ID:

dan_3408

 Coordinate:

scaffold_965:1698-1848 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.2 -13.2 -12.9 -12.7

Flybase annnotation

exon [dana_GLEANR_20414:1]; CDS [Dana\GF18983-cds]; intron [Dana\GF18983-in]

Repeatable elements

NameClassFamilyStrand
Hoana7DNAhAT-Ac-
mature
  1. dan_3408  scaffold_965:1807-1831 +
  2. scaffold_12905:435661-435685 +
  3. scaffold_12948:132424-132448 +
star
  1. dan_3408  scaffold_965:1722-1749 +
  2. scaffold_12943:969562-969589 -
  3. scaffold_13417:2719126-2719153 -
  4. scaffold_13417:2719441-2719468 +

Sense Strand Reads

-------###########################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTGAAAAATGACTGGTCGTGGTAAAGGTGTAGAGCTGGAAAAACATCGATGTTGGCCACAATCGATGTTGTCGATGTTTTGGGATGAAAACATCGATTATAATCGATTATCGAAAAAAAAAAACGAATATTTTTTGTCGTTTAAATTTAACTTATTTAATTGAGATCATAAAGGAAGCTGTTTTTGTTCAAAAATAACAACATGTTAACAATTTTTGGTTTAAGAGAGCTCCTGCGCTCACTAATGACTTG
**************************************************************************...........((.((((((..((((..(((((((...........(((((.(((.....))))))))..............)))))))....))))..))...))))))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V055
head
 V039
embryo
 V105
male body		 V106
head
.............................TAGAGCTGGAAAAACATCGATGTTGG.................................................................................................................................................................................................... 26 0 11 2.09 23 6 14 0 1 2 0
...............................................................................................................................................................TTGAGATCATAAAGGAAGCTGTTTT................................................................... 25 0 3 1.67 5 4 1 0 0 0 0
.........GACTGGTCGTGGTAAAGGTGTAGAG......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................TTGAGATCATAAAGGAAGCTGTTTTT.................................................................. 26 0 3 1.00 3 3 0 0 0 0 0
.......GTGGCTGTTCGTGGTAAAGGTGTA............................................................................................................................................................................................................................ 24 3 1 1.00 1 0 0 1 0 0 0
........................AGGTGTAGAGCTGGAAAAAA............................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0
............TGGTCGTGGTAAAGGTGTAGA.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................TTGAGATCATAAAGGAAGCTGTTT.................................................................... 24 0 3 1.00 3 1 2 0 0 0 0
...............................................................................................................................................................TTGAGATCATAAAGGAAGCTGTTC.................................................................... 24 1 3 0.67 2 2 0 0 0 0 0
.................................................................................................................................................................GAGATCATAAAGGAAGCTGTTTTTG................................................................. 25 0 3 0.67 2 0 2 0 0 0 0
................................................................................................................................................................TGAGATCATAAAGGAAGCTGTTTTT.................................................................. 25 0 3 0.67 2 1 1 0 0 0 0
................................................................................................................................................................TGAGATCATAAAGGAAGCTGTTTT................................................................... 24 0 3 0.67 2 2 0 0 0 0 0
...............................................................................................................................................................TGGAGATCATAAAGGAAGCTGTTTT................................................................... 25 1 3 0.67 2 2 0 0 0 0 0
................................................................................................................................................................TGAGATCATAAAGGAAGCTGTTTTTG................................................................. 26 0 3 0.67 2 1 1 0 0 0 0
...................................................................................................TAATCGATTACAGAAAAAAAAAA................................................................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................................................................................TAAGAGAGCTCCTGCGCTCACTAATGACT.. 29 0 5 0.40 2 0 2 0 0 0 0
.........................................................................................................................................................................................................................GTTTAAGAGTGCACCTGC................ 18 2 12 0.33 4 1 0 2 0 0 1
................................................................................................................................................................TGAGATCATATACGAAGCTGTTT.................................................................... 23 2 3 0.33 1 0 0 1 0 0 0
...............................................................................................................................................................TTGAGATCATAAAGGAAGCTGT...................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
...........................................................................................................................................................TTAATTGAGATCATAAAGGAAGCTGT...................................................................... 26 0 3 0.33 1 1 0 0 0 0 0
.............................................................................................................................................................AATTGAGATCATAAAGGAAGCTGTT..................................................................... 25 0 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................GTGAGATCATAAAGGAAGCTGTTTTT.................................................................. 26 1 3 0.33 1 0 1 0 0 0 0
........................................AAACATCGATGTTGGCCACAATCG........................................................................................................................................................................................... 24 0 9 0.33 3 0 0 0 0 2 1
...............................................................................................................................................................TTGTGATCATAAAGGAAGCTGTTTTT.................................................................. 26 1 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................TTGAGATCATAAAGGAAGCTTTTTTT.................................................................. 26 1 3 0.33 1 1 0 0 0 0 0
................................................................................................................................................................TGAGATCATAAAGGAAGCTGTTTTTGT................................................................ 27 0 3 0.33 1 1 0 0 0 0 0
..............................................................................................................................................................ATTGAGATCATAAAGGAAGCTGTTTT................................................................... 26 0 3 0.33 1 0 1 0 0 0 0
................................................................................................................................................................TCAGAACATACAGGAAGCTGTTT.................................................................... 23 3 3 0.33 1 0 0 1 0 0 0
...............................................................................................................................................................TTGTGATCATAAAGGAAGCTGTTTTTG................................................................. 27 1 3 0.33 1 1 0 0 0 0 0
.............................................................................................................................................................AATTGAGATCATAAAGGAAGCTGTTTT................................................................... 27 0 3 0.33 1 1 0 0 0 0 0
...................................................................................................................................................................GATCATAAAGGAAGCTGTTTTTG................................................................. 23 0 3 0.33 1 0 1 0 0 0 0
..............................................................................................................................................................TTTGAGATCATAAAGGAAGCTGTTTT................................................................... 26 1 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................TGGAGATCATAAAGGAAGCTGTTTTT.................................................................. 26 1 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................TGGAGATCATAAAGGAAGCTGTTT.................................................................... 24 1 3 0.33 1 1 0 0 0 0 0
............................GTAGAGCTGGAAAAACATCGATGTT...................................................................................................................................................................................................... 25 0 6 0.33 2 1 1 0 0 0 0
..................................................................................GATGAAGACATAGATTATA...................................................................................................................................................... 19 2 6 0.33 2 0 0 0 1 1 0
....................................................................................................................................................................................................................TTTTGGTTTAAGAGAGCTCCTGCGC.............. 25 0 9 0.33 3 1 1 0 0 1 0
.............................TAGAGCTGGAAAAACATCGATGTT...................................................................................................................................................................................................... 24 0 14 0.29 4 4 0 0 0 0 0
.............................TAGAGCTGGAAAAACATCGATGTTG..................................................................................................................................................................................................... 25 0 11 0.27 3 0 3 0 0 0 0
................................................................................................................................................................TGAGATCATTGTGGAAGCTGTTT.................................................................... 23 3 4 0.25 1 0 0 1 0 0 0
..........................................................................TGTTTTGGGATGAAAACATCGATTATAA..................................................................................................................................................... 28 0 4 0.25 1 0 1 0 0 0 0
................................................................................................................................................................TTAGATCATAAAGGAAGCTGTTTTT.................................................................. 25 1 4 0.25 1 1 0 0 0 0 0
................................................................................................................................................................TGAGATCATCTTGGAAGCTGTTT.................................................................... 23 3 4 0.25 1 0 0 1 0 0 0
...........................................................................GTTTTGGGATGAAAACATCGA........................................................................................................................................................... 21 0 4 0.25 1 0 1 0 0 0 0
................................................................................................................................................................TGAGATCATAATGTAAGCTGTTC.................................................................... 23 3 4 0.25 1 0 0 1 0 0 0
................................................................................................................................................................TGAGATCATTTGGGAAGCTGTT..................................................................... 22 3 4 0.25 1 0 0 1 0 0 0
................................................................................................................................................................TGAGATCATATTGGAAGCT........................................................................ 19 2 5 0.20 1 0 0 1 0 0 0
......................................................................................................................................................................................................................................CCTGCGCTCACTAATGACTTG 21 0 5 0.20 1 0 1 0 0 0 0
................................................................................................................................................................TGAGATCATATTGTAAGCTGTTT.................................................................... 23 3 5 0.20 1 0 0 1 0 0 0
........TGACTGGTCGTGGTAAAGGT............................................................................................................................................................................................................................... 20 0 16 0.19 3 0 2 0 1 0 0
..............................AGAGCTGGAAAAACATCGATGTTGG.................................................................................................................................................................................................... 25 0 11 0.18 2 0 1 0 1 0 0
.............................TAGAGCTGGAAAAACATCGATGTTGGC................................................................................................................................................................................................... 27 0 11 0.18 2 1 1 0 0 0 0
....................................................................................TGAAAACATCGATTATAATCG.................................................................................................................................................. 21 0 6 0.17 1 0 0 0 0 1 0
................CGTGGTAACGGTGTAGC.......................................................................................................................................................................................................................... 17 2 6 0.17 1 0 0 1 0 0 0
..................................................................GTTGTCGATGTTTTGGGATGAAAA................................................................................................................................................................. 24 0 6 0.17 1 0 0 0 0 1 0
.............................................................TCGATGTTGTCGATGTTTTGGGA....................................................................................................................................................................... 23 0 7 0.14 1 0 0 0 0 1 0
.............................TAGAGCTGGAAAAACATCGATGT....................................................................................................................................................................................................... 23 0 14 0.14 2 1 1 0 0 0 0
................................................................................................................................................................TGAGATCATTATGCAAGCTGTT..................................................................... 22 3 7 0.14 1 0 0 1 0 0 0
..................................................................................GATGAAGACATAGATTATAAC.................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 1
.......................................................................................................................................................................................................................TGGTTTAAGAGAGCTCCTGCGCTCACTAA....... 29 0 8 0.13 1 0 1 0 0 0 0
..........ACTGGTCGTGGTAAAGGTG.............................................................................................................................................................................................................................. 19 0 16 0.13 2 0 0 0 0 0 2
.......................................................................................................................................................................................................................TGGTTTAAGAGAGCTCCTGCGCTCACTT........ 28 1 8 0.13 1 0 1 0 0 0 0
.TGAAAAATGACTGGTCGTGGTAAAG................................................................................................................................................................................................................................. 25 0 16 0.13 2 1 0 0 0 1 0
TTGAAAAATGACTGGTCGTGGTAAAGG................................................................................................................................................................................................................................ 27 0 16 0.13 2 1 1 0 0 0 0
...GAAAATGACTGGTCGTGGT..................................................................................................................................................................................................................................... 19 1 16 0.13 2 0 0 0 2 0 0
......AATGACTGGTCGTGGTAAA.................................................................................................................................................................................................................................. 19 0 16 0.13 2 1 0 0 1 0 0
......................................................................................................................................................................................................................TTGGTTTAAGAGAGCTCCTGCGCT............. 24 0 8 0.13 1 0 1 0 0 0 0
........................................................................................................................................................................................................................GGTTTAAGAGAGCTCCTGCGCTCA........... 24 0 8 0.13 1 0 1 0 0 0 0
....................................................................................................................................................................................................................TTTTGGTTTAAGAGAGCTCCTGCGCT............. 26 0 8 0.13 1 0 1 0 0 0 0
.......................................AAAACATCGATGTTGGCCACA............................................................................................................................................................................................... 21 0 9 0.11 1 0 1 0 0 0 0
.......................................AAAACATCGATGTTGGCCACAATCG........................................................................................................................................................................................... 25 0 9 0.11 1 0 0 0 0 1 0
.............................................................................................................................................................................................................TAACAATTTTTGGTTTAAGAGAGCTC.................... 26 0 9 0.11 1 1 0 0 0 0 0
..................................................................................................................................................................................................................ATTTTTGGGTTAAGAGAGCTCC................... 22 1 9 0.11 1 0 1 0 0 0 0
..........................................................................................................................................................................................................TGTTAACAATTTTTGGTTTAAGAGAGC...................... 27 0 9 0.11 1 0 1 0 0 0 0
.............................................................................................................................................................................................................TAACAATTTTTGGTTTAAGAGAGCT..................... 25 0 9 0.11 1 1 0 0 0 0 0
...................................TGGAAAAACATCGATGTTGGCCACAAT............................................................................................................................................................................................. 27 0 9 0.11 1 1 0 0 0 0 0
........................................................................................................................................................................TAAAGGAAGCTGTTTTTGTTC.............................................................. 21 0 9 0.11 1 0 0 0 0 1 0
..............................................CGATGTTGGCCACAATCGATG........................................................................................................................................................................................ 21 0 9 0.11 1 0 1 0 0 0 0
.............................................................................................................................................................................................................TAACAATTTTTGGTTTAAGAGAGCTCC................... 27 0 9 0.11 1 1 0 0 0 0 0
.........................................AACATCGATGTTGGCCACAATCGAT......................................................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0 0
........................................AAACATCGATGTTGGCCACAAT............................................................................................................................................................................................. 22 0 9 0.11 1 1 0 0 0 0 0
........................................................................................................................................................................TAAAGGAAGCTGTTTTTGTTCAAAAA......................................................... 26 0 9 0.11 1 0 0 0 0 1 0
.........................................GACCTCGATGTTGGCCAC................................................................................................................................................................................................ 18 2 20 0.10 2 2 0 0 0 0 0
..............................AGAGCTGGAAAAACATCGATGTTGGC................................................................................................................................................................................................... 26 0 11 0.09 1 0 1 0 0 0 0
..................................................................................................ATAATCGATGAAGGAAAAAAAAA.................................................................................................................................. 23 3 11 0.09 1 0 0 0 0 1 0
.............................TAGAGCTGGAAAAACATCGATGTTGGCC.................................................................................................................................................................................................. 28 0 11 0.09 1 1 0 0 0 0 0
................................AGCTGGAAAAACATCGATGTTGG.................................................................................................................................................................................................... 23 0 11 0.09 1 0 1 0 0 0 0
...................................TGGAAAAACATCGATGTTGG.................................................................................................................................................................................................... 20 0 11 0.09 1 1 0 0 0 0 0
.............................TAGAGCTGGAAAAACATCGATTTTGGC................................................................................................................................................................................................... 27 1 11 0.09 1 0 0 0 1 0 0
.............................TAGCGCTGGAAAAACATCGATGTTG..................................................................................................................................................................................................... 25 1 11 0.09 1 0 0 0 0 1 0
.............................TAGAGCTGAAAAAACATCGATGTTGG.................................................................................................................................................................................................... 26 1 12 0.08 1 0 1 0 0 0 0
........................................................................................................................................................................................................................GGTTTAAGAGTGCACCTGCC............... 20 3 13 0.08 1 1 0 0 0 0 0
.............................TAGAGCTGGAAAAACATCGA.......................................................................................................................................................................................................... 20 0 15 0.07 1 1 0 0 0 0 0
.........................................GACCTCGATGTTGGCCACA............................................................................................................................................................................................... 19 2 15 0.07 1 1 0 0 0 0 0
.............................TAGAGCTGGAAAAACATCGATG........................................................................................................................................................................................................ 22 0 15 0.07 1 0 0 0 1 0 0
.............................TAGTGCTGGAAAAACATCGATGC....................................................................................................................................................................................................... 23 2 15 0.07 1 1 0 0 0 0 0
.............................TAGAGCTGGAAAAACATCGAT......................................................................................................................................................................................................... 21 0 15 0.07 1 0 1 0 0 0 0
.TGAAAAATGACTGGTCGTGGTAAAGG................................................................................................................................................................................................................................ 26 0 16 0.06 1 1 0 0 0 0 0
.....AAATGACTGGTCGTGGTAAA.................................................................................................................................................................................................................................. 20 0 16 0.06 1 1 0 0 0 0 0
.TGAAAAATAACTGGTCGTGGTAAAGG................................................................................................................................................................................................................................ 26 1 16 0.06 1 0 1 0 0 0 0
.....AAATGACTGGTCGTGGTAAAGGT............................................................................................................................................................................................................................... 23 0 16 0.06 1 0 0 0 0 1 0
.........GACTGGTCGTGGTAAAGGT............................................................................................................................................................................................................................... 19 0 16 0.06 1 0 0 0 0 1 0
.......ATGACTGGTCGTGGTAAAG................................................................................................................................................................................................................................. 19 0 16 0.06 1 0 0 0 1 0 0
........TGACTGGTCGTGGTAAAGGTG.............................................................................................................................................................................................................................. 21 0 16 0.06 1 0 0 0 0 1 0
.....AAATGACTGGTCGTGGTAAAGGTG.............................................................................................................................................................................................................................. 24 0 16 0.06 1 0 0 0 1 0 0
.....ATATGACTGGTCGTGGTAAAG................................................................................................................................................................................................................................. 21 1 16 0.06 1 1 0 0 0 0 0
..GGAAAATGACTGGTCGTGGTAT................................................................................................................................................................................................................................... 22 2 16 0.06 1 1 0 0 0 0 0
..GGAAAATGACTGGTCGTGGTAAA.................................................................................................................................................................................................................................. 23 1 16 0.06 1 1 0 0 0 0 0
...AAAAATGACTGGTCGTGGTAAA.................................................................................................................................................................................................................................. 22 0 16 0.06 1 0 1 0 0 0 0
.........GACTGGTCGTGGTAAAGG................................................................................................................................................................................................................................ 18 0 16 0.06 1 0 1 0 0 0 0
.....AAATGACTGGTCGTGGTA.................................................................................................................................................................................................................................... 18 0 16 0.06 1 0 1 0 0 0 0
TTGAAAAATGACTGGTCGTGGTA.................................................................................................................................................................................................................................... 23 0 16 0.06 1 1 0 0 0 0 0
.TGAAAAATGACTGGTCGTGGTAAAGGTG.............................................................................................................................................................................................................................. 28 0 16 0.06 1 0 1 0 0 0 0
........TGACTGGTCGTGGTAAAG................................................................................................................................................................................................................................. 18 0 16 0.06 1 0 0 0 1 0 0
....AAAATGACTGGTCGTGGGA.................................................................................................................................................................................................................................... 19 1 16 0.06 1 0 0 0 1 0 0
..GAAAAATGACTGGTCGTGGT..................................................................................................................................................................................................................................... 20 0 16 0.06 1 0 0 0 1 0 0
TTGAAAAATGACTGGTTGTGG...................................................................................................................................................................................................................................... 21 1 16 0.06 1 1 0 0 0 0 0
.TTAAAAATGACTGGTCGTGGTAAAG................................................................................................................................................................................................................................. 25 1 16 0.06 1 1 0 0 0 0 0
......CATGTCTGGTCGTGGTAAAGGT............................................................................................................................................................................................................................... 22 2 16 0.06 1 1 0 0 0 0 0
........TGATTGGTCGTGGTAAAGGT............................................................................................................................................................................................................................... 20 1 16 0.06 1 0 0 0 1 0 0
..GAAAAATGACTGGTCGTGGTAAA.................................................................................................................................................................................................................................. 23 0 16 0.06 1 0 0 0 1 0 0
......AATGACTGGTCGTGGTAAAG................................................................................................................................................................................................................................. 20 0 16 0.06 1 0 0 0 1 0 0
......AATGACTGGTCGTGGTAAAGG................................................................................................................................................................................................................................ 21 0 16 0.06 1 1 0 0 0 0 0
....AAAATGACTGGTCGTGGTAAAGG................................................................................................................................................................................................................................ 23 0 16 0.06 1 0 0 0 0 1 0
...AAAAATGACTGGTCGTGGTA.................................................................................................................................................................................................................................... 20 0 16 0.06 1 1 0 0 0 0 0
..GAAAAATGACTGGTCGTGGC..................................................................................................................................................................................................................................... 20 1 16 0.06 1 1 0 0 0 0 0
.TTAAAAATGACTGGTCGTGGTAAAGGT............................................................................................................................................................................................................................... 27 1 16 0.06 1 1 0 0 0 0 0
....AAATTGACTGGTCGTGGTAAAG................................................................................................................................................................................................................................. 22 1 16 0.06 1 1 0 0 0 0 0
....AAAATGACTGGTCGTGGTAAAGGTG.............................................................................................................................................................................................................................. 25 0 16 0.06 1 1 0 0 0 0 0
..........ACTGGTCGTGGTAAAGGT............................................................................................................................................................................................................................... 18 0 16 0.06 1 0 1 0 0 0 0
...AAAAATGACTGGTCGTGGT..................................................................................................................................................................................................................................... 19 0 16 0.06 1 0 0 0 1 0 0
...AAAAATGACTGGTCCTTGTAAA.................................................................................................................................................................................................................................. 22 2 16 0.06 1 0 0 0 1 0 0
.........GACTGGTCGTGGTAAAGGTG.............................................................................................................................................................................................................................. 20 0 16 0.06 1 0 1 0 0 0 0
TTGAAAAATGACTTCTCGCGGTAAAG................................................................................................................................................................................................................................. 26 3 17 0.06 1 0 0 0 1 0 0
....................................................................................................AATCGATAATCCACAAAAAAAAA................................................................................................................................ 23 3 19 0.05 1 0 0 0 1 0 0
...............................................................................................................................................................CTGAGATAATAACGGAAGC......................................................................... 19 3 20 0.05 1 0 0 1 0 0 0
........TGGCCGGGCGTGGTAAAGGTG.............................................................................................................................................................................................................................. 21 3 20 0.05 1 0 0 1 0 0 0
................................................................................................................................................................TGAGAGCAGAATGGAAGCTG....................................................................... 20 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

AACTTTTTACTGACCAGCACCATTTCCACATCTCGACCTTTTTGTAGCTACAACCGGTGTTAGCTACAACAGCTACAAAACCCTACTTTTGTAGCTAATATTAGCTAATAGCTTTTTTTTTTTGCTTATAAAAAACAGCAAATTTAAATTGAATAAATTAACTCTAGTATTTCCTTCGACAAAAACAAGTTTTTATTGTTGTACAATTGTTAAAAACCAAATTCTCTCGAGGACGCGAGTGATTACTGAAC
*******************************************************************...........((.((((((..((((..(((((((...........(((((.(((.....))))))))..............)))))))....))))..))...))))))************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V105
male body		 V039
embryo
...............AGCACCATTTCCACATCTCGACCT.................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
................................................................................................................................................TAAATTGAATAAATTAACTCTAGTAT................................................................................. 26 0 3 0.33 1 0 1 0 0
...................................................................................................................................................................CTAGTATTTCCTTCGACAAAAACAA............................................................... 25 0 3 0.33 1 0 1 0 0
.....................................................................................................................................................TGAATAAATTAACTCTAGTA.................................................................................. 20 0 4 0.25 1 1 0 0 0
.............................................AGCTACAACCGGTGTTAGCTACAACAG................................................................................................................................................................................... 27 0 8 0.25 2 0 2 0 0
.................................................ACAACCGGTGTTAGCTACAACAGCT................................................................................................................................................................................. 25 0 9 0.22 2 2 0 0 0
....................................................................................................................................................................................................................................GAGGACGCGAGTGATTACTGAAC 23 0 5 0.20 1 0 0 1 0
................................................................................................................................................................................................................................TCTCGAGGACGCGAGTAATTACTGAAC 27 1 5 0.20 1 0 0 1 0
...................................................................................................................................................................................................................................CGAGGACGCGAGTGATTACTGAAC 24 0 5 0.20 1 0 0 1 0
...................................................................................................................................................................................................................................CGAGGACGCGAGTGATTACTG... 21 0 5 0.20 1 0 0 1 0
...........................CCATCTCGACCTTTTTGTAGCTACAA...................................................................................................................................................................................................... 26 1 6 0.17 1 0 1 0 0
.................................................................ACAACAGCTACAAAACCCTACTTTT................................................................................................................................................................. 25 0 6 0.17 1 1 0 0 0
.............................................................AGCTACAACAGCTACAAAACCCTAC..................................................................................................................................................................... 25 0 7 0.14 1 0 1 0 0
.................................................................ACAACAGCAACAGAACCCTAAT.................................................................................................................................................................... 22 3 8 0.13 1 0 1 0 0
.....................................................CCGGTGTTAGCTACAACAGCT................................................................................................................................................................................. 21 0 9 0.11 1 0 1 0 0
.................................CGACCTTTTTGTAGCTACTACC.................................................................................................................................................................................................... 22 1 11 0.09 1 0 1 0 0
...............................CTCGACCTTTTTGTAGCTACAACC.................................................................................................................................................................................................... 24 0 11 0.09 1 1 0 0 0
.................................CGACCTTTTTGTAGCTACAACC.................................................................................................................................................................................................... 22 0 11 0.09 1 0 1 0 0
