ID:

dan_415

 Coordinate:

scaffold_12911:3533172-3533322 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_7516:2]; CDS [Dana\GF22980-cds]; intron [Dana\GF22980-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATTAATCAAGCAGAACATTATATATTATCGTTTAAAACTGACCAACAGAAGGAGAATAAAATACACGATGCAAATAAAAAACAAAATCAGTTCTGGAACACAAACTTGAGATTCTTTTTCTTTAAATCTATGTGGCTTTTAGAACAATAATTTTAATTAATAAATTAACTTAAATAAATTTAAAATTTATTTCTCTACAGTGGCTACTTCGGAGCTATCCCAACGGCTGTTCGGCTCCTCCTCCACCTTC
**************************************************.(((((...........(((................))).(((((((((((((.....((((.......))))........))))..)))))))))..((((((........)))))).....((((((((...)))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V106
head
.....................................................................................................................................................................................................................AGCTATCCCAACGGCTGTT................... 19 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................ATGTGGCTACTTCGGAGCTATCCCAAC.......................... 27 2 1 1.00 1 1 0 0
................................................................................................................................................................................AAATTTAGAATTTATTTATCTACC................................................... 24 3 3 0.33 1 1 0 0
............................................................AATCCACGATGCAGATAACA........................................................................................................................................................................... 20 3 7 0.14 1 1 0 0
.....................................................................................................................................................AATTTTAATTAATAAAATAACC................................................................................ 22 2 9 0.11 1 1 0 0
..................................................................................................................................................................................................................................GCTGTTCGGCTCTTTCGCC...... 19 3 20 0.05 1 0 0 1
..................................................................................................AAACAGACGTGAGATTCTT...................................................................................................................................... 19 3 20 0.05 1 0 1 0

Anti-sense strand reads

ATAATTAGTTCGTCTTGTAATATATAATAGCAAATTTTGACTGGTTGTCTTCCTCTTATTTTATGTGCTACGTTTATTTTTTGTTTTAGTCAAGACCTTGTGTTTGAACTCTAAGAAAAAGAAATTTAGATACACCGAAAATCTTGTTATTAAAATTAATTATTTAATTGAATTTATTTAAATTTTAAATAAAGAGATGTCACCGATGAAGCCTCGATAGGGTTGCCGACAAGCCGAGGAGGAGGTGGAAG
**************************************************.(((((...........(((................))).(((((((((((((.....((((.......))))........))))..)))))))))..((((((........)))))).....((((((((...)))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V039
embryo
 M058
embryo
 M044
female body
..................................................................................................................................................................................................................................CGCCAAGGCGAGGAGGATGTG.... 21 3 1 1.00 1 1 0 0 0
...............................................TCTTACTCGTATTTTATGTGCT...................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0
................................................................................................................................................................................................................................GCCGACAAGGCGAGAAGGAGGC..... 22 3 2 0.50 1 1 0 0 0
........................................................................TTTATTTTTTGATGTAGTAAAGA............................................................................................................................................................ 23 3 4 0.25 1 0 1 0 0
......................................................................CGTTTATTTTTTGATGTAGTAA............................................................................................................................................................... 22 3 8 0.13 1 0 0 1 0
.......................................................................................................ATGTACTATAAGAAAAAGAAAT.............................................................................................................................. 22 3 14 0.07 1 0 0 0 1
...................................................................................................TTGTTTGAACACTAAGAAA..................................................................................................................................... 19 2 19 0.05 1 1 0 0 0
....................................................................................................................................................................................................................................CCAAGGCGAGCAGGAGGTG.... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12911:3533122-3533372 - dan_415 TATTAATCAA------------------------------------------------------GCAGAACATT-------------------------AT-ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGGAGAA--TAAAA---TACACGATG--------------------CAAATAA-------------------A--AAACA-AAATCAGTTCTGGAACACAAACTTGA---GATTC--T--TTTTC-TTTAAAT----CT-----ATGTGGC----------------------------------------------------------TTTTAGAACA-ATAATTTT--------------------------------------------------------------AA--------------------------------------------------------------------------TTAATAAA-----------------------------------------------TTAACT-TAAAT----AAATTTAA----AA--TTTAT--TTCTCTACAGT-----------------------------GGCTACTTCGGAGCTATCCCAACGGCTGTTCGGCTCCTCCTCCACCTTC
