ID:

dan_3413

 Coordinate:

scaffold_9696:11074-11372 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-53.6 -53.5 -53.5

Flybase annnotation

CDS [Dana\GF13926-cds]; exon [dana_GLEANR_14201:1]; exon [dana_GLEANR_14201:2]; CDS [Dana\GF13926-cds]; intron [Dana\GF13926-in]

Repeatable elements

NameClassFamilyStrand
Rehavkus-1_DADNAMULE-NOF-
mature
  1. dan_3413  scaffold_9696:11154-11179 -
  2. scaffold_13043:404186-404211 -
star

Sense Strand Reads

-------###########################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCATAACATGGAAAATCTGGGACATATCCTCATCTGCGACATCTTGATTGGTTACCTTTTTGGTTTTTGAGCCCTTTCCAGTTAGGAAAACAGAAAAAATATGCGATAATATGCATTTCCCAAACCGATCGCTTTTTTCCAAACCGCATAATTATGCAAATGAAACTTTATGGTGTACTGGTTAAATTTAGGTAGAACATACATATTTCGTATGATTTTTTCCTTGTTTTGTTTTAAGTGTGTTCCCAAACTACCGTAACTGTTTCTTTTAATTGTTTCTGGGGCTAATTCGTCTGTCTCCTGGTTTGCCCTTCATCCAAAATACTCGGCTCGGTTGGATTGTTTGTAGATGCGGAGGCTCTGACGATTGTAAAGTACTCATGGCAGCTGAGTCAGCCT
**************************************************...(((.....)))..(((((((.(((((.....)))))...(((((((...(((((....................))))))))))))((((((((((....))))(((.(((((.((((((((((((...((((...(((.(((((((((.......))))).))))..)))...)))).....))))...........))))))))..))))).)))..........(((((..........)))))..))))))...................)))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V106
head
 V039
embryo
 M044
female body
 V105
male body		 V055
head
...................................................................................................................................................................................................................................................TCCCAAACTACCGTAACTGTTTCTTT.................................................................................................................................. 26 0 2 1.00 2 1 0 0 1 0 0
.......................................................................................................................................................................................AAATCTAGGTAGAACCTCCA.................................................................................................................................................................................................... 20 3 10 0.80 8 0 6 0 0 2 0
........................................................................................................................................................................................AATCTAGGTAGAACCTCCA.................................................................................................................................................................................................... 19 3 14 0.64 9 0 9 0 0 0 0
..AAACCATGGAAATTCTGGGACA....................................................................................................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0
............................................TGATTGGTTACCTCTTTGTTTTTTGT......................................................................................................................................................................................................................................................................................................................................... 26 3 2 0.50 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................ATTTTAAGTCTGTTCCCAA...................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0
.......................................................................................................................................................................................AAATCTCGGTAGAACATCCA.................................................................................................................................................................................................... 20 3 12 0.33 4 0 2 0 0 2 0
............................................TGCTTGGTTACCTTGTTGGT............................................................................................................................................................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 1
............AAATCTGGGACATATCCTCATC............................................................................................................................................................................................................................................................................................................................................................................. 22 0 14 0.29 4 2 0 0 2 0 0
........................TATCCTCATCTGAGACATCTTGATTGG............................................................................................................................................................................................................................................................................................................................................................ 27 1 9 0.22 2 1 0 0 1 0 0
.......................................................................................................................................................................................AAATTTCGGTAGAACCTCCA.................................................................................................................................................................................................... 20 3 14 0.21 3 0 1 0 1 1 0
........................................................................................................................................................................................AATCTCGGTAGAACATCCA.................................................................................................................................................................................................... 19 3 19 0.21 4 0 3 0 0 1 0
.......................................................................................................................................................................................................................................TTTTAAGTCTGTTCCCGA...................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0
.....................................................................................................................................................................................TCAAATCTAGGTAGAACCTACA.................................................................................................................................................................................................... 22 3 5 0.20 1 0 1 0 0 0 0
.......................................................................................................................................................................................AAATCTAGGTGGAACCTACA.................................................................................................................................................................................................... 20 3 11 0.18 2 0 2 0 0 0 0
...................................................................................................................................................................................GGTTAAATCTCGGTAGAAC......................................................................................................................................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0
................CTGGGACATATCCTCATCTGAGAC....................................................................................................................................................................................................................................................................................................................................................................... 24 1 12 0.17 2 2 0 0 0 0 0
.......................................................................................................................................................................................................................................TTTTAAGTCTGTTCCCAC...................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TCGGCTCGGTTGGATTGTTGGCAC.................................................. 24 3 8 0.13 1 1 0 0 0 0 0
...........................CCTCATCTGAGACATCTTGATTGG............................................................................................................................................................................................................................................................................................................................................................ 24 1 9 0.11 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................................AGTTTTAAGTCTGTTCCC........................................................................................................................................................ 18 2 9 0.11 1 1 0 0 0 0 0
..........GAAAATCTGGGACATATCCTCATC............................................................................................................................................................................................................................................................................................................................................................................. 24 0 10 0.10 1 1 0 0 0 0 0
....................................................................TAGCCCTTGCCAGTTAGG......................................................................................................................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 1
........................TATCCTCATCTGAGACATCTTG................................................................................................................................................................................................................................................................................................................................................................. 22 1 11 0.09 1 0 0 0 1 0 0
..................................................................................................................ATTTCCTAAACCGAGCGCG.......................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 1 0 0 0
................CTGGGACATATCCTCATCTGAGACAT..................................................................................................................................................................................................................................................................................................................................................................... 26 1 12 0.08 1 0 0 0 1 0 0
................CTGGGACATATCCTCATCTGAGACATA.................................................................................................................................................................................................................................................................................................................................................................... 27 2 12 0.08 1 1 0 0 0 0 0
...............TCTGGGACATATCCTCATCTGAGACAT..................................................................................................................................................................................................................................................................................................................................................................... 27 1 12 0.08 1 1 0 0 0 0 0
...............TCTGGGACATATCCTCATCTGAGACATCT................................................................................................................................................................................................................................................................................................................................................................... 29 1 12 0.08 1 1 0 0 0 0 0
............AAATCTGGGACATATCCTCATCT............................................................................................................................................................................................................................................................................................................................................................................ 23 0 13 0.08 1 0 0 0 1 0 0
............AAATCTGGGACATATCCTCATCTGAGA........................................................................................................................................................................................................................................................................................................................................................................ 27 1 13 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................................................AAATATCGGTAGAACCTACA.................................................................................................................................................................................................... 20 3 13 0.08 1 0 1 0 0 0 0
..................GGGACATATCCTCATCTGAGACATC.................................................................................................................................................................................................................................................................................................................................................................... 25 1 15 0.07 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................TTTTAAGTCTGTTCACAA...................................................................................................................................................... 18 2 16 0.06 1 0 0 1 0 0 0
................CTGGGACATATCCTCATCTGAGAA....................................................................................................................................................................................................................................................................................................................................................................... 24 2 17 0.06 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................TTTTAAGTGTGTTCGAAAA..................................................................................................................................................... 19 2 17 0.06 1 0 0 1 0 0 0
..............................................................................................................................................................................GTACGGGTTAAACTTAGA............................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................................AAATTTAGGTGGAACCTCCA.................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0
................................................................................................................TCACTTCCCAAATCGATCGC........................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TAATTCTTTCTGGGGCTTGT.............................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 1
...............................................................................AGTTAGGAAAAAAGAGAAA............................................................................................................................................................................................................................................................................................................. 19 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

CGTATTGTACCTTTTAGACCCTGTATAGGAGTAGACGCTGTAGAACTAACCAATGGAAAAACCAAAAACTCGGGAAAGGTCAATCCTTTTGTCTTTTTTATACGCTATTATACGTAAAGGGTTTGGCTAGCGAAAAAAGGTTTGGCGTATTAATACGTTTACTTTGAAATACCACATGACCAATTTAAATCCATCTTGTATGTATAAAGCATACTAAAAAAGGAACAAAACAAAATTCACACAAGGGTTTGATGGCATTGACAAAGAAAATTAACAAAGACCCCGATTAAGCAGACAGAGGACCAAACGGGAAGTAGGTTTTATGAGCCGAGCCAACCTAACAAACATCTACGCCTCCGAGACTGCTAACATTTCATGAGTACCGTCGACTCAGTCGGA
**************************************************...(((.....)))..(((((((.(((((.....)))))...(((((((...(((((....................))))))))))))((((((((((....))))(((.(((((.((((((((((((...((((...(((.(((((((((.......))))).))))..)))...)))).....))))...........))))))))..))))).)))..........(((((..........)))))..))))))...................)))))))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V039
embryo
 V105
male body		 V106
head
 V055
head
..........................AGGAGTAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 28 1 9 6.00 54 44 7 3 0 0 0
............................GAGTAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 26 1 9 1.11 10 9 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................AGAACCAAACGGGAAGAAG.................................................................................. 19 2 14 1.00 14 1 3 0 10 0 0
.........................TAGGAGTAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 29 1 9 0.89 8 8 0 0 0 0 0
...............................TAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 23 1 12 0.83 10 8 1 1 0 0 0
...........................GGAGTAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 27 1 9 0.56 5 2 1 2 0 0 0
.............................AGTAGACGCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 1 0
..............................GTAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 24 1 12 0.50 6 4 2 0 0 0 0
............TTTAGACCCTGTATAGGAGTAGACGC......................................................................................................................................................................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0
...........................GGACTAGACGCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 27 1 2 0.50 1 0 0 0 1 0 0
..........................TTGAGTAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 28 3 11 0.45 5 3 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................AGAACCAAACGGGAAGAAGC................................................................................. 20 3 20 0.45 9 1 1 0 7 0 0
...........................TGAGTAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 27 2 9 0.44 4 4 0 0 0 0 0
.............................AGTAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 25 1 11 0.36 4 2 1 1 0 0 0
..........................AGGAGTAGACTCTGTAGAACTAACCAA.......................................................................................................................................................................................................................................................................................................................................................... 27 1 9 0.33 3 2 0 1 0 0 0
....................................................................................................................................................................................................................................................................CCAAAGAAAACTAACAAAGA....................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0
................................AGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 22 1 18 0.28 5 5 0 0 0 0 0
............................................................................AGGTCACTACTTTTGTCTT................................................................................................................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 1
............................GAGTAGACTCTGTAGAACTAACCAGT......................................................................................................................................................................................................................................................................................................................................................... 26 2 9 0.22 2 2 0 0 0 0 0
..........................AGGAGTAGACTCTGTAGAACTAACTAAT......................................................................................................................................................................................................................................................................................................................................................... 28 2 9 0.22 2 2 0 0 0 0 0
..........................AGGAGTATACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 28 2 9 0.22 2 1 0 1 0 0 0
...........................GGAGTATACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 27 2 9 0.22 2 0 0 2 0 0 0
......................................................................................................................................................................................................................................................................................................ACAGAGGACCAAACGGGAAGTAGGTT............................................................................... 26 0 5 0.20 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................AGAGGAGCAAACGGGAAG..................................................................................... 18 1 5 0.20 1 1 0 0 0 0 0
................................................................................................................................................................................................................CCATACAAGAAAAGGAACAAAA......................................................................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0
...............................CAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 23 2 18 0.17 3 3 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................AGGACCACACGGGAAGGAG.................................................................................. 19 2 6 0.17 1 0 1 0 0 0 0
...............................TAGACTCTGTAGAACTAACCAATG........................................................................................................................................................................................................................................................................................................................................................ 24 1 12 0.17 2 2 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ATGGGAAGTAGGTTTTAA........................................................................... 18 2 7 0.14 1 0 0 0 0 0 1
............................GAGTAGACTCTGTAGAACTAACTAAT......................................................................................................................................................................................................................................................................................................................................................... 26 2 9 0.11 1 1 0 0 0 0 0
.........................TAAGAGTAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 29 2 9 0.11 1 0 0 0 0 1 0
..........................AGGAGTAGACTCTGTAGGACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 28 2 9 0.11 1 0 0 1 0 0 0
...........................TGAGTAGACTCTGTAGAACTAACCAA.......................................................................................................................................................................................................................................................................................................................................................... 26 2 9 0.11 1 1 0 0 0 0 0
............................GAGTAGACTCTGTAGAACTAACCAAC......................................................................................................................................................................................................................................................................................................................................................... 26 2 9 0.11 1 0 1 0 0 0 0
..........................AGGAGTAGACTCTGTAGAACTAACCAAGG........................................................................................................................................................................................................................................................................................................................................................ 29 2 9 0.11 1 1 0 0 0 0 0
.................................GACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 21 1 18 0.11 2 1 1 0 0 0 0
..........................AGGAGTTGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 28 2 9 0.11 1 0 0 1 0 0 0
...............................................CCCCAATGGAAAAACTAAAAAC.......................................................................................................................................................................................................................................................................................................................................... 22 3 9 0.11 1 1 0 0 0 0 0
.........................TAAGAGTAGACTCTGTAGAACTAACTAAT......................................................................................................................................................................................................................................................................................................................................................... 29 3 9 0.11 1 1 0 0 0 0 0
..........................AGGAGTAGACTCTGTAGAACTAACCAGT......................................................................................................................................................................................................................................................................................................................................................... 28 2 9 0.11 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GAGCCGAGCCAACCTAACAAACA.................................................... 23 0 20 0.10 2 0 2 0 0 0 0
.....................TGTATAGGAGTAGACTCTGTAGAACT................................................................................................................................................................................................................................................................................................................................................................ 26 1 10 0.10 1 0 0 1 0 0 0
.........................TTAGAGTAGACTCTGTAGAACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 29 3 11 0.09 1 1 0 0 0 0 0
.............................AGTAGACTCTGTAGAACTAACTAAT......................................................................................................................................................................................................................................................................................................................................................... 25 2 11 0.09 1 1 0 0 0 0 0
...............................TAGACTCTGTAGAACTAACCAAGG........................................................................................................................................................................................................................................................................................................................................................ 24 2 12 0.08 1 1 0 0 0 0 0
..............................GTAGACTCTGTAGAACTAACCAATG........................................................................................................................................................................................................................................................................................................................................................ 25 1 12 0.08 1 0 1 0 0 0 0
...............AGACCCTGTATAGGAGTAGACTCTGTAG.................................................................................................................................................................................................................................................................................................................................................................... 28 1 12 0.08 1 0 1 0 0 0 0
..............TAGACCCTGTATAGGAGTAGACTCTGT...................................................................................................................................................................................................................................................................................................................................................................... 27 1 12 0.08 1 1 0 0 0 0 0
.................ACCCTGTATAGGAGTAGACTC......................................................................................................................................................................................................................................................................................................................................................................... 21 1 13 0.08 1 0 0 1 0 0 0
...................................................................................................................................GAAAAAAGGTTCGGCGTATTAAT..................................................................................................................................................................................................................................................... 23 1 14 0.07 1 0 1 0 0 0 0
..........................AGGAGTAGACTCTGTAGAAGTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 28 2 16 0.06 1 0 1 0 0 0 0
........................................................................................................................................................................................................................AAAAAGGAACAAAACAAAAA................................................................................................................................................................... 20 1 16 0.06 1 0 0 1 0 0 0
.....................................................................CCGGGAACGGTCAATCTTTT...................................................................................................................................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 1 0 0 0
................................AGACTCTGTAGAACTAACCAATG........................................................................................................................................................................................................................................................................................................................................................ 23 1 18 0.06 1 1 0 0 0 0 0
.................................GACTCTGTAGAACGAACCAATG........................................................................................................................................................................................................................................................................................................................................................ 22 2 18 0.06 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................AAAAAAGGAACAAAAGAAA..................................................................................................................................................................... 19 1 18 0.06 1 1 0 0 0 0 0
................................AGACTCTGTAGAACTAACCAAC......................................................................................................................................................................................................................................................................................................................................................... 22 2 18 0.06 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................AAAAGGAACGAAACAAAA.................................................................................................................................................................... 18 1 18 0.06 1 1 0 0 0 0 0
...............................CAGACTCTGTAGCACTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 23 3 18 0.06 1 1 0 0 0 0 0
.............................ATTAGACTCTGTAGAAGTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 25 3 19 0.05 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................AAAACAAAGTCCACACAA........................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................AAAAAAGGAACAAAAAAAAACT.................................................................................................................................................................. 22 2 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................ATAAGAGGAACAAAACAAA..................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................CCATCGACAAAGAAAATTAA............................................................................................................................. 20 2 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................GAAAAACGGTTTGGCGCAATAATACGT................................................................................................................................................................................................................................................. 27 3 20 0.05 1 0 0 0 1 0 0
................................................................................................................................................................ACTTTGAAGTACCACATGACCAA........................................................................................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0
................................AGACTCTGTAGAAGTAACCAAT......................................................................................................................................................................................................................................................................................................................................................... 22 2 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_9696:11024-11422 - dan_3413 GCATAA--CATGGAAAAT-CTGGGACATATCCTCATCTGCGACATCTTGATTGGTTACCTTTTTGGTTTTTGAGCCCTTTCCAGTTAGGAAAACAGAAAA----------------AATATGCGATAATATGCATTTCCCAAACCGATCGCTTTTTTCCAAACCGCATAATTATGCAAATGAAACTTTATGGTGTACTGGTTAAATTTAGGT-----------------------------------AGAACATACATATTTCGTATGATTTTTTCCTTGTTTTGTTTTAAGTGTGTTCCCAAACTACCGTAACTGTTTCTTTTAATTGTTTCTGGGGCTAATTCGTCTGTCTCCTGGTTTGCCCTTC-ATCCAAAATACTCGGCTCGGTTGGATTGTTTG--TAGATGCG---GAGGCTCTGACG-ATTGTAAAGT-ACTCATGGCAGCTGAGTCAGCCT
droBip1 scf7180000395143:39160-39273 - TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACAAATTCATATATCTCCCGGGTTACCTTTCAATCCAAAAAACTCTGG-TGATTGGTT----TCTGTGGAGGCG---GAGGCCTTTTCACAGGGAAAAGTTTCTTATAGTTGCTGAGT------
droKik1 scf7180000302281:67364-67412 + ATAA--------------------------TTTTA---------------------------------------------------------------------------------------------------------------------------------------------ACATTAAGCTTTATGATGTAGTAGTTCGATTTAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGA------
droFic1 scf7180000451427:630-741 - TTTC--------------------------TTTG--------------------------------------AGCTTCTT---------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGGGTCAAATAAAACTCACTCCTGGTCTTCCTTTG-CTGCAAAAAACCCGTCTAGGATGGGTCGTCGC--AGGAGGTGGCTCAGAACACCGTG-AA--------------------------------
droEle1 scf7180000490214:107205-107397 + GCTTATATCATG---AAGCT-TTGGCGAATT---------------TTGGTT--------------------AACTAATTTTTCTCGGTAAAACAGCAAG----------------GGTAT--AATAACTTTAGCCTGCCGAACTAAGCTT---TC--------------------------------TTTATGCGGTTATTATTCTTAAATAATATTTTTTTGGGAAATACATACAGCTCAAATTA-----------------------------------------------------------------------------------AAACAGAGCACACAAAATTTGCAGCGGCGTTTTTCCTG---------------------------------------------------------------------------------------------
droRho1 scf7180000779280:14215-14334 - TTAC--------------------------TTTTAAAAGATCT---CCTTATTGGCGCAACCATGTTTTTAGAGCTATTA---------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAAGGGCAGATTAAGTTTGCTGCTGGGTTACCCTTA-TTGCAGAAAACAAGGCTTGGTTGGATCGTT--------------------------------------------------------------
droBia1 scf7180000302334:937458-937566 + TCTGAA--C-TGGATAAT---------------------------------------------------------------------------CAGTAAATAAATTCAAGTGCAATGCGTG--GACAGTTTTATATTGATTTAATA-------------------------------------------------------------------------------------------------------------CATGTTCCATATGAGCTTTATATTTTTTAATTTTATGTGTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415823:9461-9551 - ATTA--------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTAGGGCAGATTAAGTTGGCTGCTGAGTTACCCCTA-TTGCAGAGAACGAGGCTTGGTTGGATAGTTAC--AGGAGGTGG---ATATTCT---------------------------------------
