ID:

dan_403

 Coordinate:

scaffold_12911:2660471-2660714 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-64.1 -63.9 -63.9

Flybase annnotation

exon [dana_GLEANR_7566:2]; CDS [Dana\GF23034-cds]; exon [dana_GLEANR_7566:1]; CDS [Dana\GF23034-cds]; intron [Dana\GF23034-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTGCCGCGGCCGAGCAGTACAAAAACCAGGGAAACGATTTGCTAAAAAGTAAGTAGCTGCCCCAATGGCATCCCTTGCTCCTTTTGCTTATTTGTTAGGGAGTGAAGTGCACTTTCATACCCATTTAGAAGATTTGGTGTCGGAGGTGCCCCTTTCAACATAACCTTAAAACAGAGAAAGAGACTGAAACTATCACTGTGTGATAATTTACAAGTCTTCGACTCCGGGGGCTCATGTGGGTATAATTAGTATTATTAATGACCCGTCGGGTCTCCACTCTATCTCCGCACAGCCAAGGAATTTACGAAAGCTATCGACATGTACTCCAAAGCCATAGAACTG
**************************************************....((((.((((.....)))).......((((((..((......)).))))))(((((.(((((((((((((.((((...))))..))))).))))))))...)))))................(((...((((((((((.((((((...)))))).))).)).)))))...))).((((((((...(((((...((((((...)))))).)))))..))))))))...))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V105
male body		 V055
head
 V039
embryo
 V106
head
....................................................................................................................................................................................................................................................TAATTAGTATTATTAATTACC............................................................................... 21 1 1 5.00 5 5 0 0 0 0 0
.....................................................................................................................................................................................................................................................AATTAGTATTATTAATTACC............................................................................... 20 1 1 5.00 5 5 0 0 0 0 0
..................GTACAAAAACCAGGGAAACGATT............................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0
..................GTACAAAAACCAGGGAAACG.................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................AGGAAAGTTATCGACATGGAC.................. 21 3 1 1.00 1 0 0 0 1 0 0
......................................................................................................................................................................................................................................................ATTAGTATTATTAATTACC............................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................TAATTAGTATTATTAACGACC............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GGTGTCCCCTCTATCTCCGCTCA................................................... 23 3 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................................................................ATTAGTATTATTAATCACC............................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................TAATTAGTATTATTAATCACCA.............................................................................. 22 2 2 1.00 2 2 0 0 0 0 0
....................................................................................................................................................................................................................................................TGATTAGTATTATTAATCACC............................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
.................AGTACAAAAACCAGGGAAACGATT............................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................CATGTACTCCAAAGCCATA...... 19 0 1 1.00 1 0 0 0 0 1 0
....................................................................................................................................................................................................................................................................................................AACCAAGGAATTTACGAAAGCT.............................. 22 1 1 1.00 1 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................AATTAGTATTATTAATGAC................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AGCGACATGTACTCCAAAGCC......... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................TAATTAGTATTATTAATTAACC.............................................................................. 22 2 5 0.40 2 2 0 0 0 0 0
............................................................................................................................................................................................................................................TGGGGGTATAATTCGTATTTT....................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................AATTAGTATTATTAATTAC................................................................................ 19 1 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................AATTAGTATTATTAATTACCA.............................................................................. 21 2 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................AATTAGTATTATTAATTAACC.............................................................................. 21 2 5 0.20 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................AAGGGTTCGACTCCGGAGGC............................................................................................................... 20 3 7 0.14 1 0 0 0 1 0 0
..............AGCAGAACGGAAACCAGGGA...................................................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0
