ID:

dan_384

 Coordinate:

scaffold_12911:276794-276944 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.5 -2.2 -1.9 -1.8

Flybase annnotation

exon [dana_GLEANR_7688:1]; CDS [Dana\GF23105-cds]; intron [Dana\GF23105-in]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_6657:7250-7267 -
  2. scaffold_9467:1703-1720 +
  3. scaffold_12613:156285-156302 -
  4. scaffold_12613:314160-314177 -
  5. dan_384  scaffold_12911:276875-276892 -
  6. scaffold_13111:456465-456482 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGAGCGTTCTCTGACAGGTCGGAGCACGATGCTTTCGGGTGCGGGAGAGGTTCGAGAGAAAAAATTATTATAATAAATATAGATTTTAAAAAAGTGGGGAAAAAACAAAAAAAAAGGGGGGGAAAATGATAGGAAAAATCAAATTACATAAAAAAACGAAAAAATAAACAAAACAAAAAATTATACATAAAAATAAGGAATGGAAAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCGGAAGTTGATATA
**************************************************.(((................................................................................................................................................)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V055
head
 V105
male body
.GCAGCGCGCTCTGACAGGTCGG.................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0
...................................................................................................GAAAAAACAAAGAAAAAGGG.................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
.......................................................................................TAAAAAAGGAGGGAACAAACAAAAAA.......................................................................................................................................... 26 3 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................................................................AACAAGAAAGGAAAGCTAACTTCGGGC.................. 27 0 20 0.50 10 10 0 0 0 0
.......................................................................................................................................................AAAAAACGAAAAAAGAAACAA............................................................................... 21 1 3 0.33 1 1 0 0 0 0
..........................................................................................................................................................................................................................AAGCTAACTTCGGGCGGAGCGGAA......... 24 0 10 0.20 2 1 1 0 0 0
...................................................................................................GAAAAAACAAAAAGAAAGAGGG.................................................................................................................................. 22 2 5 0.20 1 1 0 0 0 0
..............................................................................................................................................................................................................................TAACTTCGGGCGGAGCGGAAGTTG..... 24 0 6 0.17 1 0 1 0 0 0
........................................................................................................................................................AAATACCAAAAAATAAACAAAACAAG......................................................................... 26 3 6 0.17 1 1 0 0 0 0
......................................................................................................AAAACAAAAAAAAAGGGG................................................................................................................................... 18 0 6 0.17 1 1 0 0 0 0
.........................................................................................................................................................................................................TGGAAAACAAGAAAGGAAAGCTAACT........................ 26 0 7 0.14 1 1 0 0 0 0
................................................................................TAGAATGTAAAAAAGTAGGGA...................................................................................................................................................... 21 3 8 0.13 1 0 0 0 1 0
........................................................................................................................................................................................................................GAAAGCTAACTTCGGGCGGAGCGGAAG........ 27 0 8 0.13 1 0 1 0 0 0
........................................................................................................................................................................................................................GAAAGCTAACTTCGGGCGGAGCGGAA......... 26 0 9 0.11 1 0 0 1 0 0
.........................................................................................................................................................................................................TGGAAAACAAGAATGGAAAGC............................. 21 1 9 0.11 1 0 1 0 0 0
...........................................................................................................................................................................................ATTAAAATAAGGAATGGAGA............................................ 20 2 10 0.10 1 0 0 0 0 1
.................................GTTCGGGTGCGGGAAAGCT....................................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0
..........................................................................................................................................................AAACGAAAAAACAAACAAAA............................................................................. 20 1 10 0.10 1 1 0 0 0 0
.........................................................................................................................................................................................ACAAAAAAACAAGGAATGGA.............................................. 20 2 11 0.09 1 0 1 0 0 0
..............................................................................................................................................................GAAAGAATACACAAGACAAAAA....................................................................... 22 3 11 0.09 1 1 0 0 0 0
...........................................................................................................................................................................................................................AGCTAACTTCGGGCGGAGCGG........... 21 0 12 0.08 1 0 1 0 0 0
...............................................................................................................................................................................................AAACAAGGAAAGGAAAACGAGAA..................................... 23 3 12 0.08 1 1 0 0 0 0
...........................................................................................................................................................AACCAAAAAATAAACAAAACAAAACC...................................................................... 26 3 12 0.08 1 1 0 0 0 0
.....................................................................................................AAAAACAAAAGAAAAGGGG................................................................................................................................... 19 1 13 0.08 1 1 0 0 0 0
........................................................................................................................................................................................................ATGGAAAACAGGAAAGGGAA............................... 20 2 14 0.07 1 0 1 0 0 0
................................................................................TAGATTGTAAAGAAGTAGGG....................................................................................................................................................... 20 3 15 0.07 1 0 0 0 1 0
