ID:

dan_41

 Coordinate:

scaffold_13335:210927-210986 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.6 -32.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTAAATGAAAATAAAGTTAAAATATTGTAAATATATAATAATTCTGTTTTCTGCTCGCTAGATGTAAGTTGGAAGTTTTGAAGTCCTATTTACATTAGTAGGCAGAGAATAAGATTATTACATTCTACGAAATATATGTTATATATATTTAAGGAGTCT

***********************************.((((((((.(((((((((((.(((.(((((((((.(((..........))).)))))))))))).))))))))))).))))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 V055

head

 V106

head

 M044

female body

 M058

embryo
.......................................................................................TATTTACATTAGTAGGCAGAGA................................................... 22 0 1 263.00 263 234 18 7 2 2
.......................................................................................TATTTACATTAGTAGGCAGAG.................................................... 21 0 1 140.00 140 126 7 3 2 2
.......................................................................................TATTTACATTGGTAGGCAGAGA................................................... 22 1 1 34.00 34 27 4 2 1 0
.......................................................................................TATTTACATTGGTAGGCAGAG.................................................... 21 1 1 23.00 23 20 2 1 0 0
.......................................................................................TATTTACATTAGTAGGCAGAGT................................................... 22 1 1 22.00 22 20 1 1 0 0
.......................................................................................TATTTACATTAGTAGGCAGAGAT.................................................. 23 1 1 15.00 15 12 2 0 1 0
.......................................................................................TATTTACATTAGTAGGCAGA..................................................... 20 0 1 15.00 15 14 1 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGAGAA.................................................. 23 0 1 11.00 11 9 1 0 1 0
..................................................TCTGCTCGCTAGATGTAAGTTGG....................................................................................... 23 0 1 10.00 10 6 1 2 1 0
.......................................................................................TATTTACATTAGTAGGCAGAGAAA................................................. 24 1 1 6.00 6 5 0 0 0 1
.......................................................................................TATTTACATTAGTAGGCAGAGATT................................................. 24 1 1 6.00 6 5 1 0 0 0
.......................................................................................TATTTACATTGGTAGGCAGA..................................................... 20 1 1 6.00 6 6 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGATA................................................... 22 1 1 3.00 3 3 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGAT.................................................... 21 1 1 3.00 3 3 0 0 0 0
.......................................................................................TATTTACATTAGCAGGCAGAG.................................................... 21 1 1 2.00 2 2 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGAGAAAA................................................ 25 1 1 2.00 2 2 0 0 0 0
.........................................................................................TTTACATTAGTAGGCAGAGT................................................... 20 1 1 2.00 2 2 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCCGAG.................................................... 21 1 1 2.00 2 2 0 0 0 0
.......................................................................................TATTTACATTGGTAGGCAGAGAAA................................................. 24 2 1 2.00 2 2 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGAGTT.................................................. 23 2 1 2.00 2 2 0 0 0 0
.......................................................................................TATTTACATTAGTAGACAGAGA................................................... 22 1 1 2.00 2 2 0 0 0 0
.......................................................................................TGTTTACATTAGTAGGCAGAGA................................................... 22 1 1 2.00 2 2 0 0 0 0
.......................................................................................TATTTACATTACTAGGCAGAGT................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGAGAGAA................................................ 25 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACACTAGTAGGCAGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGCTA................................................... 22 2 1 1.00 1 0 1 0 0 0
..................................................TCTGCTCGCTAGGTGTAAGTTGG....................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTTGTAGGCAGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACGTTAGTAGGCAGAG.................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGGGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TCTTTACATTAGTAGGCAGAG.................................................... 21 1 1 1.00 1 1 0 0 0 0
...................................................................................GATCTATTTACATTAGCAGGCAGAGA................................................... 26 3 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACAGTAGTAGGCAGA..................................................... 20 1 1 1.00 1 0 0 0 1 0
.......................................................................................TATTTACATTAGTCGGCAGAGT................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGAGTATTT............................................... 26 3 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACACTGGTAGGCAGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0
........................................................................................ATTTACATTAGTAGGCAGAGAAA................................................. 23 1 1 1.00 1 0 0 0 1 0
.......................................................................................TATCTACATTAGTAGGCAGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTCGGCTGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGAGAAT................................................. 24 0 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGAGTTT................................................. 24 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTGGTAGGCAGAGT................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCGGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTACTAGGCAGAG.................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACAGTAGTAGGCAGAGA................................................... 22 1 1 1.00 1 0 0 0 1 0
.......................................................................................TATTTACATTAGTAGGCAGAGATAT................................................ 25 3 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGCCAGAGA................................................... 22 1 1 1.00 1 0 1 0 0 0
.......................................................................................TATTTACAGTGGTAGGCAGAG.................................................... 21 2 1 1.00 1 1 0 0 0 0
.......................................................................................AATTTACATTAGTAGGCAGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTATTAGGCAGAGT................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTGGTAGGCAGAGATA................................................. 24 3 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTGGTAGGCAGAT.................................................... 21 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTGGAAGGCAGAG.................................................... 21 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTGGGCAGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................................................ACGATCTATTTACATTAGTAGGCAGAGA................................................... 28 3 1 1.00 1 0 0 0 0 1
.......................................................................................TATTTACATGGGTAGGCAGAGA................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................GATTTACATTAGTAGGCAGAG.................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCACAG.................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGTCAGAGAAA................................................. 24 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGTCAGAG.................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGAAGAG.................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGAGATC................................................. 24 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGAAGGCAGTGA................................................... 22 2 1 1.00 1 0 1 0 0 0
.......................................................................................TTTTTACATTAGTAGGCAGC..................................................... 20 2 1 1.00 1 0 1 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGGG.................................................... 21 1 1 1.00 1 0 1 0 0 0
.......................................................................................TATTTACATTAGTAGGCATAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGGAGGCAGAGAA.................................................. 23 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGACA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATCTAGATTGGTAGGCAGAGA................................................... 22 3 1 1.00 1 0 1 0 0 0
.......................................................................................TATTTACATTATTAGGCAGAG.................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................................................TCTTTACATTAGTAGGCAGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTGCATTAGTAGGCAGA..................................................... 20 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGACT................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGTCAGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACACTAGTAGGCAGA..................................................... 20 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTAAATTAGTAGACAGAG.................................................... 21 2 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGAAGGCAGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTAGTAGGCAGAAA................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................TATTTACATTGGTAGGCAGAGAT.................................................. 23 2 1 1.00 1 1 0 0 0 0
.......................................................................................TAGTGACATTAGTAGGCGGAGA................................................... 22 3 2 0.50 1 0 1 0 0 0
.......................................................................................TATTTACATTAGTTGCCAGAGAC.................................................. 23 3 2 0.50 1 0 1 0 0 0

Anti-sense strand reads

TAATTTACTTTTATTTCAATTTTATAACATTTATATATTATTAAGACAAAAGACGAGCGATCTACATTCAACCTTCAAAACTTCAGGATAAATGTAATCATCCGTCTCTTATTCTAATAATGTAAGATGCTTTATATACAATATATATAAATTCCTCAGA

************************************.((((((((.(((((((((((.(((.(((((((((.(((..........))).)))))))))))).))))))))))).))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V055

head

 V039

embryo
................................................................................................................................GCTTGAAATACAATAGATATAAA......... 23 3 2 0.50 1 1 0
............................................................................CAAACTCCAGGATAAATGGA................................................................ 20 3 20 0.05 1 1 0
.............................................................................................CCAATCATCCGTCCCTTAT................................................ 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13335:210877-211036 + dan_41 confident ATTAAATGAAAATAAAGTTAAAATATTGTAAATATATAATAATTCTGTTTTCTGCTCGCTAGATGTAAGTTGGAAGTTTTGAAGTCCTATTTACATTAGTAGGCAGAGAATAAGATTATTACATTCTACGAAATATATGTTATATATATTTAAGGAGTCT
droKik1 scf7180000302610:1797033-1797166 + TTCAAAATAAAATAAATAAAATATTTTATAAATATATT-TATTAATATATCATACTTAATAAATATATTTAGTAATATATATTATTTAATAAATA---TTTAATTATGAATTAAAATAAAATATTTTACAAAATTTAT----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ATTAAATGAAAATAAAGTTAAAATATTGTAAATATATAATAATTCTGTTTTCTGCTCGCTAGATGTAAGTTGGAAGTTTTGAAGTCCTATTTACATTAGTAGGCAGAGAATAAGATTATTACATTCTACGAAATATATGTTATATATATTTAAGGAGTCTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................TATTTACATTAGTAGGCAGAGA...................................................221263.00263220182347
.......................................................................................TATTTACATTAGTAGGCAGAG....................................................211140.0014022071263
.......................................................................................TATTTACATTAGTAGGCAGAGT...................................................22122.00220001201
.......................................................................................TATTTACATTAGTAGGCAGAGAT..................................................23115.00151002120
.......................................................................................TATTTACATTAGTAGGCAGA.....................................................20115.00150001140
.......................................................................................TATTTACATTAGTAGGCAGAGAA..................................................23111.0011100190
..................................................TCTGCTCGCTAGATGTAAGTTGG.......................................................................................23110.0010100162
.......................................................................................TATTTACATTAGTAGGCAGAGAAA.................................................2416.006010050
.......................................................................................TATTTACATTAGTAGGCAGAT....................................................2113.003000030
.........................................................................................TTTACATTAGTAGGCAGAGT...................................................2012.002000020
.......................................................................................TATTTACATTAGTAGGCAGAGTT..................................................2312.002000020
........................................................................................ATTTACATTAGTAGGCAGAGAAA.................................................2311.001100000
.......................................................................................TATTTACATTAGTAGGCAGAGAAT.................................................2411.001000010
.......................................................................................TATTTACATTAGTAGGCAGAGATAT................................................2511.001000010
.......................................................................................TATTTACATTAGTAGGCAGAGATC.................................................2411.001000010
.......................................................................................TATTTACATTAGTAGGCAGACT...................................................2211.001000010
droKik1
TTCAAAATAAAATAAATAAAATATTTTATAAATATATT-TATTAATATATCATACTTAATAAATATATTTAGTAATATATATTATTTAATAAATA---TTTAATTATGAATTAAAATAAAATATTTTACAAAATTTAT----------------------SizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 06:50 PM