ID:

dan_36

 Coordinate:

scaffold_13417:2467469-2467532 -

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.5 -33.9 -33.9

Flybase annnotation

utr5 [utr5_plus_15691]

No Repeatable elements found

Sense Strand Reads

AGTCCTACCCCCACACCAGCGAGGCACACGCGTACCGCCGAGGTTCGGCCTCGATCACGAGAACGTCGCATCTTAGTTACATTTCCATATGATGAGATATTCACGTCGTCGAAACCGTGTCTCGGCTTGGCCACCAATCGCAAGCATACCTAGTACCGGAAGTA

***********************************.(((((((..(((..(((((.(((.(((.(((.((((..................)))).))).))).))).)))))..)))..)))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V105

male body		 M044

female body

 V055

head

 V106

head

 M058

embryo

 V039

embryo
............................................................................................TGAGATATTCACGTCGTCGAA................................................... 21 0 1 226.00 226 173 29 16 8 0 0
..................................................TCGATCACGAGAACGTCGCATCT........................................................................................... 23 0 1 179.00 179 144 15 9 9 2 0
............................................................................................TGAGATATTCACGTCGTCGA.................................................... 20 0 1 136.00 136 91 33 9 3 0 0
............................................................................................TGAGATATTCACGTCGTCGAAA.................................................. 22 0 1 134.00 134 102 27 4 1 0 0
...........................................................................................ATGAGATATTCACGTCGTCGAA................................................... 22 0 1 49.00 49 44 2 3 0 0 0
...........................................................................................ATGAGATATTCACGTCGTCGA.................................................... 21 0 1 33.00 33 29 3 0 1 0 0
............................................................................................TGAGATATTCACGTCGTCGAAT.................................................. 22 1 1 32.00 32 25 3 1 3 0 0
..................................................TCGATCACGAGAACGTCGCAT............................................................................................. 21 0 1 30.00 30 21 3 5 0 1 0
...........................................................................................ATGAGATATTCACGTCGTCGAAA.................................................. 23 0 1 23.00 23 16 3 2 2 0 0
..................................................TCGATCACGAGAACGTCGCATC............................................................................................ 22 0 1 20.00 20 14 5 0 0 1 0
............................................................................................TGAGATATTCACGTCGTCG..................................................... 19 0 1 12.00 12 8 2 2 0 0 0
...........................................................................................ATGAGATATTCACGTCGTCGAAT.................................................. 23 1 1 11.00 11 7 1 2 1 0 0
...........................................................................................ATGAGATATTCACGTCGTCG..................................................... 20 0 1 10.00 10 10 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGAATT................................................. 23 2 1 8.00 8 8 0 0 0 0 0
.............................................................................................GAGATATTCACGTCGTCGAAA.................................................. 21 0 1 6.00 6 0 6 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGAAAT................................................. 23 1 1 5.00 5 4 0 0 1 0 0
..................................................TCGATCACGAGAACGTCGCA.............................................................................................. 20 0 1 5.00 5 5 0 0 0 0 0
..................................................TCGATCACGAGAACGTCTCATCT........................................................................................... 23 1 1 3.00 3 2 0 1 0 0 0
..............................................................................................AGATATTCACGTCGTCGAA................................................... 19 0 1 3.00 3 0 3 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGAT................................................... 21 1 1 3.00 3 2 0 1 0 0 0
..................................................TAGATCACGAGAACGTCGCATCT........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................TCGATCACGAGAACGTCGCATCTTT......................................................................................... 25 1 1 3.00 3 1 0 1 1 0 0
..................................................TCGATCACGAGAACGTCTCAT............................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................GAGATATTCACGTCGTCGAA................................................... 20 0 1 2.00 2 0 2 0 0 0 0
............................................................................................TGAGATATTCACGTCTTCGAAG.................................................. 22 2 1 2.00 2 1 0 1 0 0 0
............................................................................................TGAGATATTCACGTCGTCGACA.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCTAAA.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TCGATCACGAGAACGACGCATCT........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..................................................TCGATCACGAGAACGTCGCAACT........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................ATGAGATATTCACGTCGTCGAATT................................................. 24 2 1 2.00 2 2 0 0 0 0 0
..................................................TCGATCACGAGAACGTCGCAA............................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TGAGATATTCACGTAGTCGAA................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TGAGATATGCACGTCGTCGAA................................................... 21 1 1 2.00 2 0 2 0 0 0 0
..................................................TCGATCACGAGAACGTCGAATC............................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
..................................................TCGATCACGAGAACGTCGCATCTT.......................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
............................................................................................TGAGATATTCACGTCATCGA.................................................... 20 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGATT.................................................. 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGAATTT................................................ 24 3 1 2.00 2 1 0 1 0 0 0
............................................................................................TGAGATATTCACGTCGTCGAC................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGT.................................................... 20 1 1 2.00 2 1 0 1 0 0 0
............................................................................................TAAGATATTCACGTCGTCGAAT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGGTATTCACGTCGTCGAAT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................AGAGATTCACGTCGTCGA.................................................... 18 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTGGAA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCTCGTCGTCGAAA.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTAGATATTCACGTCGTCGA.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCATGTCGTCGA.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTCTTCGTA................................................... 21 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................ATGAGATATTCACGTCGTCGT.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................ATGAGATATTCACGTCGTCGAAACT................................................ 25 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TAAGATATTCACGTCGTCGAA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGACGAAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGAGAACGTCGCAGCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................GATATATTCACGTCGTCGA.................................................... 19 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCACGTCGTCGATT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCACGTCGTCGAATTT................................................ 25 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCATGTCGTCGAAA.................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGAGATCGTCGCATCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCTCGTCGTCGA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGACGAAT.................................................. 22 2 1 1.00 1 0 0 1 0 0 0
...........................................................................................ATCAGATATTCACGTCGTCG..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGAGATTCACGGCGTCGGAA.................................................. 22 3 1 1.00 1 0 0 1 0 0 0
............................................................................................TGAGATATTCACGACGTCGAA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................CCGATCACGAGAACGTCGCA.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGAGAACGTCGCATCTC.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TTAGATATTCACGTCGTCGAG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGAGAAAGTCGCATCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCATGAGAACGTCGCATCT........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TGAGATATTCACCTCGTCGAA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATCCACGTCGTCGAA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGAAATT................................................ 24 2 1 1.00 1 1 0 0 0 0 0
.................................................CTCGATCACGAGAACGTCGCATCT........................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCACGTCGTCGAAAT................................................. 24 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCAAGTCGTCGA.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................ATGATCACGAGAACGTCGCATC............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATAATCACGTCGTCGAA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGTTT.................................................. 22 3 2 1.00 2 2 0 0 0 0 0
............................................................................................TGCGATATTCACGTCGTCGAAC.................................................. 22 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TGAGATATACACGTCGTCGAAA.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TGAGATATTCACGTCGCCGAA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
....................................................GATCACGAGAACGTCACATCT........................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..................................................TCGATCACGAGAACGTGGCATCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACCAGAACGTCGCATC............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCACATCGTCGA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGAGAACATCGCATCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGAAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCAAGTCGTCGAAT.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGAGCACGTCGCAT............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGAGCACGACGCATCT........................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TGAAATATTCACGTCGTCGAAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTTGTCGAAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCGCGTCGTCGA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCCCGTCGTCGAAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTAGAAA.................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..................................................TCGATCACGAGTACGTCGCATCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCAAGTCGTCGAA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGAGAACGTCGCATCTTTAT....................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAATTATTCACGTCGTCG..................................................... 20 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TGAGATATTCACGTCATCGAAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCACGTCGTCGAG................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATACACGTCGTCGAA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TGAGATATTCACGTCCTCGA.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TATGAGATATTCACGTCGTCGA.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TGAGATATTCACGACGTCGAAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCGCGTCGTCGT.................................................... 20 2 1 1.00 1 0 0 1 0 0 0
............................................................................................TGAGATATTCACGTCTTCGAAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGATAACGTCGCATCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGAGTT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATACACGTCGTCGA.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGAGAATGTCGCATCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................CGATATTCACGTCGTCGAAAT................................................. 21 2 1 1.00 1 0 0 0 1 0 0
............................................................................................TGAGATATTCACGACGTAGA.................................................... 20 2 1 1.00 1 0 0 1 0 0 0
..................................................TCGATCACGAGACTGTCGCATC............................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0
..................................................TCGATCACGAAAACGTCGCATCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TCGATCACGAGGACGTCGCAT............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTAGTCGAAAT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCACGTCTTCGATT.................................................. 23 3 1 1.00 1 0 0 0 1 0 0
..................................................TCGATCACGAGAACGTCGCCTCT........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
............................................................................................TGAGATATTCATGTCGTCGAAT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCGAGA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGATATATTCACGTCGTCGAA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATTCACATCGTCGA.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TGAGATATGCACGTCGTCGAAA.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TGAGATATCCACGTCGTCGA.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................TCGATCACGAGAACGTCGCT.............................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TGAGATATTCACGTCGTCAAAA.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATGAGATATTCACGTCGTCGAT................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................GAGATATTCACGTCGTCGT.................................................... 19 1 2 0.50 1 0 1 0 0 0 0
..........CCACAACAGCGAGCCACACG...................................................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 1
.....................................................TCGACGAGAACGTCGCATCT........................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0

