ID:

dan_344

 Coordinate:

scaffold_12586:569079-569229 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dana_GLEANR_4730:1]; CDS [Dana\GF21502-cds]; intron [Dana\GF21502-in]

Repeatable elements

NameClassFamilyStrand
Hoana3DNAhAT-hobo+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATTCCTGGAGTCGGATCCCAGAGCAGTCAAGGCCATTCACGAAGTTAGAGGTGGGCATGGGCTGAATTTTTCGACATGGCCCAACATAGCAAGCACGCACACGGACGGCCAAAAATTTTGCCAACACGACCCAACACGAAATATAATATTTACATTATTTATTTTTTTAGGCATAGATATTTATATTTTATAATAAAATTAAAGTATCTTAACACATATTGTATTTTATACGTATATGTAGGAAAATCTTA
**************************************************.((((....(((.(((((((......(((((.......((......))........)))))))))))).))).......))))....(((((((((((((((..(((..........)))...)))))).)))))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V055
head
 V106
head
.......................................................................................................................................................ACGTTATTTATTTTTTTAG................................................................................. 19 1 2 0.50 1 1 0 0 0
......................................................................................TGGCCAGTACGCACACGGAC................................................................................................................................................. 20 3 8 0.13 1 0 0 1 0
...........CGGATCCCAGAGCAGTCAAGG........................................................................................................................................................................................................................... 21 0 20 0.10 2 0 2 0 0
................................................................................................................AAATTTAGCCAAAAGGACCC....................................................................................................................... 20 3 19 0.05 1 1 0 0 0
.................................................................................................................AATTTTACCTACACCACCCA...................................................................................................................... 20 3 19 0.05 1 1 0 0 0
................CCCAGAGCAGTCAAGGCCAT....................................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0
...............TCCCAGAGCAGTCAAGGCC......................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 1
..........TCGGATCCCAGAGCAGTCAAGGCCAT....................................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0
...............GCCCAGAGCAGGCAAGGC.......................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0

Anti-sense strand reads

TAAGGACCTCAGCCTAGGGTCTCGTCAGTTCCGGTAAGTGCTTCAATCTCCACCCGTACCCGACTTAAAAAGCTGTACCGGGTTGTATCGTTCGTGCGTGTGCCTGCCGGTTTTTAAAACGGTTGTGCTGGGTTGTGCTTTATATTATAAATGTAATAAATAAAAAAATCCGTATCTATAAATATAAAATATTATTTTAATTTCATAGAATTGTGTATAACATAAAATATGCATATACATCCTTTTAGAAT
**************************************************.((((....(((.(((((((......(((((.......((......))........)))))))))))).))).......))))....(((((((((((((((..(((..........)))...)))))).)))))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V039
embryo
 M058
embryo
 M044
female body
 V055
head
 V106
head
........................................................................................CGTTCTTGCGTGTGTCTGCCA.............................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0
..........................................TCAATCTCCACCCGTACCCGACTTA........................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0
..............................................................................................................................................................................................................AGCATTGTGTATCACATAAAG........................ 21 3 1 1.00 1 0 0 0 1 0
.......CTCAGCATAGGGTCTCGTCCGT.............................................................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0
.....ACCTCAGCCTATGGTCTCTTCATT.............................................................................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0
.........................CACTACCGGTAAGTGCTTC............................................................................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0
..........AGCCTAGGGTCTCGTCAGTTCCGG......................................................................................................................................................................................................................... 24 0 20 0.20 4 0 1 3 0 0
.................................................CCACCCGTACCCGACTTAAAAAGCT................................................................................................................................................................................. 25 0 20 0.15 3 0 3 0 0 0
..............................................................................................................................................................................................................AGCATTGTCTATCACATAAAA........................ 21 3 7 0.14 1 0 0 0 1 0
.................................................................................................................................GGGTTGTGCTTTATATTATAAATGT................................................................................................. 25 0 8 0.13 1 0 1 0 0 0
.....................................................................................................................................TGTGCTTTATATTATAAATGTAATAAAT.......................................................................................... 28 0 9 0.11 1 0 1 0 0 0
.............CTAGGGTCTCGTCAGTTCCGGT........................................................................................................................................................................................................................ 22 0 20 0.10 2 0 2 0 0 0
.................................................CCACCCGTACCCGACTTAAGAAGCT................................................................................................................................................................................. 25 1 20 0.10 2 0 2 0 0 0