droSec2 scaffold_88:13836-13912 + TGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGGACTGCCCCTG-CTTCAAAATACTCGTCTGGGCTGGGTCGTGTC--TGGAGACTGCGCGCGCCCTTGCG-GT--------------------------------
droWil2 scf2_1100000004512:1623339-1623448 - ATTT--------------------------CCACATTCGCTCTGTCTCACTTTTATTTGTCTTTGTTTTTATAGCCTTTTTCTGCCAGGTAAACAGACAATGCAACCAAAAGGAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTCTTGTT-T-----------------------AAAC------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GCATAA--CATGGAAAAT-CTGGGACATATCCTCATCTGCGACATCTTGATTGGTTACCTTTTTGGTTTTTGAGCCCTTTCCAGTTAGGAAAACAGAAAA----------------AATATGCGATAATATGCATTTCCCAAACCGATCGCTTTTTTCCAAACCGCATAATTATGCAAATGAAACTTTATGGTGTACTGGTTAAATTTAGGT-----------------------------------AGAACATACATATTTCGTATGATTTTTTCCTTGTTTTGTTTTAAGTGTGTTCCCAAACTACCGTAACTGTTTCTTTTAATTGTTTCTGGGGCTAATTCGTCTGTCTCCTGGTTTGCCCTTC-ATCCAAAATACTCGGCTCGGTTGGATTGTTTG--TAGATGCG---GAGGCTCTGACG-ATTGTAAAGT-ACTCATGGCAGCTGAGTCAGCCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................TCCCAAACTACCGTAACTGTTTCTTT..........................................................................................................................................2621.002110000
..............AAAT-CTGGGACATATCCTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................22140.294220000
............GAAAAT-CTGGGACATATCCTCATC........................................................................................................................................................................................................................................................................................................................................................................................................................................24100.101010000
..............AAAT-CTGGGACATATCCTCATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................23130.081100000
droBip1
TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACAAATTCATATATCTCCCGGGTTACCTTTCAATCCAAAAAACTCTGG-TGATTGGTT----TCTGTGGAGGCG---GAGGCCTTTTCACAGGGAAAAGTTTCTTATAGTTGCTGAGT------SizeHit CountTotal NormTotal
No Reads
droKik1
ATAA--------------------------TTTTA---------------------------------------------------------------------------------------------------------------------------------------------ACATTAAGCTTTATGATGTAGTAGTTCGATTTAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGA------SizeHit CountTotal NormTotal
No Reads
droFic1
TTTC--------------------------TTTG--------------------------------------AGCTTCTT---------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGGGTCAAATAAAACTCACTCCTGGTCTTCCTTTG-CTGCAAAAAACCCGTCTAGGATGGGTCGTCGC--AGGAGGTGGCTCAGAACACCGTG-AA--------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCTTATATCATG---AAGCT-TTGGCGAATT---------------TTGGTT--------------------AACTAATTTTTCTCGGTAAAACAGCAAG----------------GGTAT--AATAACTTTAGCCTGCCGAACTAAGCTT---TC--------------------------------TTTATGCGGTTATTATTCTTAAATAATATTTTTTTGGGAAATACATACAGCTCAAATTA-----------------------------------------------------------------------------------AAACAGAGCACACAAAATTTGCAGCGGCGTTTTTCCTG---------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTAC--------------------------TTTTAAAAGATCT---CCTTATTGGCGCAACCATGTTTTTAGAGCTATTA---------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAAGGGCAGATTAAGTTTGCTGCTGGGTTACCCTTA-TTGCAGAAAACAAGGCTTGGTTGGATCGTT--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCTGAA--C-TGGATAAT---------------------------------------------------------------------------CAGTAAATAAATTCAAGTGCAATGCGTG--GACAGTTTTATATTGATTTAATA-------------------------------------------------------------------------------------------------------------CATGTTCCATATGAGCTTTATATTTTTTAATTTTATGTGTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATTA--------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTAGGGCAGATTAAGTTGGCTGCTGAGTTACCCCTA-TTGCAGAGAACGAGGCTTGGTTGGATAGTTAC--AGGAGGTGG---ATATTCT---------------------------------------SizeHit CountTotal NormTotal
No Reads
droSec2
TGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGGACTGCCCCTG-CTTCAAAATACTCGTCTGGGCTGGGTCGTGTC--TGGAGACTGCGCGCGCCCTTGCG-GT--------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................TG-CTTCAAAATACTCGTCTGGGCTGG....................................................................2611.0010010
..............................................................................................................................................................................................................................................................................................................................................................................TG-CTTCAAAATACTCGTCTGGGCTGGGT..................................................................2811.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGACTGCGCGCGCCCTTGCG-GT--------------------------------2511.0011000
............................................................................................................................................................................................................................................................................................................................................................................................TCGTCTGGGCTGGGTCGTGTC--TGGA......................................................25200.0510001
..........................................................................................................................................................................................................................................................................................................................................................................................ACTCGTCTGGGCTGGGTCGTGTC--..........................................................23200.0511000
............................................................................................................................................................................................................................................................................................................................................................................................TCGTCTGGGCTGGGTCGTGTC--TGGAG.....................................................26200.0511000
............................................................................................................................................................................................................................................................................................................................................................................................TCGTCTGGGCTGGGTCGTGTC--TGG.......................................................24200.0510100
droWil2
ATTT--------------------------CCACATTCGCTCTGTCTCACTTTTATTTGTCTTTGTTTTTATAGCCTTTTTCTGCCAGGTAAACAGACAATGCAACCAAAAGGAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTCTTGTT-T-----------------------AAAC------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/18/2015 at 07:33 AM