dan_419

exon [dana_GLEANR_7491:4]; CDS [Dana\GF22953-cds]; CDS [Dana\GF22953-cds]; exon [dana_GLEANR_7491:5]; intron [Dana\GF22953-in]

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACCGAGAACAGTTGTGCCCCAATCTGCGAGGGTGGATGTAAGAACGGATTGTGTGACTCTCCTGGAAAGTGTTCTTGCAACGAAGGATACAGCAAGGAAACAGAGAATACCTGTGCCCCAATTTGTGATGGAGGATGTAAGAATGGATTTTGTGAATCTCCTGGAAAGTGTTCCTGTAACAATGGATACATTAAATCTCCTGAAGGCGGGTGTATACCTCTTTGTTCCAAGGGTTGCCAAAATGGTAAATGCGAATCCCCCGATGTTTGCAGATGTGAGGATGGTTTTACTTATGATGTGGATGTCGGAAGGTGTGTGTCAG **************************************************************************************............((.(((((.((....(((((........))).))..........))))))).))...*******************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	V039 embryo	V055 head	V105 male body	M044 female body	V106 head
...................................................................................................................................................................GAAAGTGTTCCTGTACCA.............................................................................................................................................	18	1	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................TGAAAGTGTTCCTGTAACCA............................................................................................................................................	20	2	1	2.00	2	1	1	0	0	0	0
...................................................................................................................................................................GAAAGTGTTCCTGTAAGA.............................................................................................................................................	18	1	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................TGAAAGTGTTCCTGTAACAC............................................................................................................................................	20	2	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................TGGAAAGTGTTCCTGTAACTACC..........................................................................................................................................	23	3	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................TGAAAGTGTTCCTGTACCA.............................................................................................................................................	19	2	2	1.00	2	1	0	1	0	0	0
...................................................................................................................................................................GAAAGTGTTCCTGTAACCA............................................................................................................................................	19	1	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................GAAAGTGTTCCTGTAACCAC...........................................................................................................................................	20	2	2	1.00	2	2	0	0	0	0	0
...................................................................................................................................................................GAAAGTGTTCCTGTAAAAA............................................................................................................................................	19	1	2	0.50	1	1	0	0	0	0	0
................................TGGATCTAAGAACGGCTTGCG.............................................................................................................................................................................................................................................................................	21	3	2	0.50	1	0	0	1	0	0	0
...................................................................................................................................................................GAAAGTGTTCCTGTAACC.............................................................................................................................................	18	1	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................................GAAAGTGTTCCTGTAAAA.............................................................................................................................................	18	1	5	0.40	2	0	2	0	0	0	0
...................................................................................................................................................................GAAAGTGTTCCTGTACCAC............................................................................................................................................	19	2	4	0.25	1	1	0	0	0	0	0
........................................................................................ACAGCAAGGAAACAGAGAATACCT..................................................................................................................................................................................................................	24	0	5	0.20	1	0	1	0	0	0	0
...................................................................................................................................................................GAAAGTGTTCCTGTAAAAAA...........................................................................................................................................	20	2	7	0.14	1	1	0	0	0	0	0
................................GGGATGTAAAAAAGGATTGTG.............................................................................................................................................................................................................................................................................	21	3	8	0.13	1	0	0	1	0	0	0
..................................................................................................................................................................TGAAAGTGTTCCTGTACCAC............................................................................................................................................	20	3	10	0.10	1	1	0	0	0	0	0
....................TATCTGGGAGGGTGGATG............................................................................................................................................................................................................................................................................................	18	2	11	0.09	1	0	0	1	0	0	0
....................................................................................................................................................................AAAGTGTTCCTGTAACCACC..........................................................................................................................................	20	3	12	0.08	1	1	0	0	0	0	0
...................................................................................................................................................................GAAAGTGTTCCTGTACCCAA...........................................................................................................................................	20	3	14	0.07	1	1	0	0	0	0	0
......................................................................................................................................ATGTAAGAATGGATTTTGTGAAT.....................................................................................................................................................................	23	0	17	0.06	1	0	0	0	1	0	0
..................................................................................................................................................................TGAAAGTGTTCCTGTAACCC............................................................................................................................................	20	3	17	0.06	1	1	0	0	0	0	0
............................ACGGTGGCTGAAAGAACGG...................................................................................................................................................................................................................................................................................	19	3	18	0.06	1	0	0	0	0	1	0
.................................................................................................................................................................TTGAAAGTGTTCCTGTACCC.............................................................................................................................................	20	3	18	0.06	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................GTTGTGGATGTGGGAAGG..........	18	2	18	0.06	1	0	0	0	0	0	1
.......................................................................................................................................................GTGAATCTCCTGGAAAGT.........................................................................................................................................................	18	0	19	0.05	1	0	0	0	1	0	0
.................................................................................................................................................................TTGAAAGTGTTCCTGTCACC.............................................................................................................................................	20	3	20	0.05	1	1	0	0	0	0	0