droBip1 scf7180000396640:396442-396726 - TATTAATCAA------------------------------------------------------GCAGAACATT-------------------------AT-ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAGGAGAAA--TAAAA---TACACAATG--------------------CAAATAAAAATAAAAATAAAAAACTTC---AACA-AAATCTGTTCTGGAACACAAACCT-----GAT-G--T--TTTTATTTTACAC----CT--------TA---------------------------------------------------------------------------------------------A--ACTTGAAACAATTATTTTTAGTTTCAGAAAC--TG---ATAATTAA---------------------------------------------------AT----------------AT---------------------------------------------------------------CC-TTTATGTG-----TTG-------TAT-TTTA--TTTCTGCAGTTA-----------CCACAACC------CTGGCTACTTCGGAGCTTTCCCAGCGTCTGTTCGGCTCATCTTCCACCTTC
droKik1 scf7180000302810:818421-818584 + TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------ATTATA------TTATATATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAA---TAAAAAGAAACACAATTGAAAAAAAAAAAACAAAATGCAAAAAACACT--------------TG---AACG-AAATCAGTTCTGAAACACAAAATA-----GATTG--G--TTTTA-TTTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--ATC-TA------------------------------------------------------------------------------------------TG
droFic1 scf7180000454114:244463-244773 + TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------AT-ATA------TT----ATTGTTTAAAACTGAC--------------------------------------CAACAGAGAAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACC--------------CA--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTC--C--TTTTA-TTTGTTT----TG----------ATTTC-GG-------------G--CC----------------------------------TT-----------TTGGGGAA------TCCCC-CTTGAAA--------------------------GCGGT----TTG--------------------------------------------TTGAAAAT---------------------AA-----------------------------TTAATAATAATGTTTTTATTTAAAATCCAAATGACTCTCTAT----CCAAATG-------AAC-TCTC--CCTTTGCAGTAA-----------CTCCAACT------CAGGCCACTCCGGAGCTCTCCCAGCGGCTCTTCGGTTCATCCTCGACGACC
droEle1 scf7180000491194:1601685-1601896 + TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------AT-ATA------TT--ATATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---CACACAATG--------------------CAAAAAACACC--------------TA--AAACA-AAATCAGTTCTGAACCACAAAATT-----GATTG--T--TTTTTATTTATGT----TT--------CAATGTC-GA-------------G--GT----------------------------------AC-----------TTGGTTAAATTTTT-----------------------------------GGTAC--GA---GTTTTTAA---------------------------------------------------AT----------------AA---------------------------------------------------------------CT-AAAATTTGCAGATTTAA----CA--TT------TAATT-----------------------------------------------------------------------------------
droRho1 scf7180000779322:138655-138859 - TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------AT-ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CA--ATAGA-AATTCAGTTCTGAAACACAAAATT-----GATTG--T--TTTTA-TTTATAT----TT--------ATAT--TTGT-------------GGGTT------------------------------------TT---------TTGGTTAA-TTTTG-----------------------------------GGAAC-----------------TT--------------------------------------------------------AA---AAT-AA-----------------------AAATTATT----------------------------------------------GGCTTA----AAAATTTCA--ATTT-T----------------------------------------------------------------------------------A
droBia1 scf7180000302035:221979-222249 + TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------AT-ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACA-AAGGAAAA--TAAAA---TACACCATG--------------------CAAA-AACACT--------------CG--AAACA-ATATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTTA-TTTTTTG--TGAG----------GG----------------------------------------------------------AATTGGGACTTGTATTTTT--------------------------------------------------------------AA------GTGGTAT------CAT-AAGA---------------------------------------T-CA--------TAAT-CTAATTA---TAA---------------------------------------------------------TCCA--AACTTGA--ATCTTTTCAGTGA-----------CCCCAACT------CAGGCCACTCCTGAGCTCTCCCAGCGGCTGTTCGGCTCCTCCTCGACGACA
droTak1 scf7180000415712:643835-644107 + TATTAATCAA------------------------------------------------------GCTGAACATTT------------------------AT-ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAGAAA--TAAAA---TACACAATG--------------------CAAA-AACACT--------------CGAAAAAGA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TATTT-TT-------AATG----------GG----------------------------------------------------------TTTTGGGA-------------------TCCCTAA--ACCA-----------------------------------------GA------GTGATATTCTTTCTAA-AAAA---------------------------------------T-CA--------A--------------TAT-------------------------------------TT-AAT--------TTTTTA----AA--ATCC-TCCTAATTTCAGTTA-----------CTCCAACT------CAGGCTACTCCCGAACTCTCCCAGCGGCTTTTTGGCTCCTCTTCGACTACA
droEug1 scf7180000409488:346617-346929 - TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------AT-ATA------TT----AACGTTTA--ACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CA--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTTA-TTTCTTC-----G-------AATATT-TTGT-------------GGG------------------------------------TTTTTG-----------GTAG------TTC---CTTTCAA--------------------------GCTGTGCTACTT-------------------------------------------TTTAATCGGTAAATTACTACGTA---AATTTTTAA-CTAACGACTTGTGTTAA--TAA---------------------------------------------------ACTTTA----AA--TTTCC--ATCTTTGCAGTCA-----------CTCCAACT------CAGGCCACCCCGGAGCTATCCCAGCGGCTCTTCGGCTCCTCTTCGACGACG
