dan_3370

CDS [Dana\GF20689-cds]; exon [dana_GLEANR_39:2]; CDS [Dana\GF20689-cds]; exon [dana_GLEANR_39:1]; intron [Dana\GF20689-in]

##################################################-------------------------------------------------------------------------------------------################################################## TCCCACAGAAACAAGGTCGTTCCGCCGATGTGCTGGAAAAGCATGATGACGTGAGCCAGAAAAAAGTGCATAACCCAGTAGAGCCAGATCTGGACATGGAGAAAAAGAACGAAAAGAAAAGTGGAACCCGATGACGTATAGGAAGAAGAAGCAAAAGATGCTGCGGAAAAGGAGAATATAGTACCACTGGA ************************************************(((..(((((......(((........)))........))))).)))............................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V105 male body	M058 embryo	V039 embryo	M044 female body	V106 head	V055 head
.........................................................................................................................................ATAGGATAAAGAAGCAAAA...................................	19	2	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................................................ATGAGAATATAGTACCACT...	19	1	3	0.33	1	0	1	0	0	0	0
............................................................................................................................................................GATGCTGCGGAAAAGGAGAATATA...........	24	0	3	0.33	1	1	0	0	0	0	0
..........................................ATGATGACGTGAGCCAGAAAAAAGT............................................................................................................................	25	0	3	0.33	1	1	0	0	0	0	0
.................................................................................................................................GATGACGTTTACGAAGAAGA..........................................	20	2	3	0.33	1	0	0	0	0	1	0
.......................................AGCATGATGACGTGAGCCAGAAAAAAG.............................................................................................................................	27	0	3	0.33	1	0	0	1	0	0	0
.........................................CATGATGACGTGAGCCAGA...................................................................................................................................	19	0	3	0.33	1	0	0	0	1	0	0
..........................................ATGATGACCTTACCCAGAAA.................................................................................................................................	20	3	8	0.13	1	0	1	0	0	0	0
..............................................................................................................GAAGAGGACAGTGGAACCC..............................................................	19	3	20	0.10	2	2	0	0	0	0	0
.........................................................................................................AGAACCAAAAGAAAAATGGA..................................................................	20	2	10	0.10	1	0	0	1	0	0	0
................................................................................................TGGAGAAAAAGAGGGAAAAG...........................................................................	20	2	12	0.08	1	1	0	0	0	0	0
....................................................................................................GAAAAAGAACGAAAAAAAAAGG.....................................................................	22	2	13	0.08	1	0	1	0	0	0	0
......................................................................................................AAAAGAACGAAAAGACTAG......................................................................	19	2	14	0.07	1	0	1	0	0	0	0
...............................................................................................................................................AGAGGAAGTAAAAGATGC..............................	18	2	16	0.06	1	0	0	0	0	0	1
......................................................................................................AAAAGAACGAGAAGAAAAGA.....................................................................	20	2	16	0.06	1	0	1	0	0	0	0