TGGCTCTTGTCAACACGGGGTTAGACGCTCCCACCTACATTCTTGCCTAACACACTGAGAGGACCTTTCACAAGAACGTTGCTTCCTATGTCGTTCCTTTGTCTCTTATGGACACGGGGTTAAACACTACCTCCTACATTCTTACCTAAAACACTTAGAGGACCTTTCACAAGGACATTGTTACCTATGTAATTTAGAGGACTTCCGCCCACATATGGAGAAACAAGGTTCCCAACGGTTTTACCATTTACGCTTAGGGGGCTACAAACGTCTACACTCCTACCAAAATGAATACTACACCTACAGCCTTCCACACACAGTC *******************************************************************************************************************************************************************............((.(((((.((....(((((........))).))..........))))))).))...**************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V039 embryo	V055 head	M058 embryo
............................TCCCACCTACAGTCTTGCCT..................................................................................................................................................................................................................................................................................	20	1	2	0.50	1	1	0	0
...........................................TGCCTATCAGACCGAGAGGA...................................................................................................................................................................................................................................................................	20	3	4	0.25	1	0	1	0
..................................................................................................................................................................................................................................................ACCATTGACGTTTAGGGG..............................................................	18	2	5	0.20	1	0	0	1
.......................................................................................................................................................................................................................................................................................CCACCAAAATGCATACGACA.......................	20	3	11	0.09	1	1	0	0
....................................................................................CCTACGTGGGTCCTTTGTCT..........................................................................................................................................................................................................................	20	3	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_12911:3843604-3843925 -	dan_419	ACC------GAGAACAGTTGTGCCCCAATCTGCGAGGGTGGATGTAAGAACGGATTGTGTGACTCTCCTGGAAAGTGTTCTTGCAACGAAGGATACAGCAAGGAAACAGAGAATACCTGTGCCCCAATTTGTGATG-GAGGATGTAAGAATGGATTTTGTGAATCTCCTGGAAAGTGTTCCTGTAACAATGGATACATTAAATCT------CCTGAAGGCGGGTGTATACCTCTTTGTTCCAAGGGTTGCCAAAATGGTAAATGCGAATCCCCCGATGTTTGCAGATGTGAGGATGGTTTTACTTATGATGTGGATGTCGGAAGGTGTGTGTCA----G------------------------------------------------------
droBip1	scf7180000396640:699183-699504 -		TCT------GAGAACAGCTGTGCACCAATTTGCGAAGAAGGTTGCAAAAACGGATTCTGTGAATCTCCTGGAAAGTGTTCCTGCTACGAAGGATACAGCAAGGAATCTGAGAATAGCTGTGCACCAATCTGCGAAG-AAGGATGCAAGAACGGATTCTGTGAATCTCCTGGAAAGTGTTCCTGCAAAAATGGCTACGTCAAATCT------TTAGAAAGCGAGTGTATGCCTCTTTGTTCCAAGGGCTGTCAGAACGGAAAGTGCGAAGCCCCCGATGTTTGCAGATGCGAAGTCGGCTTTGCCTATGATGTGGACTTAGGAGCTTGTGTGCCG----G------------------------------------------------------
droKik1	scf7180000302810:478676-478990 +		ACT------AAGGACAAATGTGAGCCAGTCTGCAGGGAGGAATGCGAGAATGGATACTGTTCCTCTCCTGGTAAATGCTCCTGCAACGAAGGATTCAAGATGAATACTAAGGACAAATGTGAGCCAGTCTGCAACG-AGGAATGCGAGAATGGATACTGTTCCTCTCCTGGTAAATGCTCCTGCAACGAAGGATTCAAGATGAAT------ACTAAGGACAAATGTGAGCCAGTCTGCAGAGAGGAATGCGAGAATGGATACTGTTCCTCTCCTGGAAAGTGCACCTGCAACGAAGGATACGAGATGAGTGCTGAG---AACAAGTGTGCC--------------------------------------------------------------