dm3 chr3R:27558409-27558703 + TATTAATCAA------------------------------------------------------GCAGATCCTTT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CA--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTAA-TTCATTTG-TTTG----------GG----------------------------------------------------------AT-TGGG----------CAAA------TTC---CAGTCAA--------------------------G--GAGCTGCTTTCCTATTT---------------------------AAACTGTCTTTAATGGGT--------CCGGA---AAT----------------------A---TAA-------------------------------------TT-CAT--------ATTTTA----AA--TATC--TTTGATTACAGTTA-----------CTCCTACT------AAGGCCACTCCAGAGCTCTCCCAGCGGCTCTTCGGCTCCTCTTCGACGACA
droSim2 3r:26834056-26834348 + dsi_12199 TATTAATCAA------------------------------------------------------GCAGATCCTTT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACATT--------------CA--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTAA-TTCATTTG-TTTG----------GG----------------------------------------------------------AT-TGGG----------CACC------TTC---CAGGCAA--------------------------G--GA---ACTATGCTATTT---------------------------AAACTGCCTTTAATGGGT--------CCGGA---AAT----------------------AC--TAA-------------------------------------CT-CAT--------ATTTTA----AA--TATC--TCTAATTGCAGCTA-----------CTCCTACT------AAGGCCACTCCAGAGCTCTCCCAGCGGCTCTTCGGCTCCTCTTCGACGACA
droSec2 scaffold_31:213039-213331 + TATTAATCAA------------------------------------------------------GCAGATCCTTT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CA--AAACA-AAATCAGTTCTGAAACGCAAAATT-----GATTG--T--TTTAA-TTCATTTG-TTTG----------GG----------------------------------------------------------AT-TGGG----------CACA------TTC---CAGGCAA--------------------------G--GA---ACTATGCTATTT---------------------------AAAGTGCCTTTAATGGGT--------CCGGA---AAT----------------------AT--TAA-------------------------------------CT-CAT--------ATTTTA----AA--TATC--TCTAATTGCAGCTA-----------CTCCTACT------AAGGCCACTCCAGAGCTCTCCCAGCGGCTCTTCGGCTCCTCTTCGACGACA
droYak3 3R:28492975-28493285 + dya_1187 TATTAATCAA------------------------------------------------------GCAGATCATTT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CG--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTAA-TTCAATT--TTTG----------GG----------------------------------------------------------ATCTGGGA----------------------------------------------------------T--GA---ACAATTGAACTTAACACAT----------ATGAATGAATAAATTGTGTTAATTGGGT--------CTGGACTAAAT-AA---TATAA-----------------------------------------------CAAAATAACT-CATAT----AC--ATGA----AA--CATC--T-TAATTGCAGTTA-----------CTCCAACC------AAGGCCACTCCAGAGCTCTCCCAGCGGCTCTTCGGCTCCTCTTCGACGACC
droEre2 scaffold_4820:417366-417591 - TATTAATCAA------------------------------------------------------GCAGATCATTT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CG--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTAA-TTCCTTT--TTTG----------GG----------------------------------------------------------AA-TGGG-----------AAA------TTC---CGCTCAA--------------------------G--CT---ACTTTTGTATTTAATACAGCTT------CATCAAGA----------ATTTAAT---------------------------------------TGAATTAT--TAA-------------------------------------AC-GTT--------AAATTA----AG--TTT---TC----T----------------------------------------------------------------------------------A
dp5 2:16546457-16546858 - TATTATTCTGATATATATTTATAACTAATTTTTGTTATAGTAGGAAGGAGAACTATCAAGTAAAACAGAACTTTTT-----------------------ATAATAATACTATT----ATCGCTTA--ACTGCTAAACAAACAACAAACAAACAAACAACAACAACAAACAAAAACAGAAGAGAAA--TAAAA---TACACGATG--------------------CAAAAA-AACA--------------CA--AAACAAAAATCAGTTCTGAACCA-AAAATT-----GATTG--T--TTTTT-TT-------ATTG----------AATTTAGTTATAAAAAAAACAGGATTTTCCCCCACAAC-AAAACATTTAGCATAATTGGCATCTAAAAAA-ATAATTCG--------------------------------------------AAA--------------------------------------------------------------------------------------------------------TT--AA-------------------------------------------------------TT---TTCA--AAC-TATA--TTTTTACAGTCA-----------CAGCCGCCCAGTTGCAGGCCACACCGGAACTCTCGCAGCGGCTCTTTGGGTCCACCTCAACGCTG
droPer2 scaffold_0:3850062-3850462 + TATTATTCTGATATATATTTATAACTAATTTTTGTTATAGTAGGAAGGAGAACTATCAAGTAAAACAGAACTTTTT-----------------------ATAATAATACTATT----ATCGCTTA--ACTGCTAAACAAACAACAAACAAACAAACAACAACAACAAACAAAAACAGAAGAGAAA--TAAAA---TACACGATG--------------------CAAAAAACAC----------------A--AAACAAAAATCAGTTCTGAACCA-AAAATT-----GATTG--T--TTTTT-TTTTT----ATTG----------AATTTAGTTATAA----AACAGGATTTTCCCCCACAAAAAAAACATTTAGCATAATTGGCATCTAAAAAA-ATAATTCA--------------------------------------------AAA--------------------------------------------------------------------------------------------------------TT--AA-------------------------------------------------------TT---TTCA--AAC-TATA--TTTTTACAGTCA-----------CAGCCGCCCAGTCGCAGGCCACACCGGAACTCTCGCAGCGGCTCTTTGGGTCCACCTCAACGCTG
droWil2 scf2_1100000004902:9526523-9526803 + TATTAATCAATCATCT-TATCTAACTAATTTTTGTTATAATCT---------------------------ATTTTTATTA--------------------T-GGAAT----------A-CGATT-AAACCGAA--------------------------------------AAAGAGAAGAGAGAAAT------------------------------------AAAAATACACA--------------CG--AAAAA-AAAACACTTTTGAAAAAGAAAACA-----AATTG--AAGTTTAA-CTTATTTTTAATCAAACTCT-------------------------------------------------------------------GGG----------------------------------------------------------------------------------------------------------------GCTTTAAAAATT--------T------------------------------------------TTGATTTATATA----------------------TT-TTT--------TTTTTA----AA--TACC--AATAATAATAATATATGTATGCTCTTTGATCTT------ACAGCCACACCAGAATTATCACAACGACTTTTTGGCTCG------------
droVir3 scaffold_13047:9391917-9391961 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACACCCGAGCTCTCGCAGCGACTTTTCGGCACGTCCA---CGCAT
droMoj3 scaffold_6540:11973731-11973931 - TATTATTCAT-------TAAAAAAATACATTTTGTTATATT---------------------------------TTATTACGAAATACGAAAAATGATTATTATTA-----TTATATATCGATTA--ATTGACA-------------------------------------AATGTGAAGAGAAA--TAAAA---TACACA-----------------------CACACAACAAC--------------AA--CAACT-A-AACAGTTCTGTAAAAGAAA-CA-AATTGTTTGCGT--T-TTA-TTTTT-----------------------AGT----------------------------------------------------TTTTA----------------------------------------------------------AAAT--TA---ATATTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------AT--T-TA--------T-----------------------------------------------------------------------------------