................................................TCCACCCGTACCGGACTTAAA...................................................................................................................................................................................... 21 1 20 0.05 1 0 0 1 0 0
..............CAGGGTCTCGTCAGTTCCGGT........................................................................................................................................................................................................................ 21 1 20 0.05 1 0 1 0 0 0
.................................................CCACCCGTACCCGACTTAAAAAGGT................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0
...............AGGGTCTCGTCAGTTCCGGTA....................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1
............GTTAGGGTCTCGTCAGTTCCGGT........................................................................................................................................................................................................................ 23 2 20 0.05 1 0 1 0 0 0
..........AGCCTAGGGTCTCGTCATT.............................................................................................................................................................................................................................. 19 1 20 0.05 1 0 1 0 0 0
..............................................TCTCCACCCGTACCCGACTTA........................................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0 0
............CCTAGGGTCTCGTCAGTTC............................................................................................................................................................................................................................ 19 0 20 0.05 1 0 0 0 1 0
...........GCCTAGGGTCTCGTCAGTTCCGGT........................................................................................................................................................................................................................ 24 0 20 0.05 1 0 0 1 0 0
.................................................................................................................................................................AAAAAAATACGTACCTAT........................................................................ 18 2 20 0.05 1 0 1 0 0 0
..............................................TCTCCACCCGTACCCGACCTC........................................................................................................................................................................................ 21 2 20 0.05 1 0 1 0 0 0
...............................................CTCCACCCGTACCCGACTT......................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
............CCTAGGGTCTCGTCAGTTCCGG......................................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0
..............................................TCTCCACCCGTACCCGACTTAAAAAGGT................................................................................................................................................................................. 28 1 20 0.05 1 0 1 0 0 0
..............................................................................................GGCGTGTGCCTCCAGGTTT.......................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0
..........AGCCTAGGGTCTCGTCAGTTCCG.......................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.................................................CCACCCGTACCCGACTTAAAAAGCTTT............................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
................GGGTCTCGTCAGTTCCGGT........................................................................................................................................................................................................................ 19 0 20 0.05 1 0 0 1 0 0
...............................................CTCCACCCGTACCCGACTTAAAAAGCT................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0
..........AGCCTAGGGTCTCGTCAGTTC............................................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 1 0 0
............CCTAGGGTCTCGTCAGTTCCGGTAGG..................................................................................................................................................................................................................... 26 1 20 0.05 1 0 0 1 0 0
...................................................ACCCGTACCCGACTTAAAAAGCTGT............................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
.................................................CCACCCGTACCCGACTTAAAAAGCTGT............................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................CCAAGATTATTTTAATTTCAT............................................. 21 3 20 0.05 1 0 1 0 0 0
..........AGCCTAGGGTCTCGTCAGT.............................................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 1 0 0
.....................................................CCGTACCCGACTTAAAAAGCT................................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0
..........AGCCTAGGGTCTCGTCAGTT............................................................................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 1
...................................................ACCCGTACCCGACTTAAAAAG................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_12586:569029-569279 - dan_344 ATT--------------CC-----------------------------TGGAGTCGGATCCCAGAGCAGTCAAGGCCATTCACGAAGTTAGAGGTGGGCATGGGCTGAATTTTTCGACATGGCCCAACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAGCACGCACACGG-ACG------------------G--CCAAAAATTTTGCCAACACGACCC-----------AACACGAAATATAATATTTACATTATTTATTTTTTTAGGCATAGA---------TATTTATAT----------TTTATAATAAAATTA------A-----AGTATCTTAACACATATTGTATTTTATACGTATATGT--AG--GAA--------AAT-CTTA
droBip1 scf7180000394845:12359-12575 + AGG--------------TA-----GAGATGGGCGCAGGCCTAAATTT-----------------------TGAGGCCCGGCCCGA------------------------------------------TAAAATTTCTTATTTTATTTCTGAAACAAATTAAAATTAAATAAAAAGTTTGATAAGATTGTTAACACAATACGAAAAATTCATTTTTTTAATGGGCAGCTTATATTTTTAATAAAATAATTTAAAAATACATAATTGTTCTTAATTATGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTAATT--AA--GAA--------CTT-CTTA