droFic1	scf7180000453776:103091-103412 -		ACT------GGGAACAAGTGTGTTCCAGTTTGCAGAGATGGATGTGAGAACGGATTGTGTTCTGCACCTGAAAAATGTACATGCAATGAAGGATATTCCTGGAAAAGTAATACATCTTGTGCTCCACTCTGCAATA-ACGGATGTCCAAATGGGTCTTGTAAGTTACCTGGAAAGTGCGACTGCAATGATGGTTTCAAAAAGGAT------TTAAATGGCGATTGCATACCTCACTGTTCCAGTTTATGCCAGAACGGCATGTGCGTTTCTCCAGGTGTTTGCCAGTGTGAGCAAGATTTTATTTTCGATGTGCGAACTGGAAATTGTGTGCTG----A------------------------------------------------------
droEle1	scf7180000491280:974428-974749 -		AAT------AAGATCAAGTGTGTTCCAATTTGCAAAGGTGGATGTGAGAACGGAATCTGTTCCGCTCCCGGAATATGTTCATGCAATGAGGGATATGCCCGTGCGGGTAACGAGACTTGTATTCCAACCTGTAAGA-AGGGATGTCAAAATGGATTATGTAAGTTGCCTGGGCAGTGTCAGTGTTTCGACGGGTTTAAAAAGTCG------GTCGATGGTGATTGCGAGCTCCACTGTCCCAGTTCATGTCAGAATGGCAAATGCATTTCTCCAGGTATTTGCAAGTGTGATGACGGCTTTATTTTTGATGGGCAAACTGGAAGCTGTTTACCT----G------------------------------------------------------
droRho1	scf7180000768882:28757-29078 -		AAT------GCGAGCAAGTGCGTGGCAATATGCGTAGGTGGATGTTATAATGGATTCTGTTCCTCTCCCGGGATGTGTTCATGCAATAAGGGATATGCCAGTGAGTCCAACAATAGTTGTATTCCAACCTGTAAAA-ACGGATGCCGAAATGGGTCATGTAAGATGCCTGGGCAGTGTCAGTGCTTCGATGGTTTTAAAATGACA------GTGGAAGGGGATTGCGTGCCCCACTGTCCAAGTCTATGTCAGAATGGCAAATGTGTTTCTCCAGGTGTTTGCAAGTGCGACGACGGCTTTGTATTCGCTGCGCAAACGGGAAGCTGTCTGCCT----G------------------------------------------------------
droBia1	scf7180000302113:3201226-3201547 -		AGT------GAGGAAAAGTGTGTCCCAGTTTGCACAGGTGGATGTGAGAATGGATTCTGTGCTTCTCCGGAAAAGTGTTCCTGCAACATCGGATACGAAATGAACAGTGTGAACAAGTGTGTTCCAGTTTGCTCGA-AAGGATGTGAAAATGGATTCTGTGCATCTCCTGAAAAGTGTTCCTGCTATGAAGGATATACCAAGGAC------ACAGAGAACAGTTGTGCACCAGTTTGCTCGAAAGGATGTAAGAACGGATTTTGTATTTCTCCGGAAGTTTGCAAGTGCAACGAGGGCTTTGTCTCTTCAGAAGAATCGGATACGTGCCTCCCT----G------------------------------------------------------
droTak1	scf7180000410579:346195-346439 +		AGT------GAGAACAGATGTGTTCCAGTTTGTACAGGTGAATGTAAGAACGGATTTTGTGCTTCGCCGGGAAAGTGTTCCTGCAATGAAGGATACAGCAAGGAAACGGAGAACAGTTGTGCACCAGTTTGCTCGA-AGGAATGTGAGAACGGATTTTGTTCTTCACCTGAAAAGTGTTCCTGCAATGAAGGATACATAATGGAT------AGTGAGAACAGATGTGTTCCAGTTTGTACAGGTGAATGTAAGAACGG---------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409770:395844-396176 -		AGTGGTAGTGAGAACAGGTGTGTTCCAGTGTGCAGAGGTGGATGCAAGAACGGATTTTGTGCCTCTCCAGGAAAGTGTTCTTGTAATAAAGGATACAGCAAGGAATCGAATTCTACGTGCTCACCAGTTTGCACGA-AAGGATGCGAGAACGGCTTCTGTGTTTCTCCAGAGAAGTGTTTGTGCAATAACGGATTTGAAATGGAGAGTGGCAGTGGGAACAGGTGTGTTCCAGTGTGCACAGGTGGATGCGAGAACGGTTTCTGCGTTTCTCCAGGCGCTTGCAGTTGCAATGATGGTTTTTTTTGT-CCAAAGAAACGGGTAGTTGTCTGCTT----G------------------------------------------------------
dm3	chr3R:22922568-22922870 -		ACA------GGAAACAGTTGCAAACCAATTTGCTCAAAAGGATGTGAGAACGGATTCTGTGATGCACCAGAAAAGTGTTCCTGCAATGATGGATATGAAATGGACAGTGAAAACAGATGTTCTCCAGTTTGCTCAG-GTGGATGCAAGAACGGATTCTGCGTTGCCCCAGGAAAGTGTTCCTGTGATGAAGGATACAGCAAGGAA------ACAGGAAACAGTTGCAAACCAATTTGCTCAAAAGGATGTGAGAACGGATTTTGTGAAGCACCAGAAAAGTGTTCCTGCAATGATGGATATGAAATGGACGGTGAA-----------------------------------------------------------------------------
droSim2	3r:22372931-22373242 -		ACA------GAAAACAGTTGTACACCAATCTGCTCCAGAGGATGTGAGAACGGATTCTGTGATGCCCCAGAAAAGTGTTCCTGCTATGATGGATATGCAATGGCCAGTGAAAACAGATGTTCTGCAGTTTGCTCAG-GTGGATGCAAGAATGGATTCTGTGTTGCCCCAGGAAAGTGTTCCTGTTATGAAGGATACAGCATGGAA------ACAGAAAACAGTTGTACACCAAATTGCTCCAGAGGATGTGAGAACGGATTCTGTGATGCCCCAGAAAAGTGCTCCTGCAATGATGGATATGCAATGGACAGTGGG---AACAGATGT-----------------------------------------------------------------
droSec2	scaffold_13:1684544-1684846 -		ACA------GAAAACAATTGTACACCAATCTGCTCCAGAGGATGTGAGAACGGATTCTGTGATGCCCCAGAAAAGTGCTCCTGCTATGATGGATATGCAATGGACAGTGAAAACAGATGTTCTCCAGTTTGCTCAG-GTGGATGCAAGAACGGTTTCTGTGATGCCCCAGGAAAGTGTTCCTGTGATGAAGGATACAGCATGGAA------ACAGAAAACAGATGTACACCAATCTGCTCCAGAGGATGTGAGAACGGATTCTGTGATGCCCCAGAAAAGTGCTCCTGCAATGATGGATATGCAATGGACAGTGAA-----------------------------------------------------------------------------
