ID:

dan_406

 Coordinate:

scaffold_12911:3087692-3087842 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.3 -24.3 -24.3

Flybase annnotation

exon [dana_GLEANR_7880:2]; CDS [Dana\GF23219-cds]; intron [Dana\GF23219-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron+
mature
  1. scaffold_12372:22-45 +
  2. dan_406  scaffold_12911:3087815-3087838 +
  3. scaffold_12928:489094-489117 +
  4. scaffold_12947:1126770-1126793 +
  5. scaffold_12966:272932-272955 +
  6. scaffold_13034:1709495-1709518 +
  7. scaffold_13077:313948-313971 +
  8. dan_3728  scaffold_13230:1207021-1207044 +
  9. scaffold_13250:1997595-1997618 +
  10. scaffold_13250:3345866-3345889 +
  11. scaffold_13260:218024-218047 +
  12. scaffold_13260:2057865-2057888 +
  13. scaffold_13339:2934548-2934571 +
  14. scaffold_13417:5064905-5064928 +
  15. scaffold_13417:5159540-5159563 +
  16. scaffold_13417:6164036-6164059 +
  17. scaffold_13499:1021296-1021319 +
  18. scaffold_13767:1262893-1262916 +
  19. scaffold_13767:1263310-1263333 +
  20. scaffold_13770:254203-254226 +
  21. scaffold_13137:1008402-1008425 +
  22. scaffold_13165:226546-226569 +
  23. scaffold_13339:2860191-2860214 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACTTTCGCCAAGACGAGCGCGGTTTACAATCCCATCGTATATGGAATCAGGTGAGTAGAAAATTCTTACTAGGGATCTTCGTTTACATAGCCTTGACCTACACGTCGAATGAGTAATTTTTCGCAAACTATAGTAGCTATTTATGAGAGTATTTGATAGATGTTTATAGCCTTACAGAGGGTATTATAATTTTGGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATAT
**************************************************(((((..(((.((((((...)))))).))).)))))......((((((.......((((.((....)).))))....((((((..((.((((((.(((...))).))))))))))))))((((...)))).............))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V055
head
 V105
male body
...........................................GAATCAGGTAAGGAGAAAA............................................................................................................................................................................................. 19 2 1 2.00 2 1 1 0 0 0
..............................................................................................................................................................................................................CAACGCAGTGAAGGAGACATCTCCGACC................. 28 0 20 1.55 31 31 0 0 0 0
............................................................................................................................................................................................................TGCAACGCAGTGAAGGAGACATC........................ 23 0 20 1.50 30 30 0 0 0 0
...............................................................................................................................................TGAGATCATTTGATAGTTGTTT...................................................................................... 22 3 3 0.33 1 0 0 0 1 0
...........................................................................................................................................................................................AATTTTGGTCAAAAGTGTGCAACGCA...................................... 26 0 20 0.25 5 0 0 5 0 0
...........................................GAATCAGGTAAGGAGAAAAAT........................................................................................................................................................................................... 21 3 9 0.22 2 0 1 0 0 1
..............................................TCACGTGAGTAAATAATTCT......................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0
........................................ATTGAATCAGGTAAGGAGAA............................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0
...........................................GAATCAGGTAAGGAGAAA.............................................................................................................................................................................................. 18 2 10 0.10 1 1 0 0 0 0
...............................................................TCATACTAGGGATCTCCGG......................................................................................................................................................................... 19 3 10 0.10 1 0 1 0 0 0
.............................................................................................................................................................................ACAGAGGGTATTATAATTTTGGTC...................................................... 24 0 20 0.10 2 1 0 1 0 0
............................................................................................................................................................................................................TGCAACGCAGTGAAGGAGA............................ 19 0 20 0.10 2 0 2 0 0 0
...............CGCACGGTTTACACTCCCA......................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 1 0 0
...............AGCGCGGTTTAAACTTCCA......................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 1 0
.................................................................................................................................................AGCGTACTTGATAGTTGTT....................................................................................... 19 3 20 0.05 1 0 0 0 1 0
.........................................................................................................................................................................................ATAATTTTGGTCAAAAGTGTGCAACGC....................................... 27 0 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TGAAAGCGGTTCTGCTCGCGCCAAATGTTAGGGTAGCATATACCTTAGTCCACTCATCTTTTAAGAATGATCCCTAGAAGCAAATGTATCGGAACTGGATGTGCAGCTTACTCATTAAAAAGCGTTTGATATCATCGATAAATACTCTCATAAACTATCTACAAATATCGGAATGTCTCCCATAATATTAAAACCAGTTTTCACACGTTGCGTCACTTCCTCTGTAGAGGCTGGGATATTTCATATATATA
**************************************************(((((..(((.((((((...)))))).))).)))))......((((((.......((((.((....)).))))....((((((..((.((((((.(((...))).))))))))))))))((((...)))).............))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V055
head
...............TCGGGCCAAATGTGAGGGTT........................................................................................................................................................................................................................ 20 3 10 0.10 1 0 1
....................................................CTCATCGGTTAAGAATGTT.................................................................................................................................................................................... 19 3 11 0.09 1 1 0
............................................................................................................................................................................TTGTCTCCCATAATATTAAAACCAG...................................................... 25 1 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12911:3087642-3087892 + dan_406 ACTTT---C-----GCCAAGA-CGAG-------------------------------------------------------CGC------GGTTTACAATCCCATCGTATA---TGGA-----------ATCAGGTGAGTAGA-------AAA-----TTC--------------------------TTACTAGGG----ATCTTCGTTTA------------------------------------------------------------------------------------CATAG--CCTTGACCTACA---------------CGT--------------------------------------------------------CGAATG------------------------------AGTA-------------------------------------------ATTTTTC---------------GC------------------------AAACTATAG---------------------------------------------------T------AGCTATTTATGAGA------GT------------------------AT---------------------------------------------T-----TG---ATAGATGTTTATAGCCTT-----AC-------A------GAGGGTATTATAATTTTGG--TC-----AAAAGTGTGC-AACGCAGTGAAGGAGACA-TCTCCGACCCTATAAAGTAT------ATATAT
