dan_3373

Name	Class	Family	Strand
Bilbo	LINE	LOA	+
Hoana8	DNA	hAT-hobo	-

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGTGTCGCCACATAGCGGACTGCGACTCAACCGCAAGGGTATATAAACTTCGGCTAAAGGAAAGTTAGCTTTCCTTTCTTGTTTACAACAGTCCGTCGCCAGTCCGTCGTAGGAAGGTGTAGGTTATACCTCCGCAACATTGTAAGGATCTGGGTTGGCTCCTATATAGAGGCCGGGATCCATATCCTTGCTCTAGGCCAGATCAACGCAACAAGCTTGCCGCCCTCATAGACCTCATCCAGTTCTTCTAC ************************************************.(((((((((((((....))))))))).(((((...)))))..((.((......)).))..(((.((((((...)))))))))........((((((((.((((((((((.((....)).))))..)))))).))))))))....))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V055 head	V039 embryo
................................................................................................................CAAGGTGTAGCTTATACC.........................................................................................................................	18	2	9	0.33	3	2	0	0	1
..............................................................................................................................................TAAGGATCTGGGTTGGGTGC.........................................................................................	20	2	3	0.33	1	0	0	1	0
........CACATAGCGGACTGCGACTCAACCGCA........................................................................................................................................................................................................................	27	0	3	0.33	1	0	1	0	0
...GTCGCCACATAGAGGACTGCG...................................................................................................................................................................................................................................	21	1	5	0.20	1	0	1	0	0
...............................................................................................................TGAAGGTGTAGCTTATACC.........................................................................................................................	19	2	6	0.17	1	1	0	0	0
................................................................................................................................................................................................CTAGGCCAGATCAACGCAACAAGCC..................................	25	1	6	0.17	1	1	0	0	0
..........................................................................TTTCTTGTTTACAACAGTCCGTCGCC.......................................................................................................................................................	26	0	6	0.17	1	1	0	0	0
................................................................................................................CAAGGTGTAGCTTATACCACC......................................................................................................................	21	3	7	0.14	1	1	0	0	0
..................................................................................................................................................GGTCAGGGTTGGCTCCTA.......................................................................................	18	2	7	0.14	1	0	0	1	0
............................................................................................................................................TGTAAGGTGCAGGGTTGGCT...........................................................................................	20	3	8	0.13	1	0	0	0	1
.......................................................................................ACCGTCCGTCGCCAGGCC..................................................................................................................................................	18	2	9	0.11	1	0	1	0	0
.......................................................................................ACCGTCCGACGCCAGGCCGTC...............................................................................................................................................	21	3	9	0.11	1	0	1	0	0
..................................................CGGCTGGAAGAAAGTTAGCT.....................................................................................................................................................................................	20	3	15	0.07	1	1	0	0	0
................................................................................................................CAAGGTGTAGCTTATACCC........................................................................................................................	19	3	17	0.06	1	1	0	0	0
..................................................................................................................AGCTGTAGCTTATACCACC......................................................................................................................	19	3	18	0.06	1	1	0	0	0
.................................CAAGGGTATATCAACTTCGGCTAA..................................................................................................................................................................................................	24	1	20	0.05	1	1	0	0	0

GCACAGCGGTGTATCGCCTGACGCTGAGTTGGCGTTCCCATATATTTGAAGCCGATTTCCTTTCAATCGAAAGGAAAGAACAAATGTTGTCAGGCAGCGGTCAGGCAGCATCCTTCCACATCCAATATGGAGGCGTTGTAACATTCCTAGACCCAACCGAGGATATATCTCCGGCCCTAGGTATAGGAACGAGATCCGGTCTAGTTGCGTTGTTCGAACGGCGGGAGTATCTGGAGTAGGTCAAGAAGATG ************************************************.(((((((((((((....))))))))).(((((...)))))..((.((......)).))..(((.((((((...)))))))))........((((((((.((((((((((.((....)).))))..)))))).))))))))....))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V039 embryo	V055 head	V106 head
..................................................GCCGACCTTCTTTCAATCGA.....................................................................................................................................................................................	20	3	15	3.00	45	37	8	0	0	0
.................................................................................AAATGTTGTCAGGCAGCGGTCAG...................................................................................................................................................	23	0	6	0.17	1	1	0	0	0	0
..............CGCCTGGCGCTGAGTTGGCGTTCCCA...................................................................................................................................................................................................................	26	1	7	0.14	1	0	0	0	0	1
.....................................................................................GCTGTCAGGCAGCGGGGAGG..................................................................................................................................................	20	3	9	0.11	1	0	0	0	1	0