droYak3	3R:23567350-23567671 +		ACG------AATAACAGTTGTTCACCAATCTGCTCAAAAGAATGTGAGAACGGATTCTGCGCTGCTCCAGAACAGTGTTCCTGTAATGAAGGATACAGGATGGAAACGAATAACAGTTGTTCACCAATCTGCTCAA-CAGAATGTGAGAACGGATTCTGTGTTGCCCCAGAGGAGTGTTCTTGCTATGAAGGATACAGCAAGGAA------ACTGAAAATAGTTGTGCACCTATTTGTAAGGATGGGTGTGACAACGGGCATTGCGTATCTCCAAATGTTTGCAAGTGTAATGTCGGATTTTTATACCTGGCAGAATATAGAAGTTGTGGACTT----G------------------------------------------------------
droEre2	scaffold_1228:57-374 +		AGT------GAAAACAGGTGTGTACCAATCTGCTCCAGAGTATGTGAAAACGGATTCTGTGTTGCCCCAGAGAAGTGTTCCTGTAATGAAGGATACCGGATGGAAACGAACAACAGTTGTTCCCCAATCTGCTCAA-GAGAATGTGAGAACGGATTTTGTGCTGCTCCAGAAGAGTGTTCCTGTAATGAGGGGTATAACATGGAC------AGTGAAAACAAGTGTGTACCAATCTGCTCAAGACGATGTGAGAACGGATTCTGTGAAGCTCCAGAAAAGTGTTCATGCAATGAGGGATATAAAATGGACAGTGAA---AACAGGTGTGTACCA-----------------------------------------------------------
dp5	2:8528239-8528560 -		AGT------GAGAACAGATGTGCTCCCATTTGTGAGGACGGATGTGAGAACGGATTCTGCGAGTCTCCCGGAAGGTGTTCCTGCAACGAAGGATACGCAAAGGAGAGTGAGAACAGATGTGTTCCCATCTGCGAGG-ACGGATGTGAGAATGGATTCTGCGTGGCGCCTGGGCTGTGCTCGTGTATCGAAGGATACATCAGGATC------AGAGACGGCACCTGCAAGCCCTATTGCCCAAATGGATGTTTCAATGGCTCCTGCGTCGCACCCAATGTTTGTAATTGCGAGAATGGTTCTGTCTATGAGTTCTCGTCAGGGATGTGTGTCCCT----G------------------------------------------------------
droPer2	scaffold_0:2360983-2361360 -		AGT------GAGAACAGATGTGCTCCCATTTGTGAGGGCGGATGTGAGAACGGATTCTGCGAGTCTCCCGGAAAGTGTTCCTGCAACGAAGGATACGCAATGGAGAGTGAGAACAGATGTGCTCCCATCTGCGAGGGACGGATGTGAGAACGGATTCTGCGAGTCTCCCGGAAGATGTTCTTGCAACGAAGGATACGCAAAGGAG------AGTGAGAACAGATGTGCCCCCATTTGTGAGGGCGGATGTAAAAACGGATTCTGCGAGTCTCCCGGAAAGTGTTCCTGCAACGAAGGATACACAAAGGAGAGTGAG---AACAGATGTGCTCCTATTTGTGAGGATGGATGTGAGAACGGATTCTGCGAGTCTCCCGGAAAGTGTTCCTGCAA
droWil2	scf2_1100000004902:7654547-7654869 +		ACT------GAGAACAAGTGTGCCCCTGTCTGCGAAGAAGGATGTGAGAATGGATTCTGCGAGTCACCGGGAATCTGTTCCTGTTTTGAGGGTTACAAGAAGGAAACTGAGAATAAGTGTGCCCCTGTCTGCGAAG-AAGGATGTGAGAATGGATTCTGTGAGTCACCCGGAAAGTGTTCCTGTCTTGAGGGTTATAAAAAAGAA------ACCGAAAACAAGTGTGCCCCTGTCTGCGAAGAAGGATGTGAGAATGGATTCTGTGAGTCACCCGGAAAGTGTTCATGCAACGAGGGCTACAAGCAGGAAACTGAG---AACAAGTGTGCCCCTGTCTG------------------------------------------------------
droVir3	scaffold_13047:9634636-9634921 +		AGT------GAGAACAGATGTGCACCTGTGTGCAAGGACGGCTGTGAGAACGGATTCTGTAGTGCGCCTGGGGAATGTACTTGTCATCAAGGATATTCTATAGTGAGTGCGTATAGTTGTGCTCCAGTTTGCAAGG-ACGGATGTGAGAACGGATATTGCAGTGCGCCAGGGGAATGCACTTGTGACGAAGGCTACAGTAAAGTC------AGTGAGAACAGATGTGCACCTGTGTGCAAGGAGGGATGTGAGAACGGATATTGCAGTGCGCCAGGTGAATGCACTTGTGACGAAGGCT----------------------------------------------------------------------------------------------
droMoj3	scaffold_1722:4109-4399 +		TCT------GAGATTAGATGTGCTCCAGAATGTAAAGATGGATGCGAGAACGGTTTCTGTAGTGCTCCAGGAAAATGCACCTGTAACGAAGGATATTCTCCAGTCACTGAGAATAGATGTGCTCCCGAATGTAAAG-ATGGATGCGAGAACGGATTCTGTAGTGCTCCAGGGAAATGTACCTGTAACGAAGGATATTTGCCTTTG------ACTGAAAGCAGATGTGCTCCAGAATGTAAAGATGGATGCGAGAACGGTTTCTGTAGTGCACCAGGGCAATGCAGCTGTAATGAAGGATTTTCT-----------------------------------------------------------------------------------------
droGri2	scaffold_14906:2535826-2536144 +		ACA------GAGAATAGTTGTTCACCAGTATGTAAAGATGGTTGTGAGAATGGATTTTGCTCTGCTCCTGGAGAATGTTCCTGCAACGATGGATATTCTAAAGTGAATGAGAACAGCTGTGCTCCAGTCTGTAACA-ATGGATGTCAGAACGGATTATGTACTGCTCCTGAGGAATGCACCTGTAACGATGGCTATTCTAAAGTA------ACAGAGAACAGTTGTTCACCAGTATGTAAAGATGGTTGTGAGAATGGATTTTGCTCTGCTCCTGGAGAATGTTCCTGTAACGATGGATATTCTAAAGTGAATGAG---AACAGCTGTGCTCCA----G------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

ACC------GAGAACAGTTGTGCCCCAATCTGCGAGGGTGGATGTAAGAACGGATTGTGTGACTCTCCTGGAAAGTGTTCTTGCAACGAAGGATACAGCAAGGAAACAGAGAATACCTGTGCCCCAATTTGTGATG-GAGGATGTAAGAATGGATTTTGTGAATCTCCTGGAAAGTGTTCCTGTAACAATGGATACATTAAATCT------CCTGAAGGCGGGTGTATACCTCTTTGTTCCAAGGGTTGCCAAAATGGTAAATGCGAATCCCCCGATGTTTGCAGATGTGAGGATGGTTTTACTTATGATGTGGATGTCGGAAGGTGTGTGTCA----G------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................GAAAGTGTTCCTGTAACC.............................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0
..............................................................................................ACAGCAAGGAAACAGAGAATACCT...................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	1	0	0	0
.............................................................................................................................................ATGTAAGAATGGATTTTGTGAAT.....................................................................................................................................................................................................................................	23	17	0.06	1	0	0	0	0	1	0
..............................................................................................................................................................GTGAATCTCCTGGAAAGT.........................................................................................................................................................................................................................	18	19	0.05	1	0	0	0	0	1	0

droBip1

TCT------GAGAACAGCTGTGCACCAATTTGCGAAGAAGGTTGCAAAAACGGATTCTGTGAATCTCCTGGAAAGTGTTCCTGCTACGAAGGATACAGCAAGGAATCTGAGAATAGCTGTGCACCAATCTGCGAAG-AAGGATGCAAGAACGGATTCTGTGAATCTCCTGGAAAGTGTTCCTGCAAAAATGGCTACGTCAAATCT------TTAGAAAGCGAGTGTATGCCTCTTTGTTCCAAGGGCTGTCAGAACGGAAAGTGCGAAGCCCCCGATGTTTGCAGATGCGAAGTCGGCTTTGCCTATGATGTGGACTTAGGAGCTTGTGTGCCG----G------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACT------AAGGACAAATGTGAGCCAGTCTGCAGGGAGGAATGCGAGAATGGATACTGTTCCTCTCCTGGTAAATGCTCCTGCAACGAAGGATTCAAGATGAATACTAAGGACAAATGTGAGCCAGTCTGCAACG-AGGAATGCGAGAATGGATACTGTTCCTCTCCTGGTAAATGCTCCTGCAACGAAGGATTCAAGATGAAT------ACTAAGGACAAATGTGAGCCAGTCTGCAGAGAGGAATGCGAGAATGGATACTGTTCCTCTCCTGGAAAGTGCACCTGCAACGAAGGATACGAGATGAGTGCTGAG---AACAAGTGTGCC--------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACT------GGGAACAAGTGTGTTCCAGTTTGCAGAGATGGATGTGAGAACGGATTGTGTTCTGCACCTGAAAAATGTACATGCAATGAAGGATATTCCTGGAAAAGTAATACATCTTGTGCTCCACTCTGCAATA-ACGGATGTCCAAATGGGTCTTGTAAGTTACCTGGAAAGTGCGACTGCAATGATGGTTTCAAAAAGGAT------TTAAATGGCGATTGCATACCTCACTGTTCCAGTTTATGCCAGAACGGCATGTGCGTTTCTCCAGGTGTTTGCCAGTGTGAGCAAGATTTTATTTTCGATGTGCGAACTGGAAATTGTGTGCTG----A------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAT------AAGATCAAGTGTGTTCCAATTTGCAAAGGTGGATGTGAGAACGGAATCTGTTCCGCTCCCGGAATATGTTCATGCAATGAGGGATATGCCCGTGCGGGTAACGAGACTTGTATTCCAACCTGTAAGA-AGGGATGTCAAAATGGATTATGTAAGTTGCCTGGGCAGTGTCAGTGTTTCGACGGGTTTAAAAAGTCG------GTCGATGGTGATTGCGAGCTCCACTGTCCCAGTTCATGTCAGAATGGCAAATGCATTTCTCCAGGTATTTGCAAGTGTGATGACGGCTTTATTTTTGATGGGCAAACTGGAAGCTGTTTACCT----G------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAT------GCGAGCAAGTGCGTGGCAATATGCGTAGGTGGATGTTATAATGGATTCTGTTCCTCTCCCGGGATGTGTTCATGCAATAAGGGATATGCCAGTGAGTCCAACAATAGTTGTATTCCAACCTGTAAAA-ACGGATGCCGAAATGGGTCATGTAAGATGCCTGGGCAGTGTCAGTGCTTCGATGGTTTTAAAATGACA------GTGGAAGGGGATTGCGTGCCCCACTGTCCAAGTCTATGTCAGAATGGCAAATGTGTTTCTCCAGGTGTTTGCAAGTGCGACGACGGCTTTGTATTCGCTGCGCAAACGGGAAGCTGTCTGCCT----G------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGT------GAGGAAAAGTGTGTCCCAGTTTGCACAGGTGGATGTGAGAATGGATTCTGTGCTTCTCCGGAAAAGTGTTCCTGCAACATCGGATACGAAATGAACAGTGTGAACAAGTGTGTTCCAGTTTGCTCGA-AAGGATGTGAAAATGGATTCTGTGCATCTCCTGAAAAGTGTTCCTGCTATGAAGGATATACCAAGGAC------ACAGAGAACAGTTGTGCACCAGTTTGCTCGAAAGGATGTAAGAACGGATTTTGTATTTCTCCGGAAGTTTGCAAGTGCAACGAGGGCTTTGTCTCTTCAGAAGAATCGGATACGTGCCTCCCT----G------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGT------GAGAACAGATGTGTTCCAGTTTGTACAGGTGAATGTAAGAACGGATTTTGTGCTTCGCCGGGAAAGTGTTCCTGCAATGAAGGATACAGCAAGGAAACGGAGAACAGTTGTGCACCAGTTTGCTCGA-AGGAATGTGAGAACGGATTTTGTTCTTCACCTGAAAAGTGTTCCTGCAATGAAGGATACATAATGGAT------AGTGAGAACAGATGTGTTCCAGTTTGTACAGGTGAATGTAAGAACGG---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGTGGTAGTGAGAACAGGTGTGTTCCAGTGTGCAGAGGTGGATGCAAGAACGGATTTTGTGCCTCTCCAGGAAAGTGTTCTTGTAATAAAGGATACAGCAAGGAATCGAATTCTACGTGCTCACCAGTTTGCACGA-AAGGATGCGAGAACGGCTTCTGTGTTTCTCCAGAGAAGTGTTTGTGCAATAACGGATTTGAAATGGAGAGTGGCAGTGGGAACAGGTGTGTTCCAGTGTGCACAGGTGGATGCGAGAACGGTTTCTGCGTTTCTCCAGGCGCTTGCAGTTGCAATGATGGTTTTTTTTGT-CCAAAGAAACGGGTAGTTGTCTGCTT----G------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACA------GGAAACAGTTGCAAACCAATTTGCTCAAAAGGATGTGAGAACGGATTCTGTGATGCACCAGAAAAGTGTTCCTGCAATGATGGATATGAAATGGACAGTGAAAACAGATGTTCTCCAGTTTGCTCAG-GTGGATGCAAGAACGGATTCTGCGTTGCCCCAGGAAAGTGTTCCTGTGATGAAGGATACAGCAAGGAA------ACAGGAAACAGTTGCAAACCAATTTGCTCAAAAGGATGTGAGAACGGATTTTGTGAAGCACCAGAAAAGTGTTCCTGCAATGATGGATATGAAATGGACGGTGAA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................GATGTGAGAACGGATTTTGTGAAG............................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GTGAAGCACCAGAAAAGTGTTCC...........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TGAGAACGGATTTTGTGAAGCACCAGA.....................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TACAGCAAGGAA------ACAGGAAACAGTTG........................................................................................................................................................................	26	11	0.82	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................TATGAAATGGACAGTGAAAACAGATGT.................................................................................................................................................................................................................................................................................	27	8	0.75	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TCAG-GTGGATGCAAGAACGGATTCTG..........................................................................................................................................................................................................................................	26	13	0.69	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................CTCAG-GTGGATGCAAGAACGGATT.............................................................................................................................................................................................................................................	24	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CCAATTTGCTCAAAAGGATGTGAG............................................................................................................................................	24	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................GCTCAAAAGGATGTGAGAACGG....................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGATGAAGGATACAGCAAG...............................................................................................................................................................................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSim2

ACA------GAAAACAGTTGTACACCAATCTGCTCCAGAGGATGTGAGAACGGATTCTGTGATGCCCCAGAAAAGTGTTCCTGCTATGATGGATATGCAATGGCCAGTGAAAACAGATGTTCTGCAGTTTGCTCAG-GTGGATGCAAGAATGGATTCTGTGTTGCCCCAGGAAAGTGTTCCTGTTATGAAGGATACAGCATGGAA------ACAGAAAACAGTTGTACACCAAATTGCTCCAGAGGATGTGAGAACGGATTCTGTGATGCCCCAGAAAAGTGCTCCTGCAATGATGGATATGCAATGGACAGTGGG---AACAGATGT-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................GAA------ACAGAAAACAGTTGTACACCA.................................................................................................................................................................	24	2	2.50	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TATGAAGGATACAGCATGGAA------ACAGAA................................................................................................................................................................................	27	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
................................................................CCCCAGAAAAGTGTTCCTG......................................................................................................................................................................................................................................................................................................................	19	3	1.33	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGGATATGCAATGGACAGTGGG---AACAGA....................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................TGCAATGATGGATATGCAATGGACAGTG...............................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................TTATGAAGGATACAGCATGGAA------ACAGAA................................................................................................................................................................................	28	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................................................................................................................AAAGTGTTCCTGTTATGAA...........................................................................................................................................................................................................	19	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TGTTATGAAGGATACAGCATGGAA------ACAGA.................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................AAGTGTTCCTGCTATGATGGA............................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................TGTGATGCCCCAGAAAAGTGTTCCTGCTA...................................................................................................................................................................................................................................................................................................................	29	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GAACGGATTCTGTGATGCCCCAGA.....................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TGAAGGATACAGCATGGAA------ACAGAAA...............................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................GAACGGATTCTGTGATGCCCCAGA..................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AGGATACAGCATGGAA------ACAGAAAACAGT..........................................................................................................................................................................	28	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................AGCATGGAA------ACAGAAAACAGTTGTA......................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