..............................TCTCGACCTTTTTGTAGCTACAACC.................................................................................................................................................................................................... 25 0 11 0.09 1 1 0 0 0
.................................CGACCTTTTTGTAGCTAC........................................................................................................................................................................................................ 18 0 15 0.07 1 0 1 0 0
......GTACAGACCAGCACCATTTC................................................................................................................................................................................................................................. 20 2 16 0.06 1 0 0 0 1
...TTGTCACGGACCAGCACCATTTCCAC.............................................................................................................................................................................................................................. 26 3 16 0.06 1 1 0 0 0
.................................................................................TCTACTTCTGTATCTAATAT...................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_965:1648-1898 + dan_3408 TTGAAAAATGACTGGTC---GTGGTAAAGGTGTAGAGCTGGAAAAACATCGATGTTGGCCACAATCGATGTTGTCG-ATGTTTTGGGATGAAAACATC----------------------GATTAT-----------AATCGATT---ATCGAA---A-AAAA-AAAAC-GAA---TA-----TTT-TTTGTCGTTTAAAT-------TTA------------------------------------ACTTATTTAATTGAGATCATAAAGGAA----------------GCTGTTTTTGTTCAAAAATAACAACATGTTAACAATTTTTGGTTTAAGAGAGCTCCTGCGCTCACTAATGACTTG
droBip1 scf7180000395836:3012-3233 - T--------------------------------AGAGCTGGAAAAACATCGATGTTGGCCACAATCGATGTTGTCG-ATGTTTTGGGATGAAAACATC----------------------GATTAT-----------AATCGATT---ATCGAA---A-AAAA-A-AAC-AAA---TA-----TTTTTTTGCCGTTTAAAT-------TAA------------------------------------TATTATTTAATTGAGATCAGAAAGGAA----------------ACTGTTTTTGTTCAAAAATAACAACTTATTCACTATATTTGGTTTTAGAGAACTCCTACGCTCACTAATGACTTG
droKik1 scf7180000302697:66081-66301 + G-------------------------------TAGAGCTGGAAAAACATCGATGTTGGCCACAATCGATGTTTGCG-ATGTTTTCGAATGAAAACATC----------------------GATTAT-----------AATCGATT---ATCGCA---A-AAAA---AAC-GAA---TA-----TTTTTTTGCCGTTTAAAT-------T-A------------------------------------ATGTATTTAATTGAGATCAAAAAGGAA----------------GTTATTTTTGTTTAAAAATAGCAACATATTAACTATTTTAGGTTTTAGGGAGCTCCGGCGCTCACTAATCACTTG
droFic1 scf7180000453926:463633-463874 + TCTTG----------CCATGGGA--------GTAGAGGTGCACAAACATCGATGTTCGTGCCCATCGATGTTTTCG-ATGTTTTCAAAAAAAAA------------------------------ACATCGACTGAAACATCAATG---TTAA-A---A-AAAA---AAAGAAAAGGCA-----AAACAATACAAACGAT-------AACAA-TGAGGTTTATTTGA---------------------GATCAAT-------------TAAAGTG----------------TCTATTTTTGTTGAGGAAAAGAAGTTGATCAACAATTTCAGGTTTAAGCCTTGTTCTGCGATCAGATACAGTTTG
droEle1 scf7180000487202:11133-11346 - T--------------------------------------GGAAAACAATAGATATTTGGGACCATCGATGTTTTAG-ATGTTTTTCAAACAAAACATC----------------------GAT----------GAAACATCGACGTTTTTAGTTAGAGTAA-A-A---A-AA-----------TTATTTAACAACTAAA-------A-AATGTATTC-----------------------------------TTGTTTTGAGATC----AGGTT----------------TTTGTTCTTCTTAATGAATAAGAATTCATCCACAATATTTAATTTAAGGCAGTTCCTGCGATCGGAAACAATTTG
droRho1 scf7180000768408:232-480 + TTGGCACATGCCTGGTG---AAA--------GTAGAGGTGCAGAAACATCGATGTTCGTGCCCATCGATGTTTTCG-ATGTTTTAC-AAAAAAACATC----------------------GAGT---------GAAACATCGATA---GTTTAA---A-AAAA-AAAAG-GAC----AAA-AACAGGAAAACAAACGAT-------AACAA-TGAGGTTTATTTGA---------------------GATCATT-------------TAAAGTG----------------TCTATTTTTGTTGAGGAAAAGAAGTTGATCAACAACTTCAGGTTTAAGCCTTGTTCTGCGATCAGATACAGATTG
droBia1 scf7180000301223:8165-8378 - G-------------------------------TAGAGCTGGAAAAAC--------TGGCCACAATCGATGTTTTTG-ATGTTTTGGGATGAAAACATC----------------------GATTAT-----------AATCGATT---ATCGTA---A-AAAA---AAC-GAA---TA-----TTTGTTTTCCGTTTAAAT-------TTA------------------------------------ACTAATTTAAGTGAGATCATACAGAAA----------------GCTGTTTTATTTAAAAAATAGGAACATATTAAGAATTTTTGGTTTAAGAAAGCTCCTGCGCTCGCTAATGACTTG
droTak1 scf7180000415858:349728-349941 + AACGT-----------------T--------TTAGAGGTGGAGAAACATCGATGTTTGCGAACATCGATGTTTTCG-ATGTTTTTGGTCAAAAACATC----------------------GAG----------GTTTCATCGATG---TTTAGA---A-AA---A---A-AAT---TA--TTTTTT-TT------TTAA-T-----T-ACAGTTTTA------------------------------TTTTATTTAAAT--------------G----------------TTGATTCTTGTTTAGAAACAACAATTTGTCCACAACCAAGGAAGAAAGTCTGGTGCGACGATCTGATATCAACTG
droEug1 scf7180000409859:56423-56588 - GGG-------------------------------------------------------------------------------------TATAAACATC----------------------GATTAT-----------AATCGGTT---ATCGTA---A-AA------AC-GAA---TA-----TTTGTTTGCCGTTTAAAT-------TAA------------------------------------ATTAATTTAATCGAGATCATATAGGGA----------------GCTGTTTGTATTTAAAAATAACAACAGTTTAAAAAATATTGGTTTAAGAGAGCTCCTGCGCTAACTAATGACCTG
dm3 chrX:5859914-5860023 + T--------------------------------AGAGCTGGAAAAACATCGATGCTCGTCGCCGTCGATGTTTTCG-ATGTTTTATGGCGAGAACATT----------------------GAC---------------------T---ATCGAA---A-AATA---AAC-GAA---AA-----A------------------------------------------------------------------------------------------------------------------------------------TATTA------CTCTTTCTG-----------TT-----------CTTTT
droSim2 4:866603-866785 - T--------------------------------AGAGGTGGAGAAACATTCATGTTGGTGGACATCGATGTTTTAG-AAGTTTGTGGCGAAAAACATCGATGTTA-TTAA---------------------------------------AAGA----ATAA-AAA---A-AAT---TA-----TCT-------TTTTAAAT-------TTA------------------------------------AGATATATAAATAAAAATACATAATAATATAGTTTTATCACAC--------GGTTTAAAGTTTATG------TAATAATATTTTATTTAA----------------------------
droSec2 scaffold_40:128481-128658 - T--------------------------------AGAGGTGGAGAAACATTCATGTTGGTGGACATCGAAGTTTTAG-ACGTTTTTGCCGAAAAACATCGATGTTA-TTAA---------------------------------------TAGA----ATAA-AAA---A-AAT---TA-----TCT-------TTTTAAAT-------TTA------------------------------------AGATATATAAATAAAAATACATAATAATATAGTTTTAG---------------------------------CACACGGTTTAAAGTTTATGT--------------AATAATATTTTA
droYak3 chr2h:25799-25940 - ATCAC------------------------------------------------------------------------------------------------------------------------------------ATTCG-------TGGATAGAAAAA-------T-AAA---AA-----TTT---------TTAAAACTAAAT-TAA------------------------------------GTTAACCTAATTGG------AGATCCA----------------TTTATTTTTGTTGCGAAACAATAACCGGTCCACTGTTTTAGGTTTAAGCGATGCTCTACGATCGCTTATTAACAG
droEre2 scaffold_4690:3197773-3197863 + GGTAA---------------AGG--------CTAGAGCTGGAAAAACATCGATGTTTGCCAGCAACGATATTTTTG---------GG----------C----------------------GACTAT-----------AATCGATT---ATCGAA---A-AAAG-AAACG-GAA---TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_15:42897-43004 + CGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAT-------TTG------------------------------------GCTCATTTATTTGGCGA------TCCA----------------TATGTTCCTATTTAGGAACGTCAGCATCTCCACATTTTTAGGTTTTAGTGATGCTCTTCTCTCGCTTGCTATTAA
droPer2 scaffold_3:726965-727124 + TTGTA-----------------------------GAGCT-------------------------------------------TATAGGAAAAAACAT------------------------GATTT-----------AATCGATT---AAATCG---G-GGAG-GAACA-GAA---CA-----TTT-TTTATTTTTGAGAT-------CCA----------------------------------TGGCCTTATTGATCAAGAA------CTCA----------------CTGGCTACTGCCTGCAAATAACAACTTATTAACATTATATTGTTCG-----------GCTATAAG------GTTC
droWil2 scf2_1100000002421:1487-1753 - GTCGTGGGAA---GTCG---GCA--------GTAGAGGTGCAAAACTATCGATGGTGGGCGCCATCGATTGTGGACGATAGT-AAATTCCAAACCATCGATGGTGGTCGATAGTACCATCGATAGT-----------GGCCGATA---GTCGAA---A-TAAA-A-AAA-CCG---TG-----TTT-TTTATCATTGAAAA-------TTA----------GTAAG----------------GATTGTTTTTTTTATGT----GTTTATTGCCA----------------AAGATTTTTGTTTAAAAACAGTAAAACGTTTACATGTTCTTCTTTGAGCCTTGTTTGCCTATCAGAAATAATTTG
droVir3 scaffold_9952:1827-1855 + GTGAAAAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG
droMoj3 scaffold_6395:2500-2750 + T--------------------------------AGAGGTGGAGAACTATCGATATTGGACGCTCTCGATTTTTGGT-GATTGTTTATTTTGAACCATCGATATTG-TCGATGGTGTCATCGACAGTATCGATAGCGCCATCGAAA---GTGTAC---C-CCAA-CAGCC-AAA---TA-----TAT------------------------------------TTGAATTGAATATAAGATATA--TATATTGTTTATTTG--A-------TCCA----------------AAAGTTACGATTTAAAAATAAAAGAATGTTAATGTTTTTTTCTTTGAGTCGTGTTCGCCTCTCTGAAATAATTTG
droGri2 scaffold_6001:199-244 + AACAA---TGTCTGGTC---GTG--------GTAAAGGTGGAAAAGTA----------------------------------------------------------------------------------------------------------------------AAGGGAAAGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTGAAAAATGACTGGTC---GTGGTAAAGGTGTAGAGCTGGAAAAACATCGATGTTGGCCACAATCGATGTTGTCG-ATGTTTTGGGATGAAAACATC----------------------GATTAT-----------AATCGATT---ATCGAA---A-AAAA-AAAAC-GAA---TA-----TTT-TTTGTCGTTTAAAT-------TTA------------------------------------ACTTATTTAATTGAGATCATAAAGGAA----------------GCTGTTTTTGTTCAAAAATAACAACATGTTAACAATTTTTGGTTTAAGAGAGCTCCTGCGCTCACTAATGACTTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................TAGAGCTGGAAAAACATCGATGTTGG...................................................................................................................................................................................................................................................................................................................26112.09231461020
.................................................................................................................................................................................................................................................................TTGAGATCATAAAGGAA----------------GCTGTTTT...................................................................2531.675140000
.........GACTGGTC---GTGGTAAAGGTGTAGAG........................................................................................................................................................................................................................................................................................................................................2511.001100000
.................................................................................................................................................................................................................................................................TTGAGATCATAAAGGAA----------------GCTGTTTTT..................................................................2631.003030000
...........................AGGTGTAGAGCTGGAAAAAA..............................................................................................................................................................................................................................................................................................................................2011.001001000
............TGGTC---GTGGTAAAGGTGTAGA.........................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................TTGAGATCATAAAGGAA----------------GCTGTTT....................................................................2431.003210000
.................................................................................................................................................................................................................................................................TTGAGATCATAAAGGAA----------------GCTGTTC....................................................................2430.672020000
...................................................................................................................................................................................................................................................................GAGATCATAAAGGAA----------------GCTGTTTTTG.................................................................2530.672200000
..................................................................................................................................................................................................................................................................TGAGATCATAAAGGAA----------------GCTGTTTTT..................................................................2530.672110000
..................................................................................................................................................................................................................................................................TGAGATCATAAAGGAA----------------GCTGTTTT...................................................................2430.672020000
..................................................................................................................................................................................................................................................................TGAGATCATAAAGGAA----------------GCTGTTTTTG.................................................................2630.672110000
..............................................................................................................................................................................................................................................................................................................................................TAAGAGAGCTCCTGCGCTCACTAATGACT..2950.402200000
.................................................................................................................................................................................................................................................................TTGAGATCATAAAGGAA----------------GCTGT......................................................................2230.331010000
.............................................................................................................................................................................................................................................................TTAATTGAGATCATAAAGGAA----------------GCTGT......................................................................2630.331010000
...............................................................................................................................................................................................................................................................AATTGAGATCATAAAGGAA----------------GCTGTT.....................................................................2530.331010000
...........................................AAACATCGATGTTGGCCACAATCG..........................................................................................................................................................................................................................................................................................................2490.333000021
..................................................................................................................................................................................................................................................................TGAGATCATAAAGGAA----------------GCTGTTTTTGT................................................................2730.331010000
................................................................................................................................................................................................................................................................ATTGAGATCATAAAGGAA----------------GCTGTTTT...................................................................2630.331100000
...............................................................................................................................................................................................................................................................AATTGAGATCATAAAGGAA----------------GCTGTTTT...................................................................2730.331010000
.....................................................................................................................................................................................................................................................................GATCATAAAGGAA----------------GCTGTTTTTG.................................................................2330.331100000
...............................GTAGAGCTGGAAAAACATCGATGTT.....................................................................................................................................................................................................................................................................................................................2560.332110000
......................................................................................................................................................................................................................................................................................................................................TTTTGGTTTAAGAGAGCTCCTGCGC..............2590.333110010
................................TAGAGCTGGAAAAACATCGATGTT.....................................................................................................................................................................................................................................................................................................................24140.294040000
................................TAGAGCTGGAAAAACATCGATGTTG....................................................................................................................................................................................................................................................................................................................25110.273300000
..............................................................................TGTTTTGGGATGAAAACATC----------------------GATTAT-----------AA..................................................................................................................................................................................................................................2840.251100000
...............................................................................GTTTTGGGATGAAAACATC----------------------GA...................................................................................................................................................................................................................................................2140.251100000
........................................................................................................................................................................................................................................................................................................................................................CCTGCGCTCACTAATGACTTG2150.201100000
........TGACTGGTC---GTGGTAAAGGT..............................................................................................................................................................................................................................................................................................................................................20160.193201000
.................................AGAGCTGGAAAAACATCGATGTTGG...................................................................................................................................................................................................................................................................................................................25110.182101000
................................TAGAGCTGGAAAAACATCGATGTTGGC..................................................................................................................................................................................................................................................................................................................27110.182110000
........................................................................................TGAAAACATC----------------------GATTAT-----------AATCG...............................................................................................................................................................................................................................2160.171000010
.....................................................................GTTGTCG-ATGTTTTGGGATGAAAA...............................................................................................................................................................................................................................................................................2460.171000010
................................................................TCGATGTTGTCG-ATGTTTTGGGA.....................................................................................................................................................................................................................................................................................2370.141000010
................................TAGAGCTGGAAAAACATCGATGT......................................................................................................................................................................................................................................................................................................................23140.142110000
.........................................................................................................................................................................................................................................................................................................................................TGGTTTAAGAGAGCTCCTGCGCTCACTAA.......2980.131100000
..........ACTGGTC---GTGGTAAAGGTG.............................................................................................................................................................................................................................................................................................................................................19160.132000002
.........................................................................................................................................................................................................................................................................................................................................TGGTTTAAGAGAGCTCCTGCGCTCACTT........2880.131100000
.TGAAAAATGACTGGTC---GTGGTAAAG................................................................................................................................................................................................................................................................................................................................................25160.132010010
TTGAAAAATGACTGGTC---GTGGTAAAGG...............................................................................................................................................................................................................................................................................................................................................27160.132110000
......AATGACTGGTC---GTGGTAAA.................................................................................................................................................................................................................................................................................................................................................19160.132011000
........................................................................................................................................................................................................................................................................................................................................TTGGTTTAAGAGAGCTCCTGCGCT.............2480.131100000
..........................................................................................................................................................................................................................................................................................................................................GGTTTAAGAGAGCTCCTGCGCTCA...........2480.131100000
......................................................................................................................................................................................................................................................................................................................................TTTTGGTTTAAGAGAGCTCCTGCGCT.............2680.131100000
..........................................AAAACATCGATGTTGGCCACA..............................................................................................................................................................................................................................................................................................................2190.111100000
..........................................AAAACATCGATGTTGGCCACAATCG..........................................................................................................................................................................................................................................................................................................2590.111000010
...............................................................................................................................................................................................................................................................................................................................TAACAATTTTTGGTTTAAGAGAGCTC....................2690.111010000
............................................................................................................................................................................................................................................................................................................................TGTTAACAATTTTTGGTTTAAGAGAGC......................2790.111100000
...............................................................................................................................................................................................................................................................................................................................TAACAATTTTTGGTTTAAGAGAGCT.....................2590.111010000
......................................TGGAAAAACATCGATGTTGGCCACAAT............................................................................................................................................................................................................................................................................................................2790.111010000
..........................................................................................................................................................................................................................................................................TAAAGGAA----------------GCTGTTTTTGTTC..............................................................2190.111000010
.................................................CGATGTTGGCCACAATCGATG.......................................................................................................................................................................................................................................................................................................2190.111100000
...............................................................................................................................................................................................................................................................................................................................TAACAATTTTTGGTTTAAGAGAGCTCC...................2790.111010000
............................................AACATCGATGTTGGCCACAATCGAT........................................................................................................................................................................................................................................................................................................2590.111010000
...........................................AAACATCGATGTTGGCCACAAT............................................................................................................................................................................................................................................................................................................2290.111010000
..........................................................................................................................................................................................................................................................................TAAAGGAA----------------GCTGTTTTTGTTCAAAAA.........................................................2690.111000010
.................................AGAGCTGGAAAAACATCGATGTTGGC..................................................................................................................................................................................................................................................................................................................26110.091100000
................................TAGAGCTGGAAAAACATCGATGTTGGCC.................................................................................................................................................................................................................................................................................................................28110.091010000
...................................AGCTGGAAAAACATCGATGTTGG...................................................................................................................................................................................................................................................................................................................23110.091100000
......................................TGGAAAAACATCGATGTTGG...................................................................................................................................................................................................................................................................................................................20110.091010000
................................TAGAGCTGGAAAAACATCGA.........................................................................................................................................................................................................................................................................................................................20150.071010000
................................TAGAGCTGGAAAAACATCGATG.......................................................................................................................................................................................................................................................................................................................22150.071001000
................................TAGAGCTGGAAAAACATCGAT........................................................................................................................................................................................................................................................................................................................21150.071100000
.TGAAAAATGACTGGTC---GTGGTAAAGG...............................................................................................................................................................................................................................................................................................................................................26160.061010000
.....AAATGACTGGTC---GTGGTAAA.................................................................................................................................................................................................................................................................................................................................................20160.061010000
.....AAATGACTGGTC---GTGGTAAAGGT..............................................................................................................................................................................................................................................................................................................................................23160.061000010
.........GACTGGTC---GTGGTAAAGGT..............................................................................................................................................................................................................................................................................................................................................19160.061000010
.......ATGACTGGTC---GTGGTAAAG................................................................................................................................................................................................................................................................................................................................................19160.061001000
........TGACTGGTC---GTGGTAAAGGTG.............................................................................................................................................................................................................................................................................................................................................21160.061000010
.....AAATGACTGGTC---GTGGTAAAGGTG.............................................................................................................................................................................................................................................................................................................................................24160.061001000
...AAAAATGACTGGTC---GTGGTAAA.................................................................................................................................................................................................................................................................................................................................................22160.061100000
.........GACTGGTC---GTGGTAAAGG...............................................................................................................................................................................................................................................................................................................................................18160.061100000
.....AAATGACTGGTC---GTGGTA...................................................................................................................................................................................................................................................................................................................................................18160.061100000
TTGAAAAATGACTGGTC---GTGGTA...................................................................................................................................................................................................................................................................................................................................................23160.061010000
.TGAAAAATGACTGGTC---GTGGTAAAGGTG.............................................................................................................................................................................................................................................................................................................................................28160.061100000
........TGACTGGTC---GTGGTAAAG................................................................................................................................................................................................................................................................................................................................................18160.061001000
..GAAAAATGACTGGTC---GTGGT....................................................................................................................................................................................................................................................................................................................................................20160.061001000
..GAAAAATGACTGGTC---GTGGTAAA.................................................................................................................................................................................................................................................................................................................................................23160.061001000
......AATGACTGGTC---GTGGTAAAG................................................................................................................................................................................................................................................................................................................................................20160.061001000
......AATGACTGGTC---GTGGTAAAGG...............................................................................................................................................................................................................................................................................................................................................21160.061010000
....AAAATGACTGGTC---GTGGTAAAGG...............................................................................................................................................................................................................................................................................................................................................23160.061000010
...AAAAATGACTGGTC---GTGGTA...................................................................................................................................................................................................................................................................................................................................................20160.061010000
..GAAAAATGACTGGTC---GTGGC....................................................................................................................................................................................................................................................................................................................................................20160.061010000
....AAAATGACTGGTC---GTGGTAAAGGTG.............................................................................................................................................................................................................................................................................................................................................25160.061010000
..........ACTGGTC---GTGGTAAAGGT..............................................................................................................................................................................................................................................................................................................................................18160.061100000
...AAAAATGACTGGTC---GTGGT....................................................................................................................................................................................................................................................................................................................................................19160.061001000
.........GACTGGTC---GTGGTAAAGGTG.............................................................................................................................................................................................................................................................................................................................................20160.061100000
droBip1
T--------------------------------AGAGCTGGAAAAACATCGATGTTGGCCACAATCGATGTTGTCG-ATGTTTTGGGATGAAAACATC----------------------GATTAT-----------AATCGATT---ATCGAA---A-AAAA-A-AAC-AAA---TA-----TTTTTTTGCCGTTTAAAT-------TAA------------------------------------TATTATTTAATTGAGATCAGAAAGGAA----------------ACTGTTTTTGTTCAAAAATAACAACTTATTCACTATATTTGGTTTTAGAGAACTCCTACGCTCACTAATGACTTGSizeHit CountTotal NormTotal
No Reads
droKik1
G-------------------------------TAGAGCTGGAAAAACATCGATGTTGGCCACAATCGATGTTTGCG-ATGTTTTCGAATGAAAACATC----------------------GATTAT-----------AATCGATT---ATCGCA---A-AAAA---AAC-GAA---TA-----TTTTTTTGCCGTTTAAAT-------T-A------------------------------------ATGTATTTAATTGAGATCAAAAAGGAA----------------GTTATTTTTGTTTAAAAATAGCAACATATTAACTATTTTAGGTTTTAGGGAGCTCCGGCGCTCACTAATCACTTGSizeHit CountTotal NormTotal
No Reads
droFic1
TCTTG----------CCATGGGA--------GTAGAGGTGCACAAACATCGATGTTCGTGCCCATCGATGTTTTCG-ATGTTTTCAAAAAAAAA------------------------------ACATCGACTGAAACATCAATG---TTAA-A---A-AAAA---AAAGAAAAGGCA-----AAACAATACAAACGAT-------AACAA-TGAGGTTTATTTGA---------------------GATCAAT-------------TAAAGTG----------------TCTATTTTTGTTGAGGAAAAGAAGTTGATCAACAATTTCAGGTTTAAGCCTTGTTCTGCGATCAGATACAGTTTGSizeHit CountTotal NormTotal
No Reads
droEle1
T--------------------------------------GGAAAACAATAGATATTTGGGACCATCGATGTTTTAG-ATGTTTTTCAAACAAAACATC----------------------GAT----------GAAACATCGACGTTTTTAGTTAGAGTAA-A-A---A-AA-----------TTATTTAACAACTAAA-------A-AATGTATTC-----------------------------------TTGTTTTGAGATC----AGGTT----------------TTTGTTCTTCTTAATGAATAAGAATTCATCCACAATATTTAATTTAAGGCAGTTCCTGCGATCGGAAACAATTTGSizeHit CountTotal NormTotal
No Reads
droRho1
TTGGCACATGCCTGGTG---AAA--------GTAGAGGTGCAGAAACATCGATGTTCGTGCCCATCGATGTTTTCG-ATGTTTTAC-AAAAAAACATC----------------------GAGT---------GAAACATCGATA---GTTTAA---A-AAAA-AAAAG-GAC----AAA-AACAGGAAAACAAACGAT-------AACAA-TGAGGTTTATTTGA---------------------GATCATT-------------TAAAGTG----------------TCTATTTTTGTTGAGGAAAAGAAGTTGATCAACAACTTCAGGTTTAAGCCTTGTTCTGCGATCAGATACAGATTGSizeHit CountTotal NormTotal
No Reads
droBia1
G-------------------------------TAGAGCTGGAAAAAC--------TGGCCACAATCGATGTTTTTG-ATGTTTTGGGATGAAAACATC----------------------GATTAT-----------AATCGATT---ATCGTA---A-AAAA---AAC-GAA---TA-----TTTGTTTTCCGTTTAAAT-------TTA------------------------------------ACTAATTTAAGTGAGATCATACAGAAA----------------GCTGTTTTATTTAAAAAATAGGAACATATTAAGAATTTTTGGTTTAAGAAAGCTCCTGCGCTCGCTAATGACTTGSizeHit CountTotal NormTotal
No Reads
droTak1
AACGT-----------------T--------TTAGAGGTGGAGAAACATCGATGTTTGCGAACATCGATGTTTTCG-ATGTTTTTGGTCAAAAACATC----------------------GAG----------GTTTCATCGATG---TTTAGA---A-AA---A---A-AAT---TA--TTTTTT-TT------TTAA-T-----T-ACAGTTTTA------------------------------TTTTATTTAAAT--------------G----------------TTGATTCTTGTTTAGAAACAACAATTTGTCCACAACCAAGGAAGAAAGTCTGGTGCGACGATCTGATATCAACTGSizeHit CountTotal NormTotal
No Reads
droEug1
GGG-------------------------------------------------------------------------------------TATAAACATC----------------------GATTAT-----------AATCGGTT---ATCGTA---A-AA------AC-GAA---TA-----TTTGTTTGCCGTTTAAAT-------TAA------------------------------------ATTAATTTAATCGAGATCATATAGGGA----------------GCTGTTTGTATTTAAAAATAACAACAGTTTAAAAAATATTGGTTTAAGAGAGCTCCTGCGCTAACTAATGACCTGSizeHit CountTotal NormTotal
No Reads
dm3
T--------------------------------AGAGCTGGAAAAACATCGATGCTCGTCGCCGTCGATGTTTTCG-ATGTTTTATGGCGAGAACATT----------------------GAC---------------------T---ATCGAA---A-AATA---AAC-GAA---AA-----A------------------------------------------------------------------------------------------------------------------------------------TATTA------CTCTTTCTG-----------TT-----------CTTTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................GGAAAAACATCGATGCTCGTCA................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droSim2
T--------------------------------AGAGGTGGAGAAACATTCATGTTGGTGGACATCGATGTTTTAG-AAGTTTGTGGCGAAAAACATCGATGTTA-TTAA---------------------------------------AAGA----ATAA-AAA---A-AAT---TA-----TCT-------TTTTAAAT-------TTA------------------------------------AGATATATAAATAAAAATACATAATAATATAGTTTTATCACAC--------GGTTTAAAGTTTATG------TAATAATATTTTATTTAA----------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................TAATAATATAGTTTTATCACAC--------GGTTTA.............................................................2811.00100000000010000000
....................................................................................TGGCGAAAAACATCGATG.......................................................................................................................................................................................................................................................................1830.33110000000000000000
droSec2
T--------------------------------AGAGGTGGAGAAACATTCATGTTGGTGGACATCGAAGTTTTAG-ACGTTTTTGCCGAAAAACATCGATGTTA-TTAA---------------------------------------TAGA----ATAA-AAA---A-AAT---TA-----TCT-------TTTTAAAT-------TTA------------------------------------AGATATATAAATAAAAATACATAATAATATAGTTTTAG---------------------------------CACACGGTTTAAAGTTTATGT--------------AATAATATTTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATCAC------------------------------------------------------------------------------------------------------------------------------------ATTCG-------TGGATAGAAAAA-------T-AAA---AA-----TTT---------TTAAAACTAAAT-TAA------------------------------------GTTAACCTAATTGG------AGATCCA----------------TTTATTTTTGTTGCGAAACAATAACCGGTCCACTGTTTTAGGTTTAAGCGATGCTCTACGATCGCTTATTAACAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GGTAA---------------AGG--------CTAGAGCTGGAAAAACATCGATGTTTGCCAGCAACGATATTTTTG---------GG----------C----------------------GACTAT-----------AATCGATT---ATCGAA---A-AAAG-AAACG-GAA---TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
dp5
CGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAT-------TTG------------------------------------GCTCATTTATTTGGCGA------TCCA----------------TATGTTCCTATTTAGGAACGTCAGCATCTCCACATTTTTAGGTTTTAGTGATGCTCTTCTCTCGCTTGCTATTAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTGTA-----------------------------GAGCT-------------------------------------------TATAGGAAAAAACAT------------------------GATTT-----------AATCGATT---AAATCG---G-GGAG-GAACA-GAA---CA-----TTT-TTTATTTTTGAGAT-------CCA----------------------------------TGGCCTTATTGATCAAGAA------CTCA----------------CTGGCTACTGCCTGCAAATAACAACTTATTAACATTATATTGTTCG-----------GCTATAAG------GTTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GTCGTGGGAA---GTCG---GCA--------GTAGAGGTGCAAAACTATCGATGGTGGGCGCCATCGATTGTGGACGATAGT-AAATTCCAAACCATCGATGGTGGTCGATAGTACCATCGATAGT-----------GGCCGATA---GTCGAA---A-TAAA-A-AAA-CCG---TG-----TTT-TTTATCATTGAAAA-------TTA----------GTAAG----------------GATTGTTTTTTTTATGT----GTTTATTGCCA----------------AAGATTTTTGTTTAAAAACAGTAAAACGTTTACATGTTCTTCTTTGAGCCTTGTTTGCCTATCAGAAATAATTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................TAGAGGTGCAAAACTATCGATGGTGG...................................................................................................................................................................................................................................................................................................................2670.57401030
......................................................................................................................TCGATAGT-----------GGCCGATA---GTCGAA---A-TAAA-.........................................................................................................................................................................................................2740.25100010
..........................................................................................................................TAGT-----------GGCCGATA---GTCGAA---A-TAAA-A-.......................................................................................................................................................................................................2440.25100010
................................................................................................................................................................................................................................................................................................................................TACATGTTCTTCTTTGAGCCTTG......................2350.20101000
...............................................................................................................................................................................................................................................................................................................................TTACATGTTCTTCTTTGAGCCTTGT.....................2550.20101000
....................................................TGGTGGGCGCCATCGATTGTGGACGA...............................................................................................................................................................................................................................................................................................26110.18201010
....................................................TGGTGGGCGCCATCGATTGTGGAC.................................................................................................................................................................................................................................................................................................24110.18200020
.......................................................TGGGCGCCATCGATTGTGGACGATAG............................................................................................................................................................................................................................................................................................26110.18202000
......................................TGCAAAACTATCGATGGTGGGCGC...............................................................................................................................................................................................................................................................................................................2470.14100010
.............................................................................................................................................................................................TATCATTGAAAA-------TTA----------GTAAG----------------GATTGTTT...................................................................................................................2880.13101000
...........................................AACTATCGATGGTGGGCGCCATC...........................................................................................................................................................................................................................................................................................................23100.10100010
...............................................ATCGATGGTGGGCGCCATCGATTG......................................................................................................................................................................................................................................................................................................24100.10101000
.......................................................TGGGCGCCATCGATTGTGGACGAT..............................................................................................................................................................................................................................................................................................24110.09101000
....................................................TGGTGGGCGCCATCGATTGTGGACGTA..............................................................................................................................................................................................................................................................................................27110.09101000
....................................................TGGTGGGCGCCATCGATTGTGGACG................................................................................................................................................................................................................................................................................................25110.09101000
..................................................GATGGTGGGCGCCATCGATTGTGGAAA................................................................................................................................................................................................................................................................................................27110.09100010
droVir3
GTGAAAAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
GTGAAAAATGACTGGTC---GTG----------------------------------G...................................................................................................................................................................................................................................................................................................................21120.678000000020110000000000000000000000000000100000000000000000000030
.........GACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..18200.6513000100110010000000000000001000000000001000000020101000000000300
GTGAAAAATGACTGGTC---G........................................................................................................................................................................................................................................................................................................................................................18120.425000000002010000000000000000101000000000000000000000000000000000
.TGAAAAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..26120.425000000000100000000000000000000000000100000000000000011100000000
.....AAATGACTGGTC---GTG----------------------------------GTA.................................................................................................................................................................................................................................................................................................................18120.425001000002010000000000000000000000001000000000000000000000000000
....AAAATGACTGGTC---GTG----------------------------------GT..................................................................................................................................................................................................................................................................................................................18120.425000000000001020000000010000000000010000000000000000000000000000
GTGAAAAATGACTGGTC---.........................................................................................................................................................................................................................................................................................................................................................17120.425000000000000000000000000000000000000000000000001000000000000004
..GAAAAATGACTGGTC---GTG----------------------------------GTA.................................................................................................................................................................................................................................................................................................................21120.334002000000100000000000000010000000000000000000000000000000000000
..GAAAAATGACTGGTC---GTG----------------------------------....................................................................................................................................................................................................................................................................................................................18120.334000000002000020000000000000000000000000000000000000000000000000
.......ATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..20200.306000000000000000000000000000000000000000000010030000010000010000
..........ACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..17200.306000000000000000000000000000000000000000000000121001000000100000
..GAAAAATGACTGGTC---GTG----------------------------------G...................................................................................................................................................................................................................................................................................................................19120.253000000002000000000000000000010000000000000000000000000000000000
.....AAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.23120.253000000001001000000000000000000000000100000000000000000000000000
..........ACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG19200.255000000004010000000000000000000000000000000000000000000000000000
.........GACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.19200.204000000001000020100000000000000000000000000000000000000000000000
.........GACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG20200.204000010100010000000000000000000000000000000000000000000000000100
..........ACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.18200.204000000202000000000000000000000000000000000000000000000000000000
...AAAAATGACTGGTC---GTG----------------------------------G...................................................................................................................................................................................................................................................................................................................18120.172001000000100000000000000000000000000000000000000000000000000000
..GAAAAATGACTGGTC---GTG----------------------------------GT..................................................................................................................................................................................................................................................................................................................20120.172000000000000020000000000000000000000000000000000000000000000000
.TGAAAAATGACTGGTC---GTG----------------------------------G...................................................................................................................................................................................................................................................................................................................20120.172000100000000000000000000000000000000000000000000000000000001000
.....AAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..22120.172000000000000000000000000000000000000000000000020000000000000000
GTGAAAAATGACTGGTC---GTG----------------------------------GT..................................................................................................................................................................................................................................................................................................................22120.172000100000000010000000000000000000000000000000000000000000000000
GTGAAAAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..27120.172000000000000000000000000000000000000000000000010010000000000000
GTGAAAAATGACTGGTC---GTG----------------------------------....................................................................................................................................................................................................................................................................................................................20120.172000000000000000000000000000000001010000000000000000000000000000
GTGAAAAATGACTGGTC---GT.......................................................................................................................................................................................................................................................................................................................................................19120.172000000000000010000000000000000000010000000000000000000000000000
...........CTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG18200.153001000200000000000000000000000000000000000000000000000000000000
.......ATGACTGGTC---GTG----------------------------------GTAAA...............................................................................................................................................................................................................................................................................................................18200.153000000000000001000000000000000000001000100000000000000000000000
........TGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..19200.153000000000000000000000000000000000000000010000001000000000000100
......AATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.22200.153000000000002010000000000000000000000000000000000000000000000000
.......ATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.21200.102000000000000000001000000000000000010000000000000000000000000000
..GAAAAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.26120.081000100000000000000000000000000000000000000000000000000000000000
..GAAAAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..25120.081000000000000000000000000000000000000000000000001000000000000000
.TGAAAAATGACTGGTC---GT.......................................................................................................................................................................................................................................................................................................................................................18120.081000000000000000000000000000000000000000000000000000000000000001
....AAAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..23120.081000000000000000000000000000000000000000010000000000000000000000
GTGAAAAATGACTGGTC---C........................................................................................................................................................................................................................................................................................................................................................18120.081000000000010000000000000000000000000000000000000000000000000000
...AAAAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.25120.081000000000100000000000000000000000000000000000000000000000000000
...AAAAATGACTGGTC---GTG----------------------------------GTAA................................................................................................................................................................................................................................................................................................................21120.081000000000000000000000000001000000000000000000000000000000000000
...AAAAATGACTGGTC---GTG----------------------------------GT..................................................................................................................................................................................................................................................................................................................19120.081000000000001000000000000000000000000000000000000000000000000000
....AAAATGACTGGTC---GTG----------------------------------GTAAAG..............................................................................................................................................................................................................................................................................................................22120.081001000000000000000000000000000000000000000000000000000000000000
GTGAAAAATGACTGGTC---GTG----------------------------------GTAAA...............................................................................................................................................................................................................................................................................................................25120.081000000010000000000000000000000000000000000000000000000000000000
.....AAATGACTGGTC---GTG----------------------------------GTAA................................................................................................................................................................................................................................................................................................................19120.081000000000000000000000000000000000001000000000000000000000000000
.TGAAAAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.27120.081000000000000000000000000000100000000000000000000000000000000000
...AAAAATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..24120.081000000000000000000000000000000100000000000000000000000000000000
............TGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..15200.051000000000000000000000000000000000000000000000000000000010000000
........TGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG21200.051000000000000010000000000000000000000000000000000000000000000000
.......ATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG22200.051000000001000000000000000000000000000000000000000000000000000000
........TGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.20200.051000000000000000000000000000000000000000000000000000000000000001
........TGACTGGTC---GTG----------------------------------GTAAAG..............................................................................................................................................................................................................................................................................................................18200.051000000000000000000000001000000000000000000000000000000000000000
......AATGACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..21200.051000000000000000000000000000001000000000000000000000000000000000
......AATGACTGGTC---GTG----------------------------------GTAAA...............................................................................................................................................................................................................................................................................................................19200.051000000000000010000000000000000000000000000000000000000000000000
..........ACTGGTC---GTG----------------------------------GTAAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G.18200.051000000000000000000000001000000000000000000000000000000000000000
droMoj3
T--------------------------------AGAGGTGGAGAACTATCGATATTGGACGCTCTCGATTTTTGGT-GATTGTTTATTTTGAACCATCGATATTG-TCGATGGTGTCATCGACAGTATCGATAGCGCCATCGAAA---GTGTAC---C-CCAA-CAGCC-AAA---TA-----TAT------------------------------------TTGAATTGAATATAAGATATA--TATATTGTTTATTTG--A-------TCCA----------------AAAGTTACGATTTAAAAATAAAAGAATGTTAATGTTTTTTTCTTTGAGTCGTGTTCGCCTCTCTGAAATAATTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................GAGAACTATCGATATTGGACG................................................................................................................................................................................................................................................................................................................2120.501100000
droGri2
AACAA---TGTCTGGTC---GTG--------GTAAAGGTGGAAAAGTA----------------------------------------------------------------------------------------------------------------------AAGGGAAAGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...AA---TGTCTGGTC---GTG--------GTAAAGGTG.....................................................................................................................................................................................................................................................................................................................................23200.05110
.........................................AAAAGTA----------------------------------------------------------------------------------------------------------------------AAGGGAAAGGC............................................................................................................................................................................................18200.05110
....A---TGTCTGGTC---GTG--------GTAAAGGTGGA...................................................................................................................................................................................................................................................................................................................................24200.05110
.........GTCTGGTC---GTG--------GTAAAGG.......................................................................................................................................................................................................................................................................................................................................18200.05110
.....................................GTGGAAAAGTA----------------------------------------------------------------------------------------------------------------------AAGGGAAAGGC............................................................................................................................................................................................22200.05101

Generated: 05/18/2015 at 07:32 AM