droGri2 scaffold_14906:2313235-2313282 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGACGCCCGAGCTGTCGCAGCGACTCTTTGGCTGCTCAGCGGCAAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TATTAATCAA------------------------------------------------------GCAGAACATT-------------------------AT-ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGGAGAA--TAAAA---TACACGATG--------------------CAAATAA-------------------A--AAACA-AAATCAGTTCTGGAACACAAACTTGA---GATTC--T--TTTTC-TTTAAAT----CT-----ATGTGGC----------------------------------------------------------TTTTAGAACA-ATAATTTT--------------------------------------------------------------AA--------------------------------------------------------------------------TTAATAAA-----------------------------------------------TTAACT-TAAAT----AAATTTAA----AA--TTTAT--TTCTCTACAGT-----------------------------GGCTACTTCGGAGCTATCCCAACGGCTGTTCGGCTCCTCCTCCACCTTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATCCCAACGGCTGTT...................1911.001010000
droBip1
TATTAATCAA------------------------------------------------------GCAGAACATT-------------------------AT-ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAGGAGAAA--TAAAA---TACACAATG--------------------CAAATAAAAATAAAAATAAAAAACTTC---AACA-AAATCTGTTCTGGAACACAAACCT-----GAT-G--T--TTTTATTTTACAC----CT--------TA---------------------------------------------------------------------------------------------A--ACTTGAAACAATTATTTTTAGTTTCAGAAAC--TG---ATAATTAA---------------------------------------------------AT----------------AT---------------------------------------------------------------CC-TTTATGTG-----TTG-------TAT-TTTA--TTTCTGCAGTTA-----------CCACAACC------CTGGCTACTTCGGAGCTTTCCCAGCGTCTGTTCGGCTCATCTTCCACCTTCSizeHit CountTotal NormTotal
No Reads
droKik1
TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------ATTATA------TTATATATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAA---TAAAAAGAAACACAATTGAAAAAAAAAAAACAAAATGCAAAAAACACT--------------TG---AACG-AAATCAGTTCTGAAACACAAAATA-----GATTG--G--TTTTA-TTTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--ATC-TA------------------------------------------------------------------------------------------TGSizeHit CountTotal NormTotal
No Reads
droFic1
TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------AT-ATA------TT----ATTGTTTAAAACTGAC--------------------------------------CAACAGAGAAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACC--------------CA--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTC--C--TTTTA-TTTGTTT----TG----------ATTTC-GG-------------G--CC----------------------------------TT-----------TTGGGGAA------TCCCC-CTTGAAA--------------------------GCGGT----TTG--------------------------------------------TTGAAAAT---------------------AA-----------------------------TTAATAATAATGTTTTTATTTAAAATCCAAATGACTCTCTAT----CCAAATG-------AAC-TCTC--CCTTTGCAGTAA-----------CTCCAACT------CAGGCCACTCCGGAGCTCTCCCAGCGGCTCTTCGGTTCATCCTCGACGACCSizeHit CountTotal NormTotal
No Reads
droEle1
TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------AT-ATA------TT--ATATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---CACACAATG--------------------CAAAAAACACC--------------TA--AAACA-AAATCAGTTCTGAACCACAAAATT-----GATTG--T--TTTTTATTTATGT----TT--------CAATGTC-GA-------------G--GT----------------------------------AC-----------TTGGTTAAATTTTT-----------------------------------GGTAC--GA---GTTTTTAA---------------------------------------------------AT----------------AA---------------------------------------------------------------CT-AAAATTTGCAGATTTAA----CA--TT------TAATT-----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------AT-ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CA--ATAGA-AATTCAGTTCTGAAACACAAAATT-----GATTG--T--TTTTA-TTTATAT----TT--------ATAT--TTGT-------------GGGTT------------------------------------TT---------TTGGTTAA-TTTTG-----------------------------------GGAAC-----------------TT--------------------------------------------------------AA---AAT-AA-----------------------AAATTATT----------------------------------------------GGCTTA----AAAATTTCA--ATTT-T----------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------AT-ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACA-AAGGAAAA--TAAAA---TACACCATG--------------------CAAA-AACACT--------------CG--AAACA-ATATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTTA-TTTTTTG--TGAG----------GG----------------------------------------------------------AATTGGGACTTGTATTTTT--------------------------------------------------------------AA------GTGGTAT------CAT-AAGA---------------------------------------T-CA--------TAAT-CTAATTA---TAA---------------------------------------------------------TCCA--AACTTGA--ATCTTTTCAGTGA-----------CCCCAACT------CAGGCCACTCCTGAGCTCTCCCAGCGGCTGTTCGGCTCCTCCTCGACGACASizeHit CountTotal NormTotal
No Reads
droTak1
TATTAATCAA------------------------------------------------------GCTGAACATTT------------------------AT-ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAGAAA--TAAAA---TACACAATG--------------------CAAA-AACACT--------------CGAAAAAGA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TATTT-TT-------AATG----------GG----------------------------------------------------------TTTTGGGA-------------------TCCCTAA--ACCA-----------------------------------------GA------GTGATATTCTTTCTAA-AAAA---------------------------------------T-CA--------A--------------TAT-------------------------------------TT-AAT--------TTTTTA----AA--ATCC-TCCTAATTTCAGTTA-----------CTCCAACT------CAGGCTACTCCCGAACTCTCCCAGCGGCTTTTTGGCTCCTCTTCGACTACASizeHit CountTotal NormTotal
No Reads
droEug1
TATTAATCAA------------------------------------------------------GCAGAACATTT------------------------AT-ATA------TT----AACGTTTA--ACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CA--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTTA-TTTCTTC-----G-------AATATT-TTGT-------------GGG------------------------------------TTTTTG-----------GTAG------TTC---CTTTCAA--------------------------GCTGTGCTACTT-------------------------------------------TTTAATCGGTAAATTACTACGTA---AATTTTTAA-CTAACGACTTGTGTTAA--TAA---------------------------------------------------ACTTTA----AA--TTTCC--ATCTTTGCAGTCA-----------CTCCAACT------CAGGCCACCCCGGAGCTATCCCAGCGGCTCTTCGGCTCCTCTTCGACGACGSizeHit CountTotal NormTotal
No Reads
dm3
TATTAATCAA------------------------------------------------------GCAGATCCTTT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CA--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTAA-TTCATTTG-TTTG----------GG----------------------------------------------------------AT-TGGG----------CAAA------TTC---CAGTCAA--------------------------G--GAGCTGCTTTCCTATTT---------------------------AAACTGTCTTTAATGGGT--------CCGGA---AAT----------------------A---TAA-------------------------------------TT-CAT--------ATTTTA----AA--TATC--TTTGATTACAGTTA-----------CTCCTACT------AAGGCCACTCCAGAGCTCTCCCAGCGGCTCTTCGGCTCCTCTTCGACGACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
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1182-2H		V148
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................................................................................................................................................................................................................................................................................................................TTCATTTG-TTTG----------GG----------------------------------------------------------AT-TGGG----------C..................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................TTT---------------------------ATA------TT----ATCGTTTAAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-CAT--------ATTTTA----AA--TATC--TTTGATTACAG...............................................................................2811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGGGT--------CCGGA---AAT----------------------A---T...................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................CACT--------------CA--AAACA-AAATCAGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TAAAA---TACACAATG--------------------CAAAAAACACT--------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TC---CAGTCAA--------------------------G--GAGCTGCTTTCC...................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................TTAAAACTGAC--------------------------------------CAACAGAAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................AAAAAACACT--------------CA--AAACA-AAATCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................AAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AATCAA------------------------------------------------------GCAGATCCTTT---------------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TAAAACTGAC--------------------------------------CAACAGAAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................ACA-AAATCAGTTCTGAAACACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GTTTAAAACTGAC--------------------------------------CAACAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------AAACTGTCTTTAATGGGT--------.........................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................AGAAGAAAAA--TAAAA---TACACAATG--------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GCAGATCCTTT---------------------------ATA------TT----ATCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................A-AAATCAGTTCTGAAACACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCAGCGGCTCTTCGGCTCC............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TATTAATCAA------------------------------------------------------GCAGATCCTTT---------------------------AT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CTGAAACACAAAATT-----GATTG--T--.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAGCTCTCCCAGCGGCTCTTC..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTACT------AAGGCCACTCCAGAG....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TCATTTG-TTTG----------GG----------------------------------------------------------AT-TGGG----------C..................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTA-----------CTCCTACT------AAGGCC.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TCGTTTAAAACTGAC--------------------------------------CAACAGAAGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTTAAAACTGAC--------------------------------------CAACAGAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCAGTTCTGAAACACAAAAAA-----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................ATG--------------------CAAAAAACACT--------------CA--AAAAT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TATTAATCAA------------------------------------------------------GCAGATCCTTT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACATT--------------CA--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTAA-TTCATTTG-TTTG----------GG----------------------------------------------------------AT-TGGG----------CACC------TTC---CAGGCAA--------------------------G--GA---ACTATGCTATTT---------------------------AAACTGCCTTTAATGGGT--------CCGGA---AAT----------------------AC--TAA-------------------------------------CT-CAT--------ATTTTA----AA--TATC--TCTAATTGCAGCTA-----------CTCCTACT------AAGGCCACTCCAGAGCTCTCCCAGCGGCTCTTCGGCTCCTCTTCGACGACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................GCAGATCCTTT---------------------------ATA------TT----ATCGTTTAAAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGAGCTCTCCCAGCGG........................2111.00110000000000000000