ACA------GAAAACAATTGTACACCAATCTGCTCCAGAGGATGTGAGAACGGATTCTGTGATGCCCCAGAAAAGTGCTCCTGCTATGATGGATATGCAATGGACAGTGAAAACAGATGTTCTCCAGTTTGCTCAG-GTGGATGCAAGAACGGTTTCTGTGATGCCCCAGGAAAGTGTTCCTGTGATGAAGGATACAGCATGGAA------ACAGAAAACAGATGTACACCAATCTGCTCCAGAGGATGTGAGAACGGATTCTGTGATGCCCCAGAAAAGTGCTCCTGCAATGATGGATATGCAATGGACAGTGAA-----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................TATGATGGATATGCAATGG..................................................................................................................................................................................................................................................................................................	19	5	0.40	2	0	0	2	0
..............................................................................................ATGCAATGGACAGTGAAAACAGATGTT................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0
............................TCTGCTCCAGAGGATGTGAGAA.......................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	1	0
.........................................................................................................................................................................................................................................TCTGCTCCAGAGGATGTGAGAA..........................................................................................................................................	22	3	0.33	1	0	0	1	0
.........................................................................................TGGATATGCAATGGACAGTGAA..........................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................TGGATATGCAATGGACAGTGAA-----------------------------------------------------------------------------	22	3	0.33	1	0	1	0	0
........................................................................................................................................................GTTTCTGTGATGCCCCAGGAAAGTGT.......................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	1
............................................................................................................................................................................AAGTGTTCCTGTGATGAAGG.........................................................................................................................................................................................................	20	9	0.22	2	0	1	1	0
............................................................................................................................................................................AAGTGTTCCTGTGATGAAG..........................................................................................................................................................................................................	19	9	0.11	1	0	0	1	0
..........................................................................................................................................................................................TGAAGGATACAGCATGGAA------A.....................................................................................................................................................................................	20	9	0.11	1	0	0	0	1
...................................................................................................................................................................................CCTGTGATGAAGGATACAGC..................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0
............................................................................................................................................................................................AAGGATACAGCATGGAA------ACAGAA................................................................................................................................................................................	23	9	0.11	1	0	0	0	1

droYak3

ACG------AATAACAGTTGTTCACCAATCTGCTCAAAAGAATGTGAGAACGGATTCTGCGCTGCTCCAGAACAGTGTTCCTGTAATGAAGGATACAGGATGGAAACGAATAACAGTTGTTCACCAATCTGCTCAA-CAGAATGTGAGAACGGATTCTGTGTTGCCCCAGAGGAGTGTTCTTGCTATGAAGGATACAGCAAGGAA------ACTGAAAATAGTTGTGCACCTATTTGTAAGGATGGGTGTGACAACGGGCATTGCGTATCTCCAAATGTTTGCAAGTGTAATGTCGGATTTTTATACCTGGCAGAATATAGAAGTTGTGGACTT----G------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................GAGGAGTGTTCTTGCTATGAA...........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
......................................................................................TGAAGGATACAGGATGGAAA...............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................ATACAGGATGGAAACGAATAACAGTT...................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
...............................................GAACGGATTCTGCGCTGG........................................................................................................................................................................................................................................................................................................................................	18	13	0.08	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................GATACAGGATGGAAACGAATAACAGT....................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................CAGGATGGAAACGAATAACAGT....................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................ATGGAAACGAATAACAGTT...................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AGT------GAAAACAGGTGTGTACCAATCTGCTCCAGAGTATGTGAAAACGGATTCTGTGTTGCCCCAGAGAAGTGTTCCTGTAATGAAGGATACCGGATGGAAACGAACAACAGTTGTTCCCCAATCTGCTCAA-GAGAATGTGAGAACGGATTTTGTGCTGCTCCAGAAGAGTGTTCCTGTAATGAGGGGTATAACATGGAC------AGTGAAAACAAGTGTGTACCAATCTGCTCAAGACGATGTGAGAACGGATTCTGTGAAGCTCCAGAAAAGTGTTCATGCAATGAGGGATATAAAATGGACAGTGAA---AACAGGTGTGTACCA-----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................................................................................................................GTGAAGCTCCAGAAAAGTGTTCA...........................................................................................................	23	3	0.33	1	0	0	0	0	0	1	0
.....................................................................................ATGAAGGATACCGGATGGA.................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	1	0
......................................................................................................................GTTCCCCAATCTGCTCAA-GAGAATGTGA......................................................................................................................................................................................................................................................	28	8	0.13	1	1	0	0	0	0	0	0
.......................................GTATGTGAAAACGGATTCTGT.............................................................................................................................................................................................................................................................................................................................................	21	17	0.12	2	0	0	0	0	1	1	0
.........................................................................................................................................................ATTTTGTGCTGCTCCAGAAGAGT.........................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	2	0	0
.......................................................................................................................................................GGATTTTGTGCTGCTCCAGAAGAGT.........................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	1	1	0
..........................................................................................................................................................................................................................................CTGCTCAAGACGATGTGA.............................................................................................................................................	18	20	0.10	2	0	0	0	0	0	2	0
..........................................................................................................................................................TTTTGTGCTGCTCCAGAAGAGT.........................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	1	1	0	0
........................................................................................................................................................GATTTTGTGCTGCTCCAGAAGAGT.........................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	2	0
................................................................................................................................................................................GTTCCTGTAATGAGGGGT.......................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	2	0
............................................................................................................................CAATCTGCTCAA-GAGAATGTGAGA....................................................................................................................................................................................................................................................	24	11	0.09	1	0	0	0	0	0	1	0
........................................................CTGTGTTGCCCCAGAGAAGT.............................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	1	0
........................................................CTGTGTTGCCCCAGAGAAGTGTTCC........................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	1	0
...............................................AAACGGATTCTGTGTTGCCCCAGAG.................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	1	0
..............................................................................................................................ATCTGCTCAA-GAGAATGTGAGA....................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	1	0	0	0	0
..................TGTGTACCAATCTGCTCCAGA..................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	1	0	0	0	0	0	0
............................................TGAAAACGGATTCTGTGT...........................................................................................................................................................................................................................................................................................................................................	18	16	0.06	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................ATAAAATGGACAGTGAA---AACA......................................................................	21	20	0.05	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................AGTGAAAACAAGTGTGTACC..................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................TGTGTACCAATCTGCTCA........................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................AATCTGCTCAAGACGATGTGA.............................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................TGTACCAATCTGCTCAAGACGATGTGA.............................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................TTTGTGCTGCTCCAGAAGAGT.........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
............................................................................................................................................................................GAGTGTTCCTGTAATGAGGGGT.......................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0
...........................................................................................................................................................TTTGTGCTGCTCCAGAAGA...........................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
.................................................................................................................................................GAGAACGGATTTTGTGCT......................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................TTTGTGCTGCTCCAGAAGAGTG........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................ATCTGCTCAAGACGATGTGA.............................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................AAGACGATGTGAGAACGGA......................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................AACAAGTGTGTACCAATCTGC...........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
......................................................................................................................................................CGGATTTTGTGCTGCTCCAGAAGAG..........................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................GTGAAAACAAGTGTGTACCAATCTGC...........................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0

dp5

AGT------GAGAACAGATGTGCTCCCATTTGTGAGGACGGATGTGAGAACGGATTCTGCGAGTCTCCCGGAAGGTGTTCCTGCAACGAAGGATACGCAAAGGAGAGTGAGAACAGATGTGTTCCCATCTGCGAGG-ACGGATGTGAGAATGGATTCTGCGTGGCGCCTGGGCTGTGCTCGTGTATCGAAGGATACATCAGGATC------AGAGACGGCACCTGCAAGCCCTATTGCCCAAATGGATGTTTCAATGGCTCCTGCGTCGCACCCAATGTTTGTAATTGCGAGAATGGTTCTGTCTATGAGTTCTCGTCAGGGATGTGTGTCCCT----G------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................CTGCGAGG-ACGGATGTGAGAATGG................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GCTGTGCTCGTGTATCGAAG..........................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................GATACGCAAAGGAGAGTGAGAA........................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................GGAGAGTGAGAACAGATGTGT...............................................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..................................AGGACGGATGTGAGAACGG....................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0
.....................................ACGGATGTGAGAACGGATT.................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0	0	0	0	0
............................TTTGTGAGGACGGATGTGAG.........................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........GAGAACAGATGTGCTCCCA.............................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..........................................................................GTGTTCCTGCAACGAAGGATA..........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................CGGATTCTGCGAGTCTCCC....................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0

droPer2

AGT------GAGAACAGATGTGCTCCCATTTGTGAGGGCGGATGTGAGAACGGATTCTGCGAGTCTCCCGGAAAGTGTTCCTGCAACGAAGGATACGCAATGGAGAGTGAGAACAGATGTGCTCCCATCTGCGAGGGACGGATGTGAGAACGGATTCTGCGAGTCTCCCGGAAGATGTTCTTGCAACGAAGGATACGCAAAGGAG------AGTGAGAACAGATGTGCCCCCATTTGTGAGGGCGGATGTAAAAACGGATTCTGCGAGTCTCCCGGAAAGTGTTCCTGCAACGAAGGATACACAAAGGAGAGTGAG---AACAGATGTGCTCCTATTTGTGAGGATGGATGTGAGAACGGATTCTGCGAGTCTCCCGGAAAGTGTTCCTGCAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................GGATACACAAAGGAGAGTGAG---AAC.......................................................................	24	1	1.00	1	0	0	0	1	0	0
................................TGAGGGCGGATGTGAGAACGGAT..................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	1

droWil2

ACT------GAGAACAAGTGTGCCCCTGTCTGCGAAGAAGGATGTGAGAATGGATTCTGCGAGTCACCGGGAATCTGTTCCTGTTTTGAGGGTTACAAGAAGGAAACTGAGAATAAGTGTGCCCCTGTCTGCGAAG-AAGGATGTGAGAATGGATTCTGTGAGTCACCCGGAAAGTGTTCCTGTCTTGAGGGTTATAAAAAAGAA------ACCGAAAACAAGTGTGCCCCTGTCTGCGAAGAAGGATGTGAGAATGGATTCTGTGAGTCACCCGGAAAGTGTTCATGCAACGAGGGCTACAAGCAGGAAACTGAG---AACAAGTGTGCCCCTGTCTG------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................................................................................................AGGGCTACAAGCAGGAAACT................................................................................	20	4	0.75	3	3	0	0	0	0
..................................................................................................................................................................................................................................................................................................ACGAGGGCTACAAGCAGGA....................................................................................	19	4	0.25	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................AGGGCTACAAGCAGGAAACTG...............................................................................	21	4	0.25	1	1	0	0	0	0
.......................................................TCTGCGAGTCACCGGGAATCTGG...........................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	1	0	0	0	0
................................................................................CTGTTTTGAGGGTTACAAGA.....................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	1	0	0
......................................AGGATGTGAGAATGGATTCTGCGAGTC........................................................................................................................................................................................................................................................................................................................................	27	5	0.20	1	1	0	0	0	0
...........................................GTGAGAATGGATTCTGCGAGTC........................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	1	0	0	0	0
.......................................................TCTGCGAGTCACCGGGAATCT.............................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	1	0	0	0	0
.............................................................................................................................................................................AGTGTTCCTGTCTTGAGGGT........................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	1
..............................................................................................................................................................................GTGTTCCTGTCTTGAGGGT........................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	1
.................................GAAGAAGGATGTGAGAAT......................................................................................................................................................................................................................................................................................................................................................	18	13	0.08	1	0	1	0	0	0
....................................................................................................................................GAAG-AAGGATGTGAGAAT..................................................................................................................................................................................................................................................	18	13	0.08	1	0	1	0	0	0
..............................................................................................................................................................................................................................................GAAGAAGGATGTGAGAAT.........................................................................................................................................	18	13	0.08	1	0	1	0	0	0