.............................................AAAAAGTAACAAGCAGCCCCA...................................................................................................................................................................................................................................................................................... 21 3 10 0.10 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................TAATGACGGGCCGGGTCTC.................................................................... 19 3 13 0.08 1 0 0 0 1 0 0
....................................................................................................................................................................................................................................................TACTTAGTATTATTAATTAACC.............................................................................. 22 3 13 0.08 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................AAAGCTAAAGACATGTAGTC................ 20 3 15 0.07 1 1 0 0 0 0 0
...............................................................................................GTAGGGGAGTGAAGTGCAGT..................................................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................AAGGAATTTACGGAAGGT.............................. 18 2 20 0.05 1 0 0 0 0 0 1
......................................................................................................................................................................................................................ACTCTTCGGCTCCGGGTGC............................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

AAAACGGCGCCGGCTCGTCATGTTTTTGGTCCCTTTGCTAAACGATTTTTCATTCATCGACGGGGTTACCGTAGGGAACGAGGAAAACGAATAAACAATCCCTCACTTCACGTGAAAGTATGGGTAAATCTTCTAAACCACAGCCTCCACGGGGAAAGTTGTATTGGAATTTTGTCTCTTTCTCTGACTTTGATAGTGACACACTATTAAATGTTCAGAAGCTGAGGCCCCCGAGTACACCCATATTAATCATAATAATTACTGGGCAGCCCAGAGGTGAGATAGAGGCGTGTCGGTTCCTTAAATGCTTTCGATAGCTGTACATGAGGTTTCGGTATCTTGAC
**************************************************....((((.((((.....)))).......((((((..((......)).))))))(((((.(((((((((((((.((((...))))..))))).))))))))...)))))................(((...((((((((((.((((((...)))))).))).)).)))))...))).((((((((...(((((...((((((...)))))).)))))..))))))))...))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 M058
embryo
 V105
male body		 M044
female body
 V039
embryo
............................................................................................................................................................................................................................................................................GTCCAGAGGTGAGATACAGG........................................................ 20 2 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................TTTGTCTCTTTTTCTGACT........................................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0
........................TTTGGTCCCTTAGTTCAACGAT.......................................................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................................................................................................CCCCAATACACCCATAATAAT.............................................................................................. 21 3 3 0.33 1 0 1 0 0 0
........................................................................................................................................................................ATTCTGTCTCTTTTTCTGACT........................................................................................................................................................... 21 2 3 0.33 1 0 0 1 0 0
..................................................................................................................................................CCACTGGGATAGTTCTATTG.................................................................................................................................................................................. 20 3 8 0.25 2 0 2 0 0 0
...........................................................................................................................................................................TCGTCTCTTTTTCTGACT........................................................................................................................................................... 18 2 16 0.06 1 0 0 0 1 0
................................................................................................................................................................................................................................................CCATTTTAATCAAAATAAGTA................................................................................... 21 3 19 0.05 1 0 0 0 0 1
.........................................................................................................................................................................TTTTCTCTCTTTTTCTGACT........................................................................................................................................................... 20 2 20 0.05 1 0 0 0 1 0
..........................................................................................................................................................................................................................................................................CAGCCCAAAGGGGAGA.............................................................. 16 2 20 0.05 1 1 0 0 0 0
......................................................................CTAGGGAACGAGGGAAA................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12911:2660421-2660764 - dan_403 TTTTGCCGCGGCCGAGCAGTACAAAAACCAGGGAAACGATTTGCTAAAAAGTAAGTAGCT--------GCCCCAATGGCATCCC-TTGCT-----------------------CC-----------------------------------------TTTTGCTTATTTGTTA-----G--G-------GAGTGA-AGTGCAC-------TTTCAT--------------------------A--CCCATTTAGAAGATT---------TGGTGT---CG-GAGGTGCCC---CTTTCAACATAACCTTAAAA----------CAGA--GAAAGAGACTGAAACTATCACTG--T--G-TGA---TAATTTACAAGTCTTCGA-CTC--------CGGGGG-----------------------------------------CTCATGTGGG---TATAATTAGTATTATTAATGA------CCCGTCG-GGTCTCC---AC---------TCTATCTC------CGCACAGCCAAGGAATTTACGAAAGCTATCGACATGTACTCCAAAGCCATAGAACTG
droBip1 scf7180000396714:445303-445641 + TTTTGCCGCGGCCGAGCAGTACAAGAACCAGGGAAACGATTTACTAAAAAGTAAGCAAGT--------GCCCCAATGGCATCCC-TTGCT-----------------------CC-----------------------------------------TTTTGTTTATTTGCTAGGA---GTGAAGT-------GCT-------ATTTGA--------------------------------TA--CCCATTTAGAGGATT---------TGGGGT---CC-GA-GTGCCC---CTTTCAACATAACCTTAAAA----------CAGA--GTGAGAGACTGAAACTATCACTG--G--G-TGA---TAATTTACAGGTCTACGA-CTC--------CGGGGG-----------------------------------------ATCATGTGGG---TATAATTAGTATTATTAATGA------GCCGTCT-TGTCTC------TAC-TC--------CTC------CGCGCAGCCAAGGAATTTACGAAAGCTATCGACATGTACACCAAAGCCATAGAACTG
droKik1 scf7180000302639:1542457-1542800 + TTTTGCCGCGGCCGAGCAGTTCAAGAATCAGGGAAACGATTTGCTCAAAAGTAAGTACCG--------CCCCCG----CATCAC-TTGCA-----------------------CCGC--------------------------------------GAT---------GCCCACGCCAGGTGGACA-----------------TCGTGC-AGGCGT------------------CAGCGCCAG--CGCACTCCGGGCGAC-------CCTAGTTT---CG-GA-GGGCCA----CTTCACCCTAACCTTAAAG----------CGGA--GA----TACAGAAGCTATCGCTG--T--G-TGA---TAATTTACAAGTCTTCGG-CCC--------C-GGCCAC---T-------------------T-CCA-----------CTCGA-CGGG---CCTAATTAGTAATA---CTGA------CCGCCTT-CCCCTCC-CC--TCT-CC--------CCA------TGCGCAGCCAAGGAGTTCACAAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
droFic1 scf7180000454104:1273267-1273582 - TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTAACT--------CCGCTG-----ATTAC-TTGGG-----------------------ACGT--------------------------------------AAT---------GGCTGCGATTAGTGGACT-----------------CCAAGTCACCCGC-------------------------AA--CGCATTCCGGGAATT---------CACTTT---CC-GG-GTGCCT---TGTTCAACCTAACCTTAAAA----------CAAA--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTCCC---------------AGAA-----------------------------------------CTCAAGGGGG---TATAATTAGTACTATTACTCA------CCTTCTT-G-------CC--CTT-TC------------------CCACAGCCAAGGAGTTCTCCAAAGCCATTGACATGTACACCAAAGCCATAGAACTG
droEle1 scf7180000491047:66496-66807 - TTTTGCCGCGGCCGAGCAGTACAAAAATCAGGGAAACGCTATGCTCAAAAGTAAGTACCT--------CTGCCG------TTCC-ATATG-----------------------CTGT--------------------------------------AAT---------GCCTACAATTGTTGGACT-----------------GCGT-TAATCCGT-------------------------AA--CGCTTTCCGGGACTG---------CACTTT----C-GA-GTGCCT---CCTTCAACCTAACCTTAAAA----------CAAA--GG--------GAACCTATGGCTGTGT--G-CGA---TAATTTACAAGTCTCCC---------------GGAA-----------------------------------------CTC-TGGGGG---TATAATTAGTACTATTACTGA------CCCGCCT-G-------CC--CCC-TT------------------TCACAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
droRho1 scf7180000777865:354238-354557 + TTTTGCCGCGGCCGAGCAGTACAAAAATCAGGGAAATGATATGCTCAAAAGTAAGTTATT---TTGTTTTGTCC-----ATCAC-TTATG-----------------------CCGT--------------------------------------AAT---------GCCCATGATAAGAGAACT-----------------GCGAGTAACTCGT-------------------------AA--CGCTTTCCGGGACTG---------CACCTT---CC-AA-GTGCCT---CCTTCAACATAACCTTAAAA----------CAAA--GG--------CAATCTATGGCTGTAT--G-TGA---TAATTTACAACTCTCCC---------------GGAA-----------------------------------------CTCA-GGAGG---TATAATTAGTAATATTACTGA------CCCGACT-G-------CC--CTC-TC------------------CCACAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
droBia1 scf7180000302402:3054196-3054514 + TTTTGCCGCGGCCGAGCAGTACAAAAATCAAGGAAATGATATGCTCAAAAGTAAGTACA----CACCTCTGCCC-----ATCAC-TGGGG-----------------------CCGT--------------------------------------AAT---------AGGCGCGATATGTGGACT-----------------GCCAGCAACCCGT-------------------------AA--CGAATTCCGGGAGTG---------CACTTT---CC-GA-GTGGCT---CCTTCGACCTAACCTTAAAA----------CAAA--GG--------CAAACTATGGCTGTGT--G-TGA---TAATTTACAAGTTTCCC---------------GGAA-----------------------------------------CTCATG-GGG---TATAATTAGTACTATTACTCA------CCCTCTG-G-------CC--TTC-TC------------------CCGCAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
droTak1 scf7180000415653:618060-618388 + TTTTGCCGCGGCCGAGCAGTACAAAAATCAGGGAAATGATATGCTCAAAAGTAAGTACCTGCACACCTTTCCCC-----GCTAA-TTAGC-----------------------CCTC--------------------------------------AAT---------GACCGCGATTGGTGGACT-----------------GCCAGTTACCCGT-------------------------AATTCGAATTCCGGGAGTG---------CACTTT---CC-GA-GTGCCCCCCCTTTCAACCTAACCTTAAAA----------CAAA--GG--------CAAACTATGGCTGTGT--G-TGA---TAATTTACAAGTCTCCC---------------GGAA-----------------------------------------CTCATG-GGG---TATAATTAGTAGCATTACTCA------CCCCTGG-C-------AC--TCTCTC------------------CCGCAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
droEug1 scf7180000407136:119045-119361 - TTTTGCCGCGGCGGAGCAATACAAAAATCAGGGAAATGATATGCTCAAAAGTAAGTACCT--------TTGCTC-----GCCAC-TTAAG-----------------------TCAT--------------------------------------TAT---------GACCACAATAAGTAGACT-----------------GCGTGTCACACAT-------------------------AA--CGCATTTAGGGACTG---------CACTTA---CC-AA-GTGCCC---TTTTCGACCTAACCTTAAAA----------CAAA--GG--------CAAACTATGGATGTGT--G-TGA---TAATTTACAAGTCTACC---------------GGAA-----------------------------------------CTCATGGGGG---TATAATTAGTACTCTTACTCA------CACTTTGGG-------TC--TCT-CT------------------CCACAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
dm3 chr3R:5574074-5574383 + TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTACCT--------CTGGCA-----ATCACATAGGC-----------------------CCGT--------------------------------------AAT---------GACCACGATTAGTGTCCT-----------------TCGAGC--------------------------------AA--TCCATTCTGTGAGTG---------CACTTT---AC-CA-GTGCCA---CCTTCAACATAACCTTAAAA----------CAAT--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTGCC---------------GGAA-----------------------------------------CCTATGGGGG---TATAATTATTACCATTACTCA------CCCTTTG-G-------TC--TAT-TT------------------CCATAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