droKik1 scf7180000302405:13174-13374 - GAA--------------AT---TAGAGGTGGGCGCGGGCCTGTATTTTGAGGCCCGGGCCCGC-----------------------------------------------------------------ACGAACACGAACTCTTTTT---------------------TAAGAGGC------------------------------------------------------------------------------------------------------------------CCGGCCCGCACGAACACGAAACTTTTTTACCAAGGCCCGGGCCC------------------------GGCCCGGCC-CG-CACGAAACT---TATTTA---------------CACATATAAG---------A------------AAAT--------------TTAAAAGACATGC----------------------AATTTATAGGTATATAT--AA--GTA--------CATATTTA
droFic1 scf7180000452364:20738-20779 + GTT--------------TC-----------------------------GGGATTCGGATCCGAGGGCAGTCAAGGCCATCATCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491034:7951-7958 - AAT--------------CT-----------------------------TGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777600:6302-6343 + GTT--------------TC-----------------------------GGGATTCGGATCCGAGGGCAGTCAAGGCCATCATCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301695:1568-1789 - AGAAGAGTCAGAATCATCAGACTAGAGGTGGGCGCGGGCCTGTATTTTGGGGCCCGGGCCCGCACGAAAACAAAATCTTTTTTGA--------------------------------------------------------------------------------------GAGGC------------------------------------------------------------------------------------------------------------------CCGGCCCGGCCGAACACGAAACTTTTTC-GCAAGGCCCGGGCCC------------------------GGCCCGGCC-CGACACGAAACT---TATTTA---------------CACATATTAC---------G------------AAAT--------------TTAAAAGACATGT-------TA-----------TTTATGTATACATATTTAT--AA--GTT--------CATATTTA
droTak1 scf7180000415373:3784-3990 - GAG--------------AC---TAGAGATGGGCGCGTGTCAACATTT-----------------------------------------------------------------CTCAACACGACACAGCACGAACACGAA---------------------------------------------------------------------------------------------------------------------------------------------ACTCGAGTTGCCAGCAAGCACGAACACGAAACAAT--------------------TAAATAATTTTAAAACACGACACGACACGAACACG-CACGAAAT----------------------------------AAAAATATATATTTTATAAATTT---TTT-------T-------ATTTTAATATAG----ATT-----------TTTTTTGGTTATTA--AACA-GT--TGG--------AT-ATTTT
droEug1 scf7180000409145:14352-14436 + GTT--------------TT-----------------------------TGGATTCAGATCCGAGGTCAGTCAAGGCCACCATCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCATTACGTCG-------------------ATGACCATG---------------TGGACTTTTTC------------------------GAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTC
dm3 chrU:2856091-2856132 - GTT--------------TC-----------------------------TGGATTCGGATCCGAGAGCTGTCAAGGCTATCACCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 node_129625:2373-2414 + GTA--------------TC-----------------------------GGGATTCGGATCCGAGAGCGGTCAAGGCCATCACCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_70:27419-27496 + ATT--------------TT-----------------------------TTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT----------------TAAAGTATGTC-----------------GG---TTTTCT-------T-------ATAATTATATTT----CTT-----------ATATTTTGTACACAAAGCT--AG--TTG--------AT-TCCAA
droYak3 v2_chrUn_709:61662-61747 - TTA--------------GC-----------------------------TATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAGAAATTGC---------AATTCATAG----------TTTTTTATAAATTTG------A-----GCTATTG-----------TTTTTCTAGACTCCAATAT--AG--CTA--------TAT-CTTC
droEre2 scaffold_4929:22338709-22338748 + GTT--------------TC-----------------------------GGGATTCGGATCCGAGAGCAGT--AGGCCATCACCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_singleton_2485:1269-1337 - ATT--------------GG--------------------------------TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---------------TTCTGGACATGTGGATGTATATTTTTTATAAATAT---TT--------------AA------A-----CATAT------------------------------TT--TA--ATA--------CGT--ATT
droPer2 scaffold_398:7533-7574 + GTT--------------TC-----------------------------GACATTCGGATCCAAGAGCAGTCAAGGCCATCAACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:755229-755428 - TA----------------------GAGATGGGCATGGACTGCAATTT-----------------------------------------------------------------TTCGGTCCAGTCCAACACGGTCCAAAA---------------------------------------------------------------------------------------------------------------------------------------------TTGAAAATTCCAAACACGCACG-----------------------------C--TCCAAAATTTTGGAAACACGACCC-----------AACACGAAATT---TTT---------------TACTTGATTTTTGTTTTTACTTTTTTTTCATATTT---TA--------------TT------A-----AGTTT----CCACG------TTTTTG--CGTT--CAATTTTCAATATGTCTAACAAT-CATA
droVir3 scaffold_12936:333721-333763 + GTT--------------TC-----------------------------AGGATTCAGATCCTGGTGCGGTTAAAGCTATTCGTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droMoj3 scaffold_2602:965-1152 + ATT--------------CATAATAGAGGTGGGCACGGGCCGAATTTT-----------------------------------------------------------------TTGCACTCGGCCCGATCCGCCCACGG--------------------------------------------------------------------------------------------------------------------------------TCAGAAG-------TTCAAAAT-TTTAT-------------------------CATACCCGCCCGCCC------------------------GAAACAATT-AC-AACAAATTT---AATTC---------------TCAAACATTAC---------AATTTTTT-----------TTTCTCAAAAA------TAACAACA----------------------ATTTTATTCTTA--AAAATTACAATA--------TT-ATTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ATT--------------CC-----------------------------TGGAGTCGGATCCCAGAGCAGTCAAGGCCATTCACGAAGTTAGAGGTGGGCATGGGCTGAATTTTTCGACATGGCCCAACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAGCACGCACACGG-ACG------------------G--CCAAAAATTTTGCCAACACGACCC-----------AACACGAAATATAATATTTACATTATTTATTTTTTTAGGCATAGA---------TATTTATAT----------TTTATAATAAAATTA------A-----AGTATCTTAACACATATTGTATTTTATACGTATATGT--AG--GAA--------AAT-CTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................CGGATCCCAGAGCAGTCAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
...........................................................CCCAGAGCAGTCAAGGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
..........................................................TCCCAGAGCAGTCAAGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
.....................................................TCGGATCCCAGAGCAGTCAAGGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
droBip1
AGG--------------TA-----GAGATGGGCGCAGGCCTAAATTT-----------------------TGAGGCCCGGCCCGA------------------------------------------TAAAATTTCTTATTTTATTTCTGAAACAAATTAAAATTAAATAAAAAGTTTGATAAGATTGTTAACACAATACGAAAAATTCATTTTTTTAATGGGCAGCTTATATTTTTAATAAAATAATTTAAAAATACATAATTGTTCTTAATTATGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTAATT--AA--GAA--------CTT-CTTASizeHit CountTotal NormTotal
No Reads
droKik1
GAA--------------AT---TAGAGGTGGGCGCGGGCCTGTATTTTGAGGCCCGGGCCCGC-----------------------------------------------------------------ACGAACACGAACTCTTTTT---------------------TAAGAGGC------------------------------------------------------------------------------------------------------------------CCGGCCCGCACGAACACGAAACTTTTTTACCAAGGCCCGGGCCC------------------------GGCCCGGCC-CG-CACGAAACT---TATTTA---------------CACATATAAG---------A------------AAAT--------------TTAAAAGACATGC----------------------AATTTATAGGTATATAT--AA--GTA--------CATATTTASizeHit CountTotal NormTotal
No Reads
droFic1
GTT--------------TC-----------------------------GGGATTCGGATCCGAGGGCAGTCAAGGCCATCATCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAT--------------CT-----------------------------TGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTT--------------TC-----------------------------GGGATTCGGATCCGAGGGCAGTCAAGGCCATCATCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGAAGAGTCAGAATCATCAGACTAGAGGTGGGCGCGGGCCTGTATTTTGGGGCCCGGGCCCGCACGAAAACAAAATCTTTTTTGA--------------------------------------------------------------------------------------GAGGC------------------------------------------------------------------------------------------------------------------CCGGCCCGGCCGAACACGAAACTTTTTC-GCAAGGCCCGGGCCC------------------------GGCCCGGCC-CGACACGAAACT---TATTTA---------------CACATATTAC---------G------------AAAT--------------TTAAAAGACATGT-------TA-----------TTTATGTATACATATTTAT--AA--GTT--------CATATTTASizeHit CountTotal NormTotal
No Reads
droTak1
GAG--------------AC---TAGAGATGGGCGCGTGTCAACATTT-----------------------------------------------------------------CTCAACACGACACAGCACGAACACGAA---------------------------------------------------------------------------------------------------------------------------------------------ACTCGAGTTGCCAGCAAGCACGAACACGAAACAAT--------------------TAAATAATTTTAAAACACGACACGACACGAACACG-CACGAAAT----------------------------------AAAAATATATATTTTATAAATTT---TTT-------T-------ATTTTAATATAG----ATT-----------TTTTTTGGTTATTA--AACA-GT--TGG--------AT-ATTTTSizeHit CountTotal NormTotal
No Reads
droEug1
GTT--------------TT-----------------------------TGGATTCAGATCCGAGGTCAGTCAAGGCCACCATCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCATTACGTCG-------------------ATGACCATG---------------TGGACTTTTTC------------------------GAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCSizeHit CountTotal NormTotal
No Reads
dm3
GTT--------------TC-----------------------------TGGATTCGGATCCGAGAGCTGTCAAGGCTATCACCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................ATTCGGATCCGAGAGCTGTCAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TTCGGATCCGAGAGCTGTCAAGGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTA--------------TC-----------------------------GGGATTCGGATCCGAGAGCGGTCAAGGCCATCACCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................TTCGGATCCGAGAGCGGTCAAGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................26288.00176007100648421250217000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................27226.00520004005150101917000
................................................GGGATTCGGATCCGAGAGCGGTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26320.33610000002061502522000
................................................GGGATTCGGATCCGAGAGCGGTCAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27319.00570000003032203413000
................................................GGGATTCGGATCCGAGAGCGGTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25318.335500000010401102712000
....................................................TTCGGATCCGAGAGCGGTCAAGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25211.502300310040405060000
.................TC-----------------------------GGGATTCGGATCCGAGAGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2439.0027000000511030143000
................................................GGGATTCGGATCCGAGAGCGGTCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2639.0027000000005010174000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2828.501700000011412071000
................................................GGGATTCGGATCCGAGAGCGGTCAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2838.0024000000800010123000
....................................................TTCGGATCCGAGAGCGGTCAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2437.672300230020007081000
.................TC-----------------------------GGGATTCGGATCCGAGAGCGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2536.6720000000513000110000
................................................GGGATTCGGATCCGAGAGCGGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2435.6717000000000020105000
................................................GGGATTCGGATCCGAGAGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2235.671700000010005074000
................................................GGGATTCGGATCCGAGAGCGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2334.3313000000000000121000
..................C-----------------------------GGGATTCGGATCCGAGAGCGGTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2634.3313000000000020110000
................................................GGGATTCGGATCCGAGAGCGGTCAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2734.3313000000000010111000
................................................GGGATTCGGATCCGAGAGCGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2334.001200000010002054000
.................TC-----------------------------GGGATTCGGATCCGAGAGCGGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2633.671100000000001091000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2723.50700000000000070000
....................................................TTCGGATCCGAGAGCGGTCAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2333.00900000010012032000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCATCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2923.00600000000000033000
.................TC-----------------------------GGGATTCGGATCCGAGAGCGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2533.00900000000000090000
.TA--------------TC-----------------------------GGGATTCGGATCCGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2382.5020000000000020000000