.................CGTGCCGCCAAGGTGCTGGA..........................................................................................................................................................	20	3	16	0.06	1	0	1	0	0	0	0
..............................................................................................................................................................TGCTACGGACAAGGGGAAT..............	19	3	17	0.06	1	0	0	0	1	0	0
........................................................................................................................................CATAGGAAGAAGGATCAAAA...................................	20	3	20	0.05	1	1	0	0	0	0	0
..........................GATGTGCTGGAAGGGCTTGA.................................................................................................................................................	20	3	20	0.05	1	1	0	0	0	0	0
..............................................................................................................GAAAAGAAAAGAGGACCC...............................................................	18	2	20	0.05	1	0	1	0	0	0	0
...................................................................................................AGAAAAAGAACTAAGAGAA.........................................................................	19	2	20	0.05	1	0	1	0	0	0	0

AGGGTGTCTTTGTTCCAGCAAGGCGGCTACACGACCTTTTCGTACTACTGCACTCGGTCTTTTTTCACGTATTGGGTCATCTCGGTCTAGACCTGTACCTCTTTTTCTTGCTTTTCTTTTCACCTTGGGCTACTGCATATCCTTCTTCTTCGTTTTCTACGACGCCTTTTCCTCTTATATCATGGTGACCT ************************************************(((..(((((......(((........)))........))))).)))............................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V055 head	V106 head
...................................................................................................................CTTTTCACCTTGGGCTACTGCATA....................................................	24	0	2	0.50	1	0	1	0	0
..............CCATCAAGGCTGCTAAACGAC............................................................................................................................................................	21	3	3	0.33	1	0	0	1	0
...............................................CTGCACTCGGTCTTTTTTCACGT.........................................................................................................................	23	0	3	0.33	1	1	0	0	0
..................................................................................................................................................................CGCCTTTTACTCTCAAATCA.........	20	3	7	0.14	1	1	0	0	0
.....................................................................................................................TTTCACCTTGGGTTAGTG........................................................	18	2	8	0.13	1	1	0	0	0
.....................................................................................................................TTTCACCTTGGGTTAGTGA.......................................................	19	3	20	0.05	1	1	0	0	0
.......................................................................TGGGGTAATGTCGGTCTAG.....................................................................................................	19	3	20	0.05	1	0	0	0	1
................AGCAAGGCGTCTACACCATC...........................................................................................................................................................	20	3	20	0.05	1	0	0	1	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13499:1229469-1229659 -	dan_3370	TCCCACAGAA---------------------------ACAAG------GTCGTTCCGC-------CGATGTGCTG-GAAAAG---------------------CATGATGACGT------------------GAGC----------CAGA----------------------------------------------------AAAAAGTGCATAACCCAGTAGAGCCAGATCTGGACATGGAGAAA-------A---AGA-------ACGAAAAGAAAAGTGGAACCCGATGACGTATAGGA------AGAAGAAGCAA---------------------A---A------------------------------------------------------------------GATGCTGCGGAAAAGGAGAATATAGTACCACTGGA----
droBip1	scf7180000396544:114417-114600 -		TTCCACAGCA---------------------------AGAAG------GTCGTTCTGG-------CAATGTGCCG-GAAAAG---------------------CATGATGACGT------------------GAAC----------CAGA----------------------------------------------------AAAAGAATCATAACCCAGTAGAGCCAGAT------GCAGATGTC-------G---AGA-------AAAAGAACGAC-GACGAACCCGAAGAGGAACTGGA------AGGTGAAGCGA---------------------A---A------------------------------------------------------------------GATCCTGCAGAAAAAGAGAATAGAGTGCCGCTGGA----
droKik1	scf7180000302441:900263-900470 -		AGCCGGAACACCACGGCGTGGAGCCTGTACCAGAGCCGGCTG------CCCGTTCGGG-------TGATGTTCAG----AAA---------------------GTGCCAT------TGCTG------AAACCCAAG----------CAGC----------------------------------------------------CAGAGGTTAAAAATGAACCCGAACCCGACTTTGAAGCTGAAGCA-------G---AGC-------TGCAAAAGATC-GATGAGCCCGAACCCGAGCAGGA------GGAGGTGCACA---------------------ATCCA------------------------------------------------------------------CAACCCGC---------------GCAACAGCCAGA----
droFic1	scf7180000454105:1110103-1110304 +		AGCCCGAGCA---------------------------GGCGG------GCCTTTCCGG-------CAACGTCCAG-CCCAGGAATCATGCTCCGCAGCCAGATAAGCCAGCTA--------------------AGCCAGTC--AAGCGGC----------------------------------------------------CA---------AAGCCAGAGGAGCCCGACTCCCAGGAGGATCCC-------GAGGAGC-------TGAAGAAGATC-GACGAGCCAGAGCCGGAGGACGAC---GAGGAGGCCCACG---------------------ATC---------------------------------------------------------------------------------AGGAGCCTGTCCAGCAGCCGCA----
droEle1	scf7180000491249:2566084-2566262 -		TGCCGGAACA---------------------------GGCTG------GTCTCTCCGG-------CGATATTGAG-CTG------------------GCAAAGATGCCAGCTCCAAGGGAA------AAACTCAAG----------AAAC----------------------------------------------------CAGAGGTGCGAAAGCCCGAGGAACCTGACTTCGAGGAGGATCCA-------G---AGC-------TGCAGAAGATC-GATGACCCGGAACCGGTGGACGA------GGAGGACCACA---------------------ATCC-----------------------------------------------------------------------------------------------TGCCCAG----
droRho1	scf7180000778681:14332-14500 +		TGCCCGAACA---------------------------GGCTG------GACTTTCCGG-------CGATGTCCAG-CAG------------------CCAAGGAAGCCAGTTCCCGAGGCA------AAAGTTAAG----------AAAC----------------------------------------------------CAGATGTGAAACAGTCAGAGGAACACGATCTTGAAGAGGATCCA-------G---AGC-------TGCAGAAGATC-GATGAGCCGGAGCCGGTGGGCGA------TG------------------------------------------------------------------------------------------------------------------------------AGCAGCCTCA----
droBia1	scf7180000302428:9576344-9576539 +		TGCCTGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGTTCAG-CCAAGG---------------------ATGCCAGCTCT------------------TAGA----------CAAC----------------------------------------------------CAGAGGCTAGGAAACCGCCGGAAGCCGACTTTGAAGAGGAGCCC-------G---AGC-------TGCAAAAGGTC-GATGAGCCGGAACCGGACGATCA------GGAGGTCCACA---------------------ACCCG------------------------------------------------------------------CGACCGGCGAACGATGAGCCGGAGCAGCAGCCCCA-AGA
droTak1	scf7180000415857:635220-635415 +		TGCCCGAAAA---------------------------TGCTG------GTCTCTCGGG-------AGATGTGCAG-CCCAGG---------------------TTACCGGCTAT------------------AAGG----------CAGC----------------------------------------------------CAGAGGTTAAAAAGGAACAGGAACCGGATTTTGAAGAGGATCCC-------G---AGC-------TGCAAAAGGTG-GATGAACCGGAACCAGGCGATGC------AGAGGTCCATA---------------------ATCCA------------------------------------------------------------------CGTCCAGCGGACGATGAACCCGCGCAGCAGCCACA-GGA
droEug1	scf7180000409466:512677-512881 +		TGCCCGAACA---------------------------GGCTG------GCCTTTCCGG-------CGATGTTCAG-CCTAAT---------------------ATTCCAGCTCCACAGCCT------AGACATAAG----------CAAC----------------------------------------------------CAAGCGCTAAAAAAGAAGTAGAACCAGATTTTGAAGCGGATCCG-------G---AGC-------TACAGAAGATC-GATGAGCCGGAACCGGAGAACGA------AGGGGTCCACA---------------------ATCCT------------------------------------------------------------------CGGTCTGCCGAAGATGAGCCTGGACAGCAGCCGCA----
dm3	chr3L:2783040-2783232 +		TGCCCGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGTCAAG-GTGAAG---------------------GTGCCAGCTAT------------------AAAG----------CAAC----------------------------------------------------CAGAACCTCAGAAACCACAGGAACCCGACTTCGAAGAGGATCCT-------G---AGC-------TGCAGAAGATC-GATGAGCCCGAACCGGTGGAGGA------AGAAGTCGATA---------------------ATCCG------------------------------------------------------------------CATCCGGCGGACGACGAACCGCAACAGCAGCCCCA----
droSim2	3l:2665769-2665961 +		TGCCCGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGTCCAG-GTGAAG---------------------GTGCCAGCTGT------------------AAGG----------CAAC----------------------------------------------------CAGAACCTCAGAAACCACAGGAACCCGACTTCGAAGAGAATCCT-------G---AGC-------TGCAGAAGATC-GATGAGCCCGAACCGGTGGATGA------AGAAGTCGATA---------------------ATCCG------------------------------------------------------------------CATCCGGCGGACGAAGAACCGCGACAGCAGCCCCA----
droSec2	scaffold_2:2803594-2803786 +		TGCCCGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGTCCAG-GTGAAG---------------------GTGCCAGCTAT------------------TAGG----------CAAC----------------------------------------------------CAGAAGCTCAGAAACCACAGGAACCCGACTTCGAAGAGAATCCT-------G---AGC-------TGCAGAAGATC-GATGAGCCCGAACCGGTGGATGA------AGAAGTCGATA---------------------ATCCG------------------------------------------------------------------CATCCGGCGGACGACGAACCGCGACAGCAGCCCCC----
droYak3	3L:9153137-9153329 -		TGCCCGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGCCCGG-GTGAAG---------------------GTGCCAGCTAT------------------TCGG----------CAAC----------------------------------------------------CAGAATCTAAGAAACCACAAGATCCCGACTTTGAAGAGGATCCC-------G---AGC-------TGCAGAAAATC-GATGAGCCGGAACCGGTGGATGA------GGAGCTCCATA---------------------ATCCG------------------------------------------------------------------CAGCCGGCGGACGATGAATCGCAGCAGCAGCCCCA----
droEre2	scaffold_4784:2808298-2808490 +		TGCCCGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGTCCGA-GCGAGG---------------------GTGCCAGCTAT------------------TAAG----------CAAC----------------------------------------------------CAGAAGCTAAAAAACCACAGGAACCCGACTTTGAAGAGGATCCT-------G---AGC-------TGCAGAAGATC-GATGAACCGGAACCTGTGGATGA------GGAGCTGCATA---------------------ATCCG------------------------------------------------------------------CAGCCGGCGGACGACGAACCGCAGCAACAGCCCCA----
dp5	XR_group8:3606184-3606400 +		AGCCCGAGAA---------------------------GGCAG------CGCTTTTGGG-------TCAA----------AAG---------------------GCCGCCGCTGT------------------GAAC----------GA--AGATACAGTA-GAACGTATTCAGCCCATTCATGTCGAAGCGCTTAAGCCCCG-ACAA------------------------CA---GGCGGAACTAGAAGCAGG---AGC-------CGAAAAAGA-----------------------------------------------------------------------------------------ACTTGACCCCGAATCAGATTATCCTGACGAAAAACCCAAACGGATGCGGCCAAAGAACGACGAATATGGCCAGCAGCCTGA----
droPer2	scaffold_23:1519973-1520189 +		AGCCCGAGAA---------------------------GGCAG------CGCTTTTGGG-------TCAA----------AAG---------------------GCCGCCGCTGT------------------GAAC----------GA--AGATTCAGTA-GAACGTATTCAGCCCATTCATGTCGAAGCGCTTAAGCCCCG-ACAA------------------------CA---GGCGGAACTAGAAGCAGG---AGC-------CGAAAAAGA-----------------------------------------------------------------------------------------ACTTGACCCCGAATCAGATTATCCTGACGAAAAACCCAAACGGATGCGGCCAAAGAACGACGAATATGGCCAGCAGCCTGA----
droWil2	scf2_1100000004511:11169911-11170123 -		GAAGCAGA------------------------------GTCG------GCATCCGCTC-------TAAGATCCAA-TGAAAA---------------------ATCTAAGAAAT------------------TGGA---CCCACAGCACT----------------------------------------------------CAAATGCAGAAA---------ATCC----TTTAA--GTGTCAGG-------G---AGCATAATAATGCAAACGATC-GA-------AATGAGAACGATAACGACAACGATGTATACCCAGAGAGGCTTCCGGCGCCAAATAGG------------------------------------------------------------------CATCTTGCAGACGATAAACCTGCTCAGCAACCTCCCGAA
droVir3	scaffold_13049:14884963-14885139 +		TCCCAAAGAAA--------------------------TTCAG------ATGGATCTGC-------CGCTGCACAAAGTAAAG---------------------AACGATGTTGT------------------GCAG----------GA--AGCGCC-----------------------------------------------ACAGGTGGATCAGCCCGAAAAGGAAGAC---------GCAGA------------AGA-------TGCAGAAGACG-CACAAGA---------T-------------------------------------------------------------------------CAATCGGAGGCTGATGCGCCG---------------------GATGCAGCGATCAATAAGGTGGAACAAGGAAACGA----