droSim2 3r:15460051-15460360 - TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTACCT--------CTGGCA-----ATCACATTGGA-----------------------CCGT--------------------------------------AAC---------GACCACGATTAGTGTCCT-----------------GCGAGC--------------------------------AA--TCCATTCTGTGAGTC---------CACTTT---CC-CA-GTGC-A---CCTTCAACATAACCTTAAAAA---------CAAT--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTGCC---------------GGAA-----------------------------------------CCTATGGGGG---TATAATTATTACCATTACTCA------CGCTTTG-G-------TC--TAT-TC------------------CCATAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
droSec2 scaffold_0:16330619-16330928 - TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTACCT--------CTGGCA-----ATCACATTGGA-----------------------CCGT--------------------------------------AAC---------GACCACGATTAGTGTCCT-----------------GCGAGC--------------------------------AA--TCCATTCTGTGAGTC---------CACTTT---CC-CA-GTGCCA---CCTTCAACATAACCTTAAAA----------CAAT--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTGCC---------------GGAA-----------------------------------------CCTATGGGGG---TATAATTATTACCATTACTCA------CCCTTTG-G-------TC--TAT-TC------------------CCATAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
droYak3 3R:9621069-9621376 + TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTACTG--------CTGGCA-----ATCAC-TCGGC-----------------------TCGT--------------------------------------AAT---------GACCACGATTAGTGCCCT-----------------GCAAGC--------------------------------AA--CGCATTCTGTGACTG---------CACT-T---CC-GA-GTGCCA---CTTTCAACATAACCTTAAAA----------CAAT--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTGCC---------------GAAA-----------------------------------------CTTATGGGGG---TATAATTAGTACCATTACTCA------CCCTTTG-G-------TC--CAT-TC------------------CCATAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACAGCAAAGCCATAGAACTG
droEre2 scaffold_4770:16030363-16030673 - TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTACCT--------CTGGCA-----ATCAC-CTGGT-----------------------CCGT------------------------------------GGCAT---------GACCACGGTTAGTTGCCT-----------------GTAAGC--------------------------------AA--CCCATTCTGTGACTG---------CACTTT---CC-GA-GTGCCA---CCTTCAACATAACCTTAAAA----------CAAT--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTGCC---------------GAAA-----------------------------------------CCTTTGGGGG---TATAATTAGTACCATTACTCA------CCTTTTG-T-------TT--TAT-TC------------------CCATAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
dp5 2:12512375-12512723 - TTTTGCCGCGGCCGAGCAGTACAAAAATCAGGGAAATGATTTGCTCAAAAGTAAGTGACA---CACTTCAATTT-----ATAAC-ATACA-----------------------CCGT------------------------------------GCCATT---------CCC---------AGATTGCAG--AGAGCATGGAC-------ATCCAT--------------------------A--TGCGTTGCAAAACCA---------TACATT---CC-GA-GTACCT---TTTTCAACCTAACCTGAAAA----------CAGG--AA------CAAAAACTATCACTG--T--G-CTA---TAATTTACAAGTCCCCAAGTTC--------CAAGCGCC---T-------------------A-GCA---------T-ATCATGAGAG---AATAATTAGTAATGTTACTGA------CCCAATT-TCCTTC------GAT-TT--------CCCAACATGTGAACAGCCAAGGAATTTACAAAAGCCATCGACATGTATACCAAAGCCATAGACCTG
droPer2 scaffold_0:7955363-7955711 + TTTTGCCGCGGCCGAGCAGTACAAAAATCAGGGAAATGATTTGCTCAAAAGTAAGTGACA---CACTTCAATTT-----ATAAC-ATACA-----------------------CCGT------------------------------------GCCATT---------CCC---------AGATTGCAG--AGTGCATGGAC-------ATCCAT--------------------------A--TGCGTTGCAAAACCA---------TACATT---CC-GA-GTACCT---TTTTCAACCTAACCTGAAAA----------CAGG--AA------CAAAAACTATCACTG--T--G-CTA---TAATTTAAAAGTCCCCAAGTTC--------CAAGCGCC---T-------------------A-GCA---------T-ATCATGAGAG---AATAATTAGTAATCTTACTGA------CCCAATT-TCCTTC------GAT-TT--------CCCAACATGTGAACAGCCAAGGAATTTACAAAAGCCATCGACATGTATACCAAAGCCATAGACCTG
droWil2 scf2_1100000004902:6265036-6265391 + TTTTGCCGCGGCCGAGCAGTACAAAAATCAAGGAAATGATTTACTGAAAAGTAAGTCGC----------CCCCAA----A---T-GTTCATAA-TTCCTGAAACA----------TCGATGTAGGATGCGGATAGCGAGTTTGGGTGTCAAAAA-GAT---------GTACAAAATATTTTGATA----------TATGTAC-------ATACAT-------------------------------------------A-------CATAGTTG---CG-GA--CG-GA---TTTTCAACATAACCTACAAAAGGTTGAAAACTTA--AA------CAGCAACTATCAATG--G--GTTGA---TAATTTACATGT---------------------------------------------------------------------------------AATTAGT-----TACTCAAAATGACTAATTT-CTCTTCTGTCCCTTT-TCCCATTCAACGC------TTTCCAGCCAAGGAGTTCACGAAAGCCATCGACATGTACACCAAAGCCATAGAACTG
droVir3 scaffold_13047:16000170-16000531 - dvi_17107 TTTTGCCGCGGCCGAGCAGTACAAAAATAAAGGAAATGATTTGCTCAAAAGTAAGTTGT----------CATTC-----ATCAC-ATACACGA-GAAACTAGATA----------------------------------------------------T---------GATTAC-----ATAGTCG-----------------GTAAAGCACATGAAAGACACTAAGAAATTGTATGC---AA--CTCA----------AGAGCGTCCCG--TGTTGTCT-GT-AAGCTG---TCTTCGACCTAACCTTAAAAA---------CAAT-TTA--------CAGGCATTGGCTCTAT--G-TGC---AAATTTGTGTAA-------TTCTTATGTGCT-GTTTAAA--G------------------GG-CAG-----------CT-AA-AAAG---CTTAAATCTGAATGTTAATGT--------AACTA-TGACT-C---AT---------TTCGTCAC------ATTGCAGCCAAGGAATTCTCGAAAGCCATTGACATGTATTCCAAAGCCATAGAACTA
droMoj3 scaffold_6540:19527789-19528178 - TTTTGCCGCGGCTGAGCAGTACAAAAATAAGGGAAATGAATTGCTCAAAAGTAAGTTGT----------CATTT-----GTAAA-ATTGAAATTGAAACAAACTACAATTAGACAGT--------------------------------------TTT---------GATAATGACTGG---CAT-----------------GAAAG-CACATGCAATCTAAAAAGCAGTTGTATGC---AC--CCAC----------AGCGCGTCCCG--TGTTGCTAGTACGTTTTT---TTCTCGACCTAACCTTAAAAA---------CAAT-TGA--------CTAGCAGTGGCGCTAT--G-TGAATATAATTT-------TTAC-------------A-GTAGCT-TTTGAAATTAAAATCTGCATATT-TTAATTGAAACAT-ATAGTTAATG---TCAAATATGTAATCGTAAT---------------------CA---AT---------TCTGTCAT------TTCGCAGCTAAGGAATTCTCGAAAGCCATTGACATGTATTCCAAAGCCATAGAACTT