Anti-sense strand reads

TCAGGATGGGGGTGTGGTCGCTCCGTGTGCGCATGGCGGCTCCAAGCCGGAGCTAGTGCTCTTGCAGCGTAGAATCAATGTAAAGGTATACTACTCTATAAGTGCAGCAGCTTTGGCACAGAGCCGAACCGGTGGTTAGCGTTCGTATGGATCATGGCCTTCAT

************************************.(((((((..(((..(((((.(((.(((.(((.((((..................)))).))).))).))).)))))..)))..)))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total V055

head

 V105

male body		 V039

embryo
................................................................................................................TTGGCACACCGCCGAGCCGGT............................... 21 3 3 0.33 1 1 0 0
..............TGGTCGATCCGTGTGCCGAT.................................................................................................................................. 20 3 5 0.20 1 1 0 0
..........................GTGCGCACGTCGGCTCCAG....................................................................................................................... 19 3 11 0.09 1 1 0 0
....................................................................GTAGAATCGATGTAGAGG.............................................................................. 18 2 14 0.07 1 0 1 0
.......................................................................................................................................TTAGCGTTCGAGTGGATGA.......... 19 3 17 0.06 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droAna3 scaffold_13417:2467419-2467582 - dan_36 confident AGTCC--T----------------ACCCCCACACCAGCGAG----GC--------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------CACG-----CGTACCGCCGAGGTTCGGCCTCGATCACGAGAACGTC-GCATCTT--AG-----T-TACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCG-GCTT-GGCCACCAATCG-----------CAAGCATACCTAGTACCGGAAGTA
droBip1 scf7180000395874:39803-39947 - AGTCC--T----------------TCCTCCACACCAGCTAC----CC--------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------AACG-----CATACCGCTGAGGTCCGGCCTCGATCACGAGAACGTC-GCATCTT--AG-----T-TACGTTTTCATATGATGAGATA-TTCACGTCGTCGAAACCGTGCCTCG-GC---------GAATCGGAAACACACCTAG----------------------
droKik1 scf7180000302517:1183767-1183948 + GCACC--T----------------ACTCCAGCAACGGCTAT----CCAG-----G-----------------TAACCAG-----CTAAACAGCT-------------------------------ACCCATCTACTCAGCTCCTCTGGGAGTCGA-------G----------G---CTCTA-----------------------------------------------GATG-----CAAACCTCCATGGCACGGTCTGGATTACGAGAATATC-GCACCTT--TG-----ACGCCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAGTCCGTGTCTAG-G---------------------------------------------------
droFic1 scf7180000454073:1733998-1734139 + GCACC--GACCACC--------A--------CATT-----------------TTTTTCTAAGTGCCTAA--------------------------------------------------------TT----------------------------------------------------CCC-----------------------------------------------GCAA-----GTCCAATCCAACATCCGATTTCGACCACGTGGGTATC-ACTCACCTTTCC----GCTCATTTGATATCGGGTGAGATA-TTCACGTCGTTGAATCCGTGTCTTG-G---------------------------------------------------
droEle1 scf7180000490751:1118865-1119002 + AGCCC--T--GCACTGACCAGCA--------GA--------------------------------------------------------------------CCGAC-----------AGATCGTGAT----------------------------------------------------CCA-----------------------------------------------TCCA-----TTCCCCTCCAAGGTATGGACTCGATCACGCGAGTATC-GCACCTT--CC-----T-GCAATCGATAATCGGTGAGATA-TTCACGTCGTCGAATCCATGTCTTG-G---------------------------------------------------
droRho1 scf7180000761121:189947-190111 - AGACT--G----------------ACCTCTCCGCTAGCACCAGATC---CC-AAATCT---------------------------------------------------------------------------------------TAGATCCCGACCCATCCA------------------------------------------------------CTGCCAG-----CATCATCCATTCCACACCAAGGTCTGGCCTCGATCACGCGAGTATC-GCACCTT--CC-----T-GCAATCGATATTCGGTGAGATA-TTCACGTCGTCGAAGCCGTGCCTTG-G---------------------------------------------------
droBia1 scf7180000302069:1150860-1151040 - CTGCACCGACCAAC--------GC-------------C-----------AC-ATACGGTGGGATCCCCAACGTCGCAGTG------------------------------------GGTCCTATGTT---------------------------------CCAGTACTAGTCCAGAC--CTA-----------------------------------------------CCCA-----ATTCACACCAAGGCCTGGCCTCGATCACGCGGGTATC-GCATCT------------GCAACTGATATCTGATGAGATA-TTCACGTCTTCGAAACCAAGCCTTG-GCCA------CGAAT-------------------------------------
droTak1 scf7180000415169:844675-844831 - AACTG--T----------------TCGTCCATA----------------------AGGTGAGA--------------------------------------TCTA---------------------------------------ATGGGTATCGTATTGTCTAATTATTG---A---ATCTT-----------------------------------------------GCTA-----GTTAACCCCAAGGTCTGGCCTCGATCACGCGGATATC-GCATCT------------GCAATTGATATCTGGTGAGATA-TTCACGTCGTCGAAACCATGCCTTG-GCCT------------------------------------------------
droEug1 scf7180000409230:879527-879667 - TACCA--T----------------ATCTTTATATCCATATC-----CATGTCC--AGTGGAAA--------------------------------------TCTA---------------------------------------CAGGC-----------------------------------------------------------------------------------------CACCAACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGCATTT---GC-------ATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGAATTCAAGCCTTG-G---------------------------------------------------
dm3 chrX:19453016-19453151 + dme-mir-977 Known_mirbase CTGCACCTAACAAC--------AT-------------C-----------GC-G------------------------------------------------CCGGG-----------G-------------------------------AATCCC-------A----------A---CACAA-----CGAATCA-----------------------------------------------ACAAACAAGGTATGCTTTAGATAACTCGAATATC-ACATCTT--CA-------GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTG-----------------------------------------------------
droSim2 x:18342626-18342806 + dsi-mir-977 Known_mirbase ACTGC--TGTCAAC--------TT-------------C-----------GC-G------------------------------------------------CAATG-----------G--------------------------------------------A----------ATAC---------------------------------CAA----CTCCGGAGTGCCGAAA-----ATGCATCCCAAGGTATGGTTTAGATAACTCGAATATC-ACATTTT--CA-------GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTG-TTTTTGAAAACT------------ACTCAGATCATATCATATGCCAACAAGA
droSec2 scaffold_8:1735347-1735506 + dse_82 confident AATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------A----------ATAC---------------------------------CAA----CTCCGGAGTGCCGAAA-----ATTCATCCCAAGGTATGGTTTAGATAACTCGAATATC-ACATCTT--CA-------GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTG-TTT--GAAAACT------------ACTCAGATCATATCACATACCAACAAGA
droYak3 X:11885650-11885799 - dya_61 confident GTTCC--T----------------ATTCCTATTCCGATTCC-------------------------------------------------------------------------------------------------------------------------------G--------------ATTCGGAATCAAC--------------CAA----GTGCGGACAGCTCAGA-----GTTCACCCCAAGGTATGGCCTAGATAACACGGGTATC-ACATCTT--TA-----T-GCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTG-----------------------------------------------------
droEre2 scaffold_4690:9688994-9689167 + TGGCACCTACGAAC--------TG-------------A-----------GC-AT------------------------------------------------------------------------------------------TTGGGGATCGG-------G----------ATCC---CGGATTCGGAGTCAACAAACTCTTGTCAAACAAACGA---------G--CAGA-----ATTCAACCCAAGGTATGGCCTAGATAACTCGGGTATC-ACATCTT--TA-----T-GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTG-----------------------------------------------------
droWil2 scf2_1100000004909:7956873-7957030 + dwi_60 confident TTTGT--GAGCAAT--------AT-------------C-----------GT-ATATTGTGCGTGC-----------AGTGTATTGTGATGTGACA------CCGTG-----------G--------------------------------------------A----------CGAT---------------------------------CAA----------------CAAA-----ATTC------ATATACAATTTCAATAACGTAGATATC-GCATCGTTTTTTTTTACCATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTG----------------------------------------------------------
droVir3 scaffold_13042:906574-906745 - dvi-mir-977 Known_mirbase CTGTACCA----------------------GCAACAACAAC----AGGA-----A-----------------TAGCAAC-----GGAAACAGGAACCGGAACAGAAACAGGAAAAAGAAATTGTGTT----------------------------------------------------CCC-----------------------------------------------CCTG-----GC-----C--CAGCCCAGTTGCGATTGCGCGGACATC-TCATCGT--AT-----AAACATTCGATAACCAACGAGATA-TTCACGTTATCGAGACTGAGACGTCGGC--------------------------------------------------
droMoj3 scaffold_6328:2900856-2900995 - dmo_3175 CTGTATCA----------------------GCAACAACAAC-------------------------------------------------------------------------------------------------------------------------------A--------------ACATGAGTTAAAC--------------GAAATGA-----ACCAGTTCGTT----GTTCTGGCC--CAGCCCGGTTCCGATTGCGCGGACATC-TCATCGT--CT-----GACCATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCG----------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
AGTCC--T----------------ACCCCCACACCAGCGAG----GC--------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------CACG-----CGTACCGCCGAGGTTCGGCCTCGATCACGAGAACGTC-GCATCTT--AG-----T-TACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCG-GCTT-GGCCACCAATCG-----------CAAGCATACCTAGTACCGGAAGTASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAA................................................................211226.002262900161738
..................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCATCT.................................................................................................................231179.00179152091449
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGA.................................................................201136.0013633009913
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAA...............................................................221134.00134270041021
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAA................................................................22149.00492003440
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGA.................................................................21133.00333000291
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAT...............................................................22132.00323001253
..................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCAT...................................................................................................................21130.00303105210
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAA...............................................................23123.00233002162
..................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCATC..................................................................................................................22120.00205100140
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCG..................................................................19112.0012200280
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAT...............................................................23111.0011100271
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCG..................................................................20110.00100000100
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAATT..............................................................2318.008000080
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGAAA...............................................................2116.006600000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAAT..............................................................2315.005000041
..................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCA....................................................................................................................2015.005000050
.......................................................................................................................................................................................................................................................................................................................AGATA-TTCACGTCGTCGAA................................................................1913.003300000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAT................................................................2113.003000120
..................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCATCTT--T.............................................................................................................2513.003000111
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGAA................................................................2012.002200000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAATT..............................................................2412.002000020
..................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCAA...................................................................................................................2112.002000020
..................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCATCTT--..............................................................................................................2412.002000020
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGATT...............................................................2212.002000020
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAATTT.............................................................2412.002000110
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAC................................................................2112.002000020
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGT.................................................................2012.002000110
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAG................................................................2111.001000010
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGT.................................................................2111.001000100
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAACT.............................................................2511.001000010
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGATT...............................................................2311.001000010
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAATTT.............................................................2511.001000010
..................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCATCTC--..............................................................................................................2411.001100000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAATT.............................................................2411.001000010
.................................................................................................................................................................................................................................................................CTCGATCACGAGAACGTC-GCATCT.................................................................................................................2411.001000010
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAAT..............................................................2411.001000010
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGTTT...............................................................2221.002000020
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAG...............................................................2211.001000010
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAG................................................................2211.001000010
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAGTT..............................................................2311.001000010
..................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GCT....................................................................................................................2011.001100000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAT................................................................2211.001000010
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGT.................................................................1920.501100000
droBip1
AGTCC--T----------------TCCTCCACACCAGCTAC----CC--------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------AACG-----CATACCGCTGAGGTCCGGCCTCGATCACGAGAACGTC-GCATCTT--AG-----T-TACGTTTTCATATGATGAGATA-TTCACGTCGTCGAAACCGTGCCTCG-GC---------GAATCGGAAACACACCTAG----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCACC--T----------------ACTCCAGCAACGGCTAT----CCAG-----G-----------------TAACCAG-----CTAAACAGCT-------------------------------ACCCATCTACTCAGCTCCTCTGGGAGTCGA-------G----------G---CTCTA-----------------------------------------------GATG-----CAAACCTCCATGGCACGGTCTGGATTACGAGAATATC-GCACCTT--TG-----ACGCCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAGTCCGTGTCTAG-G---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCACC--GACCACC--------A--------CATT-----------------TTTTTCTAAGTGCCTAA--------------------------------------------------------TT----------------------------------------------------CCC-----------------------------------------------GCAA-----GTCCAATCCAACATCCGATTTCGACCACGTGGGTATC-ACTCACCTTTCC----GCTCATTTGATATCGGGTGAGATA-TTCACGTCGTTGAATCCGTGTCTTG-G---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGCCC--T--GCACTGACCAGCA--------GA--------------------------------------------------------------------CCGAC-----------AGATCGTGAT----------------------------------------------------CCA-----------------------------------------------TCCA-----TTCCCCTCCAAGGTATGGACTCGATCACGCGAGTATC-GCACCTT--CC-----T-GCAATCGATAATCGGTGAGATA-TTCACGTCGTCGAATCCATGTCTTG-G---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGACT--G----------------ACCTCTCCGCTAGCACCAGATC---CC-AAATCT---------------------------------------------------------------------------------------TAGATCCCGACCCATCCA------------------------------------------------------CTGCCAG-----CATCATCCATTCCACACCAAGGTCTGGCCTCGATCACGCGAGTATC-GCACCTT--CC-----T-GCAATCGATATTCGGTGAGATA-TTCACGTCGTCGAAGCCGTGCCTTG-G---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CTGCACCGACCAAC--------GC-------------C-----------AC-ATACGGTGGGATCCCCAACGTCGCAGTG------------------------------------GGTCCTATGTT---------------------------------CCAGTACTAGTCCAGAC--CTA-----------------------------------------------CCCA-----ATTCACACCAAGGCCTGGCCTCGATCACGCGGGTATC-GCATCT------------GCAACTGATATCTGATGAGATA-TTCACGTCTTCGAAACCAAGCCTTG-GCCA------CGAAT-------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AACTG--T----------------TCGTCCATA----------------------AGGTGAGA--------------------------------------TCTA---------------------------------------ATGGGTATCGTATTGTCTAATTATTG---A---ATCTT-----------------------------------------------GCTA-----GTTAACCCCAAGGTCTGGCCTCGATCACGCGGATATC-GCATCT------------GCAATTGATATCTGGTGAGATA-TTCACGTCGTCGAAACCATGCCTTG-GCCT------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TACCA--T----------------ATCTTTATATCCATATC-----CATGTCC--AGTGGAAA--------------------------------------TCTA---------------------------------------CAGGC-----------------------------------------------------------------------------------------CACCAACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGCATTT---GC-------ATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGAATTCAAGCCTTG-G---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CTGCACCTAACAAC--------AT-------------C-----------GC-G------------------------------------------------CCGGG-----------G-------------------------------AATCCC-------A----------A---CACAA-----CGAATCA-----------------------------------------------ACAAACAAGGTATGCTTTAGATAACTCGAATATC-ACATCTT--CA-------GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTG-----------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT..................................................................19158925.00589250000000000000000000000054000000000001010150114000010000000000000000000000000001000000000922502432411100210100031451411531022002000000010000000000000000000000010000000000000000120000080201050000001306235900001750362000000000000000001311210000000030020000100150100905039461212421150310813557521711411147110000047207320141401160202000051049532000091309910100020201777435935101514532813680
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA...............................................................22119962.0019962000007002365310000000000281100020000000000011001101010010000000000000000000000001100060142201320534133736432350204903042206172313212148130000000000000120000000000001000010025000000000000000520402140220205200000352208740000440082840000013000004000725000205931502000200000010000031008002000000201194161111112218231433017302011333269010140013208811700050269387500051360161711230009580250
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA................................................................21115814.001581400001200011412960000000000319100000000000000003010000000100000000000000000000000000010149318001742714873150410141008836210431186109646102134374659131754100000010000000000000000000000000005001000000000000150200111020101000000353076280000451054400000000000000000112000001100121000000000000000126006001000002003320110710301004000301081010002264201000007204264000102432213100001405043011000525060
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA.................................................................2018506.0085060000020000010000000000001772000000000010000000000000011000000000000000000000000000000303010136114101383418900061429101417102615281486000000000000100000000000000000000040000000000000001502010140201010000002305031200002660206000000000000000001312000000100000000000001000010006002020100000191131720201000000000010010000202302000003803238010000027203000101704123021000659280
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATC..................................................................................................................2211778.001778000000000003000000000001020000000000000000000000000201000000000000000000000000010000010000001002900700321100116701500000000000000001000000000000000000000300000000000000000010008020003000010021708700001310370000000000000000034002741794251000100000000000009000000100000010414351000101600010106002000020300000006013000000027000000010000010000235160
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACAT...................................................................................................................211658.0065800000000000200000000000660000000000000000000000000000000000000000000000000000010000000000000001000160000040024420900080000000000000000000000000000000000000000000000000010000004000000000000080110000043060000000000000000012000316400800050000000000000200100000000000010173000000000000000010000000000000000200000000106100000000003000000110000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA..............................................................231463.0046300000100000000000000000310000000000000000000000000000000000000000000000000000000000020000001005005001003000000073102000000000000000000000000000000000000000000000000000000000000000000000001002200007017000000000000000000000000100060000000000000000010020000000000000043000000010000000000000000000000000500400100002440000003010000000031020
.........................................................................................................................................................................................................................................................................................TT--CA-------GTGTTCGAAATCTGA......................................................................................191454.0045400000000000000000000000100000000000000001000000000000000000000000000000000000000100000000010019019000000001003010010400000000000000000000000000000000006000000000000000010000010000000000000000000000000000000000000000100000000000000100000000000001000000000010000101571000000000000002001000001400000003014000000011300000010000000000101000
................................................................................................................................................................................................CA-----------------------------------------------ACAAACAAGGTATGCTT.........................................................................................................................................191324.0032400000000000000000000000480000000000001000000000000000000000000000000000000000000000000000000002100000000001000000000000000000000000000000000000000001010000000000000000000000000000000000001201300001101100000000000000000001000000000000000000000000001001010000000000108600100000000000010010000201000000030210001000900010001010100000023010
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCT..................................................................201242.002420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000002020000103000000000000000000000000000010000000000000000000000010010000000015000000000000000100000000000000000000100000009300001000010001000116010
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACA....................................................................................................................201162.00162000000000002100000000006000000000000000000000000000000000000000000000000000000000000000000000100100001020001206000110000000000000000000000000000000000000000000000000001000000000000000000001202000080000000000000000000010000000001000000000000000000000000000000000005400000000000000000000000000000000010000000000100000000000100000028000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT................................................................211161.0016100000000000200000000000470000000000000000000000000000000000000000000000000000000000000000000002003000010000101000000000000000000010000000000000000000000000000000000000000000100000000000013090000801300000000000000000000100000000000000000000000001000000000000000001200000000000000000000000000000000000110000000370000002000000000012010