droMoj3	scaffold_6680:21993012-21993216 -		AGCCCTTGAA---------------------------GCCAG------GAGCAAGGGTCGCCGAGCAACGTCTGG-AAGCAG------C--------GAGAGATATCCAAT-----TGCCTGAGCCAAATCATAAA------------------------------------------------------------------AAGAAAATCAT--TGAGCCGAAGGACGAATTAGTGGCGGAGCTT-------G---A-------------AAAGGGG-GACGATGCAGA------GGA---------TGAGGCGGACC---------------------AGTCC------------------------------GATCTCGAGGAAGTCGATGCAAAG------------CACAAAGCAAAA------------------GACGA----
droGri2	scaffold_15110:19320859-19321078 +		CTCTGCACGG----------------------------GCAGCGGCACTTCGATCTGG-------CGATCGACGT-GTGAAA---------------------TATGAGGATG------------------------------------------CTGTAAGAATGAAAGC-GCAGGC-------------------------GCAAATTGATGAGCCACAGCATGGAAAGCAGGACGAAATTCTT-------G---ATG-------AACAGGATATG-GAAGACT---------------------------CAGCGA---------------------A---AGAAGCTGCAGATGACGAGCAAAATCAGGTCGAACCTGAGCAGTTTGATGCAAAACTCC---------------------A---------GA--AAGGCGAT----

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

TCCCACAGAA---------------------------ACAAG------GTCGTTCCGC-------CGATGTGCTG-GAAAAG---------------------CATGATGACGT------------------GAGC----------CAGA----------------------------------------------------AAAAAGTGCATAACCCAGTAGAGCCAGATCTGGACATGGAGAAA-------A---AGA-------ACGAAAAGAAAAGTGGAACCCGATGACGTATAGGA------AGAAGAAGCAA---------------------A---A------------------------------------------------------------------GATGCTGCGGAAAAGGAGAATATAGTACCACTGGA----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGCGGAAAAGGAGAATATA...............	24	3	0.33	1	0	0	0	0	1	0
........................................................................................................ATGATGACGT------------------GAGC----------CAGA----------------------------------------------------AAAAAGT.................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	1	0
................................................................................AG---------------------CATGATGACGT------------------GAGC----------CAGA----------------------------------------------------AAAAAG..................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	1	0	0	0
.......................................................................................................CATGATGACGT------------------GAGC----------CAGA----------------------------------------------------........................................................................................................................................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0

droBip1

TTCCACAGCA---------------------------AGAAG------GTCGTTCTGG-------CAATGTGCCG-GAAAAG---------------------CATGATGACGT------------------GAAC----------CAGA----------------------------------------------------AAAAGAATCATAACCCAGTAGAGCCAGAT------GCAGATGTC-------G---AGA-------AAAAGAACGAC-GACGAACCCGAAGAGGAACTGGA------AGGTGAAGCGA---------------------A---A------------------------------------------------------------------GATCCTGCAGAAAAAGAGAATAGAGTGCCGCTGGA----	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCCGGAACACCACGGCGTGGAGCCTGTACCAGAGCCGGCTG------CCCGTTCGGG-------TGATGTTCAG----AAA---------------------GTGCCAT------TGCTG------AAACCCAAG----------CAGC----------------------------------------------------CAGAGGTTAAAAATGAACCCGAACCCGACTTTGAAGCTGAAGCA-------G---AGC-------TGCAAAAGATC-GATGAGCCCGAACCCGAGCAGGA------GGAGGTGCACA---------------------ATCCA------------------------------------------------------------------CAACCCGC---------------GCAACAGCCAGA----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCCCGAGCA---------------------------GGCGG------GCCTTTCCGG-------CAACGTCCAG-CCCAGGAATCATGCTCCGCAGCCAGATAAGCCAGCTA--------------------AGCCAGTC--AAGCGGC----------------------------------------------------CA---------AAGCCAGAGGAGCCCGACTCCCAGGAGGATCCC-------GAGGAGC-------TGAAGAAGATC-GACGAGCCAGAGCCGGAGGACGAC---GAGGAGGCCCACG---------------------ATC---------------------------------------------------------