ID:

dan_3382

 Coordinate:

scaffold_13767:1489208-1489358 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.5 -37.2 -37.2

Flybase annnotation

exon [dana_GLEANR_6634:1]; CDS [Dana\GF22675-cds]; intron [Dana\GF22675-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron+
mature
  1. scaffold_927:837-862 -
  2. scaffold_13002:10614-10639 -
  3. scaffold_13079:555675-555700 -
  4. scaffold_13079:601419-601444 -
  5. scaffold_13079:604969-604994 -
  6. scaffold_13079:608461-608486 -
  7. scaffold_13082:3055850-3055875 -
  8. scaffold_13089:254477-254502 -
  9. scaffold_13099:101646-101671 -
  10. scaffold_13099:104783-104808 -
  11. scaffold_13099:108801-108826 -
  12. scaffold_13230:2228486-2228511 -
  13. scaffold_13250:708726-708751 -
  14. scaffold_13499:907683-907708 -
  15. scaffold_13499:916664-916689 -
  16. scaffold_13512:954-979 -
  17. scaffold_13512:4496-4521 -
  18. scaffold_13512:9382-9407 -
  19. scaffold_13512:12921-12946 -
  20. dan_3382  scaffold_13767:1489305-1489330 -
star

Sense Strand Reads

------------######################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTCCCGCTAATAATGCTGAATCTGCTTCCGGTGCCATCGACTAGTGCCGGGTTAGTAGGTTGGATATTGGCTTATGCATATCGTTACATTATTAATAGGCTAGTAGGTCTGATGCTTGTATATTGTGAACTGCTGATGCATCTTAATTGGGAAGTAGGTCTTGGCCCTAGGTGCCAACAGGGTCGGAGATGTCTTCTTCACTGTTTTACACACTTTTGACCAAAATCATAATCCCCTCTGCAAGGGAATAA
**************************************************((((((((....(((((..((....))))))).(((((.(((..(((((((((.....)))..))))))))).))))).))))))))...........((((((...(((((((((((..((....)))))))).)))))..))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V039
embryo
 M058
embryo
 V055
head
 V106
head
 V105
male body
.................................................................................................................................................................................CAGCGTCCGAGATCTCTTCTTCAC.................................................. 24 3 2 0.50 1 0 1 0 0 0 0
....CGCTAATAATGCTGAATCTGCTTCCGG............................................................................................................................................................................................................................ 27 0 2 0.50 1 0 1 0 0 0 0
................TGAATCTGCTTCCGGTGCCATCGAC.................................................................................................................................................................................................................. 25 0 14 0.36 5 2 0 3 0 0 0
....................TCTGCTTCCGGTGCCATCGACTAGT.............................................................................................................................................................................................................. 25 0 20 0.20 4 4 0 0 0 0 0
...............................................................................................................................................................................................................................AATCATAATCCCTTCGGC.......... 18 2 6 0.17 1 0 0 0 0 1 0
...............................................................................................................................................................................AACACGGACGGAGAGGTCTT........................................................ 20 3 8 0.13 1 0 0 0 1 0 0
..........TAATGCTGAATCTGCTTCCGGGGCCA....................................................................................................................................................................................................................... 26 1 12 0.08 1 1 0 0 0 0 0
...................ATCTGCTTCCGGTGCCATCGACTAGT.............................................................................................................................................................................................................. 26 0 13 0.08 1 1 0 0 0 0 0
..........TAATGCTGAATCTGCTTCCGGTG.......................................................................................................................................................................................................................... 23 0 14 0.07 1 1 0 0 0 0 0
................AGAATCTGCTTCCGGTGCCATCGAC.................................................................................................................................................................................................................. 25 1 14 0.07 1 1 0 0 0 0 0
..........TAATGCTGAATCTGCTTCCGGTGCC........................................................................................................................................................................................................................ 25 0 14 0.07 1 1 0 0 0 0 0
..........TAATGCTAAATCTGCTTCCGGTACCAT...................................................................................................................................................................................................................... 27 2 14 0.07 1 0 0 1 0 0 0
.............TTCGGAATCTGCTTTCGGTGCCATCGAC.................................................................................................................................................................................................................. 28 3 15 0.07 1 0 0 1 0 0 0
.............TGCTGAATCTGCTTCCGGTGCC........................................................................................................................................................................................................................ 22 0 16 0.06 1 1 0 0 0 0 0
................TAAATCTGCTTCCGGTACCATCGAC.................................................................................................................................................................................................................. 25 2 17 0.06 1 0 0 1 0 0 0
..............................................................................TATCGTTACATTATTAATAGGCTAGT................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0 0
......................TGCTTCCGGTGCCATCGACTAGTG............................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
.........................TTCCGGTGCCATCGACTAGTG............................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................................................CACACTTTTGACCAAAATC........................ 19 0 20 0.05 1 0 0 1 0 0 0
................................GCCATCGACTAGTGCCGGGTTAGTAGG................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
.....................................CGACTAGTGCCGGGTTAGTAGG................................................................................................................................................................................................ 22 0 20 0.05 1 0 0 1 0 0 0
........................................................................................................................................................................................................CTGTCTTACACACTTATGT................................ 19 3 20 0.05 1 1 0 0 0 0 0
..............................................CCGGGTTAGTAGGTTGGATATTGG..................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................TTGGGCCTAGGTGCGAA.......................................................................... 17 2 20 0.05 1 0 0 0 1 0 0
...................................................TTGGTGGGTTGGATATTGGC.................................................................................................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 1
...............................................................................ATCGTTACATTATTAATAGGCTAGTAG................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0
.........................TTCAGGTGCCTTCGACTATTGCCGGGT....................................................................................................................................................................................................... 27 3 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................GAATCATAATCCCTTCGGC.......... 19 3 20 0.05 1 0 0 0 0 1 0
......................TGCTTCCGGTGCCATCGACTAG............................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
......................TGCTTCCGGTGCCATCGACT................................................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................ATGCCTTGGCCCTAGGAGCC............................................................................ 20 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

AAGGGCGATTATTACGACTTAGACGAAGGCCACGGTAGCTGATCACGGCCCAATCATCCAACCTATAACCGAATACGTATAGCAATGTAATAATTATCCGATCATCCAGACTACGAACATATAACACTTGACGACTACGTAGAATTAACCCTTCATCCAGAACCGGGATCCACGGTTGTCCCAGCCTCTACAGAAGAAGTGACAAAATGTGTGAAAACTGGTTTTAGTATTAGGGGAGACGTTCCCTTATT
**************************************************((((((((....(((((..((....))))))).(((((.(((..(((((((((.....)))..))))))))).))))).))))))))...........((((((...(((((((((((..((....)))))))).)))))..))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 V039
embryo
 V105
male body		 M044
female body
 V055
head
 V106
head
........................................................................................................................................................................................................GACAGAATGTGTGAATAC................................. 18 2 5 31.60 158 85 55 0 9 6 3
.......................................................................................................................................................................................................AGACAGAATGTGTGAATAC................................. 19 3 20 20.80 416 170 105 109 14 13 5
.........................................................................................................................................................................................................ACAGAATGTGTGAATACAGG.............................. 20 3 10 4.00 40 39 1 0 0 0 0
..........................................................................................................................................................................................................CAGAATGTGTGAATACAGG.............................. 19 3 20 1.90 38 38 0 0 0 0 0
........................................................................................................................................................................................................GACAGAATGTGTGAATACA................................ 19 3 20 1.50 30 14 3 5 3 3 2
..................................................................................................................................................................CCGGGATCCACGGTTGTCCCAGCCTCT.............................................................. 27 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................................................................................GACAGAATGTGTGAATACAGG.............................. 21 3 7 0.29 2 2 0 0 0 0 0
.......................................................................................................................................................................................................TGACAGAATGTGTGAATAC................................. 19 2 4 0.25 1 0 0 0 1 0 0
.......................................................................................................................................................................................................GGACAGAATGTGTGAATAC................................. 19 3 20 0.20 4 1 1 1 1 0 0
...........................................................................................................................................................TCCAGAACCGGGATCCACG............................................................................. 19 0 7 0.14 1 0 0 0 0 0 1
.......................................................................................................................................................................................................AGACAAAATGTGTGAATAC................................. 19 2 9 0.11 1 0 0 0 0 0 1
.......................................................................................................................................................................................................AGACAGAATGTGTGAACAC................................. 19 3 20 0.10 2 1 0 1 0 0 0
................................................................................................................................................................................................................GTGTGAAAACTGGTTTTAG........................ 19 0 20 0.10 2 0 0 0 0 0 2
..................................................................................................................................................................................................AAAAGGGACAGAATGTGTGAA.................................... 21 3 10 0.10 1 0 0 1 0 0 0
..................TTAGACGAAGGCCACGGTAGCTGATG............................................................................................................................................................................................................... 26 1 13 0.08 1 0 0 0 1 0 0
...............GACTTAGACGAAGGCCACGGTAGCT................................................................................................................................................................................................................... 25 0 14 0.07 1 0 1 0 0 0 0
............................................................................................................................................................................CGGTTATCCCATCCACTAC............................................................ 19 3 18 0.06 1 1 0 0 0 0 0
..................................GTAGCTGATCACGGCCCAATCATCCAA.............................................................................................................................................................................................. 27 0 20 0.05 1 0 0 0 1 0 0
..............................................................................................................................................................................................................ATGTGTGAAAACTGGTTTT.......................... 19 0 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................................................................GACAGAATGTGTGAATA.................................. 17 2 20 0.05 1 0 0 0 0 1 0
.....................................................................................................TCATCCAGACTACGAACATATAACACT........................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0
.........................................ATCACGGCCCAATCATCCAACCTAT......................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0
......................................................................................................................................................................................................TAGACAAAATGTGTGAATAC................................. 20 3 20 0.05 1 1 0 0 0 0 0
................................................CCCAATCATCCAACCTATAACCGAAT................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................................................................CCCAGCCTCTACAGAAGAAGTGAC................................................ 24 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................................TGTGAAAACTGGTTTTAGTAT..................... 21 0 20 0.05 1 0 0 1 0 0 0
................................CGGTAGCTGATCACGGCCCAATCATCCAA.............................................................................................................................................................................................. 29 0 20 0.05 1 0 0 0 1 0 0
.............................................................................................................................................................................................................AATGTGTGAAAACTGGTTTTA......................... 21 0 20 0.05 1 0 0 1 0 0 0
..........................................................................................................................................................................................................CAGAATGTGTGAATACTAG.............................. 19 3 20 0.05 1 1 0 0 0 0 0
.......................................AGATCACGGCCCAATCATCCAACCTA.......................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
............................................................................................ATTATCCGATCATCCAGACTACG........................................................................................................................................ 23 0 20 0.05 1 0 0 0 1 0 0
...........................................................................................................................................................................................CTACCGAAGAAGAGACAA.............................................. 18 2 20 0.05 1 0 0 0 0 1 0
.......................................TGATCACGGCCCAATCATCCAACCTA.......................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................................................GCCAGAATGTGTGAATAC................................. 18 3 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13767:1489158-1489408 - dan_3382 TTCCCGCTAATAATGCTGAATCTGCTTCCGGTGCCATCGACTAGTGCCGGGTTAGTAGGTTGGATATTGGCTTATGCATATCGTTACATTATTAATAGGCTAGTAGGTCTGATGCTT---------------------------------------------------------GTATATTGT----------------GAACTGCTGATGCATCTTAATTGGGAAGTA-GGTCTTGGCCCTAGG----------------------------TGCC-A---ACAGGGTCGGAGATGTCT-TCTTCACTGTTTTACACACTTTTGACCAAAATCATAATCCCCTCTGCAAGGGAA--TAA
droBip1 scf7180000393938:8091-8273 - TTT-----------------------------------------------------------------------TGTATGTTAGTATTTTTTTAAATGTAATGTAAATTTAATGTGTACATAGACGGACATGCTCA-----------------------TATTAACTCAGGAGG---------TGATCCTGATCAAGAA----------------------------------------TATATA----------------------------TACTTT---ATAGGGTCGGAGATGTCT-CCTTCACTGCGTTGCACACTTTTGGACAAAATTATAATACCCTCTGGAAGGGTA--TAA
droKik1 scf7180000297785:884-985 + CTG-----------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------TGATGCTGATTAAGAA-------------------------------------------ATA----------------------------TACTTT---ATAGGGTCGGAAATGTCT-CCTTCACTGCGTTGCAAACTTCTGACTGAAATTATAATACCC--TGCAAGGGTA--TAA
droFic1 scf7180000453927:592009-592157 + TCT-----------------------------------------------------------------------G-A-----------GCA------------------------TT------------------TTATATAGTTAAGTTCACATAGTATTTCGATTCGGATGG---------TGATGCTGATCAAGAG----------------------------------------TATATA----------------------------TACTTT---ATGGGGTCTGAGGTGTCT-CATTCACTGCGTTGCAAACTTCTGACTGAAATTATAATACC---TGCGAGGGTA--TAA
droEle1 scf7180000491324:14051-14188 + TAA-----------------------------------------------------------------------TT--------------GTTAAATAAATA-------AAATGTTT---------------------------------------------------------GTATATTGT----------------AAAATGTTG---TATTTTATATGTCAATTAATGTCT---------------------------------------------------TGTATTTAATGTCT-TGTTCACTGCATTGCAAACTTCTGACTGAAATTATAATACCCTCTGCAAGGGTA--TAA
droRho1 scf7180000774311:2772-2900 - ATG-----------------------------------------------------------------------CTTATGT------------------------------------------------------A-----------------------TATAAACTCAGGACG---------CGATCCTGATCAAGAA----------------------------------------TATGTA----------------------------TACTTT---ATAGGTTCGGAGATGTTT-CCTTCACGGCGTTGCACACTTTTGACCAAAATTATAATACCCTCTGCAAGGGTA--TAC
droBia1 scf7180000299194:1431-1583 + GGC-----------------------------------------------------------------------CGTACGA------------------------------------------------------T-----------------------T--------------ATATGGTAA----------------GAACTCCTGATGCACCA-----CGCCAT---------GG------------TAATCGAAGAATACAGTGATCAAAACTTTGACATGGGGTCGGAAACGTCT-CCTTCACTGCGTTGCAAACTTCTGACTGAAATAATTATACCCTCTGCAAGGGTA--TAA
droTak1 scf7180000415834:28921-29020 - TGG-----------------------------------------------------------------------AAA----------------------------------------------------------------------------------------------------------GCATTTTG---------------------------GCTGTAAAA-------------------------------------------------T-A---GTGGGGTCGGCAACGTCT-CCTTCACTGCGTTGCAATCTTCTGACTGAAATCATAATACCCTTTGCAAGGGTA--TAA
droEug1 scf7180000408984:484388-484476 - CCC-----------------------------------------------------------------------TAT----------------------------------------------------------------------------------------------------------TGATCCTG-------------------------------------------------------------------------------------------ATGGGGTCGGAAACGTCT-CCTTCACTGCGTTACAAACTTCTGACCAAAATTATAATTCCCTCTGCAAGGGTA--TAA
droYak3 2L:22030347-22030417 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGAAAATTTCT-TCTTCACTGCGTTACAAGCTTCTGACCAAAATCAATATTTTCTATGTAAGGGTA--TAA
dp5 XR_group8:9130854-9130933 - TGC-----------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTGGGGTCGCGGATGCTT-CCTTCGCGGCATTGAAAACATCCTAACAATATCAAAATACCCTCTTCAAGGGTA--TAT
droWil2 scf2_1100000004961:3862772-3862949 - TTC-----------------------------------------------------------------------CA------------CTATTTACTTGATAGAGAATTTGTTGT--------------------------------------------------------------------TTATACTGATTGC---AACTCACTGAAGG--TGCATGAGTCGATCAT------GCATCTAGATTCTAGAATGGCAAAA------------TAC--C---CTGGGGTCGGAAACGTCT-CCTTCTGTGCGTTACAAACATCTGACCAATTTTATAATACCCTCTGCAAGGGTA--TAA
droVir3 scaffold_12891:75278-75386 + CTG-----------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------TGATGCTGATTAAGAA----------------------------------------TATATA--------------------------TAGACTTT---ATGGGGTCGGAGATGTCT-CCTTCTATGCGTTACACATTTCACGACAAAATTATAATACCCTCTGCAAGGGTA--TAA
droGri2 scaffold_14906:10779273-10779383 - TGA-----------------------------------------------------------------------TA-------------------------------------------------------------------------------------------------G---------TGATGTTGGTCTAGAC----------------------------------------TTTATA----------------------------AACT-G---AAGGGGTCGCAGACGTTTTCTTTCAATGCGTTGCAAACTTTAAAACAAAATTAAAATACCTTCTGCAAGGGTACATAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TTCCCGCTAATAATGCTGAATCTGCTTCCGGTGCCATCGACTAGTGCCGGGTTAGTAGGTTGGATATTGGCTTATGCATATCGTTACATTATTAATAGGCTAGTAGGTCTGATGCTT---------------------------------------------------------GTATATTGT----------------GAACTGCTGATGCATCTTAATTGGGAAGTA-GGTCTTGGCCCTAGG----------------------------TGCC-A---ACAGGGTCGGAGATGTCT-TCTTCACTGTTTTACACACTTTTGACCAAAATCATAATCCCCTCTGCAAGGGAA--TAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....CGCTAATAATGCTGAATCTGCTTCCGG.........................................................................................................................................................................................................................................................................................................................................2720.501001000
................TGAATCTGCTTCCGGTGCCATCGAC...............................................................................................................................................................................................................................................................................................................................25140.365230000
....................TCTGCTTCCGGTGCCATCGACTAGT...........................................................................................................................................................................................................................................................................................................................25200.204400000
...................ATCTGCTTCCGGTGCCATCGACTAGT...........................................................................................................................................................................................................................................................................................................................26130.081100000
..........TAATGCTGAATCTGCTTCCGGTG.......................................................................................................................................................................................................................................................................................................................................23140.071100000
..........TAATGCTGAATCTGCTTCCGGTGCC.....................................................................................................................................................................................................................................................................................................................................25140.071100000
.............TGCTGAATCTGCTTCCGGTGCC.....................................................................................................................................................................................................................................................................................................................................22160.061100000
..............................................................................TATCGTTACATTATTAATAGGCTAGT................................................................................................................................................................................................................................................................26200.051010000
......................TGCTTCCGGTGCCATCGACTAGTG..........................................................................................................................................................................................................................................................................................................................24200.051100000
.........................TTCCGGTGCCATCGACTAGTG..........................................................................................................................................................................................................................................................................................................................21200.051100000
...........................................................................................................................................................................................................................................................................................................................CACACTTTTGACCAAAATC..........................19200.051010000
................................GCCATCGACTAGTGCCGGGTTAGTAGG.............................................................................................................................................................................................................................................................................................................27200.051100000
.....................................CGACTAGTGCCGGGTTAGTAGG.............................................................................................................................................................................................................................................................................................................22200.051010000
..............................................CCGGGTTAGTAGGTTGGATATTGG..................................................................................................................................................................................................................................................................................................24200.051100000
...............................................................................ATCGTTACATTATTAATAGGCTAGTAG..............................................................................................................................................................................................................................................................27200.051100000
......................TGCTTCCGGTGCCATCGACTAG............................................................................................................................................................................................................................................................................................................................22200.051100000
......................TGCTTCCGGTGCCATCGACT..............................................................................................................................................................................................................................................................................................................................20200.051100000
droBip1
TTT-----------------------------------------------------------------------TGTATGTTAGTATTTTTTTAAATGTAATGTAAATTTAATGTGTACATAGACGGACATGCTCA-----------------------TATTAACTCAGGAGG---------TGATCCTGATCAAGAA----------------------------------------TATATA----------------------------TACTTT---ATAGGGTCGGAGATGTCT-CCTTCACTGCGTTGCACACTTTTGGACAAAATTATAATACCCTCTGGAAGGGTA--TAASizeHit CountTotal NormTotal
No Reads
droKik1
CTG-----------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------TGATGCTGATTAAGAA-------------------------------------------ATA----------------------------TACTTT---ATAGGGTCGGAAATGTCT-CCTTCACTGCGTTGCAAACTTCTGACTGAAATTATAATACCC--TGCAAGGGTA--TAASizeHit CountTotal NormTotal
No Reads
droFic1
TCT-----------------------------------------------------------------------G-A-----------GCA------------------------TT------------------TTATATAGTTAAGTTCACATAGTATTTCGATTCGGATGG---------TGATGCTGATCAAGAG----------------------------------------TATATA----------------------------TACTTT---ATGGGGTCTGAGGTGTCT-CATTCACTGCGTTGCAAACTTCTGACTGAAATTATAATACC---TGCGAGGGTA--TAASizeHit CountTotal NormTotal
No Reads
droEle1
TAA-----------------------------------------------------------------------TT--------------GTTAAATAAATA-------AAATGTTT---------------------------------------------------------GTATATTGT----------------AAAATGTTG---TATTTTATATGTCAATTAATGTCT---------------------------------------------------TGTATTTAATGTCT-TGTTCACTGCATTGCAAACTTCTGACTGAAATTATAATACCCTCTGCAAGGGTA--TAASizeHit CountTotal NormTotal
No Reads
droRho1
ATG-----------------------------------------------------------------------CTTATGT------------------------------------------------------A-----------------------TATAAACTCAGGACG---------CGATCCTGATCAAGAA----------------------------------------TATGTA----------------------------TACTTT---ATAGGTTCGGAGATGTTT-CCTTCACGGCGTTGCACACTTTTGACCAAAATTATAATACCCTCTGCAAGGGTA--TACSizeHit CountTotal NormTotal
No Reads
droBia1
GGC-----------------------------------------------------------------------CGTACGA------------------------------------------------------T-----------------------T--------------ATATGGTAA----------------GAACTCCTGATGCACCA-----CGCCAT---------GG------------TAATCGAAGAATACAGTGATCAAAACTTTGACATGGGGTCGGAAACGTCT-CCTTCACTGCGTTGCAAACTTCTGACTGAAATAATTATACCCTCTGCAAGGGTA--TAASizeHit CountTotal NormTotal
No Reads
droTak1
TGG-----------------------------------------------------------------------AAA----------------------------------------------------------------------------------------------------------GCATTTTG---------------------------GCTGTAAAA-------------------------------------------------T-A---GTGGGGTCGGCAACGTCT-CCTTCACTGCGTTGCAATCTTCTGACTGAAATCATAATACCCTTTGCAAGGGTA--TAASizeHit CountTotal NormTotal
No Reads
droEug1
CCC-----------------------------------------------------------------------TAT----------------------------------------------------------------------------------------------------------TGATCCTG-------------------------------------------------------------------------------------------ATGGGGTCGGAAACGTCT-CCTTCACTGCGTTACAAACTTCTGACCAAAATTATAATTCCCTCTGCAAGGGTA--TAASizeHit CountTotal NormTotal
No Reads
droYak3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCGAAAATTTCT-TCTTCACTGCGTTACAAGCTTCTGACCAAAATCAATATTTTCTATGTAAGGGTA--TAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
dp5
TGC-----------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTGGGGTCGCGGATGCTT-CCTTCGCGGCATTGAAAACATCCTAACAATATCAAAATACCCTCTTCAAGGGTA--TATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droWil2
TTC-----------------------------------------------------------------------CA------------CTATTTACTTGATAGAGAATTTGTTGT--------------------------------------------------------------------TTATACTGATTGC---AACTCACTGAAGG--TGCATGAGTCGATCAT------GCATCTAGATTCTAGAATGGCAAAA------------TAC--C---CTGGGGTCGGAAACGTCT-CCTTCTGTGCGTTACAAACATCTGACCAATTTTATAATACCCTCTGCAAGGGTA--TAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................TCT-CCTTCTGTGCGTTACAAACATCT....................................26200.05100010
............................................................................................................................................................................................................................................................................................................................................TTATAATACCCTCTGCAAGGGT......22200.05101000
................................................................................................................................................................................................................................................................................................................................ATCTGACCAATTTTATAATACCCT................24200.05100010
droVir3
CTG-----------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------TGATGCTGATTAAGAA----------------------------------------TATATA--------------------------TAGACTTT---ATGGGGTCGGAGATGTCT-CCTTCTATGCGTTACACATTTCACGACAAAATTATAATACCCTCTGCAAGGGTA--TAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................TTACACATTTCACGACAAAA............................20200.5511000000000000000000000000008000000010100100000000000000000000000
................................................................................................................................................................................................TTAAGAA----------------------------------------TATATA--------------------------TAGACTTT---ATGGGG........................................................................2720.501000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TACACATTTCACGACAAAATTATAATAC...................28200.153003000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTACACATTTCACGACAAAATTATAATA....................28200.153000000000000000000000000000000002010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TATGCGTTACACATTTCACGACAAAAT...........................27200.153000000000000000000000000000003000000000000000000000000000000000
...................................................................................................................................................................................................................................................TA--------------------------TAGACTTT---ATGGGGTCGGAGATG...............................................................25140.142000000000000000000000000001000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTACACATTTCACGACAAA.............................19200.102000000000000000000000000000000200000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GTTACACATTTCACGACAAAATTATAA......................27200.102000000000000000000000000200000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TTT---ATGGGGTCGGAGATGTCT-CCTTC......................................................26200.102000000000000000000000000000001000000000100000000000000000000000
..........................................................................T------------------------------------------------------------------------------------------------------------TGATGCTGATTAAGAA----------------------------------------TATATA--------------------------T........................................................................................24200.102002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CTATGCGTTACACATTTCACGACAAAAT...........................28200.102000000000000000000000000000000010000010000000000000000000000000
................................................................................................................................................................................................................................................................................................................TCTATGCGTTACACATTTCACGACAAAAT...........................29200.102002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTCTATGCGTTACACATTTCACGACA...............................26200.102000000000000000000000000002000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TA--------------------------TAGACTTT---ATGGGGTCGGAGAT................................................................24140.071000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CTATGCGTTACACATTTCACGACA...............................24200.051001000000000000000000000000000000000000000000000000000000000000
CTG-----------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------TGATGCTGATTAAGAA----------------------------------------TATATA--------------------------.........................................................................................26200.051000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CACATTTCACGACAAAATTATAATACCC.................28200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TGGGGTCGGAGATGTCT-C..........................................................18200.051000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TGGGGTCGGAGATGTCT-CCT........................................................20200.051000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................CTTCTATGCGTTACACATTTC.....................................21200.051000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................ATGCGTTACACATTTCACGACAAAAT...........................26200.051000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................AAATTATAATACCCTCTGCAAG.........22200.051000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTACACATTTCACGACAAAATTATAA......................26200.051000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TT---ATGGGGTCGGAGATGTCT-CCTT.......................................................24200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TT---ATGGGGTCGGAGATGTC.............................................................19200.051000010000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TCTATGCGTTACACATTTCACGACAAA.............................27200.051000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................ACTTT---ATGGGGTCGGAGATGTCT-C..........................................................24200.051000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ACACATTTCACGACAAAA............................18200.051000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTCTATGCGTTACACATTTCACG..................................23200.051000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TCACGACAAAATTATAATACCCTCT..............25200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TATGCGTTACACATTTCACGACAAAA............................26200.051000000000000000000000000000000000010000000000000000000000000000
droGri2
TGA-----------------------------------------------------------------------TA-------------------------------------------------------------------------------------------------G---------TGATGTTGGTCTAGAC----------------------------------------TTTATA----------------------------AACT-G---AAGGGGTCGCAGACGTTTTCTTTCAATGCGTTGCAAACTTTAAAACAAAATTAAAATACCTTCTGCAAGGGTACATAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:21 AM