..................................................GATTCGGATCCGAGAGCGGTCAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2632.33700110000013010000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2822.00400000000000040000
.....................................................TCGGATCCGAGAGCGGTCAAGGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2622.00400010000000021000
......................................................CGGATCCGAGAGCGGTCAAGGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2522.00400000000003001000
.....................................................TCGGATCCGAGAGCGGTCAAGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2522.00400000010000021000
.TA--------------TC-----------------------------GGGATTCGGATCCGAGAGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2631.67500000000101030000
..................C-----------------------------GGGATTCGGATCCGAGAGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2331.67500010010003000000
....................................................TTCGGATCCGAGAGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1831.67500000010004000000
................................................GGGATTCGGATCCGAGAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2031.67500003000002000000
................................................GGGATTCGGATCCGAGAGCGGTCAAGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................3021.50300000010000011000
..A--------------TC-----------------------------GGGATTCGGATCCGAGAGCGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2631.33400000020002000000
..................C-----------------------------GGGATTCGGATCCGAGAGCGGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2531.33400000000001030000
.................TC-----------------------------GGGATTCGGATCCGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19101.2012000000000012000000
.....................................................TCGGATCCGAGAGCGGTCAAGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.00200000010000010000
.......................................................GGATCCGAGAGCGGTCAAGGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2421.00200000000000002000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCATCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................3021.00200000000000020000
.TA--------------TC-----------------------------GGGATTCGGATCCGAGAGCGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2731.00300000000002010000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2821.00200000000000020000
..................................................GATTCGGATCCGAGAGCGGTCAAGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2821.00200000000011000000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2821.00200000010000010000
.................TC-----------------------------GGGATTCGGATCCGAGAGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.67200000010000010000
..................C-----------------------------GGGATTCGGATCCGAGAGCGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.67200000000000020000
.................TC-----------------------------GGGATTCGGATCCGAGAGCGGTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.67200000000001010000
.................................................GGATTCGGATCCGAGAGCGGTCAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.67200110000000000000
GTA--------------TC-----------------------------GGGATTCGGATCCGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.67200000000002000000
.....................................................TCGGATCCGAGAGCGGTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.67200000000000020000
................................................GGGATTCGGATCCGAGAGCGGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.67200000000000002000
....................................................TTCGGATCCGAGAGCGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.67200000000002000000
..A--------------TC-----------------------------GGGATTCGGATCCGAGAGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.67200000010000010000
....................................................TTCGGATCCGAGAGCGGTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.67200000000001001000
..................C-----------------------------GGGATTCGGATCCGAGAGCGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.67200000000001010000
................................................GGGATTCGGATCCGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.60600000000006000000
......................................................CGGATCCGAGAGCGGTCAAGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000000001000000
..........................................................TCCGAGAGCGGTCAAGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000000001000000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000000100000000
..........................................................TCCGAGAGCGGTCAAGGCCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000000001000000
...................................................ATTCGGATCCGAGAGCGGTCAAGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000010000000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100100000000000000
......................................................CGGATCCGAGAGCGGTCAAGGCCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000000010000
..........................................................TCCGAGAGCGGTCAAGGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000001000000
............................................................CGAGAGCGGTCAAGGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000000001000000
....................................................TTCGGATCCGAGAGCGGTCAAGGCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100100000000000000
.........................................................ATCCGAGAGCGGTCAAGGCCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100000000001000000
..........................................................TCCGAGAGCGGTCAAGGCCATCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000000000010000
..........................................................TCCGAGAGCGGTCAAGGCCATCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100010000000000000
.........................................................ATCCGAGAGCGGTCAAGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000001000000
............................................................CGAGAGCGGTCAAGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100000000001000000
..................C-----------------------------GGGATTCGGATCCGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.40400000000004000000
................................................GGGATTCGGATCCGAGAGCGGTCAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.33100000000000001000
...................................................ATTCGGATCCGAGAGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33100000000001000000
.................TC-----------------------------GGGATTCGGATCCGAGAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.33100000000000010000
...................................................ATTCGGATCCGAGAGCGGTCAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100000000100000000
.TA--------------TC-----------------------------GGGATTCGGATCCGAGAGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100000000001000000
.TA--------------TC-----------------------------GGGATTCGGATCCGAGAGCGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.33100000000001000000
................................................GGGATTCGGATCCGAGAGCGGTCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100000000000001000
....................................................TTCGGATCCGAGAGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1730.33100000000001000000
.TA--------------TC-----------------------------GGGATTCGGATCCGAGAGCGGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2830.33100000000000010000
..................C-----------------------------GGGATTCGGATCCGAGAGCGGTCAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2930.33100000010000000000
.....................................................TCGGATCCGAGAGCGGTCAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.33100000000001000000
GTA--------------TC-----------------------------GGGATTCGGATCCGAGAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100000000001000000
....................................................TTCGGATCCGAGAGCGGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.33100000000001000000
................................................GGGATTCGGATCCGAGAGCGGTCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.33100000000001000000
..................................................GATTCGGATCCGAGAGCGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.33100000000001000000
....................................................TTCGGATCCGAGAGCGGTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.33100000000001000000
..................C-----------------------------GGGATTCGGATCCGAGAGCGGTCAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2830.33100000000000001000
.................TC-----------------------------GGGATTCGGATCCGAGAGCGGTCAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2930.33100000010000000000
................................................GGGATTCGGATCCGAGAGCGGTCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.33100000000000001000
................................................GGGATTCGGATCCGAGAGCGGTCAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2830.33100000000000010000
....................................................TTCGGATCCGAGAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1630.33100000000001000000
GTA--------------TC-----------------------------GGGATTCGGATCCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.33100000000001000000
...................................................ATTCGGATCCGAGAGCGGTCAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.33100000000001000000
..A--------------TC-----------------------------GGGATTCGGATCCGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.25200000010001000000
.................TC-----------------------------GGGATTCGGATCCGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.20200000000002000000
................................................GGGATTCGGATCCGAGAGCGGTCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.20100000000000010000
................................................GGGATTCGGATCCGAGAGCGGTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.13100000000000001000
................................................GGGATTCGGATCCGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.10100000000001000000
....................................................TTCGGATCCGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15100.10100000001000000000
..................C-----------------------------GGGATTCGGATCCGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.10100000000001000000
................................................GGGATTCGGATCCGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17100.10100000000001000000
..A--------------TC-----------------------------GGGATTCGGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15100.10100000000001000000
..................................................GATTCGGATCCGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17100.10100000000001000000
droSec2
ATT--------------TT-----------------------------TTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT----------------TAAAGTATGTC-----------------GG---TTTTCT-------T-------ATAATTATATTT----CTT-----------ATATTTTGTACACAAAGCT--AG--TTG--------AT-TCCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTA--------------GC-----------------------------TATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAGAAATTGC---------AATTCATAG----------TTTTTTATAAATTTG------A-----GCTATTG-----------TTTTTCTAGACTCCAATAT--AG--CTA--------TAT-CTTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGACTCCAATAT--AG--CTA--------TAT-CT..26140.29404000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAATTGC---------AATTCATAG----------TTTTTTA..................................................................................2660.17101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAATTGC---------AATTCATAG----------TTTTTT...................................................................................25200.10202000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAGACTCCAATAT--AG--CTA--------TAT-C...25140.07100000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGACTCCAATAT--AG--CTA--------TAT-CT..25150.07101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGACTCCAATAT--AG--CTA--------TAT-C...24150.07101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTAGACTCCAATAT--AG--CT.................22160.06100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACTCCAATAT--AG--CTA--------TAT-CTT.24160.06101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG------A-----GCTATTG-----------TTTTTCTAGACT................................24160.06101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATAAATTTG------A-----GCTATTG-----------TT..........................................24200.05100100000000
droEre2
GTT--------------TC-----------------------------GGGATTCGGATCCGAGAGCAGT--AGGCCATCACCGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
ATT--------------GG--------------------------------TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---------------TTCTGGACATGTGGATGTATATTTTTTATAAATAT---TT--------------AA------A-----CATAT------------------------------TT--TA--ATA--------CGT--ATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GTT--------------TC-----------------------------GACATTCGGATCCAAGAGCAGTCAAGGCCATCAACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................CATTCGGATCCAAGAGCAGTCAAGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.201010000
..........................................................TCCAAGAGCAGTCAAGGCCATCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2370.141010000
..........................................................TCCAAGAGCAGTCAAGGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141010000
droWil2
TA----------------------GAGATGGGCATGGACTGCAATTT-----------------------------------------------------------------TTCGGTCCAGTCCAACACGGTCCAAAA---------------------------------------------------------------------------------------------------------------------------------------------TTGAAAATTCCAAACACGCACG-----------------------------C--TCCAAAATTTTGGAAACACGACCC-----------AACACGAAATT---TTT---------------TACTTGATTTTTGTTTTTACTTTTTTTTCATATTT---TA--------------TT------A-----AGTTT----CCACG------TTTTTG--CGTT--CAATTTTCAATATGTCTAACAAT-CATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--CGTT--CAATTTTCAATATGTC............2311.00101000
........................................................................................................................................................................................................................................................................................................................................................TGGAAACACGACCC-----------AACACGAAATT---T...................................................................................................................................................2611.00101000
........................................................................................................................................................................................................................................................................................................................................................TGGAAACACGACCC-----------AACACGAAA.........................................................................................................................................................2311.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CAATTTTCAATATGTCTAACAAT-CAT.2711.00101000
...............................................................................................................................................................................................................................................................................................................................................................ACGACCC-----------AACACGAAATT---T...................................................................................................................................................1911.00101000
...........................................................................................................................................................................................................................................................................................................................................................AAACACGACCC-----------AACACGAAATT---TTT---------------..................................................................................................................................2511.00101000
.............................................................................................................................................................................................................................................................................................AATTCCAAACACGCACG-----------------------------C--TCCAAAATTT...........................................................................................................................................................................................2811.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--CGTT--CAATTTTCAATATGTCTAACAA......2811.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................TACTTGATTTTTGTTTTTACTTTTT.........................................................................................................2531.00301020
............................TGGGCATGGACTGCAATTT-----------------------------------------------------------------TTCGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................2661.00601050
TA----------------------GAGATGGGCATGGACTGCAATTT-----------------------------------------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................................................2651.00500050
TA----------------------GAGATGGGCATGGACTGCAATTT-----------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................2550.80400040
.................................................................................................................................................................................................................................................................................................................................................................................AACACGAAATT---TTT---------------TACTTGATTTT.......................................................................................................................2580.63504010
.A----------------------GAGATGGGCATGGACTGCAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.40200020
...........................................................................................................................................................................................................................................................................................................................................................................................T---TTT---------------TACTTGATTTTTGTTTTTACTT............................................................................................................2630.33101000
.................................................................................................................................................................................................................................................................................................................................................................................................T---------------TACTTGATTTTTGTTTTTACTTTTT.........................................................................................................2630.33101000
..............................................................................................................................................................................................................................................................................................................................................TCCAAAATTTTGGAAACACGACCC-----------AAC...............................................................................................................................................................2760.33202000
..............................................................................................................................................................................................................................................................................................................................................TCCAAAATTTTGGAAACACGACCC-----------AACA..............................................................................................................................................................2860.33202000
TA----------------------GAGATGGGCATGGACTGCAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.20100010
TA----------------------GAGATGGGCATGGACTGCAATTT-----------------------------------------------------------------TT.................................................................................................................................................................................................................................................................................................................................................................................................................................2750.20100010
.A----------------------GAGATGGGCATGGACTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.20101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----CCACG------TTTTTG--CGTT--CAATTTTCAATA................2860.17101000
............................................................................................................................................................................................................................................................................................................CG-----------------------------C--TCCAAAATTTTGGAAACACGACCC-----------..................................................................................................................................................................2760.17101000
............................TGGGCATGGACTGCAATTT-----------------------------------------------------------------TTCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2560.17100010
...........................................................................................................................................................................................................................................................................................................................................C--TCCAAAATTTTGGAAACACGAC...............................................................................................................................................................................2360.17100010
.................................................................................................................................................................................................................................................................................................................................................AAAATTTTGGAAACACGACCC-----------AACACG............................................................................................................................................................2760.17101000
.....................................................................................................................................................................................................................................................................................................................................................................C-----------AACACGAAATT---TTT---------------TACTTGATTTTTG.....................................................................................................................2870.14101000
droVir3
GTT--------------TC-----------------------------AGGATTCAGATCCTGGTGCGGTTAAAGCTATTCGTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................GATTCAGATCCTGGTGCGGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501000000000000000000000000000000000000000000000000000000000000010
droMoj3
ATT--------------CATAATAGAGGTGGGCACGGGCCGAATTTT-----------------------------------------------------------------TTGCACTCGGCCCGATCCGCCCACGG--------------------------------------------------------------------------------------------------------------------------------TCAGAAG-------TTCAAAAT-TTTAT-------------------------CATACCCGCCCGCCC------------------------GAAACAATT-AC-AACAAATTT---AATTC---------------TCAAACATTAC---------AATTTTTT-----------TTTCTCAAAAA------TAACAACA----------------------ATTTTATTCTTA--AAAATTACAATA--------TT-ATTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/17/2015 at 10:02 PM