droBip1 scf7180000394007:3266-3527 - TCCTC---T-----GGCAAGA-TTGA-------------------------------------------------------AGA------GGCCAAAAATGCCGTGTGAAC---TGAA-----------ATTAGAAATGTATA--T----AAA-----TTA--------------------------TTAAAATTTATGAAATTTCCTATG----------------------------GCTTATACCTAACGTCAAT-----------CAATTT----------------------------------------------------------------------------TGGTAAAAATA-----------------------------------AACCAATTTTATGGGCGTTTGAAAAAAAAT------------------------------------------------------------------------------------------------------------------------TG--------------------------------------AC-------------------------------------------AT-TTT-T------------------T---CCCT-----------------------T------TTTTATACCCTT-----GC-------A------GAGGGTATTATAATTTTGG--TC-----AAAAGTGTGC-AACGCAGTGAAGGAGACA-TCTCCGACCCTATAAAGTAT------ATATAT
droKik1 scf7180000302590:81582-81792 + GTATA---CG-----TGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTAAACAAATA----TT---------CAAAGTAAAAAACTTTACTCAAAATAAC----------------------------------------------------------------CTCAACATATA---------------ACCAAA-----AA----------------------------------------------------------------------------------AAT------------------------------------------------------------------------------------------------------------------------TG--------------------------------------ACTATTTGAA----GA------------------------------A--AA-TATTTGCCACA---GAGCT--------CGGTT------------------TTATAATATTTATACCCTT-----GC---------------AGGGTATTATAATTTCAG--TC-----AGAAGTTTGC-AACGCAGTGAAGGAGACG-TTTCCGACCCTATAAAGTAT------ATATAT
droFic1 scf7180000453829:263833-264013 + TAAG---AAA-----TTCTGA-TTTT------TGCTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--CCTTCACTTAGA---------------TCTGAA-----TG----------------------------------------------------------------------------------TGT--------CAAATTTTTGCAAA-----------AAATA-------------------------------------GGTAT-----------------------------------------------------------------------------------------------------------------------------AG--TGTT------------------C---CACT-----------------------T------TTTTATACCCTT-----GC-------AGAGCA-AAGGGTATTATAATTTTGG--CC-----AGAAGTTTGC-AACGCAGTGAAGGAGACA-CCTCAGACCCCATAAAGTAT------ATATAT
droEle1 scf7180000491278:1299827-1300072 - GCCT---AGA-----CAGGGA-TGAG------CCCCTTT-------------------------------------------------------CAT----TCATTATTTA---TGGT-----------ATCGCTATAGCTAA-------ATC-----TTTTTTACAGTTCTCTTCGTGTAAATAA-AAACAAACA----TT---------TAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAAATAATTTCCGAGGCGTTTAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------T------AA------ATGTAA------GC------------------------ATCCAATT------------------T---CATA-----------------------T------TTTTATACCCTT-----GC-------A------GAGGGTATTACAGTTTCTG--TC-----AGAAGTTTGC-AACGCAGTGAAGAAGATA-TCTCCGACCCTATAAAGTAT------ATATAT
droRho1 scf7180000776960:93377-93603 + AGTGC---GG-----TTTA-----------------------------------------------------------------------------TAAT-----------------------------------------------TCAGACAAAGA--------------------------------GTATGG----ATCTT------------------------------------------------------------------------------------ATAATATGAAG--TATTGAATTACA---------------------------------------------------ATTACTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTTTTCATAATT-------------------------------------------ATTATTAATA------AATTAATACTGCATTTTTTA--------------------------------ATACTGCCTTT---CGATAT-T-----TCT-T------AATTATACCCTT-----GC-------A------GAGGGTATTATAATTTTGG--TC-----AAAAGTGTGC-AACGCAGTGAAGGAGACG-TTTCTGACCCTATAAAGTAT------ATATAT
droBia1 scf7180000302519:129765-130020 + ACTTT---T-----AACGAGGT--------------------------------------------------------------AAGCGGA---------------C---GTG----------------------------------GC--------------------------------------GATCGCGCA----CTATC--------------------AACGTACAAAAGTT-------------------------------------------------------------------CTG--------------------------------------------ATATCGAAAATTGTGACGAATGATTCTTGTTTATTC------------------------------------------------------------GACTAAATAAATA---------CTCTTTCACCGTTGCATTATTTGTTTATAA-----------------------------------------------------------------------------------------------------------------------------TTATTAAT-TAT----------------------------------------TTTCATTTTACT------TCTTTTGCCCTT-----GC-------A------GAGGGTATAATGATATTAT--TT-----AGAAGTTTGC-AGCGCAGTGAAGGAGACG-ATTCCGACCTCATGAAGAATACGAGTATATAT
droTak1 scf7180000415875:295398-295619 + GCAAT---C-----CA--------------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGATCCACTCAGAAA--AATAATAGATTCGTTTAAATATTTTGAATCTATTTGAAGAGATTTAAAGATGGTTGGTAAACTAGGTATACATTAAAAAA-----------------------TTTTAAAT-CAT-T------------------T---TCTT-----------------------T------CTTTATACCCTT-----GC-------A------GAGGGTATTATGATTTCAG--TC-----AGAAGTTTGC-AACGCAGTGAAGGAGACG-TTTCCGACCCCATAAAGTAT------ATATAT
droEug1 scf7180000409676:222351-222554 - CATTT---G------CAAAAA-CAAGAAAGGTAATTTTATATAAATTTATAAGTAGTCAAATTTTTTCTGGGGGAATTCATTTA------TCTGACCTACCGACTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTG------------------------------GGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------T------TATTATATTCGCCAAGCGT-------AGGATAAAATGGTATACTATATCCCT--TG-----GCAAT--TACAAATTGGTAGAAGGAAGCTTTCCCCGACCCTGTTGAATGT------ATATAA
dm3 chr2R:1380311-1380522 - AAAT---AAA-----TAGGA-----------------------------------------------------------------------------------------------------------------------------------AA-----TGA--------------------------TTAATTTTG----ATTTTAGTTTG----------------------------ATTAAAATCTAACGACTAC-----------------------------------------CTGC-------------------------CATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTTTCAACATAATTGA------AAATATTAAAA----AGAAATT------------------------AT--TG-T------------------T---TCTA-----------------------T------ATTTATACCCGTTACTCGT-------AGATTAAGTGGTTATACTAGATTCGT--TC-----AAA----TGT-AACAGGCAGAAGGAAGCG-TTTCCGACCATATAAAGTAT------ATATAT
droSim2 3r:293745-293937 - AAATT---C-----TATTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTGATG-----------------------------------GTATTGTTTTACAAGCAACTTAAAATAAATTATAATTC--------------AGTTAAATAAA--------------------------------------------TAT-----------------------------------------------------------------------------------------------------------------------------AT--TTTA------------------CCGCTCGA-----------------------T------TTTAATACCCGTTACTCAT-------AGGTTAAAAGGGTATACTAGA-TCGT--CG-----AAAAGTATGT-AACAGGTAGAAGGAAGCG-TTTCCGACCATATAAAGTAT------ATATAT
droSec2 scaffold_132:19009-19174 - TCACA---TA-----GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTGAGATAAGTTTCACGAAACACAT---------------------------------------------------T------TCCT---------------------------------------------------------------------------T-TTTTTTTATAT-T-----TC---ATAAATTTTTATACCAGTTACTCGT-------ATA-TGGTAGGATATACTAAATTCGT--TA-----AAAAGTATGT-AACAGGCAGAAGAAGGTG-TTTCCGACTATATAAACTAT------ATATAT
droYak3 2L:18966008-18966233 + TGGGA---CC-----TGGAGA-A--------------------------------------------------------------------------------------------------------------------TATA-------AAAGAAAT--A--------------------------CCTTTAGGG----ACCTA------------------------------------------------------------------------------------TTAATACCTAT--TCTTGGAAAACATTTCGATTCATTACTATGGGAAGACTTTGGG-----TAACTTTCTAAAGCCCTTAAAGCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA-----------------------T------TTTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAGATTCGT--TG-----AAAAGTATGT-AACAGGCAGAAGGAAGCG-TTTCCGACCATATAAAGTAT------ATATAT
droEre2 scaffold_4820:6297891-6298095 + ACCTT---CA-----TCCAAA-GT-------------------------------------------CTAGCACCGCTGAACTC------GGCGGCCAATCCGCTGATCTA---TT---------------------------------------------------------------------------------------------------------------------------GCC-------------------------------------------------------TCT--TC------T-----------------CATCGCAAGTCTT---------------------------------------------------------------------------------------------------------------------------------------TC---------------GCACACTAAGGTAA-----------------------------------------------------------------------------------------------------------------------------AT--TG-A-------------------------------------GCCTG-------T------TTTTATACCCCTTACTCGT-------AGAGTAAAAGGGTATACTAGACTTGT--TG-----AAAAGTATGT-AACAGGCAGAAGGAAACA-TTTCCGACTATATAAAGTAT------ATATAT
dp5 4_group4:6147920-6148126 - TCCGT---T-----GAATA--------------------------------------------------------------------------------------------------------------------------GTTATGGC--------------------------------------TAACTAAGA----CTCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTGCCCACATATTTTTATCCCA-------------------------------------TTGAT----GA------------------------------A--TA-AATTTTCTACAAGATTGGC--------TGGTT---TTGAGTCC-------T------TGTTATACCCGATACTCCA-----AAT-----GAGGGGTATATTAGATTTGTGATAAAAGTGGATGTGTGT-AACGTCCTGAAGGAATCG-TTTCCGACCCCATAAAGTAT------ATATAT
droPer2 scaffold_6:4674211-4674387 + TGGA---AAATTTTCACAAGGG--------------------------------------------------------------CAAAGTC---------------C---GCG----------------------------------------------------------------------------------------------ATGA----------------------------------------------A-----------------------------------------ATGCCGAGATCTCCA---------------C--A-------------------------------------------------------CGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCT--------TAGTT----------T-------T------TTTTATACCCGATACTCAA-----AATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGT-AACGTCCAGAAGGAATCG-TTTCCGACCCTATAAAGTAT------ATATAT
droWil2 scf2_1100000004958:1854964-1855220 - TTAA---AAA-----GCT------------------------------------------------------------------TACCGCA---------------T---ATGCTGACCTTACTTGAGGATTAA-----------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTAAATTTTATTTCAAAGGCACTGACAGAGCTAGATTAACTAGTCGAACG------------------------------AGCAACAATTG--------------TA------------------------TTC---------------AC------------------------TAAATATTC---------------------------------------------------C------AACTTTTTCTT------------------------TTATAATATGATT-C-------------------------------TT---CCAAAT------GTCTTT------CATTATACCCTT-----GC-------A------GAGGGTATTATAAAATTGG--TC-----AGATGTTTGT-AACGCACAGAAGGAGACG-TTTCCGACCCCATAAAGTATAA-A--GTATAT
droVir3 scaffold_12240:2693-2921 + AATC---AGT-----TGGA------------------------------------------------------------------------------------------------------------------------CTTAAGTTTC--------------------------------------CAACTGGGG----ATATT--------------------ATGCTTCAAGCATT-------------------------------------------------------------------GGC--------------------------------------------ATCACG----------------------------------------------------------------------------------------AA-----------ATCCAGGAGAGATTGTCC---------------TT------------------------AAACAATTGT------------ATAT-------------------------------------------TTATTAATGGTA------AAATTAAATCGAATAAGTTA---CGCAA-CAGTT------------------T---C--------------------------A------TTATCTACCCTT-----GC-------C------GAGGGTATTATAATTTTGT--CG-----TGTCATGTGT-AACGCATCGAAGGAGACA-TCTCCGACCTTATAAAGTAT------ATATAT
droMoj3 scaffold_6153:356-568 + GACT---AGA-----GTC--------------------------------------------------------------------------------------------------------------------------------------------TTC--------------------------TTACTTGTT----GTATTTGCTTA---------------------------------TGTCCGGTGGCTCGTGCATATTAGTTGTTTTTGGGCGCAAGCCCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------------------------------------------------------------T------AACTGTTTGTG----GT------------------------------G--TG-T-------------------------------------GTTTG-------T------TTTTATACCCTGAACCCATTTTCAATGGGAAATCAGGGTATAATGGTTTTGT--TG-----AAATGTATGT-AACAGGCAGAAGGAGGCG-TGGCAGACCCCACAAAGTAT------ATATAT
droGri2 scaffold_14906:12923903-12924053 + CACATCAAG------TACGA-----------------------------------------------------------------------------------------------------------------------ACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--------CACAACTAAACCAA-----------ACCTA-------------------------------------GG---------------------------------------------------------------------------------------------AGA------AT------------------------ATTAAGTT------------------T-------------------------------AACAATTTGTCTACCTTT-----CA-------A------CAGGGTATTATACTTGTGT--AA-----TGAAGTGTGG-AACGCATTGAAGGAGACT-CGCCCGATTCT-TAAAGTAA------ATATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACTTT---C-----GCCAAGA-CGAG-------------------------------------------------------CGC------GGTTTACAATCCCATCGTATA---TGGA-----------ATCAGGTGAGTAGA-------AAA-----TTC--------------------------TTACTAGGG----ATCTTCGTTTA------------------------------------------------------------------------------------CATAG--CCTTGACCTACA---------------CGT--------------------------------------------------------CGAATG------------------------------AGTA-------------------------------------------ATTTTTC---------------GC------------------------AAACTATAG---------------------------------------------------T------AGCTATTTATGAGA------GT------------------------AT---------------------------------------------T-----TG---ATAGATGTTTATAGCCTT-----AC-------A------GAGGGTATTATAATTTTGG--TC-----AAAAGTGTGC-AACGCAGTGAAGGAGACA-TCTCCGACCCTATAAAGTAT------ATATATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AACGCAGTGAAGGAGACA-TCTCCGACC.......................28201.55310310000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-AACGCAGTGAAGGAGACA-TC..............................23201.50300300000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGG--TC-----AAAAGTGTGC-AACGCA.............................................26200.255005000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-------A------GAGGGTATTATAATTTTGG--TC-----..............................................................24200.102011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-AACGCAGTGAAGGAGA...................................19200.102200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTTGG--TC-----AAAAGTGTGC-AACGC..............................................27200.051001000