..............................................................................................................................................................................................................................................................AACA-AAATCAGTTCTGAAACACAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAATTGCAGCTA-----------CTCCTACT------AAGGC..............................................2711.00100000000010000000
..............................................................................................................................................................................CAGAAGAAAAA--TAAAA---TACACAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
................................................................................................................T----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCAGCGGCTCTTCGGCT..............2111.00101000000000000000
.....................................................................................................................................................................................................................................AACATT--------------CA--AAACA-AAATCAGTTCTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
.................................................................................................................................TGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
...............................................................................................................................................................................................................................................................ACA-AAATCAGTTCTGAAACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
......................................................................................................ATA------TT----ATCGTTTAAAACTGAC--------------------------------------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.....................................................................................................................................................................................................................................AACATT--------------CA--AAACA-AAATCAGTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
......................................................................................................................TCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
...............................................................................................................TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.....................................................................................................................................................................................................................................................................ATCAGTTCTGAAACACAAAAAA-----A......................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.33100000010000000000
droSec2
TATTAATCAA------------------------------------------------------GCAGATCCTTT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CA--AAACA-AAATCAGTTCTGAAACGCAAAATT-----GATTG--T--TTTAA-TTCATTTG-TTTG----------GG----------------------------------------------------------AT-TGGG----------CACA------TTC---CAGGCAA--------------------------G--GA---ACTATGCTATTT---------------------------AAAGTGCCTTTAATGGGT--------CCGGA---AAT----------------------AT--TAA-------------------------------------CT-CAT--------ATTTTA----AA--TATC--TCTAATTGCAGCTA-----------CTCCTACT------AAGGCCACTCCAGAGCTCTCCCAGCGGCTCTTCGGCTCCTCTTCGACGACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................ACA-AAATCAGTTCTGAAACGCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
.......................................................................................................................................................................................AA--TAAAA---TACACAATG--------------------CAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droYak3
TATTAATCAA------------------------------------------------------GCAGATCATTT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CG--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTAA-TTCAATT--TTTG----------GG----------------------------------------------------------ATCTGGGA----------------------------------------------------------T--GA---ACAATTGAACTTAACACAT----------ATGAATGAATAAATTGTGTTAATTGGGT--------CTGGACTAAAT-AA---TATAA-----------------------------------------------CAAAATAACT-CATAT----AC--ATGA----AA--CATC--T-TAATTGCAGTTA-----------CTCCAACC------AAGGCCACTCCAGAGCTCTCCCAGCGGCTCTTCGGCTCCTCTTCGACGACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................AA---TACACAATG--------------------CAAAAAACACT--------------CG--AAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
....AATCAA------------------------------------------------------GCAGATCATTT---------------------------ATA------TT----ATCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..............................................................................................................................................................................................................................................................AACA-AAATCAGTTCTGAAACACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................TT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