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTC...................................................................18188.00880000000000000000000000010000000000000000000010000000000000000000000000000000000000000000100000100000000000000001000000000000000000000000000000000000000000000000000000030000000000000000000102000040200000000000000000000000000000000000000000000000000000000000000202900000000000000000000000001010000010000000010100000000010000000016000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCC..................................................................19187.00870000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080010000000000000000000000000000000000000000000000000000000000076000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAA...............................................................21167.006700000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000030000000000000000000000000000100000000000000000000000000000001000140000000000000000000000000000000000000000000035000000000000000005000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAT..............................................................23166.0066000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100030020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100001080000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000025000000000000000001000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT...............................................................22164.006400000000000100000000000170000000000000000000000000000000000000000000000000000000001000000001000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000002000000010000000000000000100000000000000000000000000000000000000080000000000000000000000000000000000000000000023000000000010000005000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTA.................................................................21160.006000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030400001020000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000100000000001000000027000000000000000001000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCT..................................................................18160.00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000030000003000100000045000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAC...............................................................22156.005600000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000001001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000003000000000000000000000000000020000000000000000000000000000000000070000000000000000000000000100000003001000000014000100000000000009000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAATC.............................................................24155.005500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAC................................................................21151.00510000000000010000000000090000000000000000000000000000000000000000000000000000000000000000000001400100000100000000000001000000000000000000000000000000000000000000000000000000000000000000000101000010200000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000200300000007000000000000000003000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAA................................................................22133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002000000000000020000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000100019000000000000000001000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAG................................................................21126.00260000000000030000000000010000000000000000000000000000000000000000000000000000000000000000000200000000000200000000000200000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000001000000000000000000000
...............................................................................................................................................................................................TCA-----------------------------------------------ACAAACAAGGTATGCTT.........................................................................................................................................20126.00260000000000010000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000100000000000000000011000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAA................................................................20125.0025000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000300200000000000001000000000000000000000000000000000000000000000000000000000000000000000000000102000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000100000000002000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAA...............................................................23124.00240000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000003000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000100000000000000000010000000000000000002000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAATC............................................................25123.00230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA.................................................................19122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000105000000000000000000000000000000000000100000007000000000000000002000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAG...............................................................22121.0021000010000001000000000006000000000000000000000000000000000000000000000000000000000000000000000100000010000000002000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000002000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATCTT--C.............................................................................................................25117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000020000000000000000000000000000001000000000000100001000000000000000004000000000000000000000001000000000000000000002000000000000000003000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATCT.................................................................................................................23116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000030000000000000000000000001000000000000000000000001000000000000000005000000000000000000000000000000000000000000002000000000000000003000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAAA.............................................................24116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000010000000000010000001000
.........................................................................................................................................................................................................................................................................................TT--CA-------GTGTTCGAAATCTG.......................................................................................18115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000003000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTG.................................................................20115.0015000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000004000000000000000001000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCA..................................................................19114.0014000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000001000000000000000007000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC.....................................................................................................................19114.0014000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000108000000000000000000000000000000000000000000000000000000000000002000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTATC...............................................................22113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTC.................................................................20111.0011000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000100000000002000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTT.................................................................20111.0011000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000003000000000000000002000
.................................................................................................................................................................................................A-----------------------------------------------ACAAACAAGGTATGCTT.........................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000100000000000000100000000002000000000010000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCG..................................................................19110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000100100000000000000000000000003000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATCTT--..............................................................................................................24110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000010100000000000000000000000001000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000002000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAAA..............................................................22110.0010000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC..............................................................2317.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000003000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATCA.................................................................................................................2317.007000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
.........................................................................................................................................................................................................................................................................................................................ATA-TTCACGTTGTCTAAA...............................................................1816.006000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000002000000000000000000000
........................................................................................................................................................................................................................................................................................................................GATA-TTCACGTTGTCTAAATC.............................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ATCA-----------------------------------------------ACAAACAAGGTATGCTT.........................................................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000003000000000000000001000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAATC..............................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTGTCTAA................................................................1914.004000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAG..............................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATT..................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TT--CA-------GTGTTCGAAATCTGATC....................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TA-TTCACGTTGTCTAAATC.............................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTCC................................................................2114.004000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTATT...............................................................2214.004000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
droSim2
ACTGC--TGTCAAC--------TT-------------C-----------GC-G------------------------------------------------CAATG-----------G--------------------------------------------A----------ATAC---------------------------------CAA----CTCCGGAGTGCCGAAA-----ATGCATCCCAAGGTATGGTTTAGATAACTCGAATATC-ACATTTT--CA-------GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTG-TTTTTGAAAACT------------ACTCAGATCATATCATATGCCAACAAGASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA................................................................2112553.00255302011954311222100557000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA.................................................................201577.00577010039281421100167000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTC...................................................................181295.002950000291300000001000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAA................................................................221275.002750130018111200310064000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT..................................................................191218.0021800001684200020042000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA...............................................................221217.00217070123028141823100102000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC..............................................................231183.001830000179400000000000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTA.................................................................211110.0011011700622200000026000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATT..................................................................................................................22154.00540160032001010004000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAA...............................................................23140.0040020010727110019000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA..............................................................23133.0033000000231460008000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCT..................................................................20132.0032070020001000004000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTC...................................................................19130.0030000029000000001000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACAT...................................................................................................................21128.0028000025000000003000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACA....................................................................................................................20128.0028000027000000001000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATTTT--..............................................................................................................24124.0024018000000110004000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATTT.................................................................................................................23117.0017030010101000002000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAA................................................................20116.0016000016000000000000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGT....................................................................18115.0015000015000000000000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATTTT--C.............................................................................................................25113.001304007010000001000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC.....................................................................................................................19113.0013000013000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT................................................................21111.0011000000000000011000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA.................................................................1916.00600014000000001000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAAC..............................................................2415.00500005000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTT.................................................................2015.00500000000000005000
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-A......................................................................................................................1814.00400004000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCA..................................................................1913.00300000000000003000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAAA.............................................................2413.00300000000000003000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTT.................................................................2112.00200000000000002000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAAC..............................................................2212.00200002000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCT..................................................................1812.00200002000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT...............................................................2212.00200000000000002000
...............................................................................................................................................................................................................................................TGCATCCCAAGGTATGGTT.........................................................................................................................................1912.00200002000000000000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCC..................................................................2012.00202000000000000000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAAA..............................................................2412.00200000000010001000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAACC.............................................................2412.00200002000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................TT--CA-------GTGTTCGATATCTGA......................................................................................1911.00100000000000001000
........................................................................................................TG-----------G--------------------------------------------A----------ATAC---------------------------------CAA----CTCCGGAGTG........................................................................................................................................................................2111.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAACA..............................................................2311.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAG...............................................................2211.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAG................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTT......................................................................1511.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................TGGTTTG-TTTTTGAAAACT------------ACTCAGA.....................2611.00100000000100000000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCG..................................................................2011.00101000000000000000
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTA...................................................................1911.00100000000000001000
droSec2
AATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------A----------ATAC---------------------------------CAA----CTCCGGAGTGCCGAAA-----ATTCATCCCAAGGTATGGTTTAGATAACTCGAATATC-ACATCTT--CA-------GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTG-TTT--GAAAACT------------ACTCAGATCATATCACATACCAACAAGASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA...............................................................221107.0010739662
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT..................................................................19182.00822151451
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA.................................................................20137.003703601
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA................................................................21133.003313002
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACATC..................................................................................................................2218.0081601
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA..............................................................2315.0051301
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACAT...................................................................................................................2113.0030210
..................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-ACA....................................................................................................................2013.0031101
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT................................................................2112.0020200
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAA...............................................................2111.0011000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA.................................................................1911.0011000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT................................................................2111.0010100
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT...............................................................2211.0010100
droYak3
GTTCC--T----------------ATTCCTATTCCGATTCC-------------------------------------------------------------------------------------------------------------------------------G--------------ATTCGGAATCAAC--------------CAA----GTGCGGACAGCTCAGA-----GTTCACCCCAAGGTATGGCCTAGATAACACGGGTATC-ACATCTT--TA-----T-GCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTG-----------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA...............................................................22150.0050140001440000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT..................................................................19124.0024010026150000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA.................................................................20117.0017010000160000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA................................................................21116.0016000001150000
..................................................................................................................................................................................................................................................................TAGATAACACGGGTATC-ACAT...................................................................................................................2115.00501000030010
..................................................................................................................................................................................................................................................................TAGATAACACGGGTATC-ACATC..................................................................................................................2215.00512100010000
.................................................................................................................................................................................................................................................................CTAGATAACACGGGTATC-ACAT...................................................................................................................2212.00200000020000
..................................................................................................................................................................................................................................................................TAGATAACACGGGTATC-ACA....................................................................................................................2012.00200001010000
.................................................................................................................................................................................................................................................................CTAGATAACACGGGTATC-ACA....................................................................................................................2112.00200000110000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC..............................................................2311.00110000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT................................................................2111.00100000010000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAC................................................................2111.00100000010000
droEre2
TGGCACCTACGAAC--------TG-------------A-----------GC-AT------------------------------------------------------------------------------------------TTGGGGATCGG-------G----------ATCC---CGGATTCGGAGTCAACAAACTCTTGTCAAACAAACGA---------G--CAGA-----ATTCAACCCAAGGTATGGCCTAGATAACTCGGGTATC-ACATCTT--TA-----T-GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTG-----------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-ACAT...................................................................................................................2118.0080020510
..................................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-ACA....................................................................................................................2017.0070000610
.....................................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCTA.................................................................2116.0060000510
.....................................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCT..................................................................2014.0040000220
...............................................................................................................................................................................................................................................TTCAACCCAAGGTATGGCC.........................................................................................................................................1912.0020000110
..................................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-ACATCT.................................................................................................................2311.0010000100
..............................................................................................................................................................................................................................................ATTCAACCCAAGGTATGGCC.........................................................................................................................................2011.0010000100
..................................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-ACATC..................................................................................................................2211.0010000010
.....................................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTC...................................................................1911.0010000100
.....................................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCTAAA...............................................................2311.0010000010
.....................................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGT....................................................................1811.0010000010
droWil2
TTTGT--GAGCAAT--------AT-------------C-----------GT-ATATTGTGCGTGC-----------AGTGTATTGTGATGTGACA------CCGTG-----------G--------------------------------------------A----------CGAT---------------------------------CAA----------------CAAA-----ATTC------ATATACAATTTCAATAACGTAGATATC-GCATCGTTTTTTTTTACCATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTG----------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAG...............................................................221330.003301102862112
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGA.................................................................201264.002641025715
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAA................................................................211129.001290112134
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGT..............................................................23179.00793064210
..................................................................................................................................................................................................................................................................TCAATAACGTAGATATC-GCATC..................................................................................................................22118.001870920
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAA...............................................................22117.0017001700
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGA..............................................................2319.00901710
..................................................................................................................................................................................................................................................................TCAATAACGTAGATATC-GCAT...................................................................................................................2116.00630300
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTG..................................................................1915.00500401
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAT................................................................2115.00500500
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAT...............................................................2214.00400400
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGTT.............................................................2413.00300300
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTTGA.................................................................1913.00300300
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTTGAAG...............................................................2112.00200200
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGG.................................................................2011.00100100
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAAA..............................................................2311.00100100
....................................................................................................................................................................................................................................................................AATAACGTAGATATC-GCATC..................................................................................................................2011.00100100
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGT.................................................................2011.00100100
................................................................................................................................................................................................................................................................................................................AGAGATGAGATA-TTCACGTTGT....................................................................2211.00100100
..................................................................................................................................................................................................................................................................TCAATAACGTAGATATC-GCAG...................................................................................................................2111.00110000
droVir3
CTGTACCA----------------------GCAACAACAAC----AGGA-----A-----------------TAGCAAC-----GGAAACAGGAACCGGAACAGAAACAGGAAAAAGAAATTGTGTT----------------------------------------------------CCC-----------------------------------------------CCTG-----GC-----C--CAGCCCAGTTGCGATTGCGCGGACATC-TCATCGT--AT-----AAACATTCGATAACCAACGAGATA-TTCACGTTATCGAGACTGAGACGTCGGC--------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGA...............................................................22117315.0017315150290246478601981000301170451100129755593811144743112271020245410000000000000100030105507200081100100000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAG................................................................21115065.001506510190864636506400003000406211016344376731521149399534810011010310000000000000000030012301000020000200000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATC..................................................................................................................221957.0095740700221206000000000054000000022120811723404300000250000000000000000000001000020010000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCAT...................................................................................................................211582.0058200000611000000000000270000000140130571790210000017000000000000000000000100010000000010000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGT...............................................................221582.00582000004201209000000000052000000010795411370300000053000000000000000000000400000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGA.................................................................201542.00542101002313050000000000120000000127125531260211000043000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCG..................................................................191453.00453002004103080000000000380000010707624800500000059000000000000000000000100000000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGA...............................................................211140.0014000200001000000000000500000003735193403000004000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCA....................................................................................................................201124.001240000010000000000000070000000333083107000006000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAT..............................................................231115.001150000030100000000000060000000332073801000006000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAG................................................................201111.0011100000800000000000000500000002925122206000003000000000000000001000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAA..............................................................231102.001021010050103000001001020000000241692501000004000000000000000000000004010011100000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCG.................................................................................................................231100.0010010000401070000000000110000000181962205000003000000000000000000000300000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGC...............................................................22157.0057000009000100000000001400000008434040000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAC................................................................21134.00340000000000000000000080000000744603000002000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCGT--A.............................................................................................................25132.00320000000001000000000000000000883604000001000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGATC.............................................................24127.002700000000000000000000100000005331203000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATC...................................................................18125.00250000040001000000000000000000610600000007000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGAGA...............................................................23118.00180010000100000000000000000000522601000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ATA-TTCACGTTATCGAGACTGA...........................................................22117.00172000000000000000000010000000330301000003000000000000000000000100000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATT..................................................................................................................22117.00170000010000000000000000000000263301000000000000000000000000000000000010000000000