droBip1
TCCTC---T-----GGCAAGA-TTGA-------------------------------------------------------AGA------GGCCAAAAATGCCGTGTGAAC---TGAA-----------ATTAGAAATGTATA--T----AAA-----TTA--------------------------TTAAAATTTATGAAATTTCCTATG----------------------------GCTTATACCTAACGTCAAT-----------CAATTT----------------------------------------------------------------------------TGGTAAAAATA-----------------------------------AACCAATTTTATGGGCGTTTGAAAAAAAAT------------------------------------------------------------------------------------------------------------------------TG--------------------------------------AC-------------------------------------------AT-TTT-T------------------T---CCCT-----------------------T------TTTTATACCCTT-----GC-------A------GAGGGTATTATAATTTTGG--TC-----AAAAGTGTGC-AACGCAGTGAAGGAGACA-TCTCCGACCCTATAAAGTAT------ATATATSizeHit CountTotal NormTotal
No Reads
droKik1
GTATA---CG-----TGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGGTAAACAAATA----TT---------CAAAGTAAAAAACTTTACTCAAAATAAC----------------------------------------------------------------CTCAACATATA---------------ACCAAA-----AA----------------------------------------------------------------------------------AAT------------------------------------------------------------------------------------------------------------------------TG--------------------------------------ACTATTTGAA----GA------------------------------A--AA-TATTTGCCACA---GAGCT--------CGGTT------------------TTATAATATTTATACCCTT-----GC---------------AGGGTATTATAATTTCAG--TC-----AGAAGTTTGC-AACGCAGTGAAGGAGACG-TTTCCGACCCTATAAAGTAT------ATATATSizeHit CountTotal NormTotal
No Reads
droFic1
TAAG---AAA-----TTCTGA-TTTT------TGCTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--CCTTCACTTAGA---------------TCTGAA-----TG----------------------------------------------------------------------------------TGT--------CAAATTTTTGCAAA-----------AAATA-------------------------------------GGTAT-----------------------------------------------------------------------------------------------------------------------------AG--TGTT------------------C---CACT-----------------------T------TTTTATACCCTT-----GC-------AGAGCA-AAGGGTATTATAATTTTGG--CC-----AGAAGTTTGC-AACGCAGTGAAGGAGACA-CCTCAGACCCCATAAAGTAT------ATATATSizeHit CountTotal NormTotal
No Reads
droEle1
GCCT---AGA-----CAGGGA-TGAG------CCCCTTT-------------------------------------------------------CAT----TCATTATTTA---TGGT-----------ATCGCTATAGCTAA-------ATC-----TTTTTTACAGTTCTCTTCGTGTAAATAA-AAACAAACA----TT---------TAGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAAATAATTTCCGAGGCGTTTAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------T------AA------ATGTAA------GC------------------------ATCCAATT------------------T---CATA-----------------------T------TTTTATACCCTT-----GC-------A------GAGGGTATTACAGTTTCTG--TC-----AGAAGTTTGC-AACGCAGTGAAGAAGATA-TCTCCGACCCTATAAAGTAT------ATATATSizeHit CountTotal NormTotal
No Reads
droRho1
AGTGC---GG-----TTTA-----------------------------------------------------------------------------TAAT-----------------------------------------------TCAGACAAAGA--------------------------------GTATGG----ATCTT------------------------------------------------------------------------------------ATAATATGAAG--TATTGAATTACA---------------------------------------------------ATTACTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTTTTCATAATT-------------------------------------------ATTATTAATA------AATTAATACTGCATTTTTTA--------------------------------ATACTGCCTTT---CGATAT-T-----TCT-T------AATTATACCCTT-----GC-------A------GAGGGTATTATAATTTTGG--TC-----AAAAGTGTGC-AACGCAGTGAAGGAGACG-TTTCTGACCCTATAAAGTAT------ATATATSizeHit CountTotal NormTotal
No Reads
droBia1
ACTTT---T-----AACGAGGT--------------------------------------------------------------AAGCGGA---------------C---GTG----------------------------------GC--------------------------------------GATCGCGCA----CTATC--------------------AACGTACAAAAGTT-------------------------------------------------------------------CTG--------------------------------------------ATATCGAAAATTGTGACGAATGATTCTTGTTTATTC------------------------------------------------------------GACTAAATAAATA---------CTCTTTCACCGTTGCATTATTTGTTTATAA-----------------------------------------------------------------------------------------------------------------------------TTATTAAT-TAT----------------------------------------TTTCATTTTACT------TCTTTTGCCCTT-----GC-------A------GAGGGTATAATGATATTAT--TT-----AGAAGTTTGC-AGCGCAGTGAAGGAGACG-ATTCCGACCTCATGAAGAATACGAGTATATATSizeHit CountTotal NormTotal
No Reads
droTak1
GCAAT---C-----CA--------------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGATCCACTCAGAAA--AATAATAGATTCGTTTAAATATTTTGAATCTATTTGAAGAGATTTAAAGATGGTTGGTAAACTAGGTATACATTAAAAAA-----------------------TTTTAAAT-CAT-T------------------T---TCTT-----------------------T------CTTTATACCCTT-----GC-------A------GAGGGTATTATGATTTCAG--TC-----AGAAGTTTGC-AACGCAGTGAAGGAGACG-TTTCCGACCCCATAAAGTAT------ATATATSizeHit CountTotal NormTotal
No Reads
droEug1
CATTT---G------CAAAAA-CAAGAAAGGTAATTTTATATAAATTTATAAGTAGTCAAATTTTTTCTGGGGGAATTCATTTA------TCTGACCTACCGACTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATTG------------------------------GGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------T------TATTATATTCGCCAAGCGT-------AGGATAAAATGGTATACTATATCCCT--TG-----GCAAT--TACAAATTGGTAGAAGGAAGCTTTCCCCGACCCTGTTGAATGT------ATATAASizeHit CountTotal NormTotal
No Reads
dm3
AAAT---AAA-----TAGGA-----------------------------------------------------------------------------------------------------------------------------------AA-----TGA--------------------------TTAATTTTG----ATTTTAGTTTG----------------------------ATTAAAATCTAACGACTAC-----------------------------------------CTGC-------------------------CATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTTTCAACATAATTGA------AAATATTAAAA----AGAAATT------------------------AT--TG-T------------------T---TCTA-----------------------T------ATTTATACCCGTTACTCGT-------AGATTAAGTGGTTATACTAGATTCGT--TC-----AAA----TGT-AACAGGCAGAAGGAAGCG-TTTCCGACCATATAAAGTAT------ATATATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACCATATAAAGTAT------ATA...20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCG-TTTCCGACCATATAAAGTA.............23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCG-TTTCCGACCATATAAAG...............27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-AACAGGCAGAAGGAAGCG-TTTCCGA.........................28200.0510000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAATT---C-----TATTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT---------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTGATG-----------------------------------GTATTGTTTTACAAGCAACTTAAAATAAATTATAATTC--------------AGTTAAATAAA--------------------------------------------TAT-----------------------------------------------------------------------------------------------------------------------------AT--TTTA------------------CCGCTCGA-----------------------T------TTTAATACCCGTTACTCAT-------AGGTTAAAAGGGTATACTAGA-TCGT--CG-----AAAAGTATGT-AACAGGTAGAAGGAAGCG-TTTCCGACCATATAAAGTAT------ATATATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGA.....................................242014.5029000000040383231001589000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-AACAGGTAGAAGGAAGCG-TT..............................252014.052810005000352965001470000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGAA....................................251811.612090000001334273601251000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-AACAGGTAGAAGGAAGCG-T...............................242010.902180061005260352011240000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGAAG...................................26167.631220000002351101064000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGAAGC..................................27164.5673000200010040624000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGG......................................23202.85570000003130121361000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-AACAGGTAGAAGGAAGCG-................................23202.75550000200022660190000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGAAGCG-................................28141.1416000000001000141000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGAAT...................................26201.1022000000120000163000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGA-TCGT--CG-----AAAAA.........................................................2111.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGA-TCGT--CG-----AAAAGT........................................................2411.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACTAGA-TCGT--CG-----AAAAGTA.......................................................2411.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGA-TCGT--CG-----AAA...........................................................2511.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGT.....................................24201.0020000000000100181000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TCGT--CG-----AAAAGTATGT-AACAGGTAGA.........................................2711.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGA-TCGT--CG-----AAAAG.........................................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT--CG-----AAAAGTATGT-AAC................................................1931.00300003000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGA-TCGT--CG-----AAAAGT........................................................2511.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGA-TCGT--CG-----AAAAG.........................................................2811.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGA-TCGT--CG-----AAAAGTATG.....................................................2711.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-AACAGGTAGAAGGAAGCG-TT..............................23200.7014000000000300110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAG.......................................22200.601200000000103080000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-AACAGGTAGAAGGAAGC..................................22200.5511000000000010001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGAAGT..................................27200.551100000000000047000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-AACAGGTAGAAGGAAGCG-TTT.............................24200.501000000000100072000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-AACAGGTAGAAGGAAGCG-TTTC............................25180.39700000000001051000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGAAGCG-T...............................29140.36500000000100013000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-AACAGGTAGAAGGAAGCG-TTT.............................26200.35700020002020001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGAAGCG-TT..............................30140.29400000021100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----AAAAGTATGT-AACAGGTAGAAGGA.....................................25160.25400000000000040000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGAAGA..................................27200.20400000000000022000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-AACAGGTAGAAGGA.....................................19200.20400000000004000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-AACAGGTAGAAGGAAGCG-TTTCC...........................26160.19300000000000021000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGT-AACAGGTAGAAGGAAGC..................................26190.16300000000000030000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACAGGTAGAAGGAAGCG-TTTCCG..........................25130.15200000000000020000
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACAGGTAGAAGGAAGCG-TTTC............................23200.15300000000000030000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----AAAAGTATGT-AACAGGTAGAAGGAA....................................26150.13200000000000020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACAGGTAGAAGGAAGCG-TTTCC...........................24180.11200000000001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGT-AACAGGTAGAAGGAAGCG-T...............................25200.10200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGT-AACAGGTAGAAGGAAGCG-TT..............................24200.10200010000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-AACAGGTAGAAGGAAGCG-A...............................24200.10200000000000011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-AACAGGTAGAAGGAAG...................................21200.10200000001001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGT......................................23200.10200000000000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGT-AACAGGTAGAAG.......................................21200.10200000000200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACAGGTAGAAGGAAGCG-TTTCCGA.........................26120.08100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAGAAGGAAGCG-TTTCCGACCATA....................27120.08100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAAGGAAGCG-TTTCCGAC........................22160.06100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACAGGTAGAAGGAAGCG-TTTCCGT.........................26170.06100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----AAAAGTATGT-AACAGGTAGAAGG......................................24170.06100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGT-AACAGGTAGAAGGAAGCG-TTTC............................26180.06100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGGAAGCG-TTTCCGACC.......................22200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGAG....................................25200.05100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGT............................................17200.05100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACAGGTAGAAGGAAGCG-TTA.............................22200.05100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGTAGAAGGAAGCG-TTTCC...........................23200.05100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGT-AACAGGTAGAAGGAA....................................23200.05100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGTAGAAGGAAGC..................................17200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGT-AACAGGTAGAAGGA.....................................23200.05100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACAGGTAGAAGGAAGCG-TT..............................21200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAA........................................21200.05100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGTAGAAGGAAGCG-TT..............................20200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGT-AACAGGTAGAAGGC.....................................24200.05100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACAGGTAGAAGGAAGCG-TTT.............................22200.05100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGT-AACAGGTAGAAGGAAGCG-TC..............................25200.05100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-AACAGGTAGAAGGAAGCG-TTTCA...........................26200.05100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGT-AACAGGTAGAAGGAAGC..................................24200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGT-AACAGGTAGAAGGAAGCG-TT..............................27200.05100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGT-AACAGGTAGAAGGAAGCG-T...............................26200.05100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AACAGGTAGAAGGAAGCG-TTT.............................23200.05100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCG-TTTCCGACCATATAAAGTAT------ATA...27200.05100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-AACAGGTAGAAGGAAGCG-TTA.............................24200.05100000000000010000
droSec2
TCACA---TA-----GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTGAGATAAGTTTCACGAAACACAT---------------------------------------------------T------TCCT---------------------------------------------------------------------------T-TTTTTTTATAT-T-----TC---ATAAATTTTTATACCAGTTACTCGT-------ATA-TGGTAGGATATACTAAATTCGT--TA-----AAAAGTATGT-AACAGGCAGAAGAAGGTG-TTTCCGACTATATAAACTAT------ATATATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGT--TA-----AAAAGTATGT-AACAGGCAGA.........................................2790.1111000
droYak3
TGGGA---CC-----TGGAGA-A--------------------------------------------------------------------------------------------------------------------TATA-------AAAGAAAT--A--------------------------CCTTTAGGG----ACCTA------------------------------------------------------------------------------------TTAATACCTAT--TCTTGGAAAACATTTCGATTCATTACTATGGGAAGACTTTGGG-----TAACTTTCTAAAGCCCTTAAAGCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA-----------------------T------TTTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAGATTCGT--TG-----AAAAGTATGT-AACAGGCAGAAGGAAGCG-TTTCCGACCATATAAAGTAT------ATATATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCG-TTTCCGACCA......................26201.3026026000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT-------AGAGTAAAAGGGTATACTA..............................................................................23200.35700000070000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-AACAGGCAGAAGGAAGCG-TT..............................23200.10200020000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGT-AACAGGCAGAAGGAAGCG-TT..............................26200.10200000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGT--TG-----AAA...........................................................27200.10200200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGT--TG-----AAAAGTATGT-AAC................................................21200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGT-AACAGGCAGAAGGA.....................................21200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT-------AGAGTAAAAGGGTATACTAGA............................................................................24200.05100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACAGGCAGAAGGAAGCG-TT..............................21200.05101000000000
droEre2
ACCTT---CA-----TCCAAA-GT-------------------------------------------CTAGCACCGCTGAACTC------GGCGGCCAATCCGCTGATCTA---TT---------------------------------------------------------------------------------------------------------------------------GCC-------------------------------------------------------TCT--TC------T-----------------CATCGCAAGTCTT---------------------------------------------------------------------------------------------------------------------------------------TC---------------GCACACTAAGGTAA-----------------------------------------------------------------------------------------------------------------------------AT--TG-A-------------------------------------GCCTG-------T------TTTTATACCCCTTACTCGT-------AGAGTAAAAGGGTATACTAGACTTGT--TG-----AAAAGTATGT-AACAGGCAGAAGGAAACA-TTTCCGACTATATAAAGTAT------ATATATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGT-AACAGGCAGAAGGA.....................................18200.0510001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGT-------AGAGTAAAAGGGT....................................................................................18200.0510000010
dp5
TCCGT---T-----GAATA--------------------------------------------------------------------------------------------------------------------------GTTATGGC--------------------------------------TAACTAAGA----CTCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTGCCCACATATTTTTATCCCA-------------------------------------TTGAT----GA------------------------------A--TA-AATTTTCTACAAGATTGGC--------TGGTT---TTGAGTCC-------T------TGTTATACCCGATACTCCA-----AAT-----GAGGGGTATATTAGATTTGTGATAAAAGTGGATGTGTGT-AACGTCCTGAAGGAATCG-TTTCCGACCCCATAAAGTAT------ATATATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTGTG.....................................................2353.20160500002540
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTGT......................................................2251.6080300000230
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGT-AACGTCCTGAAGGAATC..................................25120.5060600000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTG.......................................................2150.4020100001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGT........................................................2050.4020000000020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGATGTGTGT-AACGTCCTGAAGGA.....................................2830.3310100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAATCG-TTTCCGACCC......................2190.3330300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG-TTTCCGACCCCATAAAGTAT------ATAT..27200.3060600000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATAAAAGTGGATGTGTGT-AACG...............................................2640.2510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATAAAAGTGGATGTGTGT-AACGT..............................................2740.2510000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTGTGT-AACGT..............................................2940.2510000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTGTGT-AAC................................................2740.2510000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGATAAAAGTGGATG.........................................................2050.2010000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAAGTGGATGTGTGT-AA.................................................2150.2010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGATAAAAGTGGA...........................................................2050.2010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTGTGT-A..................................................2550.2010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGATAAAAGTGGATG.........................