ID:

dan_375

 Coordinate:

scaffold_12903:689083-689233 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dana\GF16007-cds]; exon [dana_GLEANR_17103:2]; intron [Dana\GF16007-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCAATGTCAGCGAACAGCAACAACAACAACAACAACAGCAAATCACACAGGTCAACACTCATTAAAAAAAAAACAAAAATAGAGAAAAAAAAACAATGATTCAAAAGCACTGAGAAAAAAGCTTGCGGGAGGAGTTGTCAAAGTTAGAACATAGTATGCCCAGATTGGAATAGAAGCAAAAATGGTCACACTACCACACCAAATGTAACAAAGTTCTCGAAAAAGATTCAAAAAGTGATGCATTTTTGTTC
**************************************************.......(((.....................)))........(((((..(((..((((............))))....)))..))))).............((((.((.(((..(((.........)))...))).)).))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 V055
head
 M044
female body
 V039
embryo
 V105
male body
..AATGTCAGCGAACAGCAACA..................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................AGGTTTCAAAAAGTGATGCATT....... 22 2 1 1.00 1 1 0 0 0 0 0
...........GAACAGCAACAACAACAAC............................................................................................................................................................................................................................. 19 0 16 0.50 8 0 8 0 0 0 0
..................................................................................................................................GGAGTTGTCAAAGTTAAAC...................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0
...............................................TAGATCCACACTCATTAAAAAAA..................................................................................................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0
.....................................................................AAAACAAAAATACAGAAAAAAAAA.............................................................................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................AAGTTGCGGGAGGAGTTGACAA.............................................................................................................. 22 3 4 0.25 1 0 0 1 0 0 0
..........................................................................AAAAATAGAGAAAAAAAACC............................................................................................................................................................. 20 1 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................AGCGTTCGGGAGGAGTTGTG................................................................................................................ 20 3 5 0.20 1 0 0 1 0 0 0
......................................................................AAACGAAAATAGAGAAAAA.................................................................................................................................................................. 19 1 6 0.17 1 1 0 0 0 0 0
..................................................................................................................AAAAAGGCTGGCGGGAGG....................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0
...........GAACAGCAACAACAACAACAACAAC....................................................................................................................................................................................................................... 25 0 8 0.13 1 0 0 0 1 0 0
.................................................................................................................................................................................AAAAATGGTGGCACCACCACA..................................................... 21 3 8 0.13 1 1 0 0 0 0 0
...........................................................................AAAATAGAGAAAAAAAAGC............................................................................................................................................................. 19 1 8 0.13 1 1 0 0 0 0 0
...........GAACAGCAACAACAACAACAACA......................................................................................................................................................................................................................... 23 0 9 0.11 1 0 1 0 0 0 0
....................................................................................................................AAAAGCTTGGGGGAGGCG..................................................................................................................... 18 2 9 0.11 1 0 1 0 0 0 0
..............................................CGAGATCAACACTCATTAAA......................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0
............AACAGCAACAACAACAACAAC.......................................................................................................................................................................................................................... 21 0 20 0.10 2 0 1 0 1 0 0
................................................................AAAAAAAAACAAAAAGAGAGAA..................................................................................................................................................................... 22 1 11 0.09 1 0 0 0 0 0 1
............................................................................AAATAGAGAAAAAAAAACCAC.......................................................................................................................................................... 21 2 13 0.08 1 1 0 0 0 0 0
..........CGAACAGCAATACCAACCACAA........................................................................................................................................................................................................................... 22 3 14 0.07 1 0 0 0 0 1 0
..........GGAACAGCAACAACAACAACAACA......................................................................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
............AACAGCAACAACAACAACAACA......................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
............AACAGCAACAACAACAACAACAAC....................................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0
.................CAACAACAACAACAACAACA...................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
..................................................................AAAAAAACAAAAAGACAGAAAAAAA................................................................................................................................................................ 25 2 20 0.05 1 1 0 0 0 0 0
....................................................CAACACCCATCATAAAAAAAA.................................................................................................................................................................................. 21 3 20 0.05 1 1 0 0 0 0 0
.................CAACAACAACAACAACAACAGCA................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

CGTTACAGTCGCTTGTCGTTGTTGTTGTTGTTGTTGTCGTTTAGTGTGTCCAGTTGTGAGTAATTTTTTTTTTGTTTTTATCTCTTTTTTTTTGTTACTAAGTTTTCGTGACTCTTTTTTCGAACGCCCTCCTCAACAGTTTCAATCTTGTATCATACGGGTCTAACCTTATCTTCGTTTTTACCAGTGTGATGGTGTGGTTTACATTGTTTCAAGAGCTTTTTCTAAGTTTTTCACTACGTAAAAACAAG
**************************************************.......(((.....................)))........(((((..(((..((((............))))....)))..))))).............((((.((.(((..(((.........)))...))).)).))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V055
head
 V039
embryo
 M044
female body
 M058
embryo
...................................................AGTTGAGAGTAATTTTTT...................................................................................................................................................................................... 18 1 4 0.25 1 1 0 0 0
.....................................................................................................................................................GTACCATCCGGATCTAACC................................................................................... 19 3 4 0.25 1 0 1 0 0
...............................TTTTGTCGTTTAGTGTGACCGG...................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0
..........................................................................................................................AACGCTCTCCTCACCGGTTT............................................................................................................. 20 3 9 0.11 1 0 0 1 0
...................................................................................................................................................TGGTACCATACGGATCTA...................................................................................... 18 3 20 0.05 1 0 0 0 1
...............TCGTTGTTGTTGTTGTTG.......................................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 1 0
.......................GTGGTTGTAGTTGTCGTTTAGT.............................................................................................................................................................................................................. 22 2 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12903:689033-689283 + dan_375 GCAATGTCAGC--GA---ACAGCAACAACAACAACAACA--------------AC---AGCAA---ATCACACAG-GTCAACACTCATTAAAAAAAAAAC---------AA---------------------------------AAATAG-AGAAAA-------AAAAACAATGA-----------------------------------------------------TTCA--------AAA--GCACTGAGAAAAAAG-CTTGCGG--GA----------G--------------------------GAGTTGTC---------------------------------------------------------------------------------------------------------------------------------------------AAAGTTAGAACATAGTATGCC--------------------------------------------------------------------C----------------AG------------------------------------------------------------------------------------------ATTGGAATAGAAGCAAAAA-------------------------------------------------------------------------------------------------TGGTCACACT------------------------------------------------------ACCACACCAAATGTAACAAAGTTCTCGAA------------------------AAAGATTCAAA-------------------------------------AAG-------------------------TGATGCATT----TT--TG-TTC
droBip1 scf7180000395916:20824-21077 - GCAATGTCAGC--GA---ACAACAACA--------------------------AC---AGCAA---ATCACACAG-GTCAACACTCATTAAAAAAAA-GC---------AA---------------------------------CAATAG-AAAAAAAATATATTAAAA----------------------------------------------------TGCAAAACTAA----------A--GCACTGAGAAAAAAG-GTT----------AATAGAAAAAAGTTTCAAAAGTGT-----TTGTTA---------------------------------------------------------------------AAAT---------------AA-------------------------------------------------------------------------GTGTGCC--------------------------------------------------------------------C----------------AA------------------------------------------------------------------------------------------AGTT---------------------------------------------------------------------------------------------GTATGATTTCAGAAAAGTATGGGCACACTAAT-----------------------------------GTATAATTAC-------------------------------ATT------------CAAAATTATTGAAAAATATTT-GA-------------------------------------AAG-------------------------TGATACATT----TT--TG-CAC
droKik1 scf7180000302486:1076208-1076423 + GCAACATCTAC--A----GCAGCAACA--------------------------CA---AGCCA---GACTAACGC-CATA------------------AACGCATGTCAATCAGC--TGACA----------------------TAATAG-AAAAAAGAGTAGGCAAAAAGAAGA-----------------------------------------------------CCAAGAA-----AGAATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTAAAAAAAAGTAGCAACAAGAAGAGGAAAAATATAAATAAAAGAAATACAAGACTTTACCC-------------------------------------------------------AAA--------------------A-----------ATTTCCTAAA------------------------AAAGGTATTAA-------------------------------------AAA-------------------------CAGAACATA----TA--TG-TAC
droFic1 scf7180000454073:2304410-2304663 + CTTACAACAGC--AACAGGCAACAGCAACAGCAACAGCA--------------GC---TACA------------------------------------GCAAC---AGCAGCAGCAACAC--------G------------------------------ACTAACAACAGCAACATATGTGCACAAGAGCAACA----------------------------------TCAA-------------------------CA-------------------------------------------------------------GCTTGAGATGAA-----------------------------------------------------------AGCGGC---------AAGAG------------------------------------------CAGTCC--------------------------AATTTATAAAATCATAA----------------------------------------------------------------AACTATGCCCAACAAGT----------------------------------------------------------------------------GGAAAATAAAGGAAATCCTGCAGTTATAAAGTTTGTG----AAACTATAAAAAAGTAG-------------------------------------------------------------------A---------------------------------------------AACT---------------------------------------------------------AAGTTGA---------------------------------------ATT---------------CAG--------GGGGAAAT----TT--TT-TCC
droEle1 scf7180000490751:624490-624703 - CCT----------------------------------------------------------------------------------CATTAACAAAAA-AA---------AA------AA-----------AA---------CAAAAACAT-CAACAACATGAAACAAAAGCAAAA-----------------------------------------------------TTAAAAAAGCAGAAA--GCACAGAGAAAAAAAACACCCATAAGTT------------------------TAAACCATTTTA---------------------------------------------------------------------AAATAGTGGCATTATCAACAAAAGTC---------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAATCAACCAAAAATAATAGAGC-----------------------------------------------CAA-GCA-----------ACAACACAAA------------------------AAAGGCAATAAAA-AAAACA-TTTAAA---------------------A----------------------------------------AC--CG-ATC
droRho1 scf7180000778091:252307-252543 - GCAGCA-----------------------------------------------GC---AGCAA---ATCACACAG-GTCAACACTCATTATAAAAAA-AC---------AA------------------------------CAACAACAA-TAACAACACGAATCAAAAACAAAA-----------------------------------------------------TTAAAAA-----AGA--GCACAGAGAAAAAAA-CACGCACAATTT------------------------TAAACCATTTAA---------------------------------------------------------------------AAATAGTGGCATTATCAACAGAAGTC---------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATATCACGAAAACAAAATTAAACTAAC-----------------------------------AAA------------------------------------CAGAAAAAAATCAAAAACACAGCCA---------------AAAAAAATCA-TTTAAA---------------------AAA-------------------------C-------------------GAT
droBia1 scf7180000302187:55186-55483 + AAAATATCACT--CA---AAAATAATTACCTCACAAATA---------------------TGT---ATGATACGA-AAAAAACACTATTAAAATGAT-AA----------G------GA----------TGATCGAAATGT---GATTTG-GTTT--------------CCAAAA-----------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACAAACACGAAAAAAAGAAGAAAAGTTGGCTCAAAAATAGTTAAACACAGGTTAAGAGCACTGC--------------------------GATTTTTGGAGAA---------------------------------------------------------------------ATTGTGTTTAA-----------------------------------------------------------------------A-------TAA------------------------------------ATAAAAAAC-------------------------------------------------------------AAATAAAAGT----------------------------------------------------------------------------------------------------AACGATTA---------------AAATGGAT-ATTTTAAA-ATTTG-TTAGTA---GGTAACA-CCTACAAGTCCTGTTCAAGTGCAAGT-CACAACT----TT--TT-TTC
droTak1 scf7180000415281:47138-47406 - GCAATGTCAGC--GA---GCAACAACAACAGC------A--------------AC---AGCAA---ATCACACAG-GTCAAACCTCATTAAAAAGAA-AA---------AA------AA-----------------------------------------CAATCAAAAGTAAAA--------------------------------------------------A--TACA--------AAT--GCACAGAGAAAAAAA-CACGCAAAATATCAATACAAAAAAGTAATCAAAGATTATATATTATTA---------------------------------------------------------------------GAATAATGAAATCCTGAAAATGA--------------------------------------------------------------------------AGTCA----------------------------------------------------------T----------------------------------------------GAATGAC--------------------------------------------------------------------------------------------------------ATACAAAAC-----------------------------------------------------AT-------AAAAACAAT----------------------------------------------------------------------------------------------------AACCGTTG---------------A---------------A-TAAGAAATAATA---GTTAACAACCTACAAGTC---------------CGGACTT------TTCGAG-TTC
droEug1 scf7180000409089:73553-73779 + GCAATGTCAGC--GA---GCAACAACAACAACAACA-----------------AC---AGCAA---AACACACAG-GTCAACACTCATTAAAAAAAAAAT---------TA---------------------------------A--------------AAAATCAAAAGCAAAA-----------------------------------------------------TAAA--------AAT--GCACAGAGAGAAAAT-ATA-----------------------------------------------------------------------------------------------TTACTTACTTACACCACAAACATAAAGGCCTTATCAGCAAAAGCC---------------------------------------------------------------------------TTAAAA------------------------------------------------------ACATGACTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATTAA------------------------------------------------------------------------ATAAATTGCAAAAA------------------------AAAAGTTAAAA-------------------------------------AGA-------------------------AAGAAAACA----AC--TT-TTA
dm3 chrX:19046783-19047110 - GCAATGTCAAT--GA---ACAACAGCAACAACAACAACA--------------GC---AGCCA---ATCACACAG-GTCAACACTCATTAATAAAAA-GC---------AA---------------------------------AAACAA-AAGCCGCATCAATCAAAGGCAAAA-----------------------------------------------------TTAA--------AAT--GCACAGAGAGAAAAA-GTT----------T----------------------------------------GGGCGGT---------------------------------------------------------------------ATCAACGAGCGCCACAAAAAAAAAATATATTATTTAAAAATTC-------------------------------------------------------------------------------------------------------------------------------------------------------AATTGACACGGTTGAA--TTTTACCAAT------------T--TTTTTATTAACTATAAT-TGGT---------------------------------------------------------------------------------------------------------TTGATTTCCGTAAATCAAAGTAATACAAATAGTGCATGTAAATAAATATAAAATTTATAATTCCCAATTGCGATC-------------------------------CGTC------------------------AAA--------------TCA-GTTCAA---------------------C----------------------------------------AT--CA-ATC
droSim2 x:17947994-17948313 - dsi_26591 GCAATGTCAAT--GA---ACAACAGCAACAACAACAACA--------------GC---AGCCA---ATCACACAG-GTCAACACTCATTAATAAAAA-GC---------AA---------------------------------AAACAA-AAGCCGCATCAATCAAAGGCAAAA-----------------------------------------------------TTAA--------AAT--ACACAGAGAGAAAAG-GTT----------G----------------------------------------GGGCGGT---------------------------------------------------------------------A----CGAGCGCCTCTAGAAATAAT--TATTATTGAAAA-----------------------------------------------------------------------------------ATCGATCAATGAAGTGA-------------------------------------------------------AATTGACACAGTTGAA--TTTCAGCAAT------------TTATTTTTATTAACTATAAT-TGGT---------------------------------------------------------------------------------------------------------T-------CGTAAATCAAAGTAATACTAATAGTGCACGTTAAAAAAAATAAAATTTATAATTCCCAAATGCGACC-----------------------------------------------------------------------------------------------------------------------------------------CGTCAAA----TC--AG-TTT
droSec2 scaffold_8:1336200-1336439 - GCAATGTCAAT--GA---ACAACAGCAACAACAACAACA--------------GC---AGCCA---ATCACACAG-GTCAACACTCATTAATAAAAA-GC---------AA---------------------------------AAACAA-AAGCCGCATCAATCAAAGGCAAAA-----------------------------------------------------TTAA--------AAT--ACACAGAGAGAAAAG-GTT----------G----------------------------------------GGGCGGT---------------------------------------------------------------------A----CGAGTGCCTCTAGAAAAAAT--TATTATTGAAAA-----------------------------------------------------------------------------------ATCGATCAATGATGTGA-------------------------------------------------------AATTGACACGGTTGAA--TTTCAGAAAT------------TAATTTTTATTAACTATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--GG-TTC
droYak3 X:17638716-17639004 - GCAATGTCAAT--GA---ACAACAGCAACAACAAGAAGT--------------GC---AGCCA---ATCACACAG-GTCAACACTCATTAATAAGAA-AC---------AA---------------------------------AAACAC-AAGCCGCATTAGTCAAAGGCAAAA-----------------------------------------------------TTAA--------AGT--GCACAGAGAGAAAAA-TTA----------G----------------------------------------A---------------------------------------------------------------------------------------------AA------------------------------------------GAAAAA--------------------------AATTCTTGAAAAAATAATGAACCAAAAATACGATCAATTAAGTGATTAAAATCT----------------------------------------------GATTGACACGGTCGAA--TTTCCGCAAAACGAAATCAAACCAA-TTTTGATA-TCGC-----------------------------------------------------------------------------------------------------------------------------------AGTGATACAAATA---CACGTAAATAAATACAATTTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GA-TTC
droEre2 scaffold_4690:9310994-9311281 - GCAATGCCAAT--GA---ACAACAGCAACAACAACAGCA--------------GC---AGCCA---ATCACACAG-GTCAACACTCATTAATAAGAG-AC---------AA---------------------------------AAGCAAAAAGCTGCATCAATCAAAGGCAAAA-----------------------------------------------------TAAA--------AAT--GCACAGAGAGAAAAA-GTA----------A----------------------------------------AGGTGGT---------------------------------------------------------------------ATTAGTGAGCGCCCCAAAAA------------------------------------------TAATAT--------------------------AACTTCTAAAACCATGACGATTTA-AAATACGATCAATGAAATGATTTAAATCT----------------------------------------------GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCG-TC-------------------------------AATT------------------------AAA--------------TCC-GCTTAAAATTGA-TCAAAATTAATTAAAAT---------------CGG------AC-CATTATT--TCTTC-CT-GTT
dp5 XL_group1e:11155061-11155329 + GCAGTAGCAGC--CATA-GCCATAGCCAT-ATAGCAGCA--------------GC---AGCAC--------T-CG-AGCAGCATTCA----AAAAGA-AC---------AGCAGCGAAAC--------A--------------------------------------GCTCAAAA-----------------------------------------------------CTGA--------AAT--CCAAACTCAGAAACA-G------------------------------------------------CGCCATCGTCGTTCGAGCAGCACGCAGCAGCAAAAAGCAAAAAAATAAATTATAAAATAACTATATAACTATAAAA-----------------C---------------------------------------------------------------------------AAAAAA------------------------------------------------------ACAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAACT-----------------------------------AAACACTATC-------------------------------TAAC------------------------AAAACTGTTGA---------------A-CGCGA-CCAAAG---GCTAAAAA-------------------------C-GTATATAGTTTTT--TG-TGT
droPer2 scaffold_0:600068-600249 - CCAATTGCAGCC-AC---ACGGCAATTGATACAAAGACA-----------------------------------T-GTAAGTATTCCCTAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATCCGTAGAA--------------------------------------------------------------------------------------------------------------------------------ATATTATCCAATATCGACCATACAAAAGATTGTGTCGAGGAAGTGAAAATAAA--GTTTGAACATTTGGTAGAA------------TATTTTTTACTA-TTACAAAAATATACATATATCGGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--AG-GCA
droWil2 scf2_1100000004511:8859969-8860187 + ACAACAACAAC--AATT-ACAACAACAACAACAAAAATT--------------AC---AACA---------------ACA------------------ACAACAACAAAAACAAC--AACAATTACAA-CAACAA---------CAACAA-CAATTACAACAACAACAACAACAA-----------------------------------------------------TTAC--------AA----------------------------CAA------------------------------------C---------------------------------------------------------------------------------AACAAC------------------------------------------------------------------------------------------------------------------------------------------------------A----------------AAAATTACAACAACAACAACAAATTACA--ACAACAACAATTACA---------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAAC----------------------------------------------------------------------------------------------------AACAATTACAACA-AAAATTACAA-------------------------------------CAA-------------------------CAACAACAA----AT--AC-AAC
droVir3 scaffold_13049:136574-136815 + AAACTTACATA--AA---ACAACAACAA-AACAACAACA--------------AC---AACAA---ATAAACCAATAACAACAAACAGAAA------------------AGGAGCAAAAC--------A-----------------AC-----------TTTTTAAAAAACGAAATCTCTCCAAAAAAGAAAAATACAACAAAAAAAAAATGTCAAAAAAAAGCAAAATATA--------CAA--GAACAAAAAAAAAAC-GTA----------A---------------------------------------------------------------------------------------------------------------------ACAAAAAAAACT---------------------------------------------------------------------------GTAAAA------------------------------------------------------AAAAC-------------------------------------------------------------TGGCAA-----------------------------------------------------------------------------AATTTGTT----AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATAAAAA-------------------------------------AAG-------------------------CGAAACAAA----AA--AG-TAC
droMoj3 scaffold_6496:7795509-7795778 + AA--TCACAGCAAAC---GCAGCAACGGCAACAACAACAACCACAAAGTCGCAGTGAAAGTGCTAAATCAACCAC----------------------------------AA------------------CAACAACAACTA---CAACAA-GAGCCCAAAACTTCAAAAG------------------------------------------------------------------------------------------------------G-------CAACAATATCAAATTCGC-----------CAGCCATC---------------------------------------------------------------------------------------------------------------------------------------------AAAATTTGCATGTGCTGCAAA--------------------------------------------------------------------A----------------GG------------------------------------------------------------------------------------------GCTAAAAAAAAAAAAATAT--TGCTA----ACAATT----------------------------------------------------------------------TAAAAAAATATATATAAAATAAA---------------------------------------------AACTAATTAA-ACA-----------ATTGCTTAAA------------------------AAATATTCAAA----------------------------A---AATAAAA---------------------------AAAACATT----TC--TA-TCT
droGri2 scaffold_14830:517273-517492 - GCAAGCCTGGC--TATAAGCAGCAACAACAGCAACGACA--------------GC---AACAA---------CA------------------------GC------AACAACAACAACGA---------CAGCAACAACAA---C-----------------------------------------------------------------------------------------------------AACAACGACAACAA-CACGTGTAAGTG------------------------CAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAAATGTAAACTACATCCGTACGATTGCACAAAAGTATGCTATAAAAAAT-----------------------------------AAG-------CACAAAACAATGCA-----------AGAGCTGCAA------------------------AAGCACTCGGA----------------------------A---AAAAAAGA-------------------------C-GAGAATT----TA--TGTACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GCAATGTCAGC--GA---ACAGCAACAACAACAACAACA--------------AC---AGCAA---ATCACACAG-GTCAACACTCATTAAAAAAAAAAC---------AA---------------------------------AAATAG-AGAAAA-------AAAAACAATGA-----------------------------------------------------TTCA--------AAA--GCACTGAGAAAAAAG-CTTGCGG--GA----------G--------------------------GAGTTGTC---------------------------------------------------------------------------------------------------------------------------------------------AAAGTTAGAACATAGTATGCC--------------------------------------------------------------------C----------------AG------------------------------------------------------------------------------------------ATTGGAATAGAAGCAAAAA-------------------------------------------------------------------------------------------------TGGTCACACT------------------------------------------------------ACCACACCAAATGTAACAAAGTTCTCGAA------------------------AAAGATTCAAA-------------------------------------AAG-------------------------TGATGCATT----TT--TG-TTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..AATGTCAGC--GA---ACAGCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.............GA---ACAGCAACAACAACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.508000008
.............GA---ACAGCAACAACAACAACAACA--------------AC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.131100000
.............GA---ACAGCAACAACAACAACAACA--------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.111000001
..............A---ACAGCAACAACAACAACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102100001
..............A---ACAGCAACAACAACAACAACA--------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
..............A---ACAGCAACAACAACAACAACA--------------AC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
......................CAACAACAACAACAACA--------------AC---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
......................CAACAACAACAACAACA--------------AC---AGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000
droBip1
GCAATGTCAGC--GA---ACAACAACA--------------------------AC---AGCAA---ATCACACAG-GTCAACACTCATTAAAAAAAA-GC---------AA---------------------------------CAATAG-AAAAAAAATATATTAAAA----------------------------------------------------TGCAAAACTAA----------A--GCACTGAGAAAAAAG-GTT----------AATAGAAAAAAGTTTCAAAAGTGT-----TTGTTA---------------------------------------------------------------------AAAT---------------AA-------------------------------------------------------------------------GTGTGCC--------------------------------------------------------------------C----------------AA------------------------------------------------------------------------------------------AGTT---------------------------------------------------------------------------------------------GTATGATTTCAGAAAAGTATGGGCACACTAAT-----------------------------------GTATAATTAC-------------------------------ATT------------CAAAATTATTGAAAAATATTT-GA-------------------------------------AAG-------------------------TGATACATT----TT--TG-CACSizeHit CountTotal NormTotal
No Reads
droKik1
GCAACATCTAC--A----GCAGCAACA--------------------------CA---AGCCA---GACTAACGC-CATA------------------AACGCATGTCAATCAGC--TGACA----------------------TAATAG-AAAAAAGAGTAGGCAAAAAGAAGA-----------------------------------------------------CCAAGAA-----AGAATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTAAAAAAAAGTAGCAACAAGAAGAGGAAAAATATAAATAAAAGAAATACAAGACTTTACCC-------------------------------------------------------AAA--------------------A-----------ATTTCCTAAA------------------------AAAGGTATTAA-------------------------------------AAA-------------------------CAGAACATA----TA--TG-TACSizeHit CountTotal NormTotal
No Reads
droFic1
CTTACAACAGC--AACAGGCAACAGCAACAGCAACAGCA--------------GC---TACA------------------------------------GCAAC---AGCAGCAGCAACAC--------G------------------------------ACTAACAACAGCAACATATGTGCACAAGAGCAACA----------------------------------TCAA-------------------------CA-------------------------------------------------------------GCTTGAGATGAA-----------------------------------------------------------AGCGGC---------AAGAG------------------------------------------CAGTCC--------------------------AATTTATAAAATCATAA----------------------------------------------------------------AACTATGCCCAACAAGT----------------------------------------------------------------------------GGAAAATAAAGGAAATCCTGCAGTTATAAAGTTTGTG----AAACTATAAAAAAGTAG-------------------------------------------------------------------A---------------------------------------------AACT---------------------------------------------------------AAGTTGA---------------------------------------ATT---------------CAG--------GGGGAAAT----TT--TT-TCCSizeHit CountTotal NormTotal
No Reads
droEle1
CCT----------------------------------------------------------------------------------CATTAACAAAAA-AA---------AA------AA-----------AA---------CAAAAACAT-CAACAACATGAAACAAAAGCAAAA-----------------------------------------------------TTAAAAAAGCAGAAA--GCACAGAGAAAAAAAACACCCATAAGTT------------------------TAAACCATTTTA---------------------------------------------------------------------AAATAGTGGCATTATCAACAAAAGTC---------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAATCAACCAAAAATAATAGAGC-----------------------------------------------CAA-GCA-----------ACAACACAAA------------------------AAAGGCAATAAAA-AAAACA-TTTAAA---------------------A----------------------------------------AC--CG-ATCSizeHit CountTotal NormTotal
No Reads
droRho1
GCAGCA-----------------------------------------------GC---AGCAA---ATCACACAG-GTCAACACTCATTATAAAAAA-AC---------AA------------------------------CAACAACAA-TAACAACACGAATCAAAAACAAAA-----------------------------------------------------TTAAAAA-----AGA--GCACAGAGAAAAAAA-CACGCACAATTT------------------------TAAACCATTTAA---------------------------------------------------------------------AAATAGTGGCATTATCAACAGAAGTC---------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATATCACGAAAACAAAATTAAACTAAC-----------------------------------AAA------------------------------------CAGAAAAAAATCAAAAACACAGCCA---------------AAAAAAATCA-TTTAAA---------------------AAA-------------------------C-------------------GATSizeHit CountTotal NormTotal
No Reads
droBia1
AAAATATCACT--CA---AAAATAATTACCTCACAAATA---------------------TGT---ATGATACGA-AAAAAACACTATTAAAATGAT-AA----------G------GA----------TGATCGAAATGT---GATTTG-GTTT--------------CCAAAA-----------------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACAAACACGAAAAAAAGAAGAAAAGTTGGCTCAAAAATAGTTAAACACAGGTTAAGAGCACTGC--------------------------GATTTTTGGAGAA---------------------------------------------------------------------ATTGTGTTTAA-----------------------------------------------------------------------A-------TAA------------------------------------ATAAAAAAC-------------------------------------------------------------AAATAAAAGT----------------------------------------------------------------------------------------------------AACGATTA---------------AAATGGAT-ATTTTAAA-ATTTG-TTAGTA---GGTAACA-CCTACAAGTCCTGTTCAAGTGCAAGT-CACAACT----TT--TT-TTCSizeHit CountTotal NormTotal
No Reads
droTak1
GCAATGTCAGC--GA---GCAACAACAACAGC------A--------------AC---AGCAA---ATCACACAG-GTCAAACCTCATTAAAAAGAA-AA---------AA------AA-----------------------------------------CAATCAAAAGTAAAA--------------------------------------------------A--TACA--------AAT--GCACAGAGAAAAAAA-CACGCAAAATATCAATACAAAAAAGTAATCAAAGATTATATATTATTA---------------------------------------------------------------------GAATAATGAAATCCTGAAAATGA--------------------------------------------------------------------------AGTCA----------------------------------------------------------T----------------------------------------------GAATGAC--------------------------------------------------------------------------------------------------------ATACAAAAC-----------------------------------------------------AT-------AAAAACAAT----------------------------------------------------------------------------------------------------AACCGTTG---------------A---------------A-TAAGAAATAATA---GTTAACAACCTACAAGTC---------------CGGACTT------TTCGAG-TTCSizeHit CountTotal NormTotal
No Reads
droEug1
GCAATGTCAGC--GA---GCAACAACAACAACAACA-----------------AC---AGCAA---AACACACAG-GTCAACACTCATTAAAAAAAAAAT---------TA---------------------------------A--------------AAAATCAAAAGCAAAA-----------------------------------------------------TAAA--------AAT--GCACAGAGAGAAAAT-ATA-----------------------------------------------------------------------------------------------TTACTTACTTACACCACAAACATAAAGGCCTTATCAGCAAAAGCC---------------------------------------------------------------------------TTAAAA------------------------------------------------------ACATGACTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATTAA------------------------------------------------------------------------ATAAATTGCAAAAA------------------------AAAAGTTAAAA-------------------------------------AGA-------------------------AAGAAAACA----AC--TT-TTASizeHit CountTotal NormTotal
No Reads
dm3
GCAATGTCAAT--GA---ACAACAGCAACAACAACAACA--------------GC---AGCCA---ATCACACAG-GTCAACACTCATTAATAAAAA-GC---------AA---------------------------------AAACAA-AAGCCGCATCAATCAAAGGCAAAA-----------------------------------------------------TTAA--------AAT--GCACAGAGAGAAAAA-GTT----------T----------------------------------------GGGCGGT---------------------------------------------------------------------ATCAACGAGCGCCACAAAAAAAAAATATATTATTTAAAAATTC-------------------------------------------------------------------------------------------------------------------------------------------------------AATTGACACGGTTGAA--TTTTACCAAT------------T--TTTTTATTAACTATAAT-TGGT---------------------------------------------------------------------------------------------------------TTGATTTCCGTAAATCAAAGTAATACAAATAGTGCATGTAAATAAATATAAAATTTATAATTCCCAATTGCGATC-------------------------------CGTC------------------------AAA--------------TCA-GTTCAA---------------------C----------------------------------------AT--CA-ATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................ACAACAACAACA--------------GC---AGCCA---ATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000
.............GA---ACAACAGCAACAACAACAACA--------------GC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATC-------------------------------CGTC------------------------AAA--------------TCA-GTTCAA---------------------C----------------------------------------AT--......2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................ACAACAACA--------------GC---AGCCA---ATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...ATGTCAAT--GA---ACAACAGCAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................GCACAGAGAGAAAAA-GT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1721.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................A-AAGCCGCATCAATCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....GTCAAT--GA---ACAACAGCAACAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GA---ACAACAGCAACAACAACAACA--------------GC---AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................A-GTT----------T----------------------------------------GGGCGGT---------------------------------------------------------------------ATCAACGAGCGCCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................AT--GCACAGAGAGAAAAA-G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
......................................................C---AGCCA---ATCACACAG-GTCAACACTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAATGTCAAT--GA---ACAACAGCAACAACAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ACAACAACAACA--------------GC---AGCCA---AT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........AAT--GA---ACAACAGCAACAACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................A--------AAT--GCACAGAGAGAAAAA-GT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTGAA--TTTTACCAAT------------T--T.......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACAGCAACAACAACAACA--------------GC---AGCCA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GCAATGTCAAT--GA---ACAACAGCAACAACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTCCCAATTGCGATC-------------------------------C..............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAAGTAATACAAATAGTGCATGT..................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................ACA--------------GC---AGCCA---ATCACACAG-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ATGTCAAT--GA---ACAACAGCAACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTAACTATAAT-TGGT---------------------------------------------------------------------------------------------------------TTGA.....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TCAACGAGCGCCACAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AAT--GCACAGAGAGAAAAA-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AATGTCAAT--GA---ACAACAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CA--------------GC---AGCCA---ATCACACAG-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGTCAAT--GA---ACAACAGCAACAACAACAACA--------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCAATTGCGATC-------------------------------CGTC------------------------...................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................AACAACAACAACA--------------GC---AGCCA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000100000000000
.........................CAACAACAACAACA--------------GC---AGCCA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCATGTAAATAAATATC.......................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AACAACAACAACA--------------GC---AGCCA---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................AGCAACAACAACAACA--------------GC---AGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................A--------AAT--GCACAGAGAGAAAAA-GG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCATGTAAATAAATC.........................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................CAACAACAACAACA--------------GC---AGCCC---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................CAACAGCAACAACAACAACA--------------GC---AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................CAACAGCAACAACAACAACA--------------GC---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ACAACAACAACA--------------GC---AGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACAGCAACAACAACAACA--------------GC---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................ACAGCAACAACAACAACA--------------GC---AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.0910000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACAGCAACAACAACAACA--------------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................AGCAACAACAACAACA--------------GC---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................CAACAACAACAACA--------------GC---AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGCAACAACAACAACA--------------GC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCAATGTCAAT--GA---ACAACAGCAACAACAACAACA--------------GC---AGCCA---ATCACACAG-GTCAACACTCATTAATAAAAA-GC---------AA---------------------------------AAACAA-AAGCCGCATCAATCAAAGGCAAAA-----------------------------------------------------TTAA--------AAT--ACACAGAGAGAAAAG-GTT----------G----------------------------------------GGGCGGT---------------------------------------------------------------------A----CGAGCGCCTCTAGAAATAAT--TATTATTGAAAA-----------------------------------------------------------------------------------ATCGATCAATGAAGTGA-------------------------------------------------------AATTGACACAGTTGAA--TTTCAGCAAT------------TTATTTTTATTAACTATAAT-TGGT---------------------------------------------------------------------------------------------------------T-------CGTAAATCAAAGTAATACTAATAGTGCACGTTAAAAAAAATAAAATTTATAATTCCCAAATGCGACC-----------------------------------------------------------------------------------------------------------------------------------------CGTCAAA----TC--AG-TTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCAAATGCGACC-----------------------------------------------------------------------------------------------------------------------------------------CGTCAAA----TC--AG-T..2711.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................A----CGAGCGCCTCTAGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.50100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................A----CGAGCGCCTCTAGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.50100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................A----CGAGCGCCTCTAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000000001000000
..................................................................................................................................................................................................................................................T--ACACAGAGAGAAAAG-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16160.06100000000001000000
droSec2
GCAATGTCAAT--GA---ACAACAGCAACAACAACAACA--------------GC---AGCCA---ATCACACAG-GTCAACACTCATTAATAAAAA-GC---------AA---------------------------------AAACAA-AAGCCGCATCAATCAAAGGCAAAA-----------------------------------------------------TTAA--------AAT--ACACAGAGAGAAAAG-GTT----------G----------------------------------------GGGCGGT---------------------------------------------------------------------A----CGAGTGCCTCTAGAAAAAAT--TATTATTGAAAA-----------------------------------------------------------------------------------ATCGATCAATGATGTGA-------------------------------------------------------AATTGACACGGTTGAA--TTTCAGAAAT------------TAATTTTTATTAACTATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--GG-TTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........AT--GA---ACAACAGCAACAACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
droYak3
GCAATGTCAAT--GA---ACAACAGCAACAACAAGAAGT--------------GC---AGCCA---ATCACACAG-GTCAACACTCATTAATAAGAA-AC---------AA---------------------------------AAACAC-AAGCCGCATTAGTCAAAGGCAAAA-----------------------------------------------------TTAA--------AGT--GCACAGAGAGAAAAA-TTA----------G----------------------------------------A---------------------------------------------------------------------------------------------AA------------------------------------------GAAAAA--------------------------AATTCTTGAAAAAATAATGAACCAAAAATACGATCAATTAAGTGATTAAAATCT----------------------------------------------GATTGACACGGTCGAA--TTTCCGCAAAACGAAATCAAACCAA-TTTTGATA-TCGC-----------------------------------------------------------------------------------------------------------------------------------AGTGATACAAATA---CACGTAAATAAATACAATTTTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GA-TTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-TCGC-----------------------------------------------------------------------------------------------------------------------------------AGTGATACAAATA---CAC....................................................................................................................................................................................................2311.00101000000000
...................CAACAGCAACAACAAGAAGT--------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
GCAATGTCAAT--GA---ACAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATACGATCAATTAAGTGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.CAATGTCAAT--GA---ACAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.......................AGCAACAACAAGAAGT--------------GC---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
GCAATGCCAAT--GA---ACAACAGCAACAACAACAGCA--------------GC---AGCCA---ATCACACAG-GTCAACACTCATTAATAAGAG-AC---------AA---------------------------------AAGCAAAAAGCTGCATCAATCAAAGGCAAAA-----------------------------------------------------TAAA--------AAT--GCACAGAGAGAAAAA-GTA----------A----------------------------------------AGGTGGT---------------------------------------------------------------------ATTAGTGAGCGCCCCAAAAA------------------------------------------TAATAT--------------------------AACTTCTAAAACCATGACGATTTA-AAATACGATCAATGAAATGATTTAAATCT----------------------------------------------GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCG-TC-------------------------------AATT------------------------AAA--------------TCC-GCTTAAAATTGA-TCAAAATTAATTAAAAT---------------CGG------AC-CATTATT--TCTTC-CT-GTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................AACAGCA--------------GC---AGCCA---ATCACACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
....................................................................CACACAG-GTCAACACTCATTAATAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAATACGATCAATGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..................ACAACAGCAACAACAACAGCA--------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0611000000
........................GCAACAACAACAGCA--------------GC---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
dp5
GCAGTAGCAGC--CATA-GCCATAGCCAT-ATAGCAGCA--------------GC---AGCAC--------T-CG-AGCAGCATTCA----AAAAGA-AC---------AGCAGCGAAAC--------A--------------------------------------GCTCAAAA-----------------------------------------------------CTGA--------AAT--CCAAACTCAGAAACA-G------------------------------------------------CGCCATCGTCGTTCGAGCAGCACGCAGCAGCAAAAAGCAAAAAAATAAATTATAAAATAACTATATAACTATAAAA-----------------C---------------------------------------------------------------------------AAAAAA------------------------------------------------------ACAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAACT-----------------------------------AAACACTATC-------------------------------TAAC------------------------AAAACTGTTGA---------------A-CGCGA-CCAAAG---GCTAAAAA-------------------------C-GTATATAGTTTTT--TG-TGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............ATA-GCCATAGCCAT-ATAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................CA----AAAAGA-AC---------AGCAGCGAAAC--------A--------------------------------------G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................TTCGAGCAGCACGCAGCAGCAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.............................................................................................................................................................................................................................................................................................................................GTCGTTCGAGCAGCACGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------A-CGCGA-CCAAAG---GCTAAAAA-------------------------C-.....................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CCAAAG---GCTAAAAA-------------------------C-GT...................1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAG---GCTAAAAA-------------------------C-GTATATA..............2211.0010100000000
................................................................................................A-AC---------AGCAGCGAAAC--------A--------------------------------------GCTCAAAA-----------------------------------------------------CT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................AT-ATAGCAGCA--------------GC---AGCAC--------T-CG-AGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.....................................................................................................................................................................................................................................................................G------------------------------------------------CGCCATCGTCGTTCGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
CCAATTGCAGCC-AC---ACGGCAATTGATACAAAGACA-----------------------------------T-GTAAGTATTCCCTAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATCCGTAGAA--------------------------------------------------------------------------------------------------------------------------------ATATTATCCAATATCGACCATACAAAAGATTGTGTCGAGGAAGTGAAAATAAA--GTTTGAACATTTGGTAGAA------------TATTTTTTACTA-TTACAAAAATATACATATATCGGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--AG-GCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACATATATCGGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--A.....2111.001010000
droWil2
ACAACAACAAC--AATT-ACAACAACAACAACAAAAATT--------------AC---AACA---------------ACA------------------ACAACAACAAAAACAAC--AACAATTACAA-CAACAA---------CAACAA-CAATTACAACAACAACAACAACAA-----------------------------------------------------TTAC--------AA----------------------------CAA------------------------------------C---------------------------------------------------------------------------------AACAAC------------------------------------------------------------------------------------------------------------------------------------------------------A----------------AAAATTACAACAACAACAACAAATTACA--ACAACAACAATTACA---------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAAC----------------------------------------------------------------------------------------------------AACAATTACAACA-AAAATTACAA-------------------------------------CAA-------------------------CAACAACAA----AT--AC-AACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACA--ACAACAACAATTACA---------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................20160.06101000
..........................................................AACA---------------ACA------------------ACAACAACAAAAACAAC--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.....AACAAC--AATT-ACAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAATTACA---------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACA......................................................................................................................................................................................................................19200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------------------------------------------------------------------------------------------------------------------------------------A----------------AAAATTACAACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
droVir3
AAACTTACATA--AA---ACAACAACAA-AACAACAACA--------------AC---AACAA---ATAAACCAATAACAACAAACAGAAA------------------AGGAGCAAAAC--------A-----------------AC-----------TTTTTAAAAAACGAAATCTCTCCAAAAAAGAAAAATACAACAAAAAAAAAATGTCAAAAAAAAGCAAAATATA--------CAA--GAACAAAAAAAAAAC-GTA----------A---------------------------------------------------------------------------------------------------------------------ACAAAAAAAACT---------------------------------------------------------------------------GTAAAA------------------------------------------------------AAAAC-------------------------------------------------------------TGGCAA-----------------------------------------------------------------------------AATTTGTT----AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATAAAAA-------------------------------------AAG-------------------------CGAAACAAA----AA--AG-TACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................AGAAA------------------AGGAGCAAAAC--------A-----------------AC-----------TT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................ATATA--------CAA--GAACAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
............................................................................AACAACAAACAGAAA------------------AGGAGCAAAAC--------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................CAAAAC--------A-----------------AC-----------TTTTTAAAAAACGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................TTAAAAAACGAAATCTCTCCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ATCTCTCCAAAAAAGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
........................................................................CAATAACAACAAACAGAAA------------------AGGAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000010000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACT---------------------------------------------------------------------------GTAAAA------------------------------------------------------AAAAC-------------------------------------------------------------T..............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................AAAC-GTA----------A---------------------------------------------------------------------------------------------------------------------ACAAAAAAAACT---------------------------------------------------------------------------GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
...............................CAACAACA--------------AC---AACAA---ATAAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.331000000000000001000000000000000000000000000000000000000000000000
................................AACAACA--------------AC---AACAA---ATAAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201001000000000000000000000000000000000000000000000000000000000000
...........................A-AACAACAACA--------------AC---AACAA---ATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.172002000000000000000000000000000000000000000000000000000000000000
.........................CAA-AACAACAACA--------------AC---AACAA---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.081001000000000000000000000000000000000000000000000000000000000000
...........................A-AACAACAACA--------------AC---AACAA---AT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.......................AACAA-AACAACAACA--------------AC---AAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
........................ACAA-AACAACAACA--------------AC---AACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AA--TCACAGCAAAC---GCAGCAACGGCAACAACAACAACCACAAAGTCGCAGTGAAAGTGCTAAATCAACCAC----------------------------------AA------------------CAACAACAACTA---CAACAA-GAGCCCAAAACTTCAAAAG------------------------------------------------------------------------------------------------------G-------CAACAATATCAAATTCGC-----------CAGCCATC---------------------------------------------------------------------------------------------------------------------------------------------AAAATTTGCATGTGCTGCAAA--------------------------------------------------------------------A----------------GG------------------------------------------------------------------------------------------GCTAAAAAAAAAAAAATAT--TGCTA----ACAATT----------------------------------------------------------------------TAAAAAAATATATATAAAATAAA---------------------------------------------AACTAATTAA-ACA-----------ATTGCTTAAA------------------------AAATATTCAAA----------------------------A---AATAAAA---------------------------AAAACATT----TC--TA-TCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................TCAACCAC----------------------------------AA------------------CAACAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091100000
droGri2
GCAAGCCTGGC--TATAAGCAGCAACAACAGCAACGACA--------------GC---AACAA---------CA------------------------GC------AACAACAACAACGA---------CAGCAACAACAA---C-----------------------------------------------------------------------------------------------------AACAACGACAACAA-CACGTGTAAGTG------------------------CAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAAATGTAAACTACATCCGTACGATTGCACAAAAGTATGCTATAAAAAAT-----------------------------------AAG-------CACAAAACAATGCA-----------AGAGCTGCAA------------------------AAGCACTCGGA----------------------------A---AAAAAAGA-------------------------C-GAGAATT----TA--TGTACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:12 PM