....................................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGAG................................................................22117.00170000020001000000000000000000324500000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAT................................................................21116.00160000000000000000000060000000120303000001000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCT.................................................................................................................23114.00140000000000000000000000000000353101000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAC..............................................................23112.00120000010000000000000030000000131300000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAAA.............................................................24112.00120000000000000000000000000000430310010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAA................................................................21111.00110000010000000000000030000000230101000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGTTC.............................................................24110.00100000000000000000000020000000041300000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCC..................................................................1919.0090000000000000000000000000000411200000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGG...............................................................2218.0082000000000000000000000000000011200000002000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGTC................................................................2118.0080000010000000000000010000000010201000002000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GATA-TTCACGTTATCGAGA...............................................................1916.0060000000000000000000000000000220200000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAG..............................................................2316.0060000000000000000000020000000010100000001000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGTT..............................................................2315.0050000000000000000000000000000012002000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAGA...............................................................2014.0040000020000000000000000000000110000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC.....................................................................................................................1914.0040000010100000000000000000000000002000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ATA-TTCACGTTATCGAGA...............................................................1814.0040000000000000000000000000000101100000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGC.................................................................2013.0030000010000000000000010000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCG..................................................................2013.0030000000000000000000010000000101000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCC.................................................................................................................2313.0030000000000000000000000000000110100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCGT--C.............................................................................................................2513.0030000010000000000000000000000110000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GATTGCGCGGACATC-TCATC..................................................................................................................2013.0030000000000000000000000000000010200000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGATCT............................................................2513.0030000000000000000000000000000000300000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GATTGCGCGGACATC-TCAT...................................................................................................................1913.0030000000000000000000000000000100200000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TTC....................................................................................................................2013.0030000020000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGA.................................................................2113.0030000000000000000000000000000200100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCC....................................................................................................................2012.0020000000000000000000010000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGT...............................................................2112.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATTT.................................................................................................................2312.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGACC.............................................................2412.0022000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGACC...............................................................2212.0020000000000000000000020000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCGT--..............................................................................................................2412.0020000000000000000000000000000020000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATCA.................................................................................................................2312.0020000000000000000000000000000100001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGA.................................................................1912.0020000000000000000000000000000200000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAAG.............................................................2412.0020000010000000000000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCATA..................................................................................................................2212.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CGATTGCGCGGACATC-TCAT...................................................................................................................2012.0020000000000000000000000000000010000000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGATC.............................................................2312.0020000000000000000000000000000000200000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TGCGATTGCGCGGACATC-TCA....................................................................................................................2112.0020000000000000000000000000000010100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGCT................................................................2122.0040000000000000000000030000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GATA-TTCACGTTATCGAG................................................................1812.0020000000000000000000000000000000200000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAT................................................................2011.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCAG.................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGATC...............................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TT.....................................................................................................................1911.0010000000001000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TCAA...................................................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGATG...............................................................2211.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTGCGATTGCGCGGACATC-TC.....................................................................................................................2111.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCCC.................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGAT..............................................................2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................CC-----------------------------------------------CCTG-----GC-----C--CAGCCCAGTT.........................................................................................................................................1911.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCG..................................................................1811.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTGCGATTGCGCGGACATC-TCA....................................................................................................................2211.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GATA-TTCACGTTATCGAGACGA............................................................2211.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TGCGATTGCGCGGACATC-TCATC..................................................................................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAG................................................................1911.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
droMoj3
CTGTATCA----------------------GCAACAACAAC-------------------------------------------------------------------------------------------------------------------------------A--------------ACATGAGTTAAAC--------------GAAATGA-----ACCAGTTCGTT----GTTCTGGCC--CAGCCCGGTTCCGATTGCGCGGACATC-TCATCGT--CT-----GACCATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCG----------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGA...............................................................221473.004736117166382
..................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATC..................................................................................................................22199.009914020281
..................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCAT...................................................................................................................21146.00467002136
..................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCA....................................................................................................................20134.00344020028
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAG................................................................21122.00227000411
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGAA..............................................................2316.006100104
..................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATCG.................................................................................................................2316.006100005
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGT...............................................................2216.006100005
......................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGA...............................................................2114.004400000
..................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATT..................................................................................................................2214.004000004
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGAT..............................................................2313.003100002
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGA.................................................................2013.003000003
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGA...............................................................2312.002100001
..................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TTC....................................................................................................................2011.001000001
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGAT..............................................................2411.001100000
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGG...............................................................2211.001000001
..................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATCC.................................................................................................................2311.001000001
.......................................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAGA...............................................................2011.001100000
..................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCAG...................................................................................................................2111.001000001
..................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATG..................................................................................................................2211.001000001
.....................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGC...............................................................2211.001000010
....................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGT...............................................................2311.001000001
..................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TCATCT.................................................................................................................2311.001000001

Generated: 10/20/2015 at 07:48 PM