................................2650.2010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAAAGTGGATGTGTGT-A..................................................2050.2010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTGGATGTGTGT-AACG...............................................2250.2010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTGGATGTGTGT-AACGT..............................................2350.2010000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATAAAAGTGGATGTGTGT-...................................................2250.2010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAAAAGTGGATGTGTGT-...................................................2450.2010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGATAAAAGTGGATG.........................................................2350.2010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAAAGTGGATGTGTG.....................................................1950.2010000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGATAAAAGTGGATGTGT......................................................2150.2010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGT-AACGTCCTGAAGGAATCG-................................26120.1720200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATAAAAGTGGATGTGTGT-AAA................................................2580.1310100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGAAGGAATCG-TTTCCGACCC......................2580.1310100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAATCG-TTTCCGACCCCATAAA................2790.1110100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAATCG-TTTCCGACCCCATAA.................2690.1110010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-TTTCCGACCCCATAAAG...............19200.1020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGT-AACGTCCTGAAGGAATCG-T...............................27120.0810100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGT-AACGTCCTGAAGGAA....................................23130.0810100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGT-AACGTCCTGAAGG......................................20130.0810100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGAAGGAATCG-TTTCCGACC.......................24140.0710100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCTGAAGGAATCG-TTTCCGACC.......................25140.0710100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAATCG-TTTCCGACC.......................20150.0710100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCCTGAAGGAATCG-TTTCCGACA.......................26170.0610100000000
droPer2
TGGA---AAATTTTCACAAGGG--------------------------------------------------------------CAAAGTC---------------C---GCG----------------------------------------------------------------------------------------------ATGA----------------------------------------------A-----------------------------------------ATGCCGAGATCTCCA---------------C--A-------------------------------------------------------CGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCT--------TAGTT----------T-------T------TTTTATACCCGATACTCAA-----AATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGT-AACGTCCAGAAGGAATCG-TTTCCGACCCTATAAAGTAT------ATATATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTG.......................................................20202.65530000053
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGT-AACG...............................................28200.306000006
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTG.....................................................19200.153000003
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGT-AACGTC.............................................28200.102000002
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGTGTGT-AACGTC.............................................18200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCG-TTTCCGAC........................24200.051000001
droWil2
TTAA---AAA-----GCT------------------------------------------------------------------TACCGCA---------------T---ATGCTGACCTTACTTGAGGATTAA-----------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTAAATTTTATTTCAAAGGCACTGACAGAGCTAGATTAACTAGTCGAACG------------------------------AGCAACAATTG--------------TA------------------------TTC---------------AC------------------------TAAATATTC---------------------------------------------------C------AACTTTTTCTT------------------------TTATAATATGATT-C-------------------------------TT---CCAAAT------GTCTTT------CATTATACCCTT-----GC-------A------GAGGGTATTATAAAATTGG--TC-----AGATGTTTGT-AACGCACAGAAGGAGACG-TTTCCGACCCCATAAAGTATAA-A--GTATATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-C-------------------------------TT---CCAAAT------GTCTTT------CATTATACC..................................................................................................................2511.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATTGG--TC-----AGATGTTTGT-AACG...............................................25200.7515000150
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACG-TTTCCGACCCCATAAAGT..............23200.10200020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATTATAAAATTGG--TC-----AGA...........................................................23200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTATAAAATTGG--TC-----AGATGTT.......................................................25200.05100010
droVir3
AATC---AGT-----TGGA------------------------------------------------------------------------------------------------------------------------CTTAAGTTTC--------------------------------------CAACTGGGG----ATATT--------------------ATGCTTCAAGCATT-------------------------------------------------------------------GGC--------------------------------------------ATCACG----------------------------------------------------------------------------------------AA-----------ATCCAGGAGAGATTGTCC---------------TT------------------------AAACAATTGT------------ATAT-------------------------------------------TTATTAATGGTA------AAATTAAATCGAATAAGTTA---CGCAA-CAGTT------------------T---C--------------------------A------TTATCTACCCTT-----GC-------C------GAGGGTATTATAATTTTGT--CG-----TGTCATGTGT-AACGCATCGAAGGAGACA-TCTCCGACCTTATAAAGTAT------ATATATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................C--------------------------------------------ATCACG----------------------------------------------------------------------------------------AA-----------ATCCAGGAGAGATTGTC......................................................................................................................................................................................................................................................................................................................................................2631.675002011000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................C--------------------------------------------ATCACG----------------------------------------------------------------------------------------AA-----------ATCCAGGAGAGATTGTCC---------------......................................................................................................................................................................................................................................................................................................................................2731.334000001100000000000000000000000000000001100000000000000000000000