.......GGTGTATCGCCTGACGCTGAGTT.............................................................................................................................................................................................................................	23	0	19	0.11	2	1	0	1	0	0
.......GGTGTTTCGCCTGACGCTGAGTT.............................................................................................................................................................................................................................	23	1	20	0.10	2	0	0	2	0	0
...................GACGCTGAGTTGGCGTTCCCGT..................................................................................................................................................................................................................	22	1	10	0.10	1	1	0	0	0	0
......CGGTGTATCGCCTGACGCTGAGTT.............................................................................................................................................................................................................................	24	0	19	0.05	1	0	0	1	0	0
......CGGTGTATCCCCTGACGCTGAGTT.............................................................................................................................................................................................................................	24	1	20	0.05	1	0	0	1	0	0
.......GGTGTATCGCCTGACACTGAGTT.............................................................................................................................................................................................................................	23	1	20	0.05	1	0	0	1	0	0
.......GGTGTGCCGCCTGACGCTGAGTT.............................................................................................................................................................................................................................	23	2	20	0.05	1	0	0	1	0	0
......CGGTGTATCGCCTGACGCTGAGT..............................................................................................................................................................................................................................	23	0	20	0.05	1	0	0	1	0	0
.........................................................................................TCAGGCAGCTGACAGGC.................................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13499:1451556-1451806 -	dan_3373	CGTGTCGCCACATAGCGGACT-G---------------------------------CGACTCAACCGCAAGGGTATATAAACTTCGGCTA-A-AGGAAAGTTAGCTT-----------------------TC-CTTTCTTGT---TTACAACAGTCCGTCGCCAGTCCGTC---GTAGGAAGGTGTAGGTTATACC----------TCCGCAACATTGTA-AGGATCTGGGTTGGCTCCTATATAGAGGCCGGGA----TCCATATCCTTGCTCTAGGC------------------CAGATCAACGCAACAAGCTTGCCGCCCTCATAGACCTCATCCAGTTCTTCTA-C
droBip1	scf7180000396107:11701-11856 -		CG---------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTCCGTT---GTGGGAAAGTGAGGCTTACATC----------GCTGGAGCATTGTA-AGGATTTGGCCTCGTTCCTTAATGGAAGCCGGAA----TCTATATCGTT-----------------GACGTCCCGCCAGCTTAGCGCAACGAGCTTGGGGCCCTCGTAGACCTCTCCGAGTTCTTGTA-C
droKik1	scf7180000302389:112672-112784 +		AATATAATGAAATA--------------------------------------------A--TATCTGCAAGGGTATACAAACTTCGGCGT-G-CCG-AAGTTAGCTT------------------------C-CTTTCTTGT---TTTAAAAA-------------------------------TTTAATTGATT-----------------------------------------TC----ATCT-------------------------------------CAGAAATGTCTTATAGGTC------------------------------------------------A
droFic1	scf7180000453910:796183-796393 +		TGGAAAATTAA-TAGAAAAGTCGTCGTAGCTTCGATGTTGTTCTGTTCAAAATATTTGA--TGACTGCAAGGGTATATAAGCTTCGGCTT-G-CCG-AAGCTAGCTT------------------------C-CTTTCTTGT---TCG--------GTCA-TCAAATA--GGTCGAAAGAGGGTA-AAGTCAAAAG----------TTTGCAATGCAGTGAAGGAGATTCCTCAGACCCCATAAAG-------TAAAGGTATATATTCTTG----------------------------------------------------------------------------AT-C
droEle1	scf7180000489566:927-1116 -		CCCT---------------------------------------------------------------------------------------------------------------------------------------------TCACTTTTACGACCTTCCAGTCGTGC---TTGGGAAGATGTGGGTTGCACC----------TTTGCAGCATGAAG-AGGATGTCCTTTGGGGTCTTAATCGTGAACGTCA----ACCAGATCCTCGCTCGTGGTCTACAGGGGACGTCACACCAGTCAAGTGCGACGATTTTTGTCCAATCGTAAACTG-TTCAAGCTGCGCTG-T
droRho1	scf7180000776002:3225-3406 +		TAATTTACAGAGTA-----T-------------------------------------------TCTGCAAGGGTATATCAACTTCGGCTCCGCCCG-AAGTTAGCTT-----------------------TC-CTTTCTTGT---TATA-CC-------C----GTTACTCGTAGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACAGGTAGAAGGAAGTGTTTCCGACCCTATAAAG-------TA----TATATATTCTTGTTCAGGA---------------------------------------------------------------------TC-A
droBia1	scf7180000301382:5521-5677 -		TTGCTTGTT-----------------------------------------------------------------------------------------------------------------TAC-----A----------------------TCCTCTTTCCAGTCTTTC---GTAGAGAAATGCGGATTGCAT---------------------------------------------TCATCGCAGCTGGGA----GCCAGATCCGAGCTCGGGGCCTGCTGAGAACGTCACACCAGTCGAGTGCCACAATGT-TTCCCTTTCATAGACTTTGCCAAGTTTGCTTG-C
droTak1	scf7180000415879:37823-38070 +		ATATGCA--------------------------------------------------------------------------CTCCGCTAA-A-ACCGAAGTTCATTCAACTGACTCCTTGTTCAGGACCATA--------ACCGTCCACCTTGACGACTCTCCAGTCCTTC---GTGGGGAGGTGCGGATTGCAAA----------CTTGCAGCATATAG-AGGATGTCCTCCGGGGCCTTCATAGTTGCTGGGA----GCCAGATCCGGACTCGGGGCCTACTAGGGACATCGCACCAGTCAAGTGCGACAATATTCGCCCCCTCGTAGACCGCACCGAGATTACTTG-C
droYak3	v2_chrUn_001:69908-70090 +		GTTGGT---------------------------------------------------------------------------------------------------CC-----------------------CT-CCATTTTGT---CGACTCTCACCACTCGCCAGTCCGAG---GTGGGAAGGTGCGGGTTGCAGC----------GCTGCAGCATGGTG-AGGATCTGGTCCGGCGTCTTGATGGATGCCGGGA----ACCAGATCCTTGC-----------------------TCCAGCACAGCGCAACAAGTCCGGCGCCTTCATACACCTCCCCCAACTCTTTTA-C
dp5	Unknown_group_134:16518-16688 -		CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCGAT---GTTGGGAGGTGGGGGTTGCATC----------TTTGCAGCATTTTA-AGGATGCGTTCCGGCTCCTTCATGGAGGCGGGCA----CCCAGACTCTCGCCCTTGCTCTACTTGGCACTTCTCTCCAGTCTACTGCGACGAGCTTCGCCCCTGGGTAGACTTGCCCTACTTGCGCTA-C
droPer2	scaffold_64:139192-139362 -		CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCGCT---GTTGGGAGGTGGGGGTTGCATC----------TTTGCAGCATTTTT-AGGATGCGCTCCGGCTCCTTCATGGAGGCGGGCA----CCCAGACCCTCGCCCTTGGTCTACTGGGCACTTCGCTCCAGTCAACAGGGACGAGCTTCGCCCCTGGGTAGACTTCCCCGACTTGCGCTA-C
droWil2	scf2_1100000004963:4364217-4364325 -		AAGT-------------------------------------------------------------TGCAAGGGTATTTAAACTCTGACGC-G-GTGAAAGTTAGCCC-----------------------CGGCCTTCTGGT---TTTA-TC-------A-TCATTT-----------------------------------------------------------------CGTGGCTTGAATGACTGTAGGAG----TCCATGTCTCGGC---------------------------------------------------------------------------TACA
droVir3	scaffold_13047:17380208-17380372 -		CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCTTTG---GTATGTAGAATTGGGTTGCGTC----------------GCATTGTC-ATTATGTGCTCTGGCTCTATTATGGACGAAGGTG----ACCACAACCGGGGGCAGGGTTTGACTGGAACCTTGATCCAATCTACCGCAACCAAATTGGCGCCAGGGTAGATCTCTCCGATATTTTCGA-T
droMoj3	scaffold_6540:23749942-23750112 -		CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGTTT---GTCGGCAAGTTCGGGTTGAATC----------TTGTTAGCAATTCG-AGAATGTCATTGGACTCGGATGGCGTTTCCGGTA----GCCAAGCTGTAGCCCAAGGACGCGATGGTATGTCCTGCACATCAATCACTTCTAACTGAGCTCCTGGGTATACTTCGCCAATCTTGGCAA-T
droGri2	scaffold_5575:1036-1248 +		GAAGTT-----------------------------------------------------------------------------------------------TAGCTC-----------------------GC-CCTTGGTGGCCTCAATCTTCACCACCCTTCAGTCATGG---GTGGGAAGAGAGGGGTTGCATA----------GTAGCAAGAGATTA-AGCACCTGGTCCGGTTCCTTTAAGGAGGCCGGTA----TCCAGATGCGTGCACGAGGTCTACTCGGGACTTCGCTCCAGTCGTTAGCGACCAGCTTCGCCCCGGGATAGATCTCACCAAGCTCTGCTA-C

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CGTGTCGCCACATAGCGGACT-G---------------------------------CGACTCAACCGCAAGGGTATATAAACTTCGGCTA-A-AGGAAAGTTAGCTT-----------------------TC-CTTTCTTGT---TTACAACAGTCCGTCGCCAGTCCGTC---GTAGGAAGGTGTAGGTTATACC----------TCCGCAACATTGTA-AGGATCTGGGTTGGCTCCTATATAGAGGCCGGGA----TCCATATCCTTGCTCTAGGC------------------CAGATCAACGCAACAAGCTTGCCGCCCTCATAGACCTCATCCAGTTCTTCTA-C	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........CACATAGCGGACT-G---------------------------------CGACTCAACCGCA..........................................................................................................................................................................................................................................................................................	27	3	0.33	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CTAGGC------------------CAGATCAACGCAACAAGCC...................................	25	6	0.17	1	0	1	0	0	0	0
......................................................................................................................................TTTCTTGT---TTACAACAGTCCGTCGCC............................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0

droBip1

CG---------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTCCGTT---GTGGGAAAGTGAGGCTTACATC----------GCTGGAGCATTGTA-AGGATTTGGCCTCGTTCCTTAATGGAAGCCGGAA----TCTATATCGTT-----------------GACGTCCCGCCAGCTTAGCGCAACGAGCTTGGGGCCCTCGTAGACCTCTCCGAGTTCTTGTA-C	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AATATAATGAAATA--------------------------------------------A--TATCTGCAAGGGTATACAAACTTCGGCGT-G-CCG-AAGTTAGCTT------------------------C-CTTTCTTGT---TTTAAAAA-------------------------------TTTAATTGATT-----------------------------------------TC----ATCT-------------------------------------CAGAAATGTCTTATAGGTC------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGGAAAATTAA-TAGAAAAGTCGTCGTAGCTTCGATGTTGTTCTGTTCAAAATATTTGA--TGACTGCAAGGGTATATAAGCTTCGGCTT-G-CCG-AAGCTAGCTT------------------------C-CTTTCTTGT---TCG--------GTCA-TCAAATA--GGTCGAAAGAGGGTA-AAGTCAAAAG----------TTTGCAATGCAGTGAAGGAGATTCCTCAGACCCCATAAAG-------TAAAGGTATATATTCTTG----------------------------------------------------------------------------AT-C	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCCT---------------------------------------------------------------------------------------------------------------------------------------------TCACTTTTACGACCTTCCAGTCGTGC---TTGGGAAGATGTGGGTTGCACC----------TTTGCAGCATGAAG-AGGATGTCCTTTGGGGTCTTAATCGTGAACGTCA----ACCAGATCCTCGCTCGTGGTCTACAGGGGACGTCACACCAGTCAAGTGCGACGATTTTTGTCCAATCGTAAACTG-TTCAAGCTGCGCTG-T	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TAATTTACAGAGTA-----T-------------------------------------------TCTGCAAGGGTATATCAACTTCGGCTCCGCCCG-AAGTTAGCTT-----------------------TC-CTTTCTTGT---TATA-CC-------C----GTTACTCGTAGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACAGGTAGAAGGAAGTGTTTCCGACCCTATAAAG-------TA----TATATATTCTTGTTCAGGA---------------------------------------------------------------------TC-A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTGCTTGTT-----------------------------------------------------------------------------------------------------------------TAC-----A----------------------TCCTCTTTCCAGTCTTTC---GTAGAGAAATGCGGATTGCAT---------------------------------------------TCATCGCAGCTGGGA----GCCAGATCCGAGCTCGGGGCCTGCTGAGAACGTCACACCAGTCGAGTGCCACAATGT-TTCCCTTTCATAGACTTTGCCAAGTTTGCTTG-C	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATATGCA--------------------------------------------------------------------------CTCCGCTAA-A-ACCGAAGTTCATTCAACTGACTCCTTGTTCAGGACCATA--------ACCGTCCACCTTGACGACTCTCCAGTCCTTC---GTGGGGAGGTGCGGATTGCAAA----------CTTGCAGCATATAG-AGGATGTCCTCCGGGGCCTTCATAGTTGCTGGGA----GCCAGATCCGGACTCGGGGCCTACTAGGGACATCGCACCAGTCAAGTGCGACAATATTCGCCCCCTCGTAGACCGCACCGAGATTACTTG-C	Size	Hit Count	Total Norm	Total
No Reads

droYak3

GTTGGT---------------------------------------------------------------------------------------------------CC-----------------------CT-CCATTTTGT---CGACTCTCACCACTCGCCAGTCCGAG---GTGGGAAGGTGCGGGTTGCAGC----------GCTGCAGCATGGTG-AGGATCTGGTCCGGCGTCTTGATGGATGCCGGGA----ACCAGATCCTTGC-----------------------TCCAGCACAGCGCAACAAGTCCGGCGCCTTCATACACCTCCCCCAACTCTTTTA-C	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................AACAAGTCCGGCGCCTTCATACACC..................	25	4	3.25	13	0	13	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TCTCACCACTCGCCAGTCCGAG---GTG..............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGCGGGTTGCAGC----------GCTGCAGCATGG.....................................................................................................................................	25	11	0.55	6	0	5	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................TGCAGC----------GCTGCAGCATGGTG-AGGATC............................................................................................................................	26	14	0.43	6	0	3	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCATGGTG-AGGATCTGGTCCGGCG..................................................................................................................	24	17	0.41	7	0	5	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................................................GCATGGTG-AGGATCTGGTC.......................................................................................................................	19	20	0.40	8	0	0	0	0	0	0	0	0	0	0	8
.......................................................................................................................................................TCACCACTCGCCAGTCCGAG---GTGGGA...........................................................................................................................................................................	26	20	0.40	8	0	2	0	0	0	0	0	0	0	0	6
........................................................................................................................................................CACCACTCGCCAGTCCGAG---GTGGGA...........................................................................................................................................................................	25	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7
....................................................................................................................................................................................................................GCATGGTG-AGGATCTGGTCCGG....................................................................................................................	22	20	0.30	6	0	5	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCATGGTG-AGGATCTGGTCCGGC...................................................................................................................	23	18	0.28	5	0	3	1	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................TGCAGC----------GCTGCAGCATGGTG-AGGA..............................................................................................................................	24	15	0.27	4	0	4	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AACAAGTCCGGCGCCTTCATACACCTC................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AACAAGTCCGGCGCCTTCATACA....................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ACAAGTCCGGCGCCTTCATACACC..................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AACAAGTCCGGCGCCTTCATACACCTCC...............	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TCGCCAGTCCGAG---GTGGGAAGGTG......................................................................................................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGCAGC----------GCTGCAGCATGGTG-AGGAT.............................................................................................................................	25	15	0.20	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGCGGGTTGCAGC----------GCTGCAGCATG......................................................................................................................................	24	11	0.18	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCCGAG---GTGGGAAGGTGCGGGTTGCA.............................................................................................................................................................	26	17	0.18	3	0	3	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCCGAG---GTGGGAAGGTGCGGGTTGC..............................................................................................................................................................	25	18	0.17	3	0	1	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCACCACTCGCCAGTCCGAG---GTGGG............................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TCGCCAGTCCGAG---GTGGGAAGG........................................................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGCAGCATGGTG-AGGATCTGGTCCGG....................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................CACTCGCCAGTCCGAG---GTGGGAAGGT.......................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
.......................................................................................................................................................................................TGCGGGTTGCAGC----------GCTGCAGCATGGTG-..................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CAGCATGGTG-AGGATCTGGTCCGGC...................................................................................................................	25	18	0.11	2	0	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGCAGCATGGTG-AGGATCTGGTCCG.....................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GCGGGTTGCAGC----------GCTGCAGCATGGTT-..................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGCGGGTTGCAGC----------GCTGCAGCATGGT....................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCATGGTG-AGGATCTGGTCC......................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCACCACTCGCCAGTCCGAG---GT...............................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................GCCAGTCCGAG---GTGGGAAGGTGC.....................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................C----------GCTGCAGCATGGTG-AGGATCTGG.........................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GCGGGTTGCAGC----------GCTGCAGCATG......................................................................................................................................	23	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AGC----------GCTGCAGCATGGTG-AGGATCTGG.........................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GCAGC----------GCTGCAGCATGGTG-AGGA..............................................................................................................................	23	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGCAGC----------GCTGCAGCATGGTG-AGG...............................................................................................................................	23	15	0.07	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGCAGC----------GCTGCAGCATGGTG-A.................................................................................................................................	21	16	0.06	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CATGGTG-AGGATCTGGTCCGGCG..................................................................................................................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGCAGCATGGTG-AGGATCTGGTCCGGC...................................................................................................................	27	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCCGAG---GTGGGAAGGTGCGGGTTG...............................................................................................................................................................	24	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GCTGCAGCATGGTG-AGGATCTGGTCCG.....................................................................................................................	27	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCCGAG---GTGGGAAGGTGCGGGTTC...............................................................................................................................................................	24	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCCGAG---GTGGGAAGGTGCG....................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAGTCCGAG---GTGGGAAGGTGC.....................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................TCCGAG---GTGGGAAGGTGCGGGT.................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................TGCAGCATGGTG-AGGATCTGGTCC......................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................CACCACTCGCCAGTCCGAG---GTGGG............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCATGGTG-AGGATCTGGTCCG.....................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................ACCACTCGCCAGTCCGAG---GTGGGA...........................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TCGCCAGTCCGAG---GTGGGA...........................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCACCACTCGCCAGTCCGAG---GTGGGAAGG........................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................GTCCGAG---GTGGGAAGGTGCGG...................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCACCACTCGCCAGTCCGAG---G................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TCGCCAGTCCGAG---GTGGGAAGGTGCGG...................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GCAGCATGGTG-AGGATCTGGTCC......................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

dp5

CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCGAT---GTTGGGAGGTGGGGGTTGCATC----------TTTGCAGCATTTTA-AGGATGCGTTCCGGCTCCTTCATGGAGGCGGGCA----CCCAGACTCTCGCCCTTGCTCTACTTGGCACTTCTCTCCAGTCTACTGCGACGAGCTTCGCCCCTGGGTAGACTTGCCCTACTTGCGCTA-C	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................CAGTCTACTGCGACGAGCTTCGCCCC............................	26	1	18.00	18	0	17	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................CAGTCTACTGCGACGAGCTTCGCCC.............................	25	1	12.00	12	0	11	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................CAGTCTACTGCGACGAGCTTCGCC..............................	24	1	4.00	4	0	3	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................CAGTCTACTGCGACGAGCTTCGC...............................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................TGGGGGTTGCATC----------TTTGCAGC.........................................................................................................................................	21	5	1.60	8	0	8	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTCTCGC...............................................................................	25	7	1.57	11	0	9	0	0	0	0	0	1	1	0
.........................................................................................................................................................................................................................TTA-AGGATGCGTTCCGGCTCCTTCT............................................................................................................	25	2	1.50	3	0	0	0	0	0	0	0	3	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTCTCG................................................................................	24	7	1.29	9	0	5	0	0	0	0	0	0	4	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTCTCGCC..............................................................................	26	7	1.29	9	0	9	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TCGCCCTTGCTCTACTTGGCACTT...........................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................CTCCAGTCTACTGCGACGAGCTTCGCCCC............................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GCA----CCCAGACTCTCGCCCTTGCTCT......................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTA-AGGATGCGTTCCGGCTCCTTCA............................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	2	0	0
.................................................................................................................................................................................................................................................................................................................TGCGACGAGCTTCGCCCCTGGGTAGA....................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TCCAGTCTACTGCGACGAGCTTCGCCCC............................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CAGTCTACTGCGACGAGCTTCGT...............................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................TCATGGAGGCGGGCA----CCCAGACTC...................................................................................	24	7	0.86	6	0	6	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GAGCTTCGCCCCTGGGTAGACTT.................	23	7	0.86	6	0	5	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................GGAGGCGGGCA----CCCAGACTCTCGC...............................................................................	24	8	0.75	6	0	5	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GGAGGCGGGCA----CCCAGACTCTCGCCC.............................................................................	26	8	0.63	5	0	4	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GGCGGGCA----CCCAGACTCTCGCCCTTG..........................................................................	26	9	0.56	5	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................AGGATGCGTTCCGGCTCCTTCATGG.........................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCCGAT---GTTGGGAGGTGG.....................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0
CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCGAT---GTTGGGAGGTGGG....................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.C-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCCGAT---GTTGGGAGGTG......................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGCAGCATTTTA-AGGATGCGTTCCGGC...................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................A-AGGATGCGTTCCGGCTCCTTCA............................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GGAGGCGGGCA----CCCAGACTCTCGCC..............................................................................	25	8	0.50	4	0	3	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GGCGGGCA----CCCAGACTCTCGCCC.............................................................................	23	9	0.44	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CGGGCA----CCCAGACTCTCGCCCTTG..........................................................................	24	9	0.44	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GGCGGGCA----CCCAGACTCTCGCC..............................................................................	22	9	0.44	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTTGGGAGGTGGGGGTTGC..............................................................................................................................................................	19	14	0.43	6	0	5	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTCTCGCCC.............................................................................	27	7	0.43	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGGGGTTGCATC----------TTTGCAGCATT......................................................................................................................................	24	5	0.40	2	0	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GGCGGGCA----CCCAGACTCTCGCCCT............................................................................	24	9	0.33	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GAGGCGGGCA----CCCAGACTCTCGCCC.............................................................................	25	9	0.33	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCCGAT---GTTGGGAGGTGGA....................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GAGGCGGGCA----CCCAGACTCTCGCC..............................................................................	24	9	0.33	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................A----CCCAGACTCTCGCCCTTG..........................................................................	19	9	0.33	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTTGGGAGGTGGGGGTTG...............................................................................................................................................................	18	16	0.31	5	0	5	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TCCTTCATGGAGGCGGGCA----C...........................................................................................	20	10	0.30	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TCCTTCATGGAGGCGGGCA----CCCAG.......................................................................................	24	10	0.30	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TCATGGAGGCGGGCA----CCCAGACT....................................................................................	23	7	0.29	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTCTC.................................................................................	23	7	0.29	2	0	1	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................GAGCTTCGCCCCTGGGTAGACT..................	22	7	0.29	2	0	1	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................GACGAGCTTCGCCCCTGGGTA......................	21	8	0.25	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................TCATGGAGGCGGGCA----CCCAGA......................................................................................	21	9	0.22	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AGGTGGGGGTTGCATC----------TTTGC............................................................................................................................................	21	9	0.22	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACA....................................................................................	20	9	0.22	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGGGAGGTGGGGGTTGC..............................................................................................................................................................	18	14	0.21	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTTGGGAGGTGGGGGTTGCA.............................................................................................................................................................	20	14	0.21	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGGGGTTGCATC----------TTTGCAGCATTT.....................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGGGGTTGCATC----------TTTGCAGCA........................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GAGGTGGGGGTTGCATC----------TTTGCAGT.........................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................GTGGGGGTTGCATC----------TTTGCAGCATTTT....................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AGGTGGGGGTTGCATC----------TTTGCAGCATTT.....................................................................................................................................	28	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TCCTTCATGGAGGCGGGCA----CC..........................................................................................	21	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGGGGTTGCATC----------TTTGCAG..........................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................T---GTTGGGAGGTGGGGGTTG...............................................................................................................................................................	19	15	0.20	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TCCTTCATGGAGGCGGGCA----CCCA........................................................................................	23	10	0.20	2	0	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................GGGGTTGCATC----------TTTGCAGCA........................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GGAGGCGGGCA----CCCAGACTTG..................................................................................	21	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGGGGGTTGCATC----------TTTGCAGT.........................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................GGGAGGTGGGGGTTGCATC----------TT...............................................................................................................................................	21	11	0.18	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGACGAGCTTCGCCCCTGGGTAGA....................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGACGAGCTTCGCCCCTGGGT.......................	21	6	0.17	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................CATGGAGGCGGGCA----CCCAGACT....................................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTCTCGT...............................................................................	25	7	0.14	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTCTCGCA..............................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TCCTTCATGGAGGCGGGCA----CCCAGACTC...................................................................................	28	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTCTCAA...............................................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GACGAGCTTCGCCCCTGGGTAGACT..................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTCTCGA...............................................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................T---GTTGGGAGGTGGGGGTTGT..............................................................................................................................................................	20	15	0.13	2	0	1	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................AGCTTCGCCCCTGGGTAGAC...................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ACGAGCTTCGCCCCTGGGTA......................	20	8	0.13	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................TCCTTCATGGAGGCGGGCA----CCCAGAC.....................................................................................	26	8	0.13	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CGAGCTTCGCCCCTGGGTAGAC...................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTCT..................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CGAGCTTCGCCCCTGGGTAG.....................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GACGAGCTTCGCCCCTGGGTAGAC...................	24	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GACGAGCTTCGCCCCTGGGTAGA....................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ACGAGCTTCGCCCCTGGGTAGAC...................	23	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GGAGGCGGGCA----CCCAGACTCTC.................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GGCGGGCA----CCCAGACTCTCGC...............................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AGGCGGGCA----CCCAGACTCTCGCC..............................................................................	23	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................CATGGAGGCGGGCA----CCCAGA......................................................................................	20	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GGCGGGCA----CCCAGACTCTCGCCCTT...........................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACTTG..................................................................................	22	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................CCCAGACTCTCGCCCTTG..........................................................................	18	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GAGGCGGGCA----CCCAGACTCTCGCCCT............................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGGAGGCGGGCA----CCCAGACAA...................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AGGCGGGCA----CCCAGACTCTCGCCC.............................................................................	24	9	0.11	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GCGGGCA----CCCAGACTCTCGCCCTTG..........................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AGGTGGGGGTTGCATC----------TTTG.............................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TTCATGGAGGCGGGCA----CCCAGAT.....................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TCCGGCTCCTTCATGGAGGCGGGCA----C...........................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TTCATGGAGGCGGGCA----AAA.........................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.................................................................................................................................................................................GGGAGGTGGGGGTTGCATC----------T................................................................................................................................................	20	11	0.09	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TCCGGCTCCTTCATGGAAA......................................................................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CTTCATGGAGGCGGGCA----TT..........................................................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................TGGGAGGTGGGGGTTGCATC----------.................................................................................................................................................	20	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTTGGGAGGTGGGGGTTGCAT............................................................................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................T---GTTGGGAGGTGGGGGTTGCA.............................................................................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GGGAGGTGGGGGTTGCATC----------.................................................................................................................................................	19	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................T---GTTGGGAGGTGGGGGTTT...............................................................................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................T---GTTGGGAGGTGGGGGTT................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTTGGGAGGTGGGGGTTT...............................................................................................................................................................	18	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTTGGGAGGTGGGGGTTGTT.............................................................................................................................................................	20	19	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCGCT---GTTGGGAGGTGGGGGTTGCATC----------TTTGCAGCATTTTT-AGGATGCGCTCCGGCTCCTTCATGGAGGCGGGCA----CCCAGACCCTCGCCCTTGGTCTACTGGGCACTTCGCTCCAGTCAACAGGGACGAGCTTCGCCCCTGGGTAGACTTCCCCGACTTGCGCTA-C	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................TCCAGTCAACAGGGACGAGCTTCGC...............................	25	1	2.00	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TCCAGTCAACAGGGACGAGCTTCGCC..............................	26	1	2.00	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................A----CCCAGACCCTCGCCCTTGGTC.......................................................................	22	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................A----CCCAGACCCTCGCCCTTGGTT.......................................................................	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................CCAGTCAACAGGGACGAGCTTCGC...............................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TCCAGTCAACAGGGACGAGCTTCGCCC.............................	27	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................TTT-AGGATGCGCTCCGGCTCCTTC.............................................................................................................	24	20	0.40	8	0	8	0	0	0	0
.............................................................................................................................................................................................TTGCATC----------TTTGCAGCATTTTT-AGGA..............................................................................................................................	25	20	0.25	5	0	5	0	0	0	0
.........................................................................................................................................................................................................................TTT-AGGATGCGCTCCGGCTCCT...............................................................................................................	22	20	0.20	4	0	4	0	0	0	0
.........................................................................................................................................................................................................................TTT-AGGATGCGCTCCGGCTCCTTCA............................................................................................................	25	20	0.15	3	0	3	0	0	0	0
..........................................................................................................................................................................................................................TT-AGGATGCGCTCCGGCTCCTTCATGG.........................................................................................................	27	20	0.10	2	0	2	0	0	0	0
CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCGCT---GTTGGGAGGTG......................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................TTGGTCTACTGGGCACTTCGCT.......................................................	22	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TGGGTAGACTTCCCCGACTT........	20	20	0.05	1	0	1	0	0	0	0
.C-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCGCT---GTTGGGAGGTGGGG...................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCGCT---GTTGGGAGGTGG.....................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................TTT-AGGATGCGCTCCGGCTCCTTCAT...........................................................................................................	26	20	0.05	1	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................CTGGGTAGACTTCCCCGACTTG.......	22	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TAGACTTCCCCGACTTGCGC....	20	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................TTT-AGGATGCGCTCCGGCTCC................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TGGGTAGACTTCCCCGACTTGCGCT...	25	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................TTT-AGGATGCGCTCCGGCT..................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................CATTTTT-AGGATGCGCTCCGGC...................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................TT-AGGATGCGCTCCGGCTCCTTCA............................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................................TTTGCAGCATTTTT-AGGATGCGC.........................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................CTTGGTCTACTGGGCACTTCGCC.......................................................	23	20	0.05	1	1	0	0	0	0	0
CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCGCT---GTTGGGAG.........................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TGGGTAGACTTCCCCGACTTGCGCTA-.	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CGAGCTTCGCCCCTGGGTAGACTT.................	24	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TTCGCCCCTGGGTAGACTTCCCCGACT.........	27	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................GCGCTCCGGCTCCTTCATGGAGGCGG...................................................................................................	26	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................CCTTGGTCTACTGGGCACTTCGCTCCAG...................................................	28	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................TGCATC----------TTTGCAGCATTTTT-AGGATG............................................................................................................................	26	20	0.05	1	0	1	0	0	0	0

droWil2

AAGT-------------------------------------------------------------TGCAAGGGTATTTAAACTCTGACGC-G-GTGAAAGTTAGCCC-----------------------CGGCCTTCTGGT---TTTA-TC-------A-TCATTT-----------------------------------------------------------------CGTGGCTTGAATGACTGTAGGAG----TCCATGTCTCGGC---------------------------------------------------------------------------TACA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCTTTG---GTATGTAGAATTGGGTTGCGTC----------------GCATTGTC-ATTATGTGCTCTGGCTCTATTATGGACGAAGGTG----ACCACAACCGGGGGCAGGGTTTGACTGGAACCTTGATCCAATCTACCGCAACCAAATTGGCGCCAGGGTAGATCTCTCCGATATTTTCGA-T

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGTTT---GTCGGCAAGTTCGGGTTGAATC----------TTGTTAGCAATTCG-AGAATGTCATTGGACTCGGATGGCGTTTCCGGTA----GCCAAGCTGTAGCCCAAGGACGCGATGGTATGTCCTGCACATCAATCACTTCTAACTGAGCTCCTGGGTATACTTCGCCAATCTTGGCAA-T	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GAAGTT-----------------------------------------------------------------------------------------------TAGCTC-----------------------GC-CCTTGGTGGCCTCAATCTTCACCACCCTTCAGTCATGG---GTGGGAAGAGAGGGGTTGCATA----------GTAGCAAGAGATTA-AGCACCTGGTCCGGTTCCTTTAAGGAGGCCGGTA----TCCAGATGCGTGCACGAGGTCTACTCGGGACTTCGCTCCAGTCGTTAGCGACCAGCTTCGCCCCGGGATAGATCTCACCAAGCTCTGCTA-C	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_3373

scaffold_13499:1451606-1451756 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-47.9	-47.8	-47.5