........................................................................................................................................................................................................................................ACT--------------CG--AAACA-AAATCAGTTCTGAAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
droEre2
TATTAATCAA------------------------------------------------------GCAGATCATTT---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACAGAAGAAAAA--TAAAA---TACACAATG--------------------CAAAAAACACT--------------CG--AAACA-AAATCAGTTCTGAAACACAAAATT-----GATTG--T--TTTAA-TTCCTTT--TTTG----------GG----------------------------------------------------------AA-TGGG-----------AAA------TTC---CGCTCAA--------------------------G--CT---ACTTTTGTATTTAATACAGCTT------CATCAAGA----------ATTTAAT---------------------------------------TGAATTAT--TAA-------------------------------------AC-GTT--------AAATTA----AG--TTT---TC----T----------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................T---------------------------ATA------TT----ATCGTTTAAAACTGAC--------------------------------------CAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0022000000
....................................................................................................................................................................................................................................................................AATCAGTTCTGAAACACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.........................................................................TT---------------------------ATA------TT----ATCGTTTAAAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................................................................................................GAAACACAAAATT-----GATTG--T--.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....ATCAA------------------------------------------------------GCAGATCATTT---------------------------ATA------TT----ATCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000
....AATCAA------------------------------------------------------GCAGATCATTT---------------------------ATA------TT----ATCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..................................................................AGATCATTT---------------------------ATA------TT----ATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
......TCAA------------------------------------------------------GCAGATCATTT---------------------------ATA------TT----ATCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
......TCAA------------------------------------------------------GCAGATCATTT---------------------------ATA------TT----ATCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
dp5
TATTATTCTGATATATATTTATAACTAATTTTTGTTATAGTAGGAAGGAGAACTATCAAGTAAAACAGAACTTTTT-----------------------ATAATAATACTATT----ATCGCTTA--ACTGCTAAACAAACAACAAACAAACAAACAACAACAACAAACAAAAACAGAAGAGAAA--TAAAA---TACACGATG--------------------CAAAAA-AACA--------------CA--AAACAAAAATCAGTTCTGAACCA-AAAATT-----GATTG--T--TTTTT-TT-------ATTG----------AATTTAGTTATAAAAAAAACAGGATTTTCCCCCACAAC-AAAACATTTAGCATAATTGGCATCTAAAAAA-ATAATTCG--------------------------------------------AAA--------------------------------------------------------------------------------------------------------TT--AA-------------------------------------------------------TT---TTCA--AAC-TATA--TTTTTACAGTCA-----------CAGCCGCCCAGTTGCAGGCCACACCGGAACTCTCGCAGCGGCTCTTTGGGTCCACCTCAACGCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................TTTTGTTATAGTAGGAAGGAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000500
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCGGAACTCTCGCAGC..........................1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTCTTTGGGTCCACCTCAC.....2211.0010010000000
................................TGTTATAGTAGGAAGGAGAACTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..............................................................................................................................................................................................................................................................AACAAAAATCAGTTCTGAACCA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....................................ATAGTAGGAAGGAGAACTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
............................TTTTTGTTATAGTAGGAAGGAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000000
..................................................................................................................................................................................................................................................................AAAATCAGTTCTGAACCA-AA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
..................................................................................................................................................................AACAAACAAAAACAGAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
........................................................................................................................................................AAACAACAACAACAAACAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510100000000
........................................................................................................................................................AAACAACAACAACAAACAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410100000000
.........................................................................................................................................................AACAACAACAACAAACAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110100000000
droPer2
TATTATTCTGATATATATTTATAACTAATTTTTGTTATAGTAGGAAGGAGAACTATCAAGTAAAACAGAACTTTTT-----------------------ATAATAATACTATT----ATCGCTTA--ACTGCTAAACAAACAACAAACAAACAAACAACAACAACAAACAAAAACAGAAGAGAAA--TAAAA---TACACGATG--------------------CAAAAAACAC----------------A--AAACAAAAATCAGTTCTGAACCA-AAAATT-----GATTG--T--TTTTT-TTTTT----ATTG----------AATTTAGTTATAA----AACAGGATTTTCCCCCACAAAAAAAACATTTAGCATAATTGGCATCTAAAAAA-ATAATTCA--------------------------------------------AAA--------------------------------------------------------------------------------------------------------TT--AA-------------------------------------------------------TT---TTCA--AAC-TATA--TTTTTACAGTCA-----------CAGCCGCCCAGTCGCAGGCCACACCGGAACTCTCGCAGCGGCTCTTTGGGTCCACCTCAACGCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................ATAGTAGGAAGGAGAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
........................................................................................................................................................................CAAAAACAGAAGAGAAA--T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
..................................TTATAGTAGGAAGGAGAACTATCAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........................................................................................................................................................AACAACAACAACAAACAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.081010000
droWil2
TATTAATCAATCATCT-TATCTAACTAATTTTTGTTATAATCT---------------------------ATTTTTATTA--------------------T-GGAAT----------A-CGATT-AAACCGAA--------------------------------------AAAGAGAAGAGAGAAAT------------------------------------AAAAATACACA--------------CG--AAAAA-AAAACACTTTTGAAAAAGAAAACA-----AATTG--AAGTTTAA-CTTATTTTTAATCAAACTCT-------------------------------------------------------------------GGG----------------------------------------------------------------------------------------------------------------GCTTTAAAAATT--------T------------------------------------------TTGATTTATATA----------------------TT-TTT--------TTTTTA----AA--TACC--AATAATAATAATATATGTATGCTCTTTGATCTT------ACAGCCACACCAGAATTATCACAACGACTTTTTGGCTCG------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................TTTATTA--------------------T-GGAAT----------A-CGATT-AAACCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
..................................................................................................................................GAA--------------------------------------AAAGAGAAGAGAGAAAT------------------------------------AAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
....................................................................................................................................A--------------------------------------AAAGAGAAGAGAGAAAT------------------------------------AAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...................................................................................................................................AA--------------------------------------AAAGAGAAGAGAGAAAT------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...............................................................................................................................ACCGAA--------------------------------------AAAGAGAAGAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
...........................................................................................................................................................................AAAGAGAAGAGAGAAAT------------------------------------AAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...........................................................................................................................................................................AAAGAGAAGAGAGAAAT------------------------------------AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.............................................................................TTA--------------------T-GGAAT----------A-CGATT-AAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..............................................................................................................................AACCGAA--------------------------------------AAAGAGAAGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
droVir3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACACCCGAGCTCTCGCAGCGACTTTTCGGCACGTCCA---CGCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TATTATTCAT-------TAAAAAAATACATTTTGTTATATT---------------------------------TTATTACGAAATACGAAAAATGATTATTATTA-----TTATATATCGATTA--ATTGACA-------------------------------------AATGTGAAGAGAAA--TAAAA---TACACA-----------------------CACACAACAAC--------------AA--CAACT-A-AACAGTTCTGTAAAAGAAA-CA-AATTGTTTGCGT--T-TTA-TTTTT-----------------------AGT----------------------------------------------------TTTTA----------------------------------------------------------AAAT--TA---ATATTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------AT--T-TA--------T-----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................ACAGTTCTGTAAAAGAAA-C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.004000040
.......................................................................................................................................................................................................................................CAAC--------------AA--CAACT-A-AACAGTTCTGTAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
........................ATACATTTTGTTATATT---------------------------------TTATTACGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................TGACA-------------------------------------AATGTGAAGAGAAA--TA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGACGCCCGAGCTGTCGCAGCGACTCTTTGGCTGCTCAGCGGCAAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:21 PM