..............................................................................................................................................................GAAAGAATACACCAAACAAAAA....................................................................... 22 3 18 0.06 1 1 0 0 0 0
...................................................................................................GAAAAAACAAACAAAAATGGG................................................................................................................................... 21 2 19 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................ATGGAAAATAAGAAAGGGA................................ 19 2 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................................................GGAAAACAAGAAAGGAGACC............................. 20 2 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................ATGGAAAAAGAGAAAGGAAA............................... 20 2 20 0.05 1 0 0 0 0 1
....................................................................................................AAAAAACAAAAAAAAAGGGC................................................................................................................................... 20 1 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

ACCTCGCAAGAGACTGTCCAGCCTCGTGCTACGAAAGCCCACGCCCTCTCCAAGCTCTCTTTTTTAATAATATTATTTATATCTAAAATTTTTTCACCCCTTTTTTGTTTTTTTTTCCCCCCCTTTTACTATCCTTTTTAGTTTAATGTATTTTTTTGCTTTTTTATTTGTTTTGTTTTTTAATATGTATTTTTATTCCTTACCTTTTGTTCTTTCCTTTCGATTGAAGCCCGCCTCGCCTTCAACTATAT
**************************************************.(((................................................................................................................................................)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 M044
female body
...............................................................................................................................ACCATCCATTTTAGTTTAA......................................................................................................... 19 2 4 0.25 1 1 0 0
........................................................................................................................................................................................................TACCTTTTGTTCTTTCCTTTCGATTGA........................ 27 0 6 0.17 1 0 0 1
.................................................................................................................................................................................................................................GAAGCCCGCCTCGCCTTCAACTAT.. 24 0 6 0.17 1 1 0 0
.......................................................................................................................................................................................................CTACCTTTTGTTCTTTCCTTTCGATGG......................... 27 2 7 0.14 1 1 0 0
...............................................................................................................................................................................................................TGTTCTTTCCTTTCGATTGAAGC..................... 23 0 20 0.10 2 0 2 0
................................................................................................................TTCTCCCCCCCTTTGACAAT....................................................................................................................... 20 3 18 0.06 1 0 1 0
..........................................................................................................................................................................................................CCTTTTGTTCTTTCCTTTCGATTG......................... 24 0 20 0.05 1 1 0 0
...........................................................................................................................................................................................................CTTTTGTTCTTTCCTTTCGATTGAAGCC.................... 28 0 20 0.05 1 1 0 0
...........................................................................................................................................................................................................CTTTTGTTCTTTCCTTTCGATTGAAGC..................... 27 0 20 0.05 1 1 0 0
.........................................CTCCCTCTTCACGCTCTCTT.............................................................................................................................................................................................. 20 3 20 0.05 1 1 0 0
...........................................................................................................................................................................................................CTTTTGTTCTTTCCTTTCGATTGAAG...................... 26 0 20 0.05 1 1 0 0
.........................................................................................................................................CTAGTTTAATGTATTTGTT............................................................................................... 19 2 20 0.05 1 0 1 0
..........................................................................................................................................................................................................CCTTTTGGTCTTTCCTTTCGATTG......................... 24 1 20 0.05 1 1 0 0
......................................................................................................................................................TTTTTTGGCTTTTTTATTT.................................................................................. 19 1 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12911:276744-276994 - dan_384 TGGAGCGTTCTCTGACAGGTCGGAGCACGATGCTTTCGGGTGCG-GGAGAGGTTCGAGAGAAAAAATTAT----TATAATAAAT-ATA------------GATTTTAAAAAAGTGGGGAAAA----------------------------------AACAAAAAAAAAGGGGG---------------------------------------------------GG-----------------------------AAA-----A--------------------------TGAT-AGG--------A--------AAA------------------------------------------AT----------CAAATTACATAAA---------------------AAAACGAAAAAATAAACAAAACAAAAAATTATACATAAAA--------------------------------------------------------------------ATAAGGAATGGAAAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCGGAAGTTGATATA
droBip1 scf7180000394221:28451-28694 + TGGTGCATCTTGGTACAGGTTGGAGCCACGTGCTTCCGGGTGCGAGGAGGCGGTAGAGG----------------------------------------------------AGTA----------------------------------------------------AGGGTG---------------------------------------------------GTGAGGAGAAGTTGAATGAGAAAAAAATGGAAAG-----TTAAAAAAAAAAAACAAAAAACAAAAAAAATAAAAATAA-----------------------------------------AATA------AA-----AT---------AAAA---------------TAAAATAAAATAATAAAAAAA-------AGA------------------------------------------AAATATATTGGATT---------------------------TAA----------------AAAAAACAAGAAAGGAAAGCTAACTTCGGGCTGAGCCGAAGTTTATATA
droKik1 scf7180000301622:6079-6238 + GAGAGTACA-------------------------------------------------------AAATAT--------AA---------TATAATATAAATATAATATACTATAAATATATA----------------------------------AATAAATAAAAACGCAT---------------------------GCAAAATAATTAAAG-------------------------------------------------------------------------------------------T--------ATA------------------------------------------AT----------AAAAATATATAAC---------------------TATATAAATAAATAAATAAATAAACAAAATATAAAAAATA--------------------------------------------------------------------AAAACGCATGCA---------------------------------------AAATTAG