droVir3

AGT------GAGAACAGATGTGCACCTGTGTGCAAGGACGGCTGTGAGAACGGATTCTGTAGTGCGCCTGGGGAATGTACTTGTCATCAAGGATATTCTATAGTGAGTGCGTATAGTTGTGCTCCAGTTTGCAAGG-ACGGATGTGAGAACGGATATTGCAGTGCGCCAGGGGAATGCACTTGTGACGAAGGCTACAGTAAAGTC------AGTGAGAACAGATGTGCACCTGTGTGCAAGGAGGGATGTGAGAACGGATATTGCAGTGCGCCAGGTGAATGCACTTGTGACGAAGGCT----------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................TTGCAAGG-ACGGATGTGAGAACGGA...............................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TTGCAAGG-ACGGATGTGAGAACGGAT..............................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TGCACCTGTGTGCAAGGAGGGATGTGA.............................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GATGTGCACCTGTGTGCAAGGACGGCT..............................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TGCAAGG-ACGGATGTGAGAACGGAT..............................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GTACTTGTCATCAAGGATATT........................................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GCCAGGGGAATGCACTTGTGA...............................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GTGCGCCTGGGGAATGTACT........................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CCTGTGTGCAAGGAGGGA..................................................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GAATGCACTTGTGACGAAGGCTAC.....................................................................................................................................................................................................	24	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TCATCAAGGATATTCTATAGTGAGTGC...........................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GTGAGAACAGATGTGCACCTGTGTGC...........................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..T------GAGAACAGATGTGCACCTGTGTGC........................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGACGAAGGCTACAGTAAAGTC------AGTGA.................................................................................................................................................................................	27	5	0.20	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AGTGAGAACAGATGTGCACCTGTGTG............................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GT------GAGAACAGATGTGCACCTGTGTGC........................................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGAGAACAGATGTGCACCTGTGTGC...........................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TGCACTTGTGACGAAGGCTACAGTAAAG..............................................................................................................................................................................................	28	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGT------GAGAACAGATGTGCACCTGTGTG.........................................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TC------AGTGAGAACAGATGTGCACCTGTG..............................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................C------AGTGAGAACAGATGTGCA....................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................AAAGTC------AGTGAGAACAGATGTGCACC..................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TTGTGACGAAGGCTACAG...................................................................................................................................................................................................	18	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AGTGCGCCAGGGGAATGC.......................................................................................................................................................................................................................	18	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TACAGTAAAGTC------AGTGAGAACAGATG........................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TACAGTAAAGTC------AGTGAGAACAGATGT.......................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GAATGCACTTGTGACGAAGGCTA......................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................AATGCACTTGTGACGAAGGC........................................................................................................................................................................................................	20	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................ATGCACTTGTGACGAAGGCT----------------------------------------------------------------------------------------------	20	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................AATGCACTTGTGACGAAGGC...............................................................................................	20	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATGCACTTGTGACGAAGGCT.......................................................................................................................................................................................................	20	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AGTC------AGTGAGAACAGATG........................................................................................................................................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GAATGCACTTGTGACGAA..................................................................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GAATGCACTTGTGACGAA...........................................................................................................................................................................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCT------GAGATTAGATGTGCTCCAGAATGTAAAGATGGATGCGAGAACGGTTTCTGTAGTGCTCCAGGAAAATGCACCTGTAACGAAGGATATTCTCCAGTCACTGAGAATAGATGTGCTCCCGAATGTAAAG-ATGGATGCGAGAACGGATTCTGTAGTGCTCCAGGGAAATGTACCTGTAACGAAGGATATTTGCCTTTG------ACTGAAAGCAGATGTGCTCCAGAATGTAAAGATGGATGCGAGAACGGTTTCTGTAGTGCACCAGGGCAATGCAGCTGTAATGAAGGATTTTCT-----------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................CCTTTG------ACTGAAAGCAGATGT.......................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1
...............................................................................................................AATAGATGTGCTCCCGAATGT.....................................................................................................................................................................................................................................................................	21	4	0.25	1	1	0	0	0	0	0
.................................................................................................CTCCAGTCACTGAGAATAGATGTGCTC.............................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................CCAGAATGTAAAGATGGATGCGA.............................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
.........................CAGAATGTAAAGATGGATGCGAGAAC......................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
........................CCAGAATGTAAAGATGGATGCGA..........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................CAGAATGTAAAGATGGATGCGAGAAC.........................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0

droGri2

ACA------GAGAATAGTTGTTCACCAGTATGTAAAGATGGTTGTGAGAATGGATTTTGCTCTGCTCCTGGAGAATGTTCCTGCAACGATGGATATTCTAAAGTGAATGAGAACAGCTGTGCTCCAGTCTGTAACA-ATGGATGTCAGAACGGATTATGTACTGCTCCTGAGGAATGCACCTGTAACGATGGCTATTCTAAAGTA------ACAGAGAACAGTTGTTCACCAGTATGTAAAGATGGTTGTGAGAATGGATTTTGCTCTGCTCCTGGAGAATGTTCCTGTAACGATGGATATTCTAAAGTGAATGAG---AACAGCTGTGCTCCA----G------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................................................GCTCCTGAGGAATGCACCTGTA................................................................................................................................................................................................................	22	3	0.33	1	1	0
...........................................................CTCTGCTCCTGGAGAATGTT..........................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	1	0
.......................................................................................................................................................................................................AAAGTA------ACAGAGAACAGTTG........................................................................................................................................................................	20	4	0.25	1	0	1
........................................................................................................................................................................................................................................................................CTCTGCTCCTGGAGAATGTT.............................................................................................................	20	4	0.25	1	1	0
..............................................................................................................................................................................................................................................AAAGATGGTTGTGAGAATGGATTTT..................................................................................................................................	25	5	0.20	1	1	0
.................................AAAGATGGTTGTGAGAATGGATTTT...............................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	1	0
............................................................................................................................................................................GAATGCACCTGTAACGATG..........................................................................................................................................................................................................	19	6	0.17	1	1	0
......................................................................................................................................................................................................................GAGAACAGTTGTTCACCAGTA..............................................................................................................................................................	21	10	0.10	1	1	0
...........................................................................................................TGAGAACAGCTGTGCTCCAGTCT.......................................................................................................................................................................................................................................................................	23	12	0.08	1	1	0
...................................................................................................AAAGTGAATGAGAACAGCT...................................................................................................................................................................................................................................................................................	19	13	0.08	1	1	0
....................................................................................................................................AACA-ATGGATGTCAGAACGGA...............................................................................................................................................................................................................................................	21	13	0.08	1	1	0
...................................................................................................AAAGTGAATGAGAACAGCTGTGCT..............................................................................................................................................................................................................................................................................	24	13	0.08	1	1	0
................................................................................................................................................................................................................................................................................................................AAAGTGAATGAG---AACAGCT...................................................................	19	13	0.08	1	1	0
................................................................................................................................................................................................................................................................................................................AAAGTGAATGAG---AACAGCTGTGCT..............................................................	24	13	0.08	1	1	0
.......................................................................................................................................A-ATGGATGTCAGAACGGA...............................................................................................................................................................................................................................................	18	14	0.07	1	1	0
.....................................................................................................................................................ACGGATTATGTACTGCTCC.................................................................................................................................................................................................................................	19	15	0.07	1	1	0
............................................................................................................................................GATGTCAGAACGGATTATGTA........................................................................................................................................................................................................................................	21	15	0.07	1	0	1
.........................................................................................................................................ATGGATGTCAGAACGGATTATG..........................................................................................................................................................................................................................................	22	16	0.06	1	1	0
............................................................................................................................................GATGTCAGAACGGATTATGT.........................................................................................................................................................................................................................................	20	16	0.06	1	0	1

dan_419

scaffold_12911:3843654-3843875 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads