dan_3374

Name	Class	Family	Strand
DMCR1A	LINE	CR1	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGTTTGAAAAAACTGTGCAAAGAGATCGGCCATTTCCTGATCAGTGTTCGCATAAGAGTTCTCAAACAGCAGTGGGGGATGTATCTTTTCCTCTTAGGTTAGTGTTTACAAAGTTATAAAACTGCTGCGGATCCTGAGTAAACTGTATCCTGCAGCGGTTATACGGGGCTATTATCCCGTATATCTCTAGATCCTTATTAGAGCCCCCGATGAAATACCCTGTCGAAGGCCTTTTGGACAGGAATGCAGAC ********************************************************************************************************...............(((((((((((....((....))..)))).)))))))*******************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V039 embryo	M058 embryo	M044 female body	V106 head	V055 head	V105 male body
.............TGTGCAAAGAGATCGGCCATTTCCT.....................................................................................................................................................................................................................	25	0	3	0.67	2	2	0	0	0	0	0
.................CAAAGAGATCGGCCATTTCCTCAT..................................................................................................................................................................................................................	24	1	5	0.40	2	2	0	0	0	0	0
..............GTGCAAAGAGATCGGCCATTTCCTGA...................................................................................................................................................................................................................	26	0	3	0.33	1	1	0	0	0	0	0
..........AACTGTGCAAAGAGATCGGCCATTTC.......................................................................................................................................................................................................................	26	0	3	0.33	1	1	0	0	0	0	0
.....................................................................CAGTTTGGGATGTATCTTTTT.................................................................................................................................................................	21	3	10	0.30	3	0	1	2	0	0	0
...............TGCAAAGAGATCGGCCAATTCCTGAT..................................................................................................................................................................................................................	26	1	9	0.22	2	2	0	0	0	0	0
.............TGTGCAAAGAGATCGGCCAATTCCTGA...................................................................................................................................................................................................................	27	1	5	0.20	1	1	0	0	0	0	0
...............TGCAAAGAGATCGGCCATTTCCT.....................................................................................................................................................................................................................	23	0	5	0.20	1	1	0	0	0	0	0
...............TGCAAAGAGATCGGCCATTTC.......................................................................................................................................................................................................................	21	0	5	0.20	1	1	0	0	0	0	0
.................CAAAGAGATCGGCCATTTCCTGAT..................................................................................................................................................................................................................	24	0	5	0.20	1	1	0	0	0	0	0
.............................................................................GATGTAGCTTTTCTTCTTA...........................................................................................................................................................	19	2	5	0.20	1	0	0	1	0	0	0
...............TGCAAAGAGATCGGCCATTTCCTGAC..................................................................................................................................................................................................................	26	1	5	0.20	1	1	0	0	0	0	0
..........................................................................................................TACAAAGTTATAAAACTGCTGCGGA........................................................................................................................	25	0	6	0.17	1	0	0	0	1	0	0
.............TGTGCAAAGAGATCCGCCACTTCCT.....................................................................................................................................................................................................................	25	2	7	0.14	1	1	0	0	0	0	0
.............TGTGCAAAGAGATCGGCCATTTCTTGA...................................................................................................................................................................................................................	27	1	8	0.13	1	0	0	0	0	0	1
...............................ATTTCCTGATCAGTGTTCGCA.......................................................................................................................................................................................................	21	0	8	0.13	1	0	0	0	1	0	0
..................AAAGAGATCGGCCACTTCCTGATC.................................................................................................................................................................................................................	24	1	8	0.13	1	1	0	0	0	0	0
....................................................................CCAGTTTGGGATGTATCTTTT..................................................................................................................................................................	21	3	9	0.11	1	1	0	0	0	0	0
..............................................................................................................................................................................................ATCCTTATAAGAGCACCCCA.........................................	20	3	9	0.11	1	0	1	0	0	0	0
.............TGTGCAAAGAGATCCGCCATTTCCTT....................................................................................................................................................................................................................	26	2	10	0.10	1	1	0	0	0	0	0
.............TGTGCAAAGGGATCGGCCATTTCT......................................................................................................................................................................................................................	24	2	11	0.09	1	1	0	0	0	0	0
....................................................................................................................................................................................................................AAACACCCTGTTGAAAGCCT...................	20	3	11	0.09	1	0	0	0	0	1	0
...................................................................................................................................TCCTGAGTAACCTGTATCCTGC..................................................................................................	22	1	12	0.08	1	0	1	0	0	0	0
.........................................................................................................................................GTAAACTGTATCCTGCAGCGG.............................................................................................	21	0	12	0.08	1	0	0	1	0	0	0
..................................................................................................................................ATCCTTAGTAAACTGTATCCTGCAG................................................................................................	25	1	13	0.08	1	0	1	0	0	0	0
...............TTCTAAGAGATCGGCCATTTCCTGAA..................................................................................................................................................................................................................	26	3	14	0.07	1	0	1	0	0	0	0
.....................................................................................................................................................CCGCAGCGGTTAAACGTGG...................................................................................	19	3	14	0.07	1	0	1	0	0	0	0
...................................................................................................................................TCCTGAGTAAACTGTATCCTGCAC................................................................................................	24	1	14	0.07	1	0	1	0	0	0	0
.............TGTGCAAAGAGATTGGCCATTTCCTGA...................................................................................................................................................................................................................	27	1	15	0.07	1	1	0	0	0	0	0
...............................................................AAAAAGCAGTGGGGGAAG..........................................................................................................................................................................	18	2	15	0.07	1	0	0	0	1	0	0
..........................GGGCCATGTCCTGATCTGTGT............................................................................................................................................................................................................	21	3	18	0.06	1	0	0	0	0	1	0
....TGATAAAACTGTGCAAAGAGATCGGC.............................................................................................................................................................................................................................	26	1	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................CCGTATATCACTAACTCC.........................................................	18	3	20	0.05	1	1	0	0	0	0	0
................GCAAAGATATCGGCCTTCTCCTG....................................................................................................................................................................................................................	23	3	20	0.05	1	0	0	1	0	0	0

TCAAACTTTTTTGACACGTTTCTCTAGCCGGTAAAGGACTAGTCACAAGCGTATTCTCAAGAGTTTGTCGTCACCCCCTACATAGAAAAGGAGAATCCAATCACAAATGTTTCAATATTTTGACGACGCCTAGGACTCATTTGACATAGGACGTCGCCAATATGCCCCGATAATAGGGCATATAGAGATCTAGGAATAATCTCGGGGGCTACTTTATGGGACAGCTTCCGGAAAACCTGTCCTTACGTCTG *******************************************************************************************...............(((((((((((....((....))..)))).)))))))********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V055 head	M044 female body	M058 embryo	V039 embryo	V105 male body	V106 head
.......................CTAGCCGGTAAAGGACTAGTCACAAG..........................................................................................................................................................................................................	26	0	3	0.33	1	0	1	0	0	0	0
......................................................................................................................................................................CCGTTAATAGGGCAGATA...................................................................	18	2	4	0.25	1	1	0	0	0	0	0
.......................................................................................AAGGCGAATTCAATCACAA.................................................................................................................................................	19	2	5	0.20	1	1	0	0	0	0	0
...................................GGACTAGTCACAAGCGTATTCTCAAG..............................................................................................................................................................................................	26	0	20	0.10	2	0	0	2	0	0	0
......................................................................................................................................................................................TAGAGAGCAAGGGATAATC..................................................	19	3	13	0.08	1	0	0	0	0	1	0
.......................................................................CACCCCCCACATCGAACAG.................................................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0
...........TGACACGTTTCTCTAGCCG.............................................................................................................................................................................................................................	19	0	20	0.05	1	0	0	0	0	0	1
............................................................................................................GTGTCAGTATTCTGACGACG...........................................................................................................................	20	3	20	0.05	1	0	0	0	1	0	0
......................................................................................................................................................................................................ATCTCGGGCGCTGCTATA...................................	18	3	20	0.05	1	0	0	0	1	0	0
...................................GGACTAGTCACAAGCGTATTCTCAA...............................................................................................................................................................................................	25	0	20	0.05	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13499:1566263-1566513 -	dan_3374	AGTTTGAAAAAAC-TGTGCAAAGAGATCGGCCATTTCCTGATCAGTGTTCGCATAAGAGTTCTCAAACAGCAGTGGGGGATGTA-TC-TTTTCCT--CTTAGGTTAGTGTTTACAAAGTTATAAAACTGCTGCGGATC--CTGAGTAAACTGTATCCTGCAGCGGTT--ATA--------------CGGGG------------------CTA----TTATCCCGTATATCT---------CT-AGATCCTTATTAGAGCCCCCGATGAAATACCCTGTCGAAGGCCTTTTGGACAG---GAATGCAGAC
droBip1	scf7180000395705:18689-18916 +		TGCTAGAAAAAAGCTGTGAAAAAATATCGGTAATGGTTTGATCCATATTTGTTGATAAGTTTTCAACCGTAAGCATCGGAGGTAACTATACATTT--TTACGTGAAGTGTTTACAAATTTATTAAACAGCTTTTGATC--CTGAGTAAACTGAATCCGACAGCGGCG-AATATTACTATTATATCCTTTCGCGTTTTTCTCGGTGAAAT--------------------------------------------TAGACCGTCCTACTAAGTATCTTG--------------------------------
droKik1	scf7180000297904:8597-8799 +		AGTTTTGAAAAAG-TCGGCAAAGAGATCGGCGATGGCCTGGTCAGAGTTTGCTGTAGTCTTATTAAAATAAAGCGAGGAAGGATATAGATTGGGT--TTTCGTTTAGTGTTAACAAAGTTATAAAACTGTTTGGGGTC--CTGCGTGAACTGAACCCTACAGCGAGT-TAAATAACTCGTATAACACTGAGCGTTTAGCACGGTGAAAT----------------------------------------------------------------------------------------------------
droFic1	scf7180000452016:10999-11143 -		TGTTTGAAAAAAC-TGGGCAAATGAATCGGCCATTGCCTGATCCGATGTTACCGTAGT-----------------AGGAAGGGAAAGAAGATGTT--TTACGCTTAGTATTAACGAATTTATAAAACTGTTTCGGATC--CTGCGCAAACTGGACCTTGCAACGGTT----------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000486764:40175-40329 +		G-TTTGGAAAAAC-TGTGCA--GAGATCGGCAATTGCCTGATCAGTAATTGCCGTAAG---------------------------AGAGACGGAT--TTACGCTTAGTGTTAACAAAATTATAAAACTGTTTTGGATC--TTAAGAAAACTGGATCCTATAACGAGT-TAAGTAGCCAATATAACACT-------------------------------------------------------AGA---------------------------------------------------------------
droRho1	scf7180000765601:5092-5328 -		TGTCTTGAAAAAC-TGGTCAAATAGATCGGCAATTGCCTGATCAGAATTTGACGTAGAGTTTTCGAATGATAGTGATGCAGGGTAACAGGCTGAT--TTACGCTTAGTGTTAACAAAATTATAAAACTGTTTTGGATC--TTGTAAAAATTGGACCCTACAACGAGT-CAAATAGCTTTTATAACTCCGGGCGTTAAGCACGATAAAAT--------------------------------------------TTGACCGAGCCCTTA---------------------GGTACAGAGAGAAGGCAGA-
droBia1	scf7180000301770:3621-3779 -		GGTTTGAAAAAAC-TGCGCAAAAAGGTCGGCTATGGTCTGATCAGTGCTTGCTGCCGAATTTTCAAAATTTAATGATGATGGAAAATTTGCAGGC--TTACGCTTTGTGTTAACAAAATTATAAAACTGTTTTGGATC--CGGTGTAAACTGGGTCTTGCAACG-------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414334:1525-1683 +		GGTTTGGAAAAGC-TGTGCAAAAAGATCGGCTATGGCCTGATCTGTGTTTGCGGCAGAATTTTCAAATTTAAGGGTCGATGGGTATCTTGAAGAT--TTACGCTTAGTGTTAACAAAATTATAAAACTGTTTTGGATC--CAGTGTAAACTGCGTCTTACAACG-------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409759:181154-181312 +		GGTTTGAAAAAAC-TGTGCAAAAAGATCGGCAATTTCCTGATCCGTGCTTGCATTAGATTTTCCAAACGATAGCAAAGACGGAAAGGTTTTAGAT--TTACGCTTAGTGTTAACAAAACTATAGAACTGCTTCGGATC--CAGAGCAAACTGGTTCTTACATCG-------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chrUextra:610957-611127 +		TGTTTGAAAAAAC-TTGGCGAATAGATCGGCTATTGTCTGATCCGATGTTACCGTAGTGTTTTCAAAAAACAGCGAGGAAGGGTAAGAACTTGTT--TTTCGCTTAGTGCTAACGAAATTATAAAACTGTTTCGGATC--CTGTGCAAACTGGAACTTACAACGGTA----------------GCACTGAG------------------------------------------------------C---------------------------------------------------------------
droSim2	2l:21505641-21505820 +		TATTTGAAAGAAC-TTGGCTAATAGATCAGCAAATGCCCAATTAGTG---------GCATTTTCAAAGAAAAGCGAGGAAGTGTAAGAAATTATT--TTGCGTTTAGTGTAAACGAAATTATAAAACTGTTTCAGGTTA-CTG-------------TTACAACGGTT-TATAAAGCTCTTATACAAC--------------------------------------TTATATATTAACTTATC-AGA---------------------------------------------------------------
droSec2	scaffold_1015:5623-5832 +		TGTTTGAAAAAAC-TTGGCGAATAGATCGGCTATTGCCTGATCCGATGTAACCTTAGTGTTTTCAAAAAATAGCGAGGAAGGGTAAGAACTTGTT--TTTCGCTTAGTGCTAACGAAATTATAAAACTGTTTCGGATC--CTGTGCAAACTGGAACTTACAACTTTA---AG--------------CAGGG------------------AAATTTCTGCACCT--GTATCTA-----------------TTAAAAGAGTTACCCATGAA----------------------------------------
droYak3	v2_chrUn_4206:325993-326220 -		GGTTTAA-AAAAC-TTTCCAAATAGATCGGCTCTTGCCTGATCCGCCGTTACCGTAGTATTTTTAAAAAATACCGGGGATGGGTAAGTTGTTATT--TTGCGCATAGTGTTAACGAAATTATAAAACTGTTTGGAATC--CTGTGCGAACTGGAACTTACAACGGTT-TAAATAATTCTCATAACACTGAGCACTTAT----------------------TCTTATTATTT---------ATCATAAACTTATTTTGGCGCCCGAT-------------------------------------------
droEre2	scaffold_4845:809946-810107 -		TGTTTGAAAAAAC-TGGGCAAACAGATCGGCTATTGCCTGAACCTATGTTACAGTAGTGTTTTCAAAAAATAACGCGGAAGGGTAAGAAATCGTC--TTGCGCTTAGTGTTAACGAAGTTATAAAACTGTTTCGGATC--CTGTGCGCACTGGAACTTACAACGGCT----------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_group_331:5664-5863 +		GGTTTGGAAAAAT-TGGGCAAAAAGATCTGCGATTTCCTGATCATTATTTGCCGACGTATTAG-----------------GTATCATTTCCTAATTTCCGAGGATACTGTTTACGAAGCAGTAACAGTGCTTAAGGTGAGCTG-------------TTCCAACGATT-TCCG--------------CAGGA------------------GTA----TAATCT-------CG---------GCCCCACACCAAGGTCGGCTCCCGAAGAGAACTCCCGTCAAGGG-------------------------
droPer2	scaffold_232:86742-86934 +		ATTTTTGAAAGAT-TGGGCAAATAGATCGGTAAT-TCCTGATTATT-TTTGCCGACGTATTAAAAAATGATAGCAAGAAAGGGTGTGCGGACGTT--CTACGCTTTCTGTTTACGAAGCTGTAAAACTGTTGGGGGTC--CTGTGAAAAACGTATC*CGGAGGAGAGCCATACTGACTTAGTATCG------------------------------------GGTATAACC---------TT-AGA---------------------------------------------------------------
droWil2	scf2_1100000004936:420904-421090 +		CGACTGAAAGAAT-TTAGCAAACAGATCTGCAATATCTTAATTATTATTACCAGTCTGGTCATTAAGTCTGAAGGTGGAAGGTAGTACATTAGAG--CGTCTTTTGGAATTAACAAAGTTGTAAAATCTGTTGGGATT--CTTATAAAATTCAACCTTACAGCGAAC-GATATAATTATTGTATTGT--------------------------------------GTATTT------------------------------------------------------------------------------
droVir3	scaffold_12734:424970-425128 +		AGTTTGAAAA-AG-TTTGCGAACAGATCGGCTATGCCAGGATCAGTGTTCGCGCTCTCATCTACAAACTTAAACGAAGAAGGCAAAATAGATGTT--TTTCGTTTTGAATTGACAAAGTTAAATAATTGCTGGGGATT--ATGTGAAAATTGAAAGCGACAATGG------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6500:30030410-30030582 -		GGATAGAAAA-AA-TCTGCAAATAGATCAGAGGAATCCTGGTCATTGCAAGTTTTTTCACCATCAAGTACAAATGAGGACGGCAAACCAAAAAAT--TTACTATTCAAGTTTACAAATGAGTAAAATTGTTTAGGATC--TCGAGCAAACTGATGTTTGCAACGTAT-AAGATAATTATC---------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15110:24387450-24387619 -		AGATTGTAAATAT-TCAGCAAACAAATCGGCTGCATCCTGATCATTTTTTACTTTCGTATCTTCATGAA-AAACGGAGTTTGTTAAC--GACGAT--TTGCATTTCATATTCACGAAGTCACAGAACTGCCTGGGATC--CTTTGCAAATTGCAGCCTACATCGAAG-AAGGTTATTAT----------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

AGTTTGAAAAAAC-TGTGCAAAGAGATCGGCCATTTCCTGATCAGTGTTCGCATAAGAGTTCTCAAACAGCAGTGGGGGATGTA-TC-TTTTCCT--CTTAGGTTAGTGTTTACAAAGTTATAAAACTGCTGCGGATC--CTGAGTAAACTGTATCCTGCAGCGGTT--ATA--------------CGGGG------------------CTA----TTATCCCGTATATCT---------CT-AGATCCTTATTAGAGCCCCCGATGAAATACCCTGTCGAAGGCCTTTTGGACAG---GAATGCAGAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............TGTGCAAAGAGATCGGCCATTTCCT..............................................................................................................................................................................................................................................................................	25	3	0.67	2	0	0	2	0	0	0
...............GTGCAAAGAGATCGGCCATTTCCTGA............................................................................................................................................................................................................................................................................	26	3	0.33	1	0	0	1	0	0	0
..........AAC-TGTGCAAAGAGATCGGCCATTTC................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	0	1	0	0	0
................TGCAAAGAGATCGGCCATTTCCT..............................................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	1	0	0	0
................TGCAAAGAGATCGGCCATTTC................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	1	0	0	0
..................CAAAGAGATCGGCCATTTCCTGAT...........................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	1	0	0	0
................TGCAAAGAGATCGGCCATTTCCTGAC...........................................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	1	0	0	0
...............................................................................................................TACAAAGTTATAAAACTGCTGCGGA.............................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	1
................................ATTTCCTGATCAGTGTTCGCA................................................................................................................................................................................................................................................................	21	8	0.13	1	0	0	0	0	0	1
................................................................................................................................................GTAAACTGTATCCTGCAGCGG................................................................................................................................................	21	12	0.08	1	1	0	0	0	0	0
........................................................................................................................................TC--CTGAGTAAACTGTATCCTGCAC...................................................................................................................................................	24	14	0.07	1	0	1	0	0	0	0

droBip1

TGCTAGAAAAAAGCTGTGAAAAAATATCGGTAATGGTTTGATCCATATTTGTTGATAAGTTTTCAACCGTAAGCATCGGAGGTAACTATACATTT--TTACGTGAAGTGTTTACAAATTTATTAAACAGCTTTTGATC--CTGAGTAAACTGAATCCGACAGCGGCG-AATATTACTATTATATCCTTTCGCGTTTTTCTCGGTGAAAT--------------------------------------------TAGACCGTCCTACTAAGTATCTTG--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGTTTTGAAAAAG-TCGGCAAAGAGATCGGCGATGGCCTGGTCAGAGTTTGCTGTAGTCTTATTAAAATAAAGCGAGGAAGGATATAGATTGGGT--TTTCGTTTAGTGTTAACAAAGTTATAAAACTGTTTGGGGTC--CTGCGTGAACTGAACCCTACAGCGAGT-TAAATAACTCGTATAACACTGAGCGTTTAGCACGGTGAAAT----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTTTGAAAAAAC-TGGGCAAATGAATCGGCCATTGCCTGATCCGATGTTACCGTAGT-----------------AGGAAGGGAAAGAAGATGTT--TTACGCTTAGTATTAACGAATTTATAAAACTGTTTCGGATC--CTGCGCAAACTGGACCTTGCAACGGTT----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

G-TTTGGAAAAAC-TGTGCA--GAGATCGGCAATTGCCTGATCAGTAATTGCCGTAAG---------------------------AGAGACGGAT--TTACGCTTAGTGTTAACAAAATTATAAAACTGTTTTGGATC--TTAAGAAAACTGGATCCTATAACGAGT-TAAGTAGCCAATATAACACT-------------------------------------------------------AGA---------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGTCTTGAAAAAC-TGGTCAAATAGATCGGCAATTGCCTGATCAGAATTTGACGTAGAGTTTTCGAATGATAGTGATGCAGGGTAACAGGCTGAT--TTACGCTTAGTGTTAACAAAATTATAAAACTGTTTTGGATC--TTGTAAAAATTGGACCCTACAACGAGT-CAAATAGCTTTTATAACTCCGGGCGTTAAGCACGATAAAAT--------------------------------------------TTGACCGAGCCCTTA---------------------GGTACAGAGAGAAGGCAGA-	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGTTTGAAAAAAC-TGCGCAAAAAGGTCGGCTATGGTCTGATCAGTGCTTGCTGCCGAATTTTCAAAATTTAATGATGATGGAAAATTTGCAGGC--TTACGCTTTGTGTTAACAAAATTATAAAACTGTTTTGGATC--CGGTGTAAACTGGGTCTTGCAACG-------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGTTTGGAAAAGC-TGTGCAAAAAGATCGGCTATGGCCTGATCTGTGTTTGCGGCAGAATTTTCAAATTTAAGGGTCGATGGGTATCTTGAAGAT--TTACGCTTAGTGTTAACAAAATTATAAAACTGTTTTGGATC--CAGTGTAAACTGCGTCTTACAACG-------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGTTTGAAAAAAC-TGTGCAAAAAGATCGGCAATTTCCTGATCCGTGCTTGCATTAGATTTTCCAAACGATAGCAAAGACGGAAAGGTTTTAGAT--TTACGCTTAGTGTTAACAAAACTATAGAACTGCTTCGGATC--CAGAGCAAACTGGTTCTTACATCG-------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGTTTGAAAAAAC-TTGGCGAATAGATCGGCTATTGTCTGATCCGATGTTACCGTAGTGTTTTCAAAAAACAGCGAGGAAGGGTAAGAACTTGTT--TTTCGCTTAGTGCTAACGAAATTATAAAACTGTTTCGGATC--CTGTGCAAACTGGAACTTACAACGGTA----------------GCACTGAG------------------------------------------------------C---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................TTATAAAACTGTTTCGGATC--CTGTGC...................................................................................................................................................................	26	20	213.05	4261	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	25	106	0	0	0	0	0	0	0	0	0	0	0	0	0	0	154	0	0	0	55	0	0	7	163	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	147	451	296	0	0	243	0	0	0	0	121	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	78	0	165	0	0	0	0	0	0	0	0	4	5	0	0	0	69	0	0	0	0	0	0	0	0	0	137	0	0	0	570	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	654	0	587	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53	0	78	0	0	0	0	0	0	0
.............................................................................GAAGGGTAAGAACTTGTT--TTTCGCT.............................................................................................................................................................................................................	25	20	191.00	3820	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	7	3	0	0	0	0	0	0	0	0	0	0	0	0	6	0	6	0	16	17	13	0	0	1	0	0	0	13	31	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	44	0	0	0	66	0	0	0	0	0	64	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	10	0	0	139	84	0	0	0	18	0	0	575	502	918	9	52	0	0	8	40	0	45	0	0	0	0	0	0	0	0	0	0	0	0	0	61	4	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	53	0	0	124	1	0	0	0	0	0	340	270	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	0	44	40	0	0	0	0	0	0
......................................................................................................................TTATAAAACTGTTTCGGATC--CTGTG....................................................................................................................................................................	25	20	86.05	1721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	47	0	0	1	0	5	0	0	22	3	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	40	0	101	0	0	94	0	4	0	107	124	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	39	0	0	0	2	0	3	8	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	381	0	0	0	177	0	337	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	40	0	0	0	0	0	0	0	0	0	0	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	5	0	0	0	0	0	0	0
......................................................................................................................TTATAAAACTGTTTCGGATC--CTGT.....................................................................................................................................................................	24	20	63.40	1268	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	7	0	0	0	0	0	1	0	0	0	0	69	0	0	35	0	0	41	0	0	0	0	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	17	0	0	0	0	0	5	0	9	0	0	0	0	1	0	0	0	0	0	24	0	0	0	0	0	0	0	375	370	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	51	0	0	0	0	0	20	0	0	64	0	0	0	0	0	0	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	11	0	0	0	0	0	0
..............................................................................................................................CTGTTTCGGATC--CTGTGCAAACTGG............................................................................................................................................................	25	20	44.45	889	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	5	5	0	0	0	0	3	1	2	0	17	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	9	0	2	12	0	4	0	0	0	0	0	0	0	0	0	0	86	0	2	0	0	0	0	5	0	0	272	40	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	1	0	0	0	0	0	0	0	0	131	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	123	83	0	0	0	0	0	0	0
...............................................................................AGGGTAAGAACTTGTT--TTTCGCT.............................................................................................................................................................................................................	23	20	41.90	838	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	304	526	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TACCGTAGTGTTTTCAAAAAACAGC...........................................................................................................................................................................................................................................	25	20	36.75	735	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	4	0	0	0	0	0	1	0	0	0	0	0	0	2	3	2	0	12	3	0	0	8	0	13	0	8	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	2	0	0	7	12	0	32	21	26	11	23	15	24	22	0	16	24	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	3	0	12	3	0	2	1	3	0	0	0	0	0	6	13	0	0	0	0	0	0	0	0	0	7	2	2	3	25	11	153	43	46	20	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	12	0	4	6	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	3	0	0	0	0	0	0
.................................................TACCGTAGTGTTTTCAAAAAACAGCG..........................................................................................................................................................................................................................................	26	20	33.70	674	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	0	0	0	0	0	0	0	0	0	0	0	6	0	6	0	0	0	8	0	0	1	9	0	11	2	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	46	18	26	8	18	20	24	11	0	8	33	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	5	0	6	0	7	0	0	1	0	12	0	0	0	0	0	42	21	0	0	1	0	0	0	0	0	0	49	2	0	15	6	0	0	15	0	9	6	93	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	29	0	5	0	0	0	0	0	0	0	15	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	9	3	0	0	0	0	0	0	0
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..............................................................................................................................CTGTTTCGGATC--CTGTGCAAACTGGA...........................................................................................................................................................	26	20	17.10	342	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	0	12	0	0	0	0	6	0	0	0	10	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	180	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0
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................................................................................................................................................GCAAACTGGAACTTACAACGGT...............................................................................................................................................	22	20	13.80	276	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	104	0	0	169	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................ACTGGAACTTACAACGGT...............................................................................................................................................	18	20	9.15	183	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	183	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................TGTGCAAACTGGAACTTACAACGGTA----------------GC............................................................................................................................	28	5	1.80	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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TGTTTGAAAAAAC-TTGGCGAATAGA...........................................................................................................................................................................................................................................................................................	25	20	1.60	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	2	0	0	0	0	0	0
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....................................................................................................................................................ACTGGAACTTACAACGGTA----------------GCACTGA.......................................................................................................................	26	5	1.60	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................AAACTGTTTCGGATC--CTGTGC...................................................................................................................................................................	21	20	1.50	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0
...............................................................................................................................................TGCAAACTGGAACTTACAACGGTA----------------..............................................................................................................................	24	9	1.44	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................TTCAAAAAACAGCGAGGAAGG...................................................................................................................................................................................................................................	21	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................CTTACAACGGTA----------------GCACTGAG------------------------------------------------------C---------------------------------------------------------------	21	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AAC-TTGGCGAATAGATCGGCTATT..................................................................................................................................................................................................................................................................................	24	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AC-TTGGCGAATAGATCGGCTAT...................................................................................................................................................................................................................................................................................	22	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................AAACTGGAACTTACAACGGTA----------------GCAC..........................................................................................................................	25	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................AGTGCTAACGAAATTATAAAACTGT...................................................................................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AAGGGTAAGAACTTGTT--TT..................................................................................................................................................................................................................	19	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TATTTGAAAGAAC-TTGGCTAATAGATCAGCAAATGCCCAATTAGTG---------GCATTTTCAAAGAAAAGCGAGGAAGTGTAAGAAATTATT--TTGCGTTTAGTGTAAACGAAATTATAAAACTGTTTCAGGTTA-CTG-------------TTACAACGGTT-TATAAAGCTCTTATACAAC--------------------------------------TTATATATTAACTTATC-AGA---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................TACAACGGTT-TATAAAGCTCTTATA..............................................................................................................................	25	1	23.00	23	0	0	0	0	0	0	0	12	0	11	0	0	0	0	0	0	0
....TGAAAGAAC-TTGGCTAATAGATCAGC......................................................................................................................................................................................................................................................................................	26	1	13.00	13	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0
......................................................................................................................TTATAAAACTGTTTCAGGTTA-CTG-------------T........................................................................................................................................................	25	1	9.00	9	0	0	0	0	0	0	0	5	0	4	0	0	0	0	0	0	0
...............................................................................................................................TGTTTCAGGTTA-CTG-------------TT.......................................................................................................................................................	17	1	7.00	7	0	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0
......................................................................................................................TTATAAAACTGTTTCAGGTTA-CTG-------------TT.......................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0
...........................................................TTTTCAAAGAAAAGCGAGGAAGTGTA................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	2	0	2	1	0	0	0	0	0	0
..TTTGAAAGAAC-TTGGCTAATAGATCAGC......................................................................................................................................................................................................................................................................................	28	1	4.00	4	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................TACAACGGTT-TATAAAGCTCTTATAC.............................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
..............................................................................AAGTGTAAGAAATTATT--TTGCGTTT............................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................................AGCGAGGAAGTGTAAGAAATTATT--....................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TATACAAC--------------------------------------TTATATATTAACTTATC-AGA---------------------------------------------------------------	28	1	3.00	3	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0
....TGAAAGAAC-TTGGCTAATAGATCAGCA.....................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0
..............................................................TCAAAGAAAAGCGAGGAAGTGTAAGAAAT..........................................................................................................................................................................................................................	29	1	3.00	3	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0
.............................................................TTCAAAGAAAAGCGAGGAAGTGTA................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0
...............................................................................................................................TGTTTCAGGTTA-CTG-------------TTACAACGGT...............................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
................................................................AAAGAAAAGCGAGGAAGTGTAAGAAAT..........................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................TACAACGGTT-TATAAAGCTCTTA................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
...................TAATAGATCAGCAAATGCCCAATTAG........................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...TTGAAAGAAC-TTGGCTAATAGATCAGC......................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................TGTTTCAGGTTA-CTG-------------TTACAACGGTT-.............................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.............................................................................................................................................................TACAACGGTT-TATAAAGCTCTTATACAAC--------------------------------------....................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...................................................................................TAAGAAATTATT--TTGCGT..............................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TACAACGGTT-TATAAAGCTCTTATACAAC--------------------------------------T...................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATAAAGCTCTTATACA............................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................G---------GCATTTTCAAAGAAAAGCGAGGAA.....................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................TACAACGGTT-TATAAAGCT....................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................AGTGTAAGAAATTATT--TTGCGTTT............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................AAGCGAGGAAGTGTAAGAAATTATT--....................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................TAGATCAGCAAATGCCCAATTAGTG---------GC...........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TATT--TTGCGTTTAGTGTAAACG..................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................TGTAAGAAATTATT--TTGCGTTTAGTGT.......................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
TATTTGAAAGAAC-TTGGCTAATAGATCAG.......................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................AGTGTAAGAAATTATT--TTGCGTTTAG..........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................TTCAAAGAAAAGCGAGGAAGTGTAAGAAA...........................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................AGTG---------GCATTTTCAAAGA................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................GAGGAAGTGTAAGAAATTATT--TTGCG...............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................TACAACGGTT-TATAAAGCTCTTAT...............................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................AAAGAAAAGCGAGGAAGTGTAAGAAATT.........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................G---------GCATTTTCAAAGAAAAGCGAGGAAG....................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................AAAGAAAAGCGAGGAAGTGTAAGAAA...........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................AGAAAAGCGAGGAAGTGTAAGAAATTA........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
TATTTGAAAGAAC-TTGGCTAATAGA...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....TGAAAGAAC-TTGGCTAATAGATCAGCAAA...................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.ATTTGAAAGAAC-TTGGCTAATAGA...........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................G---------GCATTTTCAAAGAAAAGCGAGGA......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..TTTGAAAGAAC-TTGGCTAATAGATC.........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................AGTG---------GCATTTTCAAAGAAAAGCGAGGA......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................GTGTAAGAAATTATT--TTGCGTTTAGTG........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................TACAACGGTT-TATAAAGCTCTTATACA............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................TCAAAGAAAAGCGAGGAAGTGTAAGAAA...........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................AGAAATTATT--TTGCGTTT............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................TAGTGTAAACGAAATTATA..........................................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................TGCGTTTAGTGTAAA....................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................TCAGGTTA-CTG-------------TTACAACGGT...............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................AGCGAGGAAGTGTAAGAAATTATT--T...................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
TATTTGAAAGAAC-TTGGCTAATAGATC.........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TTATAAAACTGTTTCAGGTTA-CTG-------------.........................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................TAAGAAATTATT--TTGCGTTTAGTGTA......................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.ATTTGAAAGAAC-TTGGCTAATAG............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................AAGTGTAAGAAATTATT--TTGCGTT.............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................AACGAAATTATAAAACTGTT..................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................ACGAAATTATAAAACTGT...................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................TTATAAAACTGTTTC................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

TGTTTGAAAAAAC-TTGGCGAATAGATCGGCTATTGCCTGATCCGATGTAACCTTAGTGTTTTCAAAAAATAGCGAGGAAGGGTAAGAACTTGTT--TTTCGCTTAGTGCTAACGAAATTATAAAACTGTTTCGGATC--CTGTGCAAACTGGAACTTACAACTTTA---AG--------------CAGGG------------------AAATTTCTGCACCT--GTATCTA-----------------TTAAAAGAGTTACCCATGAA----------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................TGTTTCGGATC--CTGTGCAAACTGG............................................................................................................................................................	24	20	10.65	213	186	0	27	0
...............................................................................................................................TGTTTCGGATC--CTGTGCAAACTGGAAC.........................................................................................................................................................	27	20	1.15	23	22	0	1	0
...............................................................................................................................TGTTTCGGATC--CTGTGCAAACTG.............................................................................................................................................................	23	20	0.75	15	0	0	15	0
...............................................................................................................................TGTTTCGGATC--CTGTGCAAACTGGAACT........................................................................................................................................................	28	20	0.75	15	15	0	0	0
.................................................................................................................................................................................................................AAATTTCTGCACCT--GTATCTA-----------------TTAAA.......................................................	26	20	0.35	7	7	0	0	0
.....................................................TTAGTGTTTTCAAAAAATAGCGAGGAAGG...................................................................................................................................................................................................................................	29	3	0.33	1	1	0	0	0
.......................................................AGTGTTTTCAAAAAATAGCGAGGA......................................................................................................................................................................................................................................	24	20	0.30	6	6	0	0	0
..............................................................................................................................................................................................G------------------AAATTTCTGCACCT--GTATCT..............................................................................	21	20	0.30	6	6	0	0	0
...............................................................................................................................TGTTTCGGATC--CTGTGCAAACTGGAA..........................................................................................................................................................	26	20	0.25	5	0	1	0	4
..........................TCGGCTATTGCCTGATCCGATGTAACC................................................................................................................................................................................................................................................................	27	20	0.25	5	5	0	0	0
.................................................................................................................................................................................................................AAATTTCTGCACCT--GTATCTA-----------------TTAAAAG.....................................................	28	20	0.20	4	4	0	0	0
..................................................................................................................................................................................................................AATTTCTGCACCT--GTATCTA-----------------T...........................................................	21	20	0.20	4	4	0	0	0
...............................................................................................................................TGTTTCGGATC--CTGTGCAAACT..............................................................................................................................................................	22	20	0.20	4	0	0	4	0
....................................................................................................................................................................................................................TTTCTGCACCT--GTATCTA-----------------TTA.........................................................	21	20	0.20	4	4	0	0	0
....................................................................................AAGAACTTGTT--TTTCGCTTAGTG........................................................................................................................................................................................................	23	20	0.20	4	4	0	0	0
.................................................................................................................................................................................................................AAATTTCTGCACCT--GTATCTA-----------------............................................................	21	20	0.15	3	3	0	0	0
.........................................................TGTTTTCAAAAAATAGCGAGGAAGGG..................................................................................................................................................................................................................................	26	20	0.15	3	2	0	1	0
.....................................................................................AGAACTTGTT--TTTCGCTTAGTGC.......................................................................................................................................................................................................	23	20	0.15	3	3	0	0	0
.................................................................................................................................................................................................................AAATTTCTGCACCT--GTATCTA-----------------TTAA........................................................	25	20	0.15	3	3	0	0	0
......................................................TAGTGTTTTCAAAAAATAGCGAG........................................................................................................................................................................................................................................	23	20	0.15	3	0	0	3	0
............C-TTGGCGAATAGATCGGCTATTGC................................................................................................................................................................................................................................................................................	24	20	0.15	3	3	0	0	0
......................TAGATCGGCTATTGCCTGATCCGATGTA...................................................................................................................................................................................................................................................................	28	20	0.15	3	3	0	0	0
.......................................................................................................................................................................................................................................A-----------------TTAAAAGAGTTACCCATGA.........................................	20	20	0.10	2	1	0	1	0
............................................................TTTCAAAAAATAGCGAGGAAGG...................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0
.....................................................................................................................................................................................................................................CTA-----------------TTAAAAGAGTTACCCATG..........................................	21	20	0.10	2	2	0	0	0
...........................................................................................................................................................................................AGGG------------------AAATTTCTGCACCT--GTA.................................................................................	21	20	0.10	2	2	0	0	0
.................................................................................................................................................................................................................AAATTTCTGCACCT--GTATCTA-----------------TTAAAA......................................................	27	20	0.10	2	2	0	0	0
.......................................................................................................................................................................................................................CTGCACCT--GTATCTA-----------------TTAAA.......................................................	20	20	0.10	2	2	0	0	0
....TGAAAAAAC-TTGGCGAATAGATCGGC......................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	2	0
...........................................................................................................TGCTAACGAAATTATAAAACTGTT..................................................................................................................................................................................	24	20	0.10	2	2	0	0	0
.....................ATAGATCGGCTATTGCCTGAT...........................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0
.................................................................................................................................TTTCGGATC--CTGTGCAAACTGG............................................................................................................................................................	22	20	0.10	2	2	0	0	0
...................................................................................TAAGAACTTGTT--TTTCGCTTAG..........................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0
...................................................................................TAAGAACTTGTT--TTTCGCTTAGTGC.......................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
......................................................TAGTGTTTTCAAAAAATAGCGAGGG......................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
..................................................................................................................................................................................................................AATTTCTGCACCT--GTATCTA-----------------TTA.........................................................	23	20	0.05	1	1	0	0	0
...................................................................................................................................TCGGATC--CTGTGCAAACTGGA...........................................................................................................................................................	21	20	0.05	1	1	0	0	0
....................................................................................................................................................................TTA---AG--------------CAGGG------------------AAATTTCTGCA.........................................................................................	21	20	0.05	1	1	0	0	0
..............................................................................................................................CTGTTTCGGATC--CTGTGCAAACTGGA...........................................................................................................................................................	26	20	0.05	1	0	0	1	0
.................................................................................................................................................................................................................AAATTTCTGCACCT--GTATCT..............................................................................	20	20	0.05	1	1	0	0	0
....................................................................................................................................................................................................................................TCTA-----------------TTAAAAGAGTTACCCATG..........................................	22	20	0.05	1	1	0	0	0
...............................................................................................................................TGTTTCGGATC--CTGTGCAAACTGCT...........................................................................................................................................................	25	20	0.05	1	0	1	0	0
............................................................................................................................................................................................GGG------------------AAATTTCTGCACCT--GTAT................................................................................	21	20	0.05	1	1	0	0	0
........................................................GTGTTTTCAAAAAATAGCGAGGAA.....................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0
.....................................................................ATAGCGAGGAAGGGTAAGA.............................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0
...................................................................................TAAGAACTTGTT--TTTCGCTTAGTGCT......................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
........................................................................................................................................................................................................................TGCACCT--GTATCTA-----------------TTAAAAGAGTT.................................................	25	20	0.05	1	1	0	0	0
.....GAAAAAAC-TTGGCGAATAGATCGG.......................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0
...........................................................................................TGTT--TTTCGCTTAGTGCTAACGA.................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
..........................................................................................TTGTT--TTTCGCTTAGTGCTAACGA.................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0
......................................................................................GAACTTGTT--TTTCGCTTAGTGCTAACG..................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0
....................................................................................................................................................................................................................TTTCTGCACCT--GTATCTA-----------------TT..........................................................	20	20	0.05	1	1	0	0	0
.......AAAAAC-TTGGCGAATAGATCG........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1
................................................................................................................................GTTTCGGATC--CTGTGCAAACTGGAAC.........................................................................................................................................................	26	20	0.05	1	1	0	0	0
...................................................................................................................................................................TTTA---AG--------------CAGGG------------------AAATTTCTGCACCT--GTA.................................................................................	28	20	0.05	1	0	0	1	0
......................................................TAGTGTTTTCAAAAAATAGCGAGGAAG....................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	1
............................................................................................................................................................................................GGG------------------AAATTTCTGCACCT--GTA.................................................................................	20	20	0.05	1	1	0	0	0
..............................................................................................................TAACGAAATTATAAAACTGTT..................................................................................................................................................................................	21	20	0.05	1	1	0	0	0
......................................................TAGTGTTTTCAAAAAATAGCGAGGAAGT...................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0
.GTTTGAAAAAAC-TTGGCG.................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0
.....................................................................................................................................................................................................................TTCTGCACCT--GTATCTA-----------------TTAAA.......................................................	22	20	0.05	1	1	0	0	0
......................................................TAGTGTTTTCAAAAAATAGCGAGGAAGA...................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0
.................................................................................................................................................................................................................AAATTTCTGCACCT--GTATCTA-----------------TTAAAAGA....................................................	29	20	0.05	1	1	0	0	0
..................................................................................................................................................................................................................AATTTCTGCACCT--GTATCTA-----------------TTAAAAG.....................................................	27	20	0.05	1	1	0	0	0
.................................................................................................................CGAAATTATAAAACTGTTTCGGA.............................................................................................................................................................................	23	20	0.05	1	1	0	0	0
.................................................................................................................................................................................................................AAATTTCTGCACCT--GTATCTA-----------------TT..........................................................	23	20	0.05	1	1	0	0	0
......................................................TAGTGTTTTCAAAAAATAGCGA.........................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0
.............................................................................................................................................................................................GG------------------AAATTTCTGCACCT--GTATCTA-----------------T...........................................................	24	20	0.05	1	1	0	0	0
......................................................................................................................................................................................................................TCTGCACCT--GTATCTA-----------------TTAAAAGAGT..................................................	26	20	0.05	1	0	0	1	0
.......................................................AGTGTTTTCAAAAAATAGCGAGGAAG....................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
...........................................................................................................................................................................................AGGG------------------AAATTTCTGCACCT--GTATCTA-----------------T...........................................................	26	20	0.05	1	1	0	0	0
........................................................GTGTTTTCAAAAAATAGCGAGGA......................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
.............................................................................................................................................................................................................................CT--GTATCTA-----------------TTAAAAGAGTTA................................................	21	20	0.05	1	0	0	1	0
..................................................................................................................................................................................................................AATTTCTGCACCT--GTATCTA-----------------............................................................	20	20	0.05	1	1	0	0	0
.................................................................................................TTTCGCTTAGTGCTAACGAAATTATA..........................................................................................................................................................................................	26	20	0.05	1	1	0	0	0
........................................................................................................................................................................................................................TGCACCT--GTATCTA-----------------TTAAAAG.....................................................	21	20	0.05	1	1	0	0	0
...........................................................................................................................................................................G--------------CAGGG------------------AAATTTCTGCACCT--G...................................................................................	21	20	0.05	1	1	0	0	0
....................................................................................AAGAACTTGTT--TTTCGCTTAG..........................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0
.......................................................................................................................................................................................................................................A-----------------TTAAAAGAGTTACCCATG..........................................	19	20	0.05	1	1	0	0	0
...........................................................TTTTCAAAAAATAGCGAGGAAGGGT.................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0
.....................................................................................AGAACTTGTT--TTTCGCTTAGTGCTAAC...................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0
.............................................................TTCAAAAAATAGCGAGGAAGGG..................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0
...............................................................................................................................TGTTTCGGATC--CTGTGCAAACTGATT..........................................................................................................................................................	26	20	0.05	1	1	0	0	0
....................................................................................AAGAACTTGTT--TTTCGCTTAGTGCTAA....................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0
....................................................................................AAGAACTTGTT--TTTCGCTTAGTGG.......................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0

droYak3

GGTTTAA-AAAAC-TTTCCAAATAGATCGGCTCTTGCCTGATCCGCCGTTACCGTAGTATTTTTAAAAAATACCGGGGATGGGTAAGTTGTTATT--TTGCGCATAGTGTTAACGAAATTATAAAACTGTTTGGAATC--CTGTGCGAACTGGAACTTACAACGGTT-TAAATAATTCTCATAACACTGAGCACTTAT----------------------TCTTATTATTT---------ATCATAAACTTATTTTGGCGCCCGAT-------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................TGCGAACTGGAACTTACAACGGTT-TA...........................................................................................................................................	26	20	0.60	12	0	0	0	0	0	0	0	0	0	0	12
........................................................................................................TAGTGTTAACGAAATTATAAAACTGTT..................................................................................................................................................................................	27	20	0.50	10	0	10	0	0	0	0	0	0	0	0	0
.......................................................................................................................TATAAAACTGTTTGGAATC--CTGTGCG..................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TGTGCGAACTGGAACTTACAACGGTT-.............................................................................................................................................	26	20	0.45	9	0	9	0	0	0	0	0	0	0	0	0
........................................................................................................TAGTGTTAACGAAATTATAAAACTGT...................................................................................................................................................................................	26	20	0.35	7	0	0	7	0	0	0	0	0	0	0	0
...............................................................................................................................................TGCGAACTGGAACTTACAACGGTT-.............................................................................................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................TC--CTGTGCGAACTGGAACTTACAACGGTC-.............................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1

droEre2

TGTTTGAAAAAAC-TGGGCAAACAGATCGGCTATTGCCTGAACCTATGTTACAGTAGTGTTTTCAAAAAATAACGCGGAAGGGTAAGAAATCGTC--TTGCGCTTAGTGTTAACGAAGTTATAAAACTGTTTCGGATC--CTGTGCGCACTGGAACTTACAACGGCT----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................TTATAAAACTGTTTCGGATC--CTGT.....................................................................................................................................................................	24	3	5.00	15	0	0	0	0	0	0	15
..........................................................................................................................AAAACTGTTTCGGATC--CTGTGCA..................................................................................................................................................................	23	4	3.50	14	0	0	0	0	0	0	14
......................................................................................................................TTATAAAACTGTTTCGGATC--CTGTG....................................................................................................................................................................	25	3	3.00	9	0	0	0	0	0	0	9
..........................................................................................................................AAAACTGTTTCGGATC--CTGT.....................................................................................................................................................................	20	4	1.00	4	0	0	0	0	0	0	4
......................................................................................................................TTATAAAACTGTTTCGGATC--CTGTGCA..................................................................................................................................................................	27	3	0.67	2	0	0	0	0	0	0	2
......................................................................................................................TTATAAAACTGTTTCGGATC--CTG......................................................................................................................................................................	23	3	0.67	2	0	0	0	0	0	0	2

dp5

GGTTTGGAAAAAT-TGGGCAAAAAGATCTGCGATTTCCTGATCATTATTTGCCGACGTATTAG-----------------GTATCATTTCCTAATTTCCGAGGATACTGTTTACGAAGCAGTAACAGTGCTTAAGGTGAGCTG-------------TTCCAACGATT-TCCG--------------CAGGA------------------GTA----TAATCT-------CG---------GCCCCACACCAAGGTCGGCTCCCGAAGAGAACTCCCGTCAAGGG-------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................TCCGAGGATACTGTTTACGAAGCA.............................................................................................................................................................................................	24	4	1.50	6	0	3	0	0	0	0	0	0	3	0
................................................................................................TCCGAGGATACTGTTTACGAAGCAG............................................................................................................................................................................................	25	4	1.00	4	0	1	0	0	0	0	0	0	3	0
................................................................................................TCCGAGGATACTGTTTACGAAGCAGT...........................................................................................................................................................................................	26	4	0.75	3	0	0	0	0	0	0	0	0	3	0
................................................................................................TCCGAGGATACTGTTTACGAAG...............................................................................................................................................................................................	22	4	0.50	2	0	0	0	0	0	0	0	0	2	0
.....................................CTGATCATTATTTGCCGACGTAT.........................................................................................................................................................................................................................................................	23	20	0.50	10	0	6	0	0	0	0	0	4	0	0
................................................................................................TCCGAGGATACTGTTTACGAAGC..............................................................................................................................................................................................	23	4	0.50	2	0	0	0	0	0	0	0	0	2	0
..............................................................................................TTTCCGAGGATACTGTTTACGAAGC..............................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................................................................TA----TAATCT-------CG---------GCCCCACACCAAGGT......................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................TCGGCTCCCGAAGAGAACTCCCGTC..............................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................TCCG--------------CAGGA------------------GTA----TAATCT-------CG---------GCCCC................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..TTTGGAAAAAT-TGGGCAAAAAGA...........................................................................................................................................................................................................................................................................................	23	20	0.40	8	0	7	0	0	0	0	1	0	0	0
.........................................................................................CCTAATTTCCGAGGATACTG........................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	1	0
.........AAAT-TGGGCAAAAAGATCTGC......................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	1	0
............................................................................................AATTTCCGAGGATACTGTTTACGAAA...............................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................CGAGGATACTGTTTACGAAAA..............................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	1	0
.....................................CTGATCATTATTTGCCGACGTA..........................................................................................................................................................................................................................................................	22	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..TTTGGAAAAAT-TGGGCAAAAAGATC.........................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	0	1	0	0	0	0	3	0	0
........................................................................................................TACTGTTTACGAAGCAGTAACAG......................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	1	0
....TGGAAAAAT-TGGGCAAAAAGA...........................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	4	0	0
.....................................CTGATCATTATTTGCCGACGT...........................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..TTTGGAAAAAT-TGGGCAAAAAGAT..........................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	2	0	0	0	0	0	1	0	0
..TTTGGAAAAAT-TGGGCAAAAAG............................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	2	0	0
..TTTGGAAAAAT-TGGGCAAAAAGAA..........................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.GTTTGGAAAAAT-TGGGCAAAAAGA...........................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	2	0	0
............................................................................................................................................................................................................................CT-------CG---------GCCCCACACCAAGG.......................................................	18	17	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................GATCATTATTTGCCGACGTAT.........................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....TGGAAAAAT-TGGGCAAAAAGAT..........................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................CCTGATCATTATTTGCCGACGTA..........................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................CTGATCATTATTTGCCGACGTATTA.......................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................ATCATTATTTGCCGACGTATT........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...TTGGAAAAAT-TGGGCAAAAAG............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................CTGATCATTATTTGCCGACG............................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0
....................................CCTGATCATTATTTGCCGACGTAT.........................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATTTTTGAAAGAT-TGGGCAAATAGATCGGTAAT-TCCTGATTATT-TTTGCCGACGTATTAAAAAATGATAGCAAGAAAGGGTGTGCGGACGTT--CTACGCTTTCTGTTTACGAAGCTGTAAAACTGTTGGGGGTC--CTGTGAAAAACGTATC*CGGAGGAGAGCCATACTGACTTAGTATCG------------------------------------GGTATAACC---------TT-AGA---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................AGCTGTAAAACTGTTGGGGGT............................................................................................................................................................................	21	2	1.00	2	0	0	0	0	2	0
........................................................................................................................GTAAAACTGTTGGGGGTC--CT.......................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1

droWil2

CGACTGAAAGAAT-TTAGCAAACAGATCTGCAATATCTTAATTATTATTACCAGTCTGGTCATTAAGTCTGAAGGTGGAAGGTAGTACATTAGAG--CGTCTTTTGGAATTAACAAAGTTGTAAAATCTGTTGGGATT--CTTATAAAATTCAACCTTACAGCGAAC-GATATAATTATTGTATTGT--------------------------------------GTATTT------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................TAAAATTCAACCTTACAGCGAAC-GATA.........................................................................................................................................	27	20	1.55	31	0	0	0	31	0
............................................................................................................................................................TTACAGCGAAC-GATATAATTATTGTAT.............................................................................................................................	27	2	0.50	1	0	0	0	1	0
...............................................................TAAGTCTGAAGGTGGAAGGTAGTAC.............................................................................................................................................................................................................................	25	20	0.40	8	0	0	0	8	0
............................................................................................................................................................TTACAGCGAAC-GATATAATTATTGTATA............................................................................................................................	28	3	0.33	1	0	0	0	1	0
........................................................TGGTCATTAAGTCTGAAGGTGGAAGG...................................................................................................................................................................................................................................	26	20	0.30	6	0	6	0	0	0
..........................................................................................TAGAG--CGTCTTTTGGAATTAACAAAGT..............................................................................................................................................................................................	27	20	0.30	6	0	6	0	0	0
..............................................................TTAAGTCTGAAGGTGGAAGGTAG................................................................................................................................................................................................................................	23	20	0.25	5	0	5	0	0	0
...............................................................TAAGTCTGAAGGTGGAAGGTAGTACAT...........................................................................................................................................................................................................................	27	20	0.20	4	0	1	0	3	0
..............................................................TTAAGTCTGAAGGTGGAAGGTAGTAC.............................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	4	0
...........................................................................TGGAAGGTAGTACATTAGAG--CGTCTTT.............................................................................................................................................................................................................	27	20	0.15	3	0	2	0	1	0
...........................................................TCATTAAGTCTGAAGGTGGAAGGTA.................................................................................................................................................................................................................................	25	20	0.15	3	0	1	0	2	0
...........................................................................TGGAAGGTAGTACATTAGAG--CGTCTT..............................................................................................................................................................................................................	26	20	0.10	2	0	0	0	2	0
...........................................................TCATTAAGTCTGAAGGTGGAAGGT..................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	2	0
..............................................................................................................................................TATAAAATTCAACCTTACAGCGAAC-G............................................................................................................................................	26	20	0.10	2	0	0	0	2	0
......................................................................................................................................................TCAACCTTACAGCGAAC-GATATAA......................................................................................................................................	24	20	0.10	2	0	0	0	2	0
.....................................................................TGAAGGTGGAAGGTAGTACATTAGA.......................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
.....................................................................................................................................................TTCAACCTTACAGCGAAC-GATATAAT.....................................................................................................................................	26	20	0.10	2	0	2	0	0	0
.............................................................................GAAGGTAGTACATTAGAG--CGT.................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
............................................................CATTAAGTCTGAAGGTGGAAGGTAG................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
.....................................................................TGAAGGTGGAAGGTAGTACATTAGAG--C...................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	2	0
...............................................................TAAGTCTGAAGGTGGAAGGTAGTACA............................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	2	0
....TGAAAGAAT-TTAGCAAACAGATCT........................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
...............................................................TAAGTCTGAAGGTGGAAGGTA.................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0
......................................................TCTGGTCATTAAGTCTGAAGGTGGAA.....................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
................................................................................GGTAGTACATTAGAG--CGTCTTTTGG..........................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...............................................................................AGGTAGTACATTAGAG--CGTCT...............................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
......................................................TCTGGTCATTAAGTCTGAAGGTG........................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
....................................................................CTGAAGGTGGAAGGTAGTACATTAGA.......................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................TTCAACCTTACAGCGAAC-GATATAA......................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.............................................................ATTAAGTCTGAAGGTGGAAGG...................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
............................................................................................................................................................TTACAGCGAAC-GATATAATTATTGTA..............................................................................................................................	26	20	0.05	1	0	0	0	1	0
......................................................................................................................................................TCAACCTTACAGCGAAC-GATATA.......................................................................................................................................	23	20	0.05	1	0	0	0	1	0
...........................................................TCATTAAGTCTGAAGGTGGAAGGTT.................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
............................................................................................................................................................TTACAGCGAAC-GATATAATTA...................................................................................................................................	21	20	0.05	1	0	0	0	1	0
......................................................................................................................................................TCAACCTTACAGCGAAC-GA...........................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.......................................................................................................TTGGAATTAACAAAGTTGTA..........................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1
.......................................................CTGGTCATTAAGTCTGAAGGTGGAAG....................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
............................................................................................................................................CTTATAAAATTCAACCTTACAGCGA................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..........AAT-TTAGCAAACAGATCTGC......................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
......................................................................GAAGGTGGAAGGTAGTACATTAGAG--C...................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0
......................................................................................................................................................TCAACCTTACAGCGAAC-GAT..........................................................................................................................................	20	20	0.05	1	0	0	0	1	0
........................................................................................................TGGAATTAACAAAGTTGTAAAATCT....................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................CTGAAGGTGGAAGGTAGTACATT..........................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.............................................................................................AG--CGTCTTTTGGAATTAACAA.................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
....TGAAAGAAT-TTAGCAAACAGA...........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................TAAAATTCAACCTTACAGCGAAC-GA...........................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................................................................................................ATTCAACCTTACAGCGAAC-GATATAAT.....................................................................................................................................	27	20	0.05	1	0	0	0	1	0
.............................................................................................AG--CGTCTTTTGGAATTAACAAAGTTG............................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0

droVir3

AGTTTGAAAA-AG-TTTGCGAACAGATCGGCTATGCCAGGATCAGTGTTCGCGCTCTCATCTACAAACTTAAACGAAGAAGGCAAAATAGATGTT--TTTCGTTTTGAATTGACAAAGTTAAATAATTGCTGGGGATT--ATGTGAAAATTGAAAGCGACAATGG------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................AGAAGGCAAAATAGATGTT--TTTCG...............................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................GACAAAGTTAAATAATTGCTGGGG..............................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TTGACAAAGTTAAATAATTGCTGGGGA.............................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TATGCCAGGATCAGTGTTCGCG................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................TTAAACGAAGAAGGCAAAATAGATG........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGATAGAAAA-AA-TCTGCAAATAGATCAGAGGAATCCTGGTCATTGCAAGTTTTTTCACCATCAAGTACAAATGAGGACGGCAAACCAAAAAAT--TTACTATTCAAGTTTACAAATGAGTAAAATTGTTTAGGATC--TCGAGCAAACTGATGTTTGCAACGTAT-AAGATAATTATC---------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................TTACAAATGAGTAAAATTGTTTAGGATC--.........................................................................................................................................................................	28	6	7.17	43	9	1	0	0	33	0
..............................................................................................................TTACAAATGAGTAAAATTGTTTAGGAT............................................................................................................................................................................	27	6	1.50	9	6	0	0	0	3	0
..............................................................................................................TTACAAATGAGTAAAATTGTTTAGG..............................................................................................................................................................................	25	6	1.33	8	8	0	0	0	0	0
..............................................................................................................TTACAAATGAGTAAAATTGTTTAGGA.............................................................................................................................................................................	26	6	0.33	2	2	0	0	0	0	0
.............................................................................................................TTTACAAATGAGTAAAATTGTTTAGGATC--.........................................................................................................................................................................	29	6	0.33	2	1	0	0	0	1	0
...................................TCCTGGTCATTGCAAGTTTTTTCACC........................................................................................................................................................................................................................................................	26	17	0.29	5	1	0	0	0	4	0
...............................................................................................................TACAAATGAGTAAAATTGTTTAGGATC--.........................................................................................................................................................................	27	6	0.17	1	1	0	0	0	0	0
.............................................................................................................TTTACAAATGAGTAAAATTGTTTAGGAT............................................................................................................................................................................	28	6	0.17	1	1	0	0	0	0	0
...............................................................................................................TACAAATGAGTAAAATTGTTTA................................................................................................................................................................................	22	7	0.14	1	1	0	0	0	0	0
..............................................................................................................TTACAAATGAGTAAAATTGTTTAGGATA--.........................................................................................................................................................................	28	7	0.14	1	0	0	0	0	0	1
......................................................................................................................GAGTAAAATTGTTTAGGATC--.........................................................................................................................................................................	20	8	0.13	1	0	0	0	0	1	0
....................................................................................................................ATGAGTAAAATTGTTTAGGATC--.........................................................................................................................................................................	22	8	0.13	1	1	0	0	0	0	0
.................................AATCCTGGTCATTGCAAGTTTTTTCACC........................................................................................................................................................................................................................................................	28	17	0.12	2	1	0	0	0	1	0
..............................................................................................................TTACAAATGAGTAAAATTGTT..................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	1	0
..........................TCAGAGGAATCCTGGTCATTGCAAGTT................................................................................................................................................................................................................................................................	27	18	0.11	2	2	0	0	0	0	0
......................TAGATCAGAGGAATCCTGGT...........................................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
..........................TCAGAGGAATCCTGGTCATTGCAAGTTTT..............................................................................................................................................................................................................................................................	29	17	0.06	1	1	0	0	0	0	0
...................................TCCTGGTCATTGCAAGTTTTTTCAC.........................................................................................................................................................................................................................................................	25	18	0.06	1	1	0	0	0	0	0
..........................TCAGAGGAATCCTGGTCATTGCAAGTTT...............................................................................................................................................................................................................................................................	28	18	0.06	1	1	0	0	0	0	0
......................TAGATCAGAGGAATCCTGGTCATTGCA....................................................................................................................................................................................................................................................................	27	18	0.06	1	1	0	0	0	0	0
..................CAAATAGATCAGAGGAATCCT..............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..........................................CATTGCAAGTTTTTTCACC........................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.............................GAGGAATCCTGGTCATTGCAAGTTT...............................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
..........................TCAGAGGAATCCTGGTCATTGCAAGC.................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
.......................AGATCAGAGGAATCCTGGTCATTG......................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
............................AGAGGAATCCTGGTCATTGCAAGTT................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
..........................TCAGAGGAATCCTGGTCATTGCAAGT.................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
......................TAGATCAGAGGAATCCTGGTC..........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
..........................TCAGAGGAATCCTGGTCATTGCAAG..................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0

droGri2

AGATTGTAAATAT-TCAGCAAACAAATCGGCTGCATCCTGATCATTTTTTACTTTCGTATCTTCATGAA-AAACGGAGTTTGTTAAC--GACGAT--TTGCATTTCATATTCACGAAGTCACAGAACTGCCTGGGATC--CTTTGCAAATTGCAGCCTACATCGAAG-AAGGTTATTAT----------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_3374

scaffold_13499:1566313-1566463 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads