCTG---AAGAACTAATT--T-GTATACCCGTTGCTC--GTA--------GG--ATAAAAGGGTATTG--GAA-----CAGTATGGAATTGAAAGAAGGTAGCCTTTCCGACTATATAAAGTATATATATTCTTGAGCATGATTGCTC-TCAAGTAGATCTGGTCATGTACACTCATCC----GACTGTCCGTATAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TCGACTATAG-CGTT---CT-CTCTTGTT-TA-TTATACCCGTTACTC--GTAGAGTAAAAGG--GTATACTAGATTCGTTGAA-----AAGTATGTAACAGGCAAAAGGAAGCGTTTTCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGTCAAGTCGATCTGGCCATGTCCGTCTGTCC----GTCCGTCTGTCTGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................TC--GTAGAGTAAAAGG--GTATACT........................................................................................................................................	22	20	1.95	39	0	0	0	0	0	0	39	0	0	0	0
................................................................................................................................................................TCAAGTCGATCTGGCCATGTCCGTC.......................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................GCAAAAGGAAGCGTTTTCGACCATA.................................................................................	25	11	0.27	3	0	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................TGTCCGTCTGTCC----GTCCGTCTGTC...	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
..................................TATACCCGTTACTC--GTAGAGTAAAAGG--G..............................................................................................................................................	28	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.................................................................................................AACAGGCAAAAGGAAGCGT............................................................................................	19	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0
............................................................................................TATGTAACAGGCAAAAGGAAGCGTT...........................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TCCGTCTGTCC----GTCCGTCTGT....	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................CAGGCAAAAGGAAGCGTTTTCGACC....................................................................................	25	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
...................................................TAGAGTAAAAGG--GTATACTAGATTC..................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................AAAGTATATATATTCTTGATC...........................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................TAACAGGCAAAAGGAAGC..............................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................TATACTAGATTCGTTGAA-----AAGTA..................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................GTCTGTCC----GTCCGTCTGTC...	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................ATGTAACAGGCAAAAGGAAGCGT............................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................GAA-----AAGTATGTAACAGGCAAAAGGA.................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CTGTCC----GTCCGTCTGTCTG.	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TCTGGCCATGTCCGTCTGTCC----GTCCG.........	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................AGGAAGCGTTTTCGACCATATAAAGT...........................................................................	26	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
............................................................................TCGTTGAA-----AAGTATGTAACAGGCAAA.....................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
....................................................AGAGTAAAAGG--GTATACTAGATTCGTT...............................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................TTCGTTGAA-----AAGTATGTAACAGGCAA......................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TCGACTTTAG-TGTT---CT-TTCTCGTT--T-TTATACCCGTTACTC--GTAGAGAACTTCT----------------------------------TTCTACGAGAAGGAAGTGGTACCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCGAACTGGCCAGGTCCGTCTGTCT----GTCCGTCCGTCTGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dp5

TTCC---------------C-CAACTCTT--T-TTATACCCGATACTC--A--------------AAATTAGT-ATTTAGTGTA-----ACTAGTGTAACGTCCAATAGAAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATGGAGCCATGTCTGTCTGTCT----GTCCGTCCGTCCGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................................AGTCGATGGAGCCATGTCTGT........................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................CGTCCAATAGAAAGCGTTTCC........................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATGGAGCCATG.............................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................CGATGGAGCCATGTCTGTCTG.....................	21	2	1.00	2	0	1	0	0	0	0	1	0	0	0
..................................................................................................................................................................GAGTCGATGGAGCCATGTCTG.........................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................ATAGCCGAGTCGATGGAGCC................................	20	5	0.80	4	0	3	0	1	0	0	0	0	0	0
.......................................................................................................................................................................GATGGAGCCATGTCTGTCTGT....................	21	3	0.67	2	0	1	0	0	0	0	1	0	0	0
..............................................................................................................................................................AGCCGAGTCGATGGAGCCATG.............................	21	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................GAGTCGATGGAGCCATGTCT..........................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................CGATGGAGCCATGTCTGTC.......................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TCAGCATCAATAGCCGAGTCGAT......................................	23	20	0.45	9	0	9	0	0	0	0	0	0	0	0
.............................................................................................................................................................TAGCCGAGTCGATGGAGCC................................	19	5	0.40	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................ATTCTTGATCAGCATCAATAGCCGAGT..........................................	27	20	0.40	8	0	0	0	0	0	0	0	8	0	0
...........................................................................................................................................................AATAGCCGAGTCGATGGAGCC................................	21	5	0.40	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................CGAGTCGATGGAGCCATGTC...........................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................ATAGCCGAGTCGATGGAGCCA...............................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TGTCTGTCT----GTCCGTCCGTCCG.	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GAGCCATGTCTGTCTGTCT----G.............	20	20	0.25	5	0	3	0	0	0	0	0	0	2	0
...............................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGATG.....................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TGATCAGCATCAATAGCCGAG...........................................	21	20	0.20	4	0	0	0	0	0	4	0	0	0	0
.................................................................................................................................................................CGAGTCGATGGAGCCATGTCTT.........................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GAGCCATGTCTGTCTGTCT----GT............	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GAGCCATGTCTGTCTGTCT----GTCC..........	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...........................TT--T-TTATACCCGATACTC--A--------------AAATT..........................................................................................................................................	24	16	0.06	1	0	0	0	0	0	0	0	0	1	0
...................................ATACCCGATACTC--A--------------AAATTAGT-......................................................................................................................................	22	18	0.06	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................CCATAAAGTATATATATTCTT...............................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................CATAAAGTATATATATTCTT...............................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................TCCGACCCCATAAAGTATATATA....................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................AGCCATGTCTGTCTGTCT----G.............	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................AAGTATATATATTCTTGATCAGCATCA....................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0

droPer2

GTGTGGTTGC-CCGTTTTTT-TTCCCCTT--T-TTATATTG--------------------GGGTATATTAGATTTGTGGTGAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCT----GTCTGTCCGTCCGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................TGAGCCCTGTCTGTCTGTCT----GTCTGTC.......	27	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................TGAGCCCTGTCTGTCTGTCT----GTCTG.........	25	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................CCTGTCTGTCTGTCT----GTCTGTCCG.....	24	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................TCTGTCTGTCT----GTCTGTCC......	19	20	0.05	1	1	0	0	0	0	0
.............................................................................................GTGTAACGTCCAGAAGGA.................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droWil2

TTTA-----C-CATC---TT-TTTTTGTT--T-TTATACCC-------TTGCAG------AGG--GTATTATAAAATTGGTCAG-----ATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATGAGAAGCTAAGTCGATATAGCCATGTCCGTCTGTCC----GTCTGACCGTCTGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................TGAGAAGCTAAGTCGATATAGCCATG.............................	26	20	0.30	6	0	4	0	2	0
..........................................................................................TGTTTGTAACGCACAGAAGGAGACG.............................................................................................	25	20	0.30	6	0	6	0	0	0
...................................................................................................CGCACAGAAGGAGACGTTTCCGACC....................................................................................	25	20	0.25	5	0	5	0	0	0
.................................................................................................................................................................TAAGTCGATATAGCCATGTCCGTCTG.....................	26	20	0.25	5	0	0	0	5	0
.............................................................................TGGTCAG-----ATGTTTGTAACGCACAGA.....................................................................................................	25	20	0.15	3	0	3	0	0	0
..................................................................................................ACGCACAGAAGGAGACGTTTCCGACC....................................................................................	26	20	0.10	2	0	0	0	2	0
...................................................................................................CGCACAGAAGGAGACGTTTCCGACCC...................................................................................	26	20	0.10	2	0	2	0	0	0
..............................................................................................TGTAACGCACAGAAGGAGACGTT...........................................................................................	23	20	0.10	2	0	0	0	2	0
.....................................................................TATAAAATTGGTCAG-----ATGTTT.................................................................................................................	21	20	0.10	2	0	2	0	0	0
............................................................................................TTTGTAACGCACAGAAGGAGACG.............................................................................................	23	20	0.05	1	0	1	0	0	0
.........................................................................................................GAAGGAGACGTTTCCGACCCCATAA..............................................................................	25	20	0.05	1	0	1	0	0	0
...............................................................................GTCAG-----ATGTTTGTAACGCACA.......................................................................................................	21	20	0.05	1	0	1	0	0	0
.................................................................GTATTATAAAATTGGTCAG-----ATG....................................................................................................................	22	20	0.05	1	0	0	0	1	0
...........................................................................ATTGGTCAG-----ATGTTTGTAACG...........................................................................................................	21	20	0.05	1	0	0	1	0	0
..................................................................................AG-----ATGTTTGTAACGCACAGAAGGAGA...............................................................................................	26	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................TGAGAAGCTAAGTCGATATAG..................................	21	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................TGTCCGTCTGTCC----GTCTGACCGTCTGT	27	20	0.05	1	0	0	0	1	0
................................................................................................TAACGCACAGAAGGAGACGTTTCCGACC....................................................................................	28	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................TATAGCCATGTCCGTCTGTCC----GTCT..........	25	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................TAAGTCGATATAGCCATGTCCGTCT......................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................GTCGATATAGCCATGTCCGTC.......................	21	20	0.05	1	0	0	0	1	0
.........................................................................................................GAAGGAGACGTTTCCGACC....................................................................................	19	20	0.05	1	0	1	0	0	0
..............................................................................................................................................CTTGATCAGCATGAGAAGCT..............................................	20	20	0.05	1	0	1	0	0	0
....................................................................................................................................................CAGCATGAGAAGCTAAGTCGATATAG..................................	26	20	0.05	1	0	0	0	0	1
..................................................................................................................................................ATCAGCATGAGAAGCTAAGTCGATATAG..................................	28	20	0.05	1	0	1	0	0	0
..................................................................................................ACGCACAGAAGGAGACGTTTCCGAC.....................................................................................	25	20	0.05	1	0	0	0	1	0
..........................................................................AATTGGTCAG-----ATGTTTGTAACGCACAG......................................................................................................	27	20	0.05	1	0	1	0	0	0
.............................................................................................................................................TCTTGATCAGCATGAGAAGCTAAG...........................................	24	20	0.05	1	0	0	0	1	0
.......................................CC-------TTGCAG------AGG--GTATTATAAAATTGGT...............................................................................................................................	27	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................TAGCCATGTCCGTCTGTCC----GTCTGACCC.....	28	20	0.05	1	0	1	0	0	0
........................................................................................................................................TATATTCTTGATCAGCATGAGA..................................................	22	20	0.05	1	0	0	0	1	0

droVir3

CGA-AGACAGCCCTT---CA-TTCTCGTT--TTTAATAACC-------TTGCAG------AGG--GTATTATAATTTTGTCGTG-----AAATGTGTAACGCATAGAAGGAGACATCTCCGACCCCATAAAGTATATATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCC----GTCTGTCCGTCTGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................AAATGTGTAACGCATAGAAGGAGACATC...........................................................................................	28	20	7.50	150	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	0	0	0	6	0	94	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAATGTGTAACGCATAGAAGGAG................................................................................................	23	20	7.25	145	0	0	0	0	0	0	0	0	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAATGTGTAACGCATAGAAGGAGAC..............................................................................................	25	20	5.30	106	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAATGTGTAACGCATAGAAGGAGACAT............................................................................................	27	20	1.90	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAATGTGTAACGCATAGAAGG..................................................................................................	21	20	0.85	17	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAATGTGTAACGCATAGAAG...................................................................................................	20	20	0.70	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAATGTGTAACGCATAGAAGGAGACA.............................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAATGTGTAACGCATAGAAGGAGA...............................................................................................	24	20	0.30	6	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TATATTCTTAATCAGCATCAACAGCCG.............................................	27	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................ATATTCTTAATCAGCATCAACAGCC..............................................	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TTCTTAATCAGCATCAACAGCCGAG...........................................	25	20	0.20	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AAATGTGTAACGCATAGAAGGA.................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CAGCATCAACAGCCGAGTCGATATAG..................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TATAATTTTGTCGTG-----AAATGTGTA..............................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCGATATAGCCATGTCCGTCTGTCC----..............	25	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAGCCATGTCCGTCTGTCC----G.............	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AATGTGTAACGCATAGAAGGAGACA.............................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................G-----AAATGTGTAACGCATAGAAGGAG................................................................................................	24	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TGCAG------AGG--GTATTATAATTTTGTCG..............................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TG-----AAATGTGTAACGCATAGAAGGAG................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TATATATTCTTAATCAGCATCAACAG................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GTGTAACGCATAGAAGGAGACATCTCC........................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TCCGACCCCATAAAGTATATATA....................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TCTTAATCAGCATCAACAGCCGAGTCG........................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TAATCAGCATCAACAGCCGAGTCGATA.....................................	27	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TGTAACGCATAGAAGGAGACATCTCC........................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TATATATTCTTAATCAGCATCAACAGC...............................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AATGTGTAACGCATAGAAGG..................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTAATCAGCATCAACAGCCGAGTCG........................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACCCCATAAAGTATATATATTC.................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GTAACGCATAGAAGGAGACATCTCCGA......................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................ATCAGCATCAACAGCCGAGTCGATATA...................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................CGATATAGCCATGTCCGTCTG.....................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................AATGTGTAACGCATAGAAGGA.................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................AATGTGTAACGCATAGAAGGAGA...............................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TAATCAGCATCAACAGCCGAGTCGA.......................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCGATATAGCCATGTCCGTCTG.....................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TGTGTAACGCATAGAAGGAGACATCT..........................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GTG-----AAATGTGTAACGCATAGAAGGAG................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TATATTCTTAATCAGCATC.....................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CAGCATCAACAGCCGAGTCGATATAGC.................................	27	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ATTCTTAATCAGCATCAACAGCCGAG...........................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................TGTGTAACGCATAGAAGGAGA...............................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TAACGCATAGAAGGAGACATCTCCG.......................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................ACGCATAGAAGGAGACATCTCCGAC.....................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TAATCAGCATCAACAGCCGAGTCGATAT....................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CATCAACAGCCGAGTCGATATAGC.................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TAATCAGCATCAACAGCCGAGTC.........................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CGCATAGAAGGAGACATCTCCGACCCC..................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................G-----AAATGTGTAACGCATAGAAGGA.................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTAATCAGCATCAACAGCCGAGTCGA.......................................	26	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TAATCAGCATCAACAGCCGAGTCG........................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TTATAATTTTGTCGTG-----AAATGTGTA..............................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TTCTTAATCAGCATCAACAGCCGAGTCG........................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GTGTAACGCATAGAAGGA.................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TATATTCTTAATCAGCATCAAC..................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................TAACGCATAGAAGGAGACATCTCCGACC....................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CAGCATCAACAGCCGAGTCGATA.....................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................AACGCATAGAAGGAGACATCTCCGACC....................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GATATAGCCATGTCCGTCTGTCC----..............	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TATATTCTTAATCAGCATCAACAGCCGA............................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TG-----AAATGTGTAACGCATAGAAGGAGAC..............................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................ATATATATTCTTAATCAGCATC.....................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TATATTCTTAATCAGCATCAACAGC...............................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCGACTGGAG-CCTT---CT-TACTTGTT--T-TTA------------------------------TATAATGGTTTTGTTGAA-----ATGTATGTAACAGGCAGAATGAGGCGTGGCAGACCCCACAAAGTATACATATTCTTGATCAAGGTGACGAGCTGAGTCGATTTGGCCCTGTCCGTCTGTCT----GTCCGTCCATCCGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................GAGTCGATTTGGCCCTGTCCGTCTG.....................	25	20	0.10	2	0	0	0	0	2	0
..........................................................................................TGTATGTAACAGGCAGAATGAGGCGT............................................................................................	26	10	0.10	1	0	0	0	0	0	1
...................................................................................................CAGGCAGAATGAGGCGTGGCA........................................................................................	21	14	0.07	1	0	0	0	0	1	0
..........................................................................................................................CCCCACAAAGTATACATATTCTTGATCA..........................................................	28	17	0.06	1	1	0	0	0	0	0
........................................................................................................................................................GTGACGAGCTGAGTCGATTTGGCCCTG.............................	27	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................ACCCCACAAAGTATACATATTCTT...............................................................	24	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................TGACGAGCTGAGTCGATTTGGCCC...............................	24	20	0.05	1	0	0	0	0	1	0
...........................................................................................GTATGTAACAGGCAGAATG..................................................................................................	19	20	0.05	1	0	0	1	0	0	0

droGri2

AAA---TTCC-CTTT--TAT-TGCTTCATTAA-AAATATCT-------GTGCT-------------TAATTTATGATTTATATG-----AAATAGGCAACGCATTGAAGGAGACCTCTCCGACCCCATAAAGTATTTAGATTCTTGATCAGCTTCACTACCTGAGTCGATATAGCCTTTTGCGTCTGTGT----ATCTGTCTGAATAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_42

scaffold_13258:692131-692204 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.5	-17.1	-17.0