ID:

dan_3398

Coordinate:

scaffold_738:3665-3815 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.5 -13.74 -13.7

Flybase annnotation

exon [dana_GLEANR_14191:1]; CDS [Dana\GF13925-cds]; intron [Dana\GF13925-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. dan_3398  scaffold_738:3727-3751 +
  2. scaffold_1879:524-548 +
  3. scaffold_8797:2481-2505 +
  4. scaffold_8994:3218-3242 +
  5. scaffold_12911:818858-818882 +
  6. scaffold_13034:1053309-1053333 +
  7. scaffold_13045:732022-732046 +
  8. scaffold_13077:82914-82938 +
  9. scaffold_13099:820218-820242 +
  10. scaffold_13099:1666142-1666166 +
  11. scaffold_13099:2396985-2397009 +
  12. scaffold_13168:3304-3328 +
  13. scaffold_13174:50-74 +
  14. scaffold_13230:151017-151041 +
  15. scaffold_13230:152001-152025 +
  16. scaffold_13230:1699479-1699503 +
  17. scaffold_13230:3201945-3201969 +
  18. scaffold_13307:1112-1136 +
  19. scaffold_13339:3231042-3231066 +
  20. scaffold_13438:5359-5383 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTCGGTCGCTCCGCAGCATCAAGCGTTGAGCCGCGCTCCCATCACATATGTAAGTATATCATTTGTAGAAACGCCAAAATAATTAAATAAATTATATCATCAATATCAATATCTATAAATCGAACTGTGCTTGTTTTTATTAAAGCCAATATTTAGAACACAAAAATAAAGCTACCGAAAACGCTCAGTAACTTAACATTTGATTACCCAGTATCTGTTGACATACATACATACGCTGGTTGCAGAGTGC
**************************************************.(((((...(((((((((((..........................................))))))))).))((((.((..((((((.....(((...(((((.........)))))..)))...)))))))).)))).))))).....**************************************************
Read size # Mismatch Hit Count Total Norm Total M058
embryo
V039
embryo
M044
female body
V105
male body
................................................................................................................................................................................................................................TACATACATACGCTGGTTGCAGAGT.. 25 0 5 1.00 5 1 2 0 2
............................................................................................................................................................................................................................GACATACAGACATACGCTGGTTGCAGAG... 28 1 4 0.25 1 0 0 1 0
..................................................................................................................................................................................................................................CATACATACGCTGGTTGCAGAGTGC 25 0 4 0.25 1 1 0 0 0
............................................................................................................................................................................................................................GACATACATACATACGCTGGTTGCAGAG... 28 0 4 0.25 1 0 0 1 0
............................................................................................................................................................................................................................GACATACATACATACGCTGGTTGC....... 24 0 4 0.25 1 1 0 0 0
................................................................................................................................................................................................................................TACATAGATACGCTGGATGCAGCGTGC 27 3 5 0.20 1 0 1 0 0
................................................................................................................................................................................................................................TACATACATACGCCGGTCACAGAGT.. 25 3 12 0.08 1 0 1 0 0
.................................................................GTGGTAACACCAAAATAATTA..................................................................................................................................................................... 21 3 20 0.05 1 0 1 0 0
......................................................................................................................................................................................................................TCTGTTGACATACATACATA................. 20 0 20 0.05 1 0 0 1 0
................................................................................................................TCTATAAATCGAACTGTGCTTGTTT.................................................................................................................. 25 0 20 0.05 1 1 0 0 0
TCTCGGTCGCTCCGCAGCATCAAGC.................................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0
..........................................................................................................................................................GAGAACACAAAAATAAAGCTACCG......................................................................... 24 1 20 0.05 1 0 0 1 0
............CGCAGCATCAAGCGTTGAGC........................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
...............AGCATCAAGCGTTGAGCCGCG....................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

AGAGCCAGCGAGGCGTCGTAGTTCGCAACTCGGCGCGAGGGTAGTGTATACATTCATATAGTAAACATCTTTGCGGTTTTATTAATTTATTTAATATAGTAGTTATAGTTATAGATATTTAGCTTGACACGAACAAAAATAATTTCGGTTATAAATCTTGTGTTTTTATTTCGATGGCTTTTGCGAGTCATTGAATTGTAAACTAATGGGTCATAGACAACTGTATGTATGTATGCGACCAACGTCTCACG
**************************************************.(((((...(((((((((((..........................................))))))))).))((((.((..((((((.....(((...(((((.........)))))..)))...)))))))).)))).))))).....**************************************************
Read size # Mismatch Hit Count Total Norm Total M044
female body
V055
head
V106
head
V039
embryo
M058
embryo
...GCCAGCGAGGCGTCGTAGTTCGCAACT............................................................................................................................................................................................................................. 27 0 20 0.90 18 18 0 0 0 0
................................................................................................................................................................................................GAATTGTGAACTAATGGGAGAT..................................... 22 3 2 0.50 1 0 1 0 0 0
......................................................................................TTATTTAATATAGTAGTAA.................................................................................................................................................. 19 1 3 0.33 1 0 0 1 0 0
...................................................................................................................................................................................................................CATAGACAACAGTATGCATGGA.................. 22 3 3 0.33 1 0 1 0 0 0
.......................................................................................TATTTAATATAGTAGTAA.................................................................................................................................................. 18 1 5 0.20 1 0 0 0 1 0
..........................GACTGGGCGCGAGGGTA................................................................................................................................................................................................................ 17 2 8 0.13 1 0 1 0 0 0
AGAGCCAGCGAGGCGTCGTAGTT.................................................................................................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
...............................................................................................................TAGATATTTAGCTTGACACGAACAA................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
....CCAGCGAGGCGTCGTAGTTCGCATCT............................................................................................................................................................................................................................. 26 1 20 0.05 1 0 0 0 0 1
..AGCCAGCGAGGCGTCGTAGATCGCAACT............................................................................................................................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0
.GAGCCAGCGAGGCGTCGTAGTTCGCA................................................................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_738:3615-3865 + dan_3398 TCTCGGTCGCTCCGCAGCATCAAGCGTTGAGCCGCGCTCCCATCACATATGTAAGTATATCATTTGTAGAAACGCCAAAATAAT------------------TA---AATAAATTATA---------------------------------------------------------------------------------------------------------TCATCAATATCAATATCTATAAA--------------------TCGAACTGTGCTTGTTTT---------------TA--TTAAAGCCAATATTTAGAACACAAAAATAAAGCTA-CCGAAAACGCTCAGTAACTTAACATTTGATTACCCAGT-----------------------ATCTGTTGACATACATACATACGCTGGTTGCAGAGTGC
droBip1 scf7180000393335:3368-3598 - TCACAGTCGCTCCGCAGCATCAAGCGTTGAACCA------------------------------------------------------------------------------T---TGTTACTTTGCCGCTTGGTCTTCAACCCTTCAGACTATAA--------------------TTTTCATTTATCTCCCAGAACTTCAAAATAAAATCAGATTCAA----TAAATTCACTCCCC--------------------ATATCAAAATCGAACAGAAATTTTATT---------------AA--TTAAAAAGGAAATTCTGAACACTA-ATTGCACCTACCCGAAAACGGTCGGTAGCTTAACATTTGGTGAACC----------------------------------------------------------------
droKik1 scf7180000301006:13108-13146 - A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTA-TTGAAAAAGCTCAGTAACTCAACAT-TGGTGACCC----------------------------------------------------------------
droFic1 scf7180000451737:14216-14333 + ATAA-CTCATTTCGT-------------------------------------------------CGAAATAAAATC------------------GCTGCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------CGCATAAATCGAACTCAAAATTC---TTGTTAATTTTTT--AA--TTCA------------------------ACAGCTA-ACAAAAAAGCTTATTAGCTCAACATTTGGTGACCC----------------------------------------------------------------
droRho1 scf7180000776215:427-564 - ATTT-----------------------------------------------TATTTATAGTAACTAAAGTAAACCCTAAAAAATTAAATA----GTTGCGC--------------------------------------------------------------------------------------------------------------AAAATTTT----TTTATAGTATGTAT--------------------ATACTTAAATTAAACTAAATTTTTTTT---------------TA--TTCAA----------------------------------AAAAAACGCAAAAACCCCAAAAAAAAAAATAA----------------------------------------------------------------
droTak1 scf7180000414620:4962-5046 - AAAT-----------------------------------------------AAC------------------------------------------------TT---TAACGGTCAAA---------------------------------------------------------------------------------------------------------TCATAAATGTTAAAAACTATAAAATTAATTGTGTGTATTGC-----------------------------------CA--T------------------------------------------------GAAATCAGACAT-TTTTAACAC----------------------------------------------------------------
dm3 chr2L:22632222-22632288 + A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTA-TTGAAAAAGCTCAGTAGCTAAACAT-TGGTGACCCCGACGTGATAGTGTTAAT--------------TTGCATGCAT----------------------
droSim2 2r:2446054-2446121 + A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTA-TTGAAAAAGCTCAATAGCTAAACATTTGGTGACCCCGACGTAATTTTGTTAAT--------------TTGCATGCAT----------------------
droSec2 scaffold_87:98810-98959 - TTAAA--CAATTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAA------------------------------------AAAC----------TGTCGTCATAAAA--------------------ACAAACT-----TTCTTC----G-GTTTTTTATTATTCGCA------------------------ACAGCTA-TTGAAAAAGCTCAATAGCTAAACATTTGGTGACCCCGACGTGATCGTGTTAAT--------------TTGAATGCAT----TAATTA------ATGCAC
droYak3 v2_chrUn_610:20052-20192 - CGCC-----------------------------------------------AAA-------------------------ACTGT---GCAGTATACTAA---TTTTATACTCC---TAATATT----AATATACTCTTATACTCTTAATATTGTAA--------------------TAGTCATTAATA----------------------------------------------GC-----------------------------------------------------A-GTTGC---TATTCGCA------------------------ACAGCTA-TTGAAAAAGCTCAATAGCTAAACATTTGGTGACCC----------------------------------------------------------------
dp5 Unknown_group_148:19615-19678 - TTTCATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCA--AAATTGCA------------------------ACAGTTA-TTAAAAACGCTTAATAGCTTAACATTTGGTGACCC----------------------------------------------------------------
droPer2 scaffold_151:52989-53147 + GCAT-----------------------------------------------CAA------------------------------------------------TC---GTTCGCCCCAATCATC----CCCATATGTACATACGCGATAAGTTGGTTTACATATACAAATAAATTGTGAATTAT------------------------------------AAAC----------AGCC-----------------------------------TCTCGAATT---TCATTA-ACTTC---AATTTGCA------------------------ACAGTTG-TTAAAAACGCTTAATAGCTTAACATTTGGTGACCC----------------------------------------------------------------
droWil2 scf2_1100000004517:39350-39423 + ATGT-----------------------------------------------AAA-TATA---GTGGTAGAAATTCC------------------AATAATCTTA---GACAAATAATA---------------------------------------------------------------------------------------------------------TAAGAAATTTTAATATATACAAA--------------------T-------------------------------------------------------------------------------------------------------CTAA----------------------------------------------------------------
droVir3 scaffold_12872:43838-43910 - AAAT-----------------------------------------------GTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTTC----T-ATGTTTA--GGTTCTAA------------------------ACAGTTG-CCAAAAAACATTAGTAACTCAACATTTGAACGCCC----------------------------------------------------------------
droMoj3 scaffold_6468:33221-33322 - TAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTATTCGAAAAATCTCGATAGCTCAACATTTGATGACCCCGACGTGATCTCTTTCGTTTCTTTCTACATATTTGCATATATATATATATTGACAGCA------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCTCGGTCGCTCCGCAGCATCAAGCGTTGAGCCGCGCTCCCATCACATATGTAAGTATATCATTTGTAGAAACGCCAAAATAAT------------------TA---AATAAATTATA---------------------------------------------------------------------------------------------------------TCATCAATATCAATATCTATAAA--------------------TCGAACTGTGCTTGTTTT---------------TA--TTAAAGCCAATATTTAGAACACAAAAATAAAGCTA-CCGAAAACGCTCAGTAACTTAACATTTGATTACCCAGT-----------------------ATCTGTTGACATACATACATACGCTGGTTGCAGAGTGCSizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................TACATACATACGCTGGTTGCAGAGT..2551.005012020
.............................................................................................................................................................................................................................................................................................................................................................................................................................CATACATACGCTGGTTGCAGAGTGC2540.251010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GACATACATACATACGCTGGTTGCAGAG...2840.251100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GACATACATACATACGCTGGTTGC.......2440.251010000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTGACATACATACATA.................20200.051100000
..............................................................................................................................................................................................................................................TCTATAAA--------------------TCGAACTGTGCTTGTTT...........................................................................................................................................................25200.051010000
TCTCGGTCGCTCCGCAGCATCAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
............CGCAGCATCAAGCGTTGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...............AGCATCAAGCGTTGAGCCGCG..................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droBip1
TCACAGTCGCTCCGCAGCATCAAGCGTTGAACCA------------------------------------------------------------------------------T---TGTTACTTTGCCGCTTGGTCTTCAACCCTTCAGACTATAA--------------------TTTTCATTTATCTCCCAGAACTTCAAAATAAAATCAGATTCAA----TAAATTCACTCCCC--------------------ATATCAAAATCGAACAGAAATTTTATT---------------AA--TTAAAAAGGAAATTCTGAACACTA-ATTGCACCTACCCGAAAACGGTCGGTAGCTTAACATTTGGTGAACC----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTA-TTGAAAAAGCTCAGTAACTCAACAT-TGGTGACCC----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATAA-CTCATTTCGT-------------------------------------------------CGAAATAAAATC------------------GCTGCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------CGCATAAATCGAACTCAAAATTC---TTGTTAATTTTTT--AA--TTCA------------------------ACAGCTA-ACAAAAAAGCTTATTAGCTCAACATTTGGTGACCC----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATTT-----------------------------------------------TATTTATAGTAACTAAAGTAAACCCTAAAAAATTAAATA----GTTGCGC--------------------------------------------------------------------------------------------------------------AAAATTTT----TTTATAGTATGTAT--------------------ATACTTAAATTAAACTAAATTTTTTTT---------------TA--TTCAA----------------------------------AAAAAACGCAAAAACCCCAAAAAAAAAAATAA----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAAT-----------------------------------------------AAC------------------------------------------------TT---TAACGGTCAAA---------------------------------------------------------------------------------------------------------TCATAAATGTTAAAAACTATAAAATTAATTGTGTGTATTGC-----------------------------------CA--T------------------------------------------------GAAATCAGACAT-TTTTAACAC----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTA-TTGAAAAAGCTCAGTAGCTAAACAT-TGGTGACCCCGACGTGATAGTGTTAAT--------------TTGCATGCAT----------------------SizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................TGGTGACCCCGACGTGAT.......................................................182011.10222000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000005140710000000710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000030000900000010000000000000000000000000000000000000180000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AAAGCTCAGTAGCTAAACAT-TGGTG....................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AAAGCTCAGTAGCTAAACAT-TGGTGA...................................................................2616.0060000000000000000000000000000000000000000010000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................T-TGGTGACCCCGACGTGATAGTGT..................................................24163.385400000000000000000000000000000000000000001000000000000000000000000000000000000000002000000000000010000000000000000000000000000000000000000000000210000001000000000000000000000000000000000000000014000140000000030134000000100001110000000000000000000000000000000000000000000000000000000000001000001100000000100000000000000001322000000
........................................................................................................................................................................................................................................................................................................................................................AAAGCTCAGTAGCTAAACAT-TGGTGAC..................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AAGCTCAGTAGCTAAACAT-TGGTGA...................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CCCGACGTGATAGTGTTAAT--------------TTGCA...........................25162.00320000000000000000000000000000000000001000000010000000100000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000030100000000000000000000000000000000000000002000000000030100000000040005240000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000101000000
....................................................................................................................................................................................................................................................................................................................................................................................CCCGACGTGATAGTGTTAAT--------------TTGCATG.........................27141.79250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000130000000000000000000000000000000000000000101000000000000000000000010207220000000000000000000000000000000000000000000000000000000000000000000002000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................T-TGGTGACCCCGACGTGATAGTGTT.................................................25161.63260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101100000000000020126000100120003100000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................CCCCGACGTGATAGTGTTAAT--------------TTGCA...........................26161.63260000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000100000000000000000000000000000000000000050000000000000000000000000000000000000003000000000000010010000000010014070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ACAT-TGGTGACCCCGACGTGATAGTGT..................................................27141.57220000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000001100101000000000000100000000120000200000000000000000000000000000000000000000000000000000000000000000000000000000601000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGATAGTGTTAAT--------------TTGCATGCAT----------------------23161.56250000000000000000000000000000000000000000010010000000000001010000000000000000000000000000000000000000000000000000000000000000000000000020000000100000000000000000000000000000000000000000000000400003000000002000000000100010001010000000000000000000000000000000000000000000000000000000000000000000000000000302000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TAAACAT-TGGTGACCCCGACGTGATAGTG...................................................29161.502400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000031118000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTA-TTGAAAAAGCTCAATAGCTAAACATTTGGTGACCCCGACGTAATTTTGTTAAT--------------TTGCATGCAT----------------------SizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
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................................................................................................................................................................................................................................................................................................................................................................................TGACCCCGACGTAATTTTGTTAAT--------------TT..............................2611.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................CATTTGGTGACCCCGACGTAATT......................................................2311.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................TGAAAAAGCTCAATA...................................................................................15200.9018000000000018000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTAAACATTTGGTGACCCCGACG...........................................................26160.881400010034312000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCCGACG...........................................................29140.861200000025320000000
.................................................................................................................................................................................................................................................................................................................................................A-TTGAAAAAGCTCAATAGCTAAACA...........................................................................25200.7515000000000000015000
.................................................................................................................................................................................................................................................................................................................................................A-TTGAAAAAGCTCAATAGCTAAACATT.........................................................................27200.6012000000000000120000
.............................................................................................................................................................................................................................................................................................................................................................................TGGTGACCCCGACGT..........................................................15200.6012000000000012000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCCGAC............................................................28140.57800000052010000000
.............................................................................................................................................................................................................................................................................................................................................................................TGGTGACCCCGACGTA.........................................................1620.50100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................TTTGGTGACCCCGACGTA.........................................................1820.50100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................AAAAGCTCAATAGCTAAACATTTGG......................................................................25200.45900000004320000000
....................................................................................................................................................................................................................................................................................................................................................TGAAAAAGCTCAATAGCTAAACATT.........................................................................25200.40800070000010000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTAAACATTTGGTGACCCCGACGT..........................................................27160.38600000011310000000
....................................................................................................................................................................................................................................................................................................................................................TGAAAAAGCTCAATAGCTAAACATTTGG......................................................................28200.35700020012200000000
........................................................................................................................................................................................................................................................................................................................................................AAAGCTCAATAGCTAAACATTTGGTGA...................................................................27150.33500000030200000000
....................................................................................................................................................................................................................................................................................................................................................TGAAAAAGCTCAATAGCTAAC.............................................................................21200.30600006000000000000
............................................................................................................................................................................................................................................................................................................................................................................TTGGTGACCCCGACGT..........................................................16200.30600000020004000000
.....................................................................................................................................................................................................................................................................................................................................................................TAAACATTTGGTGACCCCGA.............................................................20200.30600000022020000000
....................................................................................................................................................................................................................................................................................................................................................TGAAAAAGCTCAATAGCTAAACAT..........................................................................24200.30600000000006000000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGGTGACCCCG..............................................................27140.29400000020110000000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGGTGACCCCGG.............................................................28140.29400000011200000000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGGTGA...................................................................22180.28500000011210000000
................................................................................................................................................................................................................................................................................................................................................................ATAGCTAAACATTTGGTGACCCCGACG...........................................................27150.27400000000031000000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGGTGACCCCGACT...........................................................30140.21300000020100000000
................................................................................................................................................................................................................................................................................................................................................TA-TTGAAAAAGCTCAAT....................................................................................17200.20400000000004000000
................................................................................................................................................................................................................................................................................................................................................TA-TTGAAAAAGCTCAATAGCTAAACATT.........................................................................28200.20400000000010030000
.................................................................................................................................................................................................................................................................................................................................................A-TTGAAAAAGCTCAATAGCTAAA.............................................................................23200.20400000000000040000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTAAACATTTGGTGACCCCGAA............................................................25160.19300000010200000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTAAACATTTGGTGACCCCGACGA..........................................................27160.19300000000300000000
...................................................................................................................................................................................................................................................................................................................................................................GCTAAACATTTGGTGACCCCGA.............................................................22190.16300000001110000000
............................................................................................................................................................................................................................................................................................................................................................................TTGGTGACCCCGACG...........................................................15200.15300000000003000000
...................................................................................................................................................................................................................................................................................................................................................TTGAAAAAGCTCAATAGCTAAACATT.........................................................................26200.15300000000002010000
.....................................................................................................................................................................................................................................................................................................................................................GAAAAAGCTCAATAGCTAAACATTTGG......................................................................27200.15300000000111000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATT.........................................................................15200.15300000000003000000
...............................................................................................................................................................................................................................................................................................................................................CTA-TTGAAAAAGCTCAAT....................................................................................18200.15300000000003000000
........................................................................................................................................................................................................................................................................................................................................................................ACATTTGGTGACCCCGACGT..........................................................20200.15300000001011000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCC...............................................................25140.14200000001010000000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGGTGACCCCGACGT..........................................................31140.14200000010100000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCCGAA............................................................28140.14200000011000000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCCG..............................................................26140.14200000010100000000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGGTGACCCCGTA............................................................29140.14200000000200000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTAAACATTTGGTGACCCCGTA............................................................25160.13200000010100000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTAAACATTTGGTGACCCCGAC............................................................25160.13200000001010000000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGGTGACCC................................................................25160.13200000001010000000
..................................................................................................................................................................................................................................................................................................................................................................AGCTAAACATTTGGTGACCCCGA.............................................................23170.12200000000020000000
........................................................................................................................................................................................................................................................................................................................................................AAAGCTCAATAGCTAAACATTTGGT.....................................................................25200.10200000010100000000
........................................................................................................................................................................................................................................................................................................................................................................ACATTTGGTGACCCCGA.............................................................17200.10200000002000000000
............................................................................................................................................................................................................................................................................................................................................................CTCAATAGCTAAACATT.........................................................................17200.10200000000002000000
................................................................................................................................................................................................................................................................................................................................................TA-TTGAAAAAGCTCAATAGCTAAAA............................................................................25200.10200000000000020000
..........................................................................................................................................................................................................................................................................................................................................................................ATTTGGTGACCCCGACG...........................................................17200.10200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGG......................................................................19200.10200000000010100000
.........................................................................................................................................................................................................................................................................................................................................................................CATTTGGTGACCCCGACGT..........................................................19200.10200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................TTTGGTGACCCCGACGT..........................................................17200.10200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGGTGACCCCGTT............................................................29140.07100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCCTTA............................................................28140.07100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCCGT.............................................................27140.07100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCCGAT............................................................28140.07100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................AGCTCAATAGCTAAACATTTGGTGACCC................................................................28140.07100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCCCGA............................................................28140.07100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................GCTCAATAGCTAAACATTTGGTGACCCCGAA............................................................31140.07100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCCGACGT..........................................................30140.07100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGACCCCGACGA..........................................................30140.07100000010000000000
................................................................................................................................................................................................................................................................................................................................................................ATAGCTAAACATTTGGTGACCCCGACGT..........................................................28150.07100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................AATAGCTAAACATTTGGTGACCCCGAA............................................................27150.07100000001000000000
................................................................................................................................................................................................................................................................................................................................................................ATAGCTAAACATTTGGTGACCCCGACGTT.........................................................29150.07100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTAAACATTTGGTGACCCCGACT...........................................................26160.06100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTAAACATTTGGTGACCCCGTT............................................................25160.06100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTAAACATTTGGTGACCCCGC.............................................................24160.06100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGGTGACC.................................................................24170.06100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................CAATAGCTAAACATTTGGTGA...................................................................21180.06100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................GCTAAACATTTGGTGACCCCGACGTTT........................................................27180.06100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................GCTAAACATTTGGTGACCCCGACG...........................................................24190.05100000000010000000
.................................................................................................................................................................................................................................................................................................................................................A-TTGAAAAAGCTCAATAGCTAA..............................................................................22200.05100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTT........................................................................17200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................AAAAGCTCAATAGCTAAACATT.........................................................................22200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................TAAACATTTGGTGACCCCGACG...........................................................22200.05100000000100000000
................................................................................................................................................................................................................................................................................................................................................TA-TTGAAAAAGCTCAATAG..................................................................................19200.05100000000001000000
....................................................................................................................................................................................................................................................................................................................................................TGAAAAAGCTCAATAGCTAAACATTTGGT.....................................................................29200.05100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................GAAAAAGCTCAATAGCTAAACATTC........................................................................25200.05100001000000000000
....................................................................................................................................................................................................................................................................................................................................................TGAAAAAGCTCAATAGCTAAACATTTGGTA....................................................................30200.05100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................GCTCAATAGCTAAACATTT........................................................................19200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................CTA-TTGAAAAAGCTCAATAGCTAAACATT.........................................................................29200.05100010000000000000
......................................................................................................................................................................................................................................................................................................................................................AAAAAGCTCAATAGCTAAACATTTGGT.....................................................................27200.05100000000010000000
...................................................................................................................................................................................................................................................................................................................................................TTGAAAAAGCTCAATAGCTAA..............................................................................21200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................TA-TTGAAAAAGCTCAATAGCTAAACAT..........................................................................27200.05100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................AGCTCAATAGCTAAACATTTGGT.....................................................................23200.05100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTAAACATTTGGTA....................................................................17200.05100000000010000000
...................................................................................................................................................................................................................................................................................................................................................TTGAAAAAGCTCAATAGCTAAACATTT........................................................................27200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................AAACATTTGGTGACCCCGA.............................................................19200.05100000010000000000
................................................................................................................................................................................................................................................................................................................................................TA-TTGAAAAAGCTCAATAGCTA...............................................................................22200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................TA-TTGAAAAAGCTCAATAGCTAAACA...........................................................................26200.05100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CATTTGGTGACCCCGA.............................................................16200.05100000001000000000
........................................................................................................................................................................................................................................................................................................................................................AAAGCTCAATAGCTAAACA...........................................................................19200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................AACATTTGGTGACCCCGACGT..........................................................21200.05100000000010000000
................................................................................................................................................................................................................................................................................................................................................................ATAGCTAAACATTTGGT.....................................................................17200.05100000000100000000
droSec2
TTAAA--CAATTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAA------------------------------------AAAC----------TGTCGTCATAAAA--------------------ACAAACT-----TTCTTC----G-GTTTTTTATTATTCGCA------------------------ACAGCTA-TTGAAAAAGCTCAATAGCTAAACATTTGGTGACCCCGACGTGATCGTGTTAAT--------------TTGAATGCAT----TAATTA------ATGCACSizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................GACGTGATCGTGTTAAT--------------TTGAATG.........................2420.5011000
....A--CAATTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAA------------------------------------AAAC----------TGTCG........................................................................................................................................................................................................25200.2550050
...........................................................................................................................................................................................................................................................................................................................................................................TTTGGTGACCCCGACGTGATCGTGT..................................................25200.2040004
...........................................................................................................................................................................................................................................................................................................TATTCGCA------------------------ACAGCTA-TTGAAAAAGC.........................................................................................25200.1533000
................................................................................................................................................................................................................................................................................................................................................TA-TTGAAAAAGCTCAATAGCTAAACAT..........................................................................27200.1533000
................................................................................................................................................................................................................................................................................................................................................TA-TTGAAAAAGCTCAATAGCTAAACA...........................................................................26200.1530030
.......................................................................................................................................................................................................................................................................................................TTATTATTCGCA------------------------ACAGCTA-TTG................................................................................................22200.1022000
.......................................................................................................................................................................................................................................................................................TCTTC----G-GTTTTTTATTATTCGCA------------------------ACA........................................................................................................26200.0511000
.......CAATTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAA------------------------------------AAAC----------TGTCGTCA.....................................................................................................................................................................................................27200.0511000
............................................................................................................................................................................................................................................................................................................................................................................TTGGTGACCCCGACGTGATCGTGT..................................................24200.0510001
.............................................................................................................................................................................................................................................................................................................................................................TCAATAGCTAAACATTTGGTGACCCCGA.............................................................28200.0510010
........................................................................................................................................................................................................................................................................................................TATTATTCGCA------------------------ACAGCTA-TTG................................................................................................21200.0510010
.........ATTCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATAA------------------------------------AAAC----------TGTCGTCA.....................................................................................................................................................................................................25200.0511000
...........................................................................................................................................................................................................................................................................................................................................................................TTTGGTGACCCCGACGTGAT.......................................................20200.0510010
......................................................................................................................................................................................................................................................................................TTCTTC----G-GTTTTTTATTATTCGCA------------------------ACA........................................................................................................27200.0510010
droYak3
CGCC-----------------------------------------------AAA-------------------------ACTGT---GCAGTATACTAA---TTTTATACTCC---TAATATT----AATATACTCTTATACTCTTAATATTGTAA--------------------TAGTCATTAATA----------------------------------------------GC-----------------------------------------------------A-GTTGC---TATTCGCA------------------------ACAGCTA-TTGAAAAAGCTCAATAGCTAAACATTTGGTGACCC----------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
....................................................AA-------------------------ACTGT---GCAGTATACTAA---TTTTATAC........................................................................................................................................................................................................................................................................................................................................2750.40202000000000
.........................................................................................................................................................................................................................................................................................................................................................AAGCTCAATAGCTAAACATTTGG......................................................................23200.05101000000000
dp5
TTTCATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCA--AAATTGCA------------------------ACAGTTA-TTAAAAACGCTTAATAGCTTAACATTTGGTGACCC----------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................A--AAATTGCA------------------------ACAGTTA-TTAAAAACGC.........................................................................................2660.6740010000300
......TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCA--AAATTGCA------------------------ACAGTTA-TTA................................................................................................2630.3310000000010
.............................................................................................................................................................................................................................................................................................................................................................TTAATAGCTTAACATTTGGTGACCC----------------------------------------------------------------25140.2940301000000
.......................................................................................................................................................................................................................................................................................................................................................AAACGCTTAATAGCTTAACATTTGG......................................................................25180.1730000000030
..TCATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCA--AAATTGCA------------------------ACAGT......................................................................................................2560.1710100000000
..............................................................................................................................................................................................................................................................................................................................................................TAATAGCTTAACATTTGGTGACCC----------------------------------------------------------------24140.1420200000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTTAACATTTGGTGACCC----------------------------------------------------------------21160.1320200000000
...............................................................................................................................................................................................................................................................................................................TGCA------------------------ACAGTTA-TTAAAAACGCTTAA.....................................................................................25200.1020000000020
...........................................................................................................................................................................................................................................................................................................................................................GCTTAATAGCTTAACATTTGGTGACCC----------------------------------------------------------------27130.0810100000000
..............................................................................................................................................................................................................................................................................................................................................................TAATAGCTTAACATTTGGTGACC.................................................................23170.0610100000000
...............................................................................................................................................................................................................................................................................................................................................................AATAGCTTAACATTTGGTGAC..................................................................21170.0610100000000
........................................................................................................................................................................................................................................................................................................................................................AACGCTTAATAGCTTAACATTTGG......................................................................24180.0610000000010
............................................................................................................................................................................................................................................................................................................................................................CTTAATAGCTTAACATTTGGT.....................................................................21180.0610000001000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTTAACATTTGGTGAC..................................................................19190.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................TAGCTTAACATTTGGTGACC.................................................................20190.0510100000000
............................................................................................................................................................................................................................................................................................................AATTGCA------------------------ACAGTTA-TTAAAAACGC.........................................................................................24200.0510100000000
.............................................................................................................................................................................................................................................................................................................ATTGCA------------------------ACAGTTA-TTAAAAACGCTT.......................................................................................25200.0510000000100
droPer2
GCAT-----------------------------------------------CAA------------------------------------------------TC---GTTCGCCCCAATCATC----CCCATATGTACATACGCGATAAGTTGGTTTACATATACAAATAAATTGTGAATTAT------------------------------------AAAC----------AGCC-----------------------------------TCTCGAATT---TCATTA-ACTTC---AATTTGCA------------------------ACAGTTG-TTAAAAACGCTTAATAGCTTAACATTTGGTGACCC----------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
....................................................................................................................................................................................TAT------------------------------------AAAC----------AGCC-----------------------------------TCTCGAA...............................................................................................................................................................1830.331001000
.......................................................................................................................................TACATACGCGATAAGTTGGTTTAC.......................................................................................................................................................................................................................................................................................24200.102200000
.......................................................................................................................................................................................................................................................................................................................................................AAACGCTTAATAGCTTAACATTTGGTGAC..................................................................29200.102200000
.........................................................................................................................TC----CCCATATGTACATACGCGATAAGTT..............................................................................................................................................................................................................................................................................................27200.051010000
.........................................................................................................................TC----CCCATATGTACATACGCGAT...................................................................................................................................................................................................................................................................................................22200.051010000
.............................................................................................................................................................................TGTGAATTAT------------------------------------AAAC----------AGCC-----------------------------------TCTCGA................................................................................................................................................................24200.051010000
...................................................................................................................................TATGTACATACGCGATAAGTTGGT...........................................................................................................................................................................................................................................................................................24200.051010000
................................................................................................................................CCATATGTACATACGCGATAAGTTGGTT..........................................................................................................................................................................................................................................................................................28200.051010000
..........................................................................................................................................ATACGCGATAAGTTGGTTTACATA....................................................................................................................................................................................................................................................................................24200.051010000
.........................................................................................................................TC----CCCATATGTACATACGCGATA..................................................................................................................................................................................................................................................................................................23200.051010000
droWil2
ATGT-----------------------------------------------AAA-TATA---GTGGTAGAAATTCC------------------AATAATCTTA---GACAAATAATA---------------------------------------------------------------------------------------------------------TAAGAAATTTTAATATATACAAA--------------------T-------------------------------------------------------------------------------------------------------CTAA----------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
No Reads
droVir3
AAAT-----------------------------------------------GTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATTTC----T-ATGTTTA--GGTTCTAA------------------------ACAGTTG-CCAAAAAACATTAGTAACTCAACATTTGAACGCCC----------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................TA--GGTTCTAA------------------------ACAGTTG-C..................................................................................................18200.051000000000000000000000000000000000000010000000000000000000000000
droMoj3
TAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTATTCGAAAAATCTCGATAGCTCAACATTTGATGACCCCGACGTGATCTCTTTCGTTTCTTTCTACATATTTGCATATATATATATATTGACAGCA------SizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................ATTCGAAAAATCTCGATAGCTCA..............................................................................23200.051100000
TAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTATTCGAAAAATCTCGATAG..................................................................................26200.051100000
......................................................................................................................................................................................................................................................................................................................................................AAAAATCTCGATAGCTCAA.............................................................................19200.051100000

Generated: 05/18/2015 at 07:26 AM