....................................................................................................................................................................................................................................................................................................................C--------------------------------------------ATCACG----------------------------------------------------------------------------------------AA-----------ATCCAGGAGAGATTGT.......................................................................................................................................................................................................................................................................................................................................................2530.672000001000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GC--------------------------------------------ATCACG----------------------------------------------------------------------------------------AA-----------ATCCAGGAGAGATTG........................................................................................................................................................................................................................................................................................................................................................2530.331001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................C--------------------------------------------ATCACG----------------------------------------------------------------------------------------AA-----------ATCCAGGAGAGATTG........................................................................................................................................................................................................................................................................................................................................................2430.331000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................C--------------------------------------------ATCACG----------------------------------------------------------------------------------------AA-----------ATCCAGGAGAGAT..........................................................................................................................................................................................................................................................................................................................................................2230.331000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AACGCATCGAAGGAGACA-TCTCCGACC.......................2940.251001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACGCATCGAAGGAGACA-TCTCCGACC.......................2840.251000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTA------AAATTAAATCGAATAAGTT..................................................................................................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
droMoj3
GACT---AGA-----GTC--------------------------------------------------------------------------------------------------------------------------------------------TTC--------------------------TTACTTGTT----GTATTTGCTTA---------------------------------TGTCCGGTGGCTCGTGCATATTAGTTGTTTTTGGGCGCAAGCCCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------------------------------------------------------------T------AACTGTTTGTG----GT------------------------------G--TG-T-------------------------------------GTTTG-------T------TTTTATACCCTGAACCCATTTTCAATGGGAAATCAGGGTATAATGGTTTTGT--TG-----AAATGTATGT-AACAGGCAGAAGGAGGCG-TGGCAGACCCCACAAAGTAT------ATATATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................CTCGTGCATATTAGTTGTTTTTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.331100000
...........................................................................................................................................................................................................................................................TGGCTCGTGCATATTAGTTGTTTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.331100000
...............................................................................................................................................................................................................................................................TCGTGCATATTAGTTGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331100000
..................................................................................................................................................................................................................................................................TGCATATTAGTTGTTTTTGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.331100000
......................................................................................................................................................................................................................................................TCCGGTGGCTCGTGCATATTAGTTGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.331100000
...............................................................................................................................................................................................................................................................TCGTGCATATTAGTTGTTTTTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.331100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAATCAGGGTATAATGGT............................................................................23200.102200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------T------TTTTATACCCTGAACCCA.........................................................................................................22200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATAATGGTTTTGT--TG-----AAATGT........................................................24200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAATCAGGGTATAATGGTTTT.........................................................................26200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTGAACCCATTTTCAA..................................................................................................20200.051001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGT-AACAGGCAGAAGGAG....................................22200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAGGCG-TGGCAGACC.......................23200.051000010
droGri2
CACATCAAG------TACGA-----------------------------------------------------------------------------------------------------------------------ACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGT--------CACAACTAAACCAA-----------ACCTA-------------------------------------GG---------------------------------------------------------------------------------------------AGA------AT------------------------ATTAAGTT------------------T-------------------------------AACAATTTGTCTACCTTT-----CA-------A------CAGGGTATTATACTTGTGT--AA-----TGAAGTGTGG-AACGCATTGAAGGAGACT-CGCCCGATTCT-TAAAGTAA------ATATATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:23 PM