droFic1 scf7180000454121:5253-5409 - AAATATAAA----------------------------------------------------------------ATAA-TA------AAGATTAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----GTGATATAAAAATGTAAAAAAAATAAATAGT-TAG--------A--------AATGT-TAAAAATAAAAAATAAGTT---------------------AAAAAAAAAAA----------AAAAAAATTATATAAATAAAGTCAAAAAT--------------------------------GTGAAAACGT------------------------------------------------------------------------TCGGCAAAAAAT---------------------------TAGAAAGG
droEle1 scf7180000491163:5660-5811 + AAAATG----------------------------------------------------------------TTATAATTCAAG----------------------------------------------------------------------------------------CAAGAGAAAAAACCCGGAAAAAAT------AAGAAAGAACCAAACTGAACCAAAAA-----------------------------AAA-----A--------------------------TAAC-TGA--------A---------------------------------------------TAA-----AT---------AAAA---------------TAAAATAAAAAGGTGAAACAA-------TAA------------------------------------------AAATGCAACGGGAA----GA--------------------------AA------------A-CATGTAAAAAA---------------------------ATGTAGAAT
droRho1 scf7180000765982:91165-91360 + CGGGAG----------------------------------------------------------------TAATTCCAAAAA-ATTAAGATTATAA-------TT------A--------------------------------------------------------------------------------T-TAATGT----------------------------------------------------------AAAAA---------------------------TAGTCTTGTCATTATTA---------------------AAAATACAAATTATA-----TACAAATA----TT----------CAGATTACTTAAA---------------------AAACTATCATAT-TGAGAATACGACATTTTTTCCTCATC--------------------------------------------------------------------AATTAAAT--AAAAAACAAGAAAGGAAAGCTTACTTCGGGGGGAGCCGAAGTTCAAATA
droBia1 scf7180000302078:20645-20812 - CGGGGCACG----------------------------------------------------------------CTTT-AG-------AGTTCGGCGGCGGAGAAAAAAAATCCAAAAATGTCTCAAAAAAAATAAAAAAAATATAAAAAAACAAAGAGAGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------GAGAGAAAGGGAGAGAAAGAGAGAGAGA------------------------------------------------------------------------------------------------------------------------------------------------GAAAAAGAGAGAGAAAGAAGAGTGAGAAAAGAGAGAGAGA-------------AG--------------------------AAAAAAA
droTak1 scf7180000414471:11241-11382 + ACTATAA----------------------------------------------------------------AAAAT--AA---------AAT-----------------------------------AAAAATAAATAAAATAAAATAAAATAAAATGACAAT-----------------------------------------------------------------------------------------------------------------------------------------GTGATCGTGAGTGAATATATCCAACTATAAAAAATAAACT------------------------------------------------------------------------------------------------------------------------------------------------AAAAATAAATAAAATAAAATTAAATAAAATATTAAACAAGTG---------------------------------------AAAAAAA
droEug1 scf7180000409035:8921-9081 - AAAATA----------------------------------------------------------------TAAAATATAAAA-T------ATAAAA-TATAAAAT------A--------------------------------------------------------------------------------T-AAAATA----------------------------------------------------------TAAAA---------------------------TATAAAATATAA---------------------AATATAAAATATAAAATAAAAATA-----AAAATAAAAA---------ATAA---------------TAAATAAATAAAATAAAAAAT------------------------AAA---------------------------------------------------AAATAAAAAATAAAAAAT----------------AAAAAATAAAAAATAA--------------------------AAAATAA
dm3 chr3L:23371480-23371636 + TATAAAA----------------------------------------------------------------AAAACA-TTAA-------TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------AAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------ATGAGTTAAGAAA----------------------------------------------------------TACAAAAA---------------------GAAATACAAAAAAAAACTATAAAAAAAATAATATAAAAAA--------------------------------------------------ATACAGATTAT----------------AAGAAATAAGAAATA---------------------------AGAAATA
droSim2 node_42816:700-810 + AAATAA----------------------------------------------------------------TAAAAATACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGATAAAG-------------------------------------------AAA------------------------------------------AA----------CAAAAGTCTAAAG---------------------AAAATGTAAAAA-TGAAAACCAAACCAAATGTAACAAAT--------------------------------------------------------------------ACTGAAATAAGTA---------------------------------------ACGAAAA
droSec2 scaffold_46:189252-189435 - GGTTTGAAA--------------------------------------------------GAAAAAGTAGA----CACGTTAAAA-ATC------------AAAATTAAAGCATTA----ATA----------------------------------CCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------------AAGAAGAGAAA----------AAAGAGGATTGGTGAATGGAAATATGGACGCTAAAGA-------------------------------CGCCCAACATATAAATGATAAGTTTAACGTTGTTAAGGAAAACGAAAATCAAATGACACAAAAAATTATTC----------------AA--------------------------CAAAATA
droYak3 v2_chrUn_3524:7174-7287 + AAATGTAAA----------------------------------------------------------------TCAA-AA-------AAGTCGAAAAT-------------A--------------------------------------------------------------------------------A-TAAGGC----------------------------------------------------------AGAAAA--------------------------AGGT-TCG--------A--------AAA-------------ATCTAAACTATA-----AACAAAAA----AA----------AAAAAAACCAAAA-----------------------------------------ACGAATTATTGTAA-------------------------------------------------------------------------------TCAAACA---------------------------------------TAAACAA
dp5 Unknown_group_391:5746-5887 - TTAGCA----------------------------------------------------------------CAAGAA------AT-ACT------------CATTATGAAAAGATGAGGAAAA----------------------------------TAAATA------------------------------------------------------------------------------------------------TGAGAA--------------------------AGGT-GAG--------A--------TTA-------------AT-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCGATGACTTTAA----GTCGAAACTAATAATGATCAAGTAGCACAAACAATTACGC----------------AG--------------------------ATCAATA
droWil2 scf2_1100000004968:793419-793579 - AAAAAA----------------------------------------------------------------CAATTCTAAGTA---------AAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------GAA-----TTGAAATAAAAAAACAAAAAACACAAAAAGTCTAAACATTGTAGTGAACAA-----------------------ATTA---TCACTACAAAA-----AT---------AAAG---------------GAAACTAACAGTGCCCAAAAC-------------------------------------------------TTAAAAAACAATTCTAA----GT--------------------------AA------------A-ATAGAATTGAA---------------------------ATAAAAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TGGAGCGTTCTCTGACAGGTCGGAGCACGATGCTTTCGGGTGCG-GGAGAGGTTCGAGAGAAAAAATTAT----TATAATAAAT-ATA------------GATTTTAAAAAAGTGGGGAAAA----------------------------------AACAAAAAAAAAGGGGG---------------------------------------------------GG-----------------------------AAA-----A--------------------------TGAT-AGG--------A--------AAA------------------------------------------AT----------CAAATTACATAAA---------------------AAAACGAAAAAATAAACAAAACAAAAAATTATACATAAAA--------------------------------------------------------------------ATAAGGAATGGAAAACAAGAAAGGAAAGCTAACTTCGGGCGGAGCGGAAGTTGATATASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGAAAGGAAAGCTAACTTCGGGC..................27200.50100100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTAACTTCGGGCGGAGCGGAA.........24100.202110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTCGGGCGGAGCGGAAGTTG.....2460.171100000
........................................................................................................................AA----------------------------------AACAAAAAAAAAGGGG................................................................................................................................................................................................................................................................................................................................................................................................................1860.171010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAACAAGAAAGGAAAGCTAACT........................2670.141010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTAACTTCGGGCGGAGCGGAAG........2780.131100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTAACTTCGGGCGGAGCGGAA.........2690.111001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAACTTCGGGCGGAGCGG...........21120.081100000
......................................................................................................................AAAA----------------------------------AACAAAAAAAAAGGGC................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
droBip1
TGGTGCATCTTGGTACAGGTTGGAGCCACGTGCTTCCGGGTGCGAGGAGGCGGTAGAGG----------------------------------------------------AGTA----------------------------------------------------AGGGTG---------------------------------------------------GTGAGGAGAAGTTGAATGAGAAAAAAATGGAAAG-----TTAAAAAAAAAAAACAAAAAACAAAAAAAATAAAAATAA-----------------------------------------AATA------AA-----AT---------AAAA---------------TAAAATAAAATAATAAAAAAA-------AGA------------------------------------------AAATATATTGGATT---------------------------TAA----------------AAAAAACAAGAAAGGAAAGCTAACTTCGGGCTGAGCCGAAGTTTATATASizeHit CountTotal NormTotal
No Reads
droKik1
GAGAGTACA-------------------------------------------------------AAATAT--------AA---------TATAATATAAATATAATATACTATAAATATATA----------------------------------AATAAATAAAAACGCAT---------------------------GCAAAATAATTAAAG-------------------------------------------------------------------------------------------T--------ATA------------------------------------------AT----------AAAAATATATAAC---------------------TATATAAATAAATAAATAAATAAACAAAATATAAAAAATA--------------------------------------------------------------------AAAACGCATGCA---------------------------------------AAATTAGSizeHit CountTotal NormTotal
No Reads
droFic1
AAATATAAA----------------------------------------------------------------ATAA-TA------AAGATTAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-----GTGATATAAAAATGTAAAAAAAATAAATAGT-TAG--------A--------AATGT-TAAAAATAAAAAATAAGTT---------------------AAAAAAAAAAA----------AAAAAAATTATATAAATAAAGTCAAAAAT--------------------------------GTGAAAACGT------------------------------------------------------------------------TCGGCAAAAAAT---------------------------TAGAAAGGSizeHit CountTotal NormTotal
No Reads
droEle1
AAAATG----------------------------------------------------------------TTATAATTCAAG----------------------------------------------------------------------------------------CAAGAGAAAAAACCCGGAAAAAAT------AAGAAAGAACCAAACTGAACCAAAAA-----------------------------AAA-----A--------------------------TAAC-TGA--------A---------------------------------------------TAA-----AT---------AAAA---------------TAAAATAAAAAGGTGAAACAA-------TAA------------------------------------------AAATGCAACGGGAA----GA--------------------------AA------------A-CATGTAAAAAA---------------------------ATGTAGAATSizeHit CountTotal NormTotal
No Reads
droRho1
CGGGAG----------------------------------------------------------------TAATTCCAAAAA-ATTAAGATTATAA-------TT------A--------------------------------------------------------------------------------T-TAATGT----------------------------------------------------------AAAAA---------------------------TAGTCTTGTCATTATTA---------------------AAAATACAAATTATA-----TACAAATA----TT----------CAGATTACTTAAA---------------------AAACTATCATAT-TGAGAATACGACATTTTTTCCTCATC--------------------------------------------------------------------AATTAAAT--AAAAAACAAGAAAGGAAAGCTTACTTCGGGGGGAGCCGAAGTTCAAATASizeHit CountTotal NormTotal
No Reads
droBia1
CGGGGCACG----------------------------------------------------------------CTTT-AG-------AGTTCGGCGGCGGAGAAAAAAAATCCAAAAATGTCTCAAAAAAAATAAAAAAAATATAAAAAAACAAAGAGAGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------GAGAGAAAGGGAGAGAAAGAGAGAGAGA------------------------------------------------------------------------------------------------------------------------------------------------GAAAAAGAGAGAGAAAGAAGAGTGAGAAAAGAGAGAGAGA-------------AG--------------------------AAAAAAASizeHit CountTotal NormTotal
No Reads
droTak1
ACTATAA----------------------------------------------------------------AAAAT--AA---------AAT-----------------------------------AAAAATAAATAAAATAAAATAAAATAAAATGACAAT-----------------------------------------------------------------------------------------------------------------------------------------GTGATCGTGAGTGAATATATCCAACTATAAAAAATAAACT------------------------------------------------------------------------------------------------------------------------------------------------AAAAATAAATAAAATAAAATTAAATAAAATATTAAACAAGTG---------------------------------------AAAAAAASizeHit CountTotal NormTotal
No Reads
droEug1
AAAATA----------------------------------------------------------------TAAAATATAAAA-T------ATAAAA-TATAAAAT------A--------------------------------------------------------------------------------T-AAAATA----------------------------------------------------------TAAAA---------------------------TATAAAATATAA---------------------AATATAAAATATAAAATAAAAATA-----AAAATAAAAA---------ATAA---------------TAAATAAATAAAATAAAAAAT------------------------AAA---------------------------------------------------AAATAAAAAATAAAAAAT----------------AAAAAATAAAAAATAA--------------------------AAAATAASizeHit CountTotal NormTotal
No Reads
dm3
TATAAAA----------------------------------------------------------------AAAACA-TTAA-------TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------AAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------ATGAGTTAAGAAA----------------------------------------------------------TACAAAAA---------------------GAAATACAAAAAAAAACTATAAAAAAAATAATATAAAAAA--------------------------------------------------ATACAGATTAT----------------AAGAAATAAGAAATA---------------------------AGAAATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
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.....................................................................................................................AAAAA----------------------------------AAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................16200.1020000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----------------AAGAAATAAGAAATA---------------------------AGA....21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TAAGAAA----------------------------------------------------------TACAAAAA---------------------GAAATACAAAA...........................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TTAA-------TAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................31200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AA-------TAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................31200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AA-------TAAAAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAATAAGAAATA---------------------------AGAAAT.21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.............................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................30200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................AAAAAAAAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AAAAAA----------------------------------AAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------A.........................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000
........................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------------------------------ATGAGTTAAGAAA----------------------------------------------------------TACAAAAA---------------------......................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AA----------------------------------AAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------ATGAGT....................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAT----------------AAGAAATAAGAAATA---------------------------AG.....21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TTAA-------TAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................AAAAAAAAAA----------------------------------AAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------AT........................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................AAAAAAAAAAAAAAAAA----------------------------------AAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................A-------TAAAAAAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................AAAAAAAAAAAAAAAAA----------------------------------AAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATTAT----------------AAGAAATAAGAAA....................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA--------------------------------------------------ATACAGATTAT----------------AAGA.............................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GTTAAGAAA----------------------------------------------------------TACAAAAA---------------------GAA...................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
..........................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................30200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................AAAAAAAAAAA----------------------------------AAAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AAAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TAAAAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................A-------TAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ATGAGTTAAGAAA----------------------------------------------------------TACAAAAA---------------------......................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.................................................................................A-------TAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.1020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AAGAAA----------------------------------------------------------TACAAAAA---------------------GAAATACA..............................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAAAA--------------------------------------------------ATACAGATTAT----------------AAG..............................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAATAATATAAAAAA--------------------------------------------------ATACAGA.....................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAA--------------------------------------------------ATACAGATTAT----------------AAGAAATA.........................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA--------------------------------------------------ATACAGATTAT----------------AAGA.............................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................AA-------TAAAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAAAAAAAACTATAAAAAA............................................................................................................................................24130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................A----------------------------------AAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------ATGAGT....................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................AAAAAAAAAA----------------------------------AAAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AAAAA----------------------------------AAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------A.........................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACTATAAAAAAAATAATATA...................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAATAA----------------------------------------------------------------TAAAAATACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGATAAAG-------------------------------------------AAA------------------------------------------AA----------CAAAAGTCTAAAG---------------------AAAATGTAAAAA-TGAAAACCAAACCAAATGTAACAAAT--------------------------------------------------------------------ACTGAAATAAGTA---------------------------------------ACGAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................TAAAAATACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGA.................................................................................................................................................................................................................................................................................................................24210.0020000000712100000000
...TAA----------------------------------------------------------------TAAAAATACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGA.................................................................................................................................................................................................................................................................................................................2729.5019000000612010000000
........................................................................................................................................................................................................................................................................TGATAAAG-------------------------------------------AAA------------------------------------------AA----------CAAAAGTCTAAAG---------------------A.....................................................................................................................................................................2713.00300000011100000000
............................................................................TACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGATAAAG-------------------------------------------A................................................................................................................................................................................................................................................................2421.00200000001010000000
............................................................................TACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGA.................................................................................................................................................................................................................................................................................................................1821.00200000002000000000
............................................................................TACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGATAAAG-------------------------------------------AAA------------------------------------------....................................................................................................................................................................................................................2621.00200000000020000000
...TAA----------------------------------------------------------------TAAAAATACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----A....................................................................................................................................................................................................................................................................................................................2431.00300000000210000000
...........................................................................ATACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGATAAAG-------------------------------------------AAA------------------------------------------....................................................................................................................................................................................................................2720.50100000001000000000
............................................................................TACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGATAAAG-------------------------------------------AAA------------------------------------------AA----------........................................................................................................................................................................................................2820.50100000001000000000
..........................................................................................................................................................................TAA---------------------------------------------------GA-----------------------------AAA-----ATGATAAAG-------------------------------------------AAA------------------------------------------AA----------CAAAAGTC................................................................................................................................................................................................3020.50100000010000000000
..........................................................................AATACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGATAAAG-------------------------------------------A................................................................................................................................................................................................................................................................2620.50100000001000000000
....AA----------------------------------------------------------------TAAAAATACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGA.................................................................................................................................................................................................................................................................................................................2620.50100000001000000000
............................................................................TACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGATAAAG-------------------------------------------AA...............................................................................................................................................................................................................................................................2520.50100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGTAACAAAT--------------------------------------------------------------------ACTGAAATAAGTA---------------------------------------.......2820.50100000001000000000
.....A----------------------------------------------------------------TAAAAATACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGA.................................................................................................................................................................................................................................................................................................................2520.50100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAACCAAATGTAACAAAT--------------------------------------------------------------------ACTGA......................................................2620.50100000000100000000
............................................................................TACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGATAAAG-------------------------------------------AAA------------------------------------------A...................................................................................................................................................................................................................2720.50100000000010000000
.............................................................................ACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----ATGA.................................................................................................................................................................................................................................................................................................................1720.50100000000001000000
...TAA----------------------------------------------------------------TAAAAATACAGA----------------------------------------------------------------------------------------TAA---------------------------------------------------GA-----------------------------AAA-----.....................................................................................................................................................................................................................................................................................................................2330.33100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAAAT--------------------------------------------------------------------ACTGAAATAAGTA---------------------------------------ACGAAAA3040.25100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAAAT--------------------------------------------------------------------ACTGAAATAAGTA---------------------------------------ACGA...2740.25100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAAAT--------------------------------------------------------------------ACTGAAATAAGTA---------------------------------------ACGAA..2840.25100000001000000000
droSec2
GGTTTGAAA--------------------------------------------------GAAAAAGTAGA----CACGTTAAAA-ATC------------AAAATTAAAGCATTA----ATA----------------------------------CCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------------AAGAAGAGAAA----------AAAGAGGATTGGTGAATGGAAATATGGACGCTAAAGA-------------------------------CGCCCAACATATAAATGATAAGTTTAACGTTGTTAAGGAAAACGAAAATCAAATGACACAAAAAATTATTC----------------AA--------------------------CAAAATASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAATGTAAA----------------------------------------------------------------TCAA-AA-------AAGTCGAAAAT-------------A--------------------------------------------------------------------------------A-TAAGGC----------------------------------------------------------AGAAAA--------------------------AGGT-TCG--------A--------AAA-------------ATCTAAACTATA-----AACAAAAA----AA----------AAAAAAACCAAAA-----------------------------------------ACGAATTATTGTAA-------------------------------------------------------------------------------TCAAACA---------------------------------------TAAACAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
dp5
TTAGCA----------------------------------------------------------------CAAGAA------AT-ACT------------CATTATGAAAAGATGAGGAAAA----------------------------------TAAATA------------------------------------------------------------------------------------------------TGAGAA--------------------------AGGT-GAG--------A--------TTA-------------AT-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCGATGACTTTAA----GTCGAAACTAATAATGATCAAGTAGCACAAACAATTACGC----------------AG--------------------------ATCAATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTAGCACAAACAATTACGC----------------...................................2372.571801800000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTAGCACAAACAATTACGC----------------AG--------------------------.......2562.50150900000600
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAACTAATAATGATCAAGTAGC.................................................................2562.331400000001400
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTAGCACAAACAATTACGC----------------AG--------------------------A......2661.5090700000200
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAATGC-------------------------------------------------TTGAGCGATGACTTTAA----G..........................................................................................2471.43100900100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTAGCACAAACAATTACGC----------------A..................................2471.1480800000000
....................................................................................................................................................................................................................................................................AGAA--------------------------AGGT-GAG--------A--------TTA-------------AT-----------------------------------------------CGA.............................................................................................................................................................................................2021.0020000000020
..................................................................................AT-ACT------------CATTATGAAAAGATGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2380.6350000011210
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAAGTAGCACAAACAATTACGC----------------...................................2670.5740000000400
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGATCAAGTAGCACAAACAAT........................................................2460.5030000000120
................................................................................................................................................................TA------------------------------------------------------------------------------------------------TGAGAA--------------------------AGGT-GAG--------A--------TTA-------------AT-----------------------------------------------CGA.............................................................................................................................................................................................2420.5010000001000
............................................................................................................................................................TAAATA------------------------------------------------------------------------------------------------TGAGAA--------------------------AGGT-GAG--------A--------TTA-------------AT-----------------------------------------------C...............................................................................................................................................................................................2620.5010000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAACTAATAATGATCAAGTAG..................................................................2460.5030000000300
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAACTAATAATGATCAAGTAGCAC...............................................................2760.5030000000300
..................................................................................................................................................................................................................................................................TGAGAA--------------------------AGGT-GAG--------A--------TTA-------------AT-----------------------------------------------CGAGG-------------------A.......................................................................................................................................................................2520.5010100000000
...........................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCGATGACT...................................................................................................2750.4020200000000
...........................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCGA........................................................................................................2260.3320200000000
...........................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCGAT.......................................................................................................2360.3320200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----GTCGAAACTAATAATGATCAAG.....................................................................2560.3320000000200
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGCACAAACAATTACGC----------------AG--------------------------A......2560.3320200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTAGCACAAACAATTACGC----------------AG--------------------------ATC....2830.3310100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GC-------------------------------------------------TTGAGCGATGACTTTAA----GTCGA......................................................................................2470.2920200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----GTCGAAACTAATAATGA..........................................................................2070.2920200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTAGCACAAACAATTACGC----------------...................................2270.2920200000000
....................................................................................................CATTATGAAAAGATGAGGAAAA----------------------------------TAAA............................................................................................................................................................................................................................................................................................................................................................................................................................2680.2520100001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAATGC-------------------------------------------------TTGAGCGATGACTTTAG----...........................................................................................2380.2520000200000
...........................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCGATGACTT..................................................................................................2840.2510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAACTAATAATGATCAAGTAGCAC...............................................................2850.2010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAATGATCAAGTAGCACAAACAAT........................................................2760.1710100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----GTCGAAACTAATAATGATCAAGTAA..................................................................2860.1710100000000
............................................................................................................................................................................................................................................................................................................................TA-------------AT-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCGA........................................................................................................2460.1710100000000
...........................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCG.........................................................................................................2160.1710100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCACAAACAATTACGC----------------AG--------------------------AT.....2460.1710100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGTAGCACAAACAATTACGC----------------AG--------------------------.......2760.1710100000000
...........................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCGATG......................................................................................................2460.1710100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAACTAATAATGATCAAGTAGCA................................................................2660.1710000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTAGCACAAACAATTACGC----------------AG--------------------------AA.....2760.1710100000000
.................................................................................................................TGAGGAAAA----------------------------------TAAATA------------------------------------------------------------------------------------------------TGAGAA--------------------------AGGT-GA...................................................................................................................................................................................................................................................................................2760.1710000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTAGCACAAACAATTA......................................................2070.1410000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTAGCACAAACAATTACG....................................................2270.1410100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----GTCGAAACTAATAATGATCA.......................................................................2370.1410100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTAGCACAAACAATTACGC----------------AT--------------------------.......2570.1410100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GC-------------------------------------------------TTGAGCGATGACTTTAA----GTCG.......................................................................................2370.1410100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGATGACTTTAA----GTCGAAACT..................................................................................2570.1410100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAACTAATAATGA..........................................................................1780.1310000000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAATGC-------------------------------------------------TTGAGCGATGACTTTA................................................................................................2280.1310100000000
....................................................................................................CATTATGAAAAGATGAGGAAAA----------------------------------TAA.............................................................................................................................................................................................................................................................................................................................................................................................................................2580.1310100000000
....................................................................................................CATTATGAAAAGATGAGGAAAA----------------------------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................2380.1310100000000
...................................................................................T-ACT------------CATTATGAAAAGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110100000000
..................................................................................AT-ACT------------CATTATGAAAAGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110100000000
............................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCGATGA.....................................................................................................24100.1010100000000
............................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------CGAGG-------------------AAAATGC-------------------------------------------------TTGAGCGAT.......................................................................................................22120.0810100000000
droWil2
AAAAAA----------------------------------------------------------------CAATTCTAAGTA---------AAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------GAA-----TTGAAATAAAAAAACAAAAAACACAAAAAGTCTAAACATTGTAGTGAACAA-----------------------ATTA---TCACTACAAAA-----AT---------AAAG---------------GAAACTAACAGTGCCCAAAAC-------------------------------------------------TTAAAAAACAATTCTAA----GT--------------------------AA------------A-ATAGAATTGAA---------------------------ATAAAAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................TCACTACAAAA-----AT---------AAAG---------------GAAACTAACAG...........................................................................................................................................................................2811.00101000
.......................................................................................................................................................................................................................................................................................................................CAA-----------------------ATTA---TCACTACAAAA-----AT---------AAAG---------------G.....................................................................................................................................................................................2570.14101000
...............................................................................................................................................................................................................................................................................................AAAAAGTCTAAACATTGTAGT........................................................................................................................................................................................................................................................................21100.10100010
.................................................................................................................................................................................................................................................................................................AAAGTCTAAACATTGTAGT........................................................................................................................................................................................................................................................................19100.10100010
........................................................................................................................................................................................................................................................................................................AAACATTGTAGTGAACAA-----------------------ATTA---TCAC................................................................................................................................................................................................................................26150.07101000

Generated: 05/17/2015 at 10:17 PM