droGri2 scaffold_14830:4012501-4012875 + TTTTGCCGCTGCTGAGCAGTGCAAAAATAAGGGAAATGATTTGCTCAAAAGTAAGTTGT----------CATTC-----ATCAC-TTACACAA-TTCACTAGATA----------------------------------------------------T---------------TCTCTGTAGTCT-----------------GCAAATCACGCGAAACTCAATGAGAAGCTATGCG------------CAACAGACCCACAGCGTCCCG--TGC---TT-GA--AG-TT---ACTTCGACCTAACCTTAAAA----------CAAATTGA--------CTGGCATTGGCGCTATGTG-AGA---TAATTTGTGAAA-------TTC--------TGTGGGCC---TGCAATCATA--CTGAATATTATCGACTAAAATACAACAATTATTGATATGCAACAAATAAC--------------------A-TGCCACA---AT---------TAAACCGT------TTCACAGCCAAGGAATTTTCGAAAGCCATTGACATGTATTCCAAAGCCATCGAACTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTTTGCCGCGGCCGAGCAGTACAAAAACCAGGGAAACGATTTGCTAAAAAGTAAGTAGCT--------GCCCCAATGGCATCCC-TTGCT-----------------------CC-----------------------------------------TTTTGCTTATTTGTTA-----G--G-------GAGTGA-AGTGCAC-------TTTCAT--------------------------A--CCCATTTAGAAGATT---------TGGTGT---CG-GAGGTGCCC---CTTTCAACATAACCTTAAAA----------CAGA--GAAAGAGACTGAAACTATCACTG--T--G-TGA---TAATTTACAAGTCTTCGA-CTC--------CGGGGG-----------------------------------------CTCATGTGGG---TATAATTAGTATTATTAATGA------CCCGTCG-GGTCTCC---AC---------TCTATCTC------CGCACAGCCAAGGAATTTACGAAAGCTATCGACATGTACTCCAAAGCCATAGAACTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................GTACAAAAACCAGGGAAACGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
..................GTACAAAAACCAGGGAAACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................AGTACAAAAACCAGGGAAACGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACTCCAAAGCCATA......1911.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGTATTATTAATGA------C...................................................................................................1911.001010000
droBip1
TTTTGCCGCGGCCGAGCAGTACAAGAACCAGGGAAACGATTTACTAAAAAGTAAGCAAGT--------GCCCCAATGGCATCCC-TTGCT-----------------------CC-----------------------------------------TTTTGTTTATTTGCTAGGA---GTGAAGT-------GCT-------ATTTGA--------------------------------TA--CCCATTTAGAGGATT---------TGGGGT---CC-GA-GTGCCC---CTTTCAACATAACCTTAAAA----------CAGA--GTGAGAGACTGAAACTATCACTG--G--G-TGA---TAATTTACAGGTCTACGA-CTC--------CGGGGG-----------------------------------------ATCATGTGGG---TATAATTAGTATTATTAATGA------GCCGTCT-TGTCTC------TAC-TC--------CTC------CGCGCAGCCAAGGAATTTACGAAAGCTATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTGCCGCGGCCGAGCAGTTCAAGAATCAGGGAAACGATTTGCTCAAAAGTAAGTACCG--------CCCCCG----CATCAC-TTGCA-----------------------CCGC--------------------------------------GAT---------GCCCACGCCAGGTGGACA-----------------TCGTGC-AGGCGT------------------CAGCGCCAG--CGCACTCCGGGCGAC-------CCTAGTTT---CG-GA-GGGCCA----CTTCACCCTAACCTTAAAG----------CGGA--GA----TACAGAAGCTATCGCTG--T--G-TGA---TAATTTACAAGTCTTCGG-CCC--------C-GGCCAC---T-------------------T-CCA-----------CTCGA-CGGG---CCTAATTAGTAATA---CTGA------CCGCCTT-CCCCTCC-CC--TCT-CC--------CCA------TGCGCAGCCAAGGAGTTCACAAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTAACT--------CCGCTG-----ATTAC-TTGGG-----------------------ACGT--------------------------------------AAT---------GGCTGCGATTAGTGGACT-----------------CCAAGTCACCCGC-------------------------AA--CGCATTCCGGGAATT---------CACTTT---CC-GG-GTGCCT---TGTTCAACCTAACCTTAAAA----------CAAA--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTCCC---------------AGAA-----------------------------------------CTCAAGGGGG---TATAATTAGTACTATTACTCA------CCTTCTT-G-------CC--CTT-TC------------------CCACAGCCAAGGAGTTCTCCAAAGCCATTGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotal
No Reads
droEle1
TTTTGCCGCGGCCGAGCAGTACAAAAATCAGGGAAACGCTATGCTCAAAAGTAAGTACCT--------CTGCCG------TTCC-ATATG-----------------------CTGT--------------------------------------AAT---------GCCTACAATTGTTGGACT-----------------GCGT-TAATCCGT-------------------------AA--CGCTTTCCGGGACTG---------CACTTT----C-GA-GTGCCT---CCTTCAACCTAACCTTAAAA----------CAAA--GG--------GAACCTATGGCTGTGT--G-CGA---TAATTTACAAGTCTCCC---------------GGAA-----------------------------------------CTC-TGGGGG---TATAATTAGTACTATTACTGA------CCCGCCT-G-------CC--CCC-TT------------------TCACAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotal
No Reads
droRho1
TTTTGCCGCGGCCGAGCAGTACAAAAATCAGGGAAATGATATGCTCAAAAGTAAGTTATT---TTGTTTTGTCC-----ATCAC-TTATG-----------------------CCGT--------------------------------------AAT---------GCCCATGATAAGAGAACT-----------------GCGAGTAACTCGT-------------------------AA--CGCTTTCCGGGACTG---------CACCTT---CC-AA-GTGCCT---CCTTCAACATAACCTTAAAA----------CAAA--GG--------CAATCTATGGCTGTAT--G-TGA---TAATTTACAACTCTCCC---------------GGAA-----------------------------------------CTCA-GGAGG---TATAATTAGTAATATTACTGA------CCCGACT-G-------CC--CTC-TC------------------CCACAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotal
No Reads
droBia1
TTTTGCCGCGGCCGAGCAGTACAAAAATCAAGGAAATGATATGCTCAAAAGTAAGTACA----CACCTCTGCCC-----ATCAC-TGGGG-----------------------CCGT--------------------------------------AAT---------AGGCGCGATATGTGGACT-----------------GCCAGCAACCCGT-------------------------AA--CGAATTCCGGGAGTG---------CACTTT---CC-GA-GTGGCT---CCTTCGACCTAACCTTAAAA----------CAAA--GG--------CAAACTATGGCTGTGT--G-TGA---TAATTTACAAGTTTCCC---------------GGAA-----------------------------------------CTCATG-GGG---TATAATTAGTACTATTACTCA------CCCTCTG-G-------CC--TTC-TC------------------CCGCAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotal
No Reads
droTak1
TTTTGCCGCGGCCGAGCAGTACAAAAATCAGGGAAATGATATGCTCAAAAGTAAGTACCTGCACACCTTTCCCC-----GCTAA-TTAGC-----------------------CCTC--------------------------------------AAT---------GACCGCGATTGGTGGACT-----------------GCCAGTTACCCGT-------------------------AATTCGAATTCCGGGAGTG---------CACTTT---CC-GA-GTGCCCCCCCTTTCAACCTAACCTTAAAA----------CAAA--GG--------CAAACTATGGCTGTGT--G-TGA---TAATTTACAAGTCTCCC---------------GGAA-----------------------------------------CTCATG-GGG---TATAATTAGTAGCATTACTCA------CCCCTGG-C-------AC--TCTCTC------------------CCGCAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotal
No Reads
droEug1
TTTTGCCGCGGCGGAGCAATACAAAAATCAGGGAAATGATATGCTCAAAAGTAAGTACCT--------TTGCTC-----GCCAC-TTAAG-----------------------TCAT--------------------------------------TAT---------GACCACAATAAGTAGACT-----------------GCGTGTCACACAT-------------------------AA--CGCATTTAGGGACTG---------CACTTA---CC-AA-GTGCCC---TTTTCGACCTAACCTTAAAA----------CAAA--GG--------CAAACTATGGATGTGT--G-TGA---TAATTTACAAGTCTACC---------------GGAA-----------------------------------------CTCATGGGGG---TATAATTAGTACTCTTACTCA------CACTTTGGG-------TC--TCT-CT------------------CCACAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotal
No Reads
dm3
TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTACCT--------CTGGCA-----ATCACATAGGC-----------------------CCGT--------------------------------------AAT---------GACCACGATTAGTGTCCT-----------------TCGAGC--------------------------------AA--TCCATTCTGTGAGTG---------CACTTT---AC-CA-GTGCCA---CCTTCAACATAACCTTAAAA----------CAAT--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTGCC---------------GGAA-----------------------------------------CCTATGGGGG---TATAATTATTACCATTACTCA------CCCTTTG-G-------TC--TAT-TT------------------CCATAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................AAAAATCAGGGAAATGAAATGCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGGGAAATGAAATGCTCAAAACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCCATCGACATGTACACCAAAGCC.........2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATCAGGGAAATGAAATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGTTCTCCAAAGCCATCG..........................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AAATCAGGGAAATGAAATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGACATGTACACCAAAGC..........2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACCAAAGCCATAGAACTG2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CTGCC---------------GGAA-----------------------------------------CCTATGGGGG---TA.............................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATCGACATGTACACCAAAGC..........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACATGTACACCAAAGCCATAGAAC..2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATCAGGGAAATGAAATGCTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATCAGGGAAATGAAATGCTCAAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................T--G-TGA---TAATTTACAAGTCTGC.........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAGTACCT--------CTGGCA-----AT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
TTTTGCCGCGGCGGAGCAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................AAATCAGGGAAATGAAATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GGAGCAGTACAAAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......CGCGGCGGAGCAGTACAAAAATCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................TCAGGGAAATGAAATGCTCAAAACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AATCAGGGAAATGAAATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........................................................................................................................................................AAT---------GACCACGATTAGTGTCCT-----------------...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
............GGAGCAGTACAAAAATCAGGGAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GG--------CAAACTTTGGCTGTGT--G-...............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGTTCTCCAAAGCCATCGAC........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CT-----------------TCGAGC--------------------------------AA--TCCATTCTGTGAG....................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
..TTGCCGCGGCGGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TACAAAAATCAGGGAAATGAAATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGCGGCGGAGCAGTACAAAAATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGTTCTCCAAAGCCAT............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCAAAGCCATCGACATGTACACC...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACCAAAGCCATAGAACT.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TGTGAGTG---------CACTTT---AC-CA-GT........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CTTTGGCTGTGT--G-TGA---TAATTTA..................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GGGAAATGAAATGCTCAAAACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCCATCGACATGTACACCAAAGC..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..TTGCCGCGGCGGAGCAGTACATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTTTGCCGCGGCGGAGCAGTACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGTTCTCCAAAGCCATCGAC........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................TACAAAAATCAGGGAAATGAAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGCCATCGACATGTACACC...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCAGTACAAAAATCAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGCCATCGACATGTACACCAAAGC..........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TTGCCGCGGCGGAGCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACATGTACACCAAAGCCATAG.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGCAGTACAAAAATCAGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGTTCTCCAAAGCCA.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TCCT-----------------TCGAGC--------------------------------AA--TCCATTCT.........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................ACAAAAATCAGGGAAATGAAATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GGGAAATGAAATGCTCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGTTCTCCAAAGCCATCGAC........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GCCGCGGCGGAGCAGTACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................CAAAAATCAGGGAAATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAGTACCT--------CTGGCA-----ATCACATAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TTGCCGCGGCGGAGCAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCATCGACATGTACAC................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.TTTGCCGCGGCGGAGCAGTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGCGGCGGAGCAGTACAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................ACAAAAATCAGGGAAATGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACCAAAGCCATAGAAC..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................CTCAAAAGTAAGTACCT--------CTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGGGAAATGAAATGCTCAAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGCCGCGGCGGAGCAGTACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AATCAGGGAAATGAAATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droSim2
TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTACCT--------CTGGCA-----ATCACATTGGA-----------------------CCGT--------------------------------------AAC---------GACCACGATTAGTGTCCT-----------------GCGAGC--------------------------------AA--TCCATTCTGTGAGTC---------CACTTT---CC-CA-GTGC-A---CCTTCAACATAACCTTAAAAA---------CAAT--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTGCC---------------GGAA-----------------------------------------CCTATGGGGG---TATAATTATTACCATTACTCA------CGCTTTG-G-------TC--TAT-TC------------------CCATAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.TTTGCCGCGGCGGAGCAGTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCAAAGCCATCGACATGTACACCAA.............2811.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................TTTACAAGTCTGCC---------------GGAA-----------------------------------------CCTATGGGGG---T..............................................................................................................................2911.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAAGCCATAGAACT.1811.00100100000000000000
.....CCGCGGCGGAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000010000000
droSec2
TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTACCT--------CTGGCA-----ATCACATTGGA-----------------------CCGT--------------------------------------AAC---------GACCACGATTAGTGTCCT-----------------GCGAGC--------------------------------AA--TCCATTCTGTGAGTC---------CACTTT---CC-CA-GTGCCA---CCTTCAACATAACCTTAAAA----------CAAT--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTGCC---------------GGAA-----------------------------------------CCTATGGGGG---TATAATTATTACCATTACTCA------CCCTTTG-G-------TC--TAT-TC------------------CCATAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGTTCTCCAAAGCCATC...........................2111.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACATGTACACCAAAGCCA........2011.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGTTCTCCAAAGCCATCGA.........................2311.0010100
droYak3
TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTACTG--------CTGGCA-----ATCAC-TCGGC-----------------------TCGT--------------------------------------AAT---------GACCACGATTAGTGCCCT-----------------GCAAGC--------------------------------AA--CGCATTCTGTGACTG---------CACT-T---CC-GA-GTGCCA---CTTTCAACATAACCTTAAAA----------CAAT--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTGCC---------------GAAA-----------------------------------------CTTATGGGGG---TATAATTAGTACCATTACTCA------CCCTTTG-G-------TC--CAT-TC------------------CCATAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACAGCAAAGCCATAGAACTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TTTTGCCGCGGCGGAGCAGTACAAAAATCAGGGAAATGAAATGCTCAAAAGTAAGTACCT--------CTGGCA-----ATCAC-CTGGT-----------------------CCGT------------------------------------GGCAT---------GACCACGGTTAGTTGCCT-----------------GTAAGC--------------------------------AA--CCCATTCTGTGACTG---------CACTTT---CC-GA-GTGCCA---CCTTCAACATAACCTTAAAA----------CAAT--GG--------CAAACTTTGGCTGTGT--G-TGA---TAATTTACAAGTCTGCC---------------GAAA-----------------------------------------CCTTTGGGGG---TATAATTAGTACCATTACTCA------CCTTTTG-T-------TT--TAT-TC------------------CCATAGCCAAGGAGTTCTCCAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........CGGCGGAGCAGTACAAAAATCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
......................AAAAATCAGGGAAATGAAATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..................GTACAAAAATCAGGGAAATGAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCCAAAGCCATCGACATGTACACC...............2711.0010100000
.TTTGCCGCGGCGGAGCAGTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
.................AGTACAAAAATCAGGGAAATGAAATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
dp5
TTTTGCCGCGGCCGAGCAGTACAAAAATCAGGGAAATGATTTGCTCAAAAGTAAGTGACA---CACTTCAATTT-----ATAAC-ATACA-----------------------CCGT------------------------------------GCCATT---------CCC---------AGATTGCAG--AGAGCATGGAC-------ATCCAT--------------------------A--TGCGTTGCAAAACCA---------TACATT---CC-GA-GTACCT---TTTTCAACCTAACCTGAAAA----------CAGG--AA------CAAAAACTATCACTG--T--G-CTA---TAATTTACAAGTCCCCAAGTTC--------CAAGCGCC---T-------------------A-GCA---------T-ATCATGAGAG---AATAATTAGTAATGTTACTGA------CCCAATT-TCCTTC------GAT-TT--------CCCAACATGTGAACAGCCAAGGAATTTACAAAAGCCATCGACATGTATACCAAAGCCATAGACCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................GTACAAAAATCAGGGAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
TTTTGCCGCGGCCGAGCAGTACAAAAATCAGGGAAATGATTTGCTCAAAAGTAAGTGACA---CACTTCAATTT-----ATAAC-ATACA-----------------------CCGT------------------------------------GCCATT---------CCC---------AGATTGCAG--AGTGCATGGAC-------ATCCAT--------------------------A--TGCGTTGCAAAACCA---------TACATT---CC-GA-GTACCT---TTTTCAACCTAACCTGAAAA----------CAGG--AA------CAAAAACTATCACTG--T--G-CTA---TAATTTAAAAGTCCCCAAGTTC--------CAAGCGCC---T-------------------A-GCA---------T-ATCATGAGAG---AATAATTAGTAATCTTACTGA------CCCAATT-TCCTTC------GAT-TT--------CCCAACATGTGAACAGCCAAGGAATTTACAAAAGCCATCGACATGTATACCAAAGCCATAGACCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACATGTATACCAAAGCC.........2111.001100000
droWil2
TTTTGCCGCGGCCGAGCAGTACAAAAATCAAGGAAATGATTTACTGAAAAGTAAGTCGC----------CCCCAA----A---T-GTTCATAA-TTCCTGAAACA----------TCGATGTAGGATGCGGATAGCGAGTTTGGGTGTCAAAAA-GAT---------GTACAAAATATTTTGATA----------TATGTAC-------ATACAT-------------------------------------------A-------CATAGTTG---CG-GA--CG-GA---TTTTCAACATAACCTACAAAAGGTTGAAAACTTA--AA------CAGCAACTATCAATG--G--GTTGA---TAATTTACATGT---------------------------------------------------------------------------------AATTAGT-----TACTCAAAATGACTAATTT-CTCTTCTGTCCCTTT-TCCCATTCAACGC------TTTCCAGCCAAGGAGTTCACGAAAGCCATCGACATGTACACCAAAGCCATAGAACTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............GAGCAGTACAAAAATCAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACATGTACACCAAAGC..........2011.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACACCAAAGCCATAGA....2011.00100010
...TGCCGCGGCCGAGCAGTACAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
............CGAGCAGTACAAAAATCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
TTTTGCCGCGGCCGAGCAGTACAAAAATAAAGGAAATGATTTGCTCAAAAGTAAGTTGT----------CATTC-----ATCAC-ATACACGA-GAAACTAGATA----------------------------------------------------T---------GATTAC-----ATAGTCG-----------------GTAAAGCACATGAAAGACACTAAGAAATTGTATGC---AA--CTCA----------AGAGCGTCCCG--TGTTGTCT-GT-AAGCTG---TCTTCGACCTAACCTTAAAAA---------CAAT-TTA--------CAGGCATTGGCTCTAT--G-TGC---AAATTTGTGTAA-------TTCTTATGTGCT-GTTTAAA--G------------------GG-CAG-----------CT-AA-AAAG---CTTAAATCTGAATGTTAATGT--------AACTA-TGACT-C---AT---------TTCGTCAC------ATTGCAGCCAAGGAATTCTCGAAAGCCATTGACATGTATTCCAAAGCCATAGAACTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..TTGCCGCGGCCGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1713.003000000000000000000000000000000000000000000000000000000000000003
..........................ATAAAGGAAATGATTTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000011000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TGAAAGACACTAAGAAATTGT............................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000001000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................TTTAAA--G------------------GG-CAG-----------CT-AA-AAAG---...............................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................AAA--G------------------GG-CAG-----------CT-AA-AAAG---CTTA...........................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AAAAA---------CAAT-TTA--------CAGGCATTG..........................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................AGGCATTGGCTCTAT--G-TG.............................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTCGAAAGCCATTGACAT......................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TCTTATGTGCT-GTTTAAA--G------------------GG-..........................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................AAATTGTATGC---AA--CTCA----------AGAG...............................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------AACTA-TGACT-C---AT---------TTCGTCA................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
............CGAGCAGTACAAAAATAAAGGAAATGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GAGCGTCCCG--TGTTGTCT-GT-A.........................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTTTGCCGCGGCTGAGCAGTACAAAAATAAGGGAAATGAATTGCTCAAAAGTAAGTTGT----------CATTT-----GTAAA-ATTGAAATTGAAACAAACTACAATTAGACAGT--------------------------------------TTT---------GATAATGACTGG---CAT-----------------GAAAG-CACATGCAATCTAAAAAGCAGTTGTATGC---AC--CCAC----------AGCGCGTCCCG--TGTTGCTAGTACGTTTTT---TTCTCGACCTAACCTTAAAAA---------CAAT-TGA--------CTAGCAGTGGCGCTAT--G-TGAATATAATTT-------TTAC-------------A-GTAGCT-TTTGAAATTAAAATCTGCATATT-TTAATTGAAACAT-ATAGTTAATG---TCAAATATGTAATCGTAAT---------------------CA---AT---------TCTGTCAT------TTCGCAGCTAAGGAATTCTCGAAAGCCATTGACATGTATTCCAAAGCCATAGAACTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................AATAAGGGAAATGAATTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCATTGACATGTATTC................1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTCGAAAGCCATTGACATGTA...................2411.001100000
droGri2
TTTTGCCGCTGCTGAGCAGTGCAAAAATAAGGGAAATGATTTGCTCAAAAGTAAGTTGT----------CATTC-----ATCAC-TTACACAA-TTCACTAGATA----------------------------------------------------T---------------TCTCTGTAGTCT-----------------GCAAATCACGCGAAACTCAATGAGAAGCTATGCG------------CAACAGACCCACAGCGTCCCG--TGC---TT-GA--AG-TT---ACTTCGACCTAACCTTAAAA----------CAAATTGA--------CTGGCATTGGCGCTATGTG-AGA---TAATTTGTGAAA-------TTC--------TGTGGGCC---TGCAATCATA--CTGAATATTATCGACTAAAATACAACAATTATTGATATGCAACAAATAAC--------------------A-TGCCACA---AT---------TAAACCGT------TTCACAGCCAAGGAATTTTCGAAAGCCATTGACATGTATTCCAAAGCCATCGAACTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................AATAAGGGAAATGATTTGCTCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110

Generated: 05/17/2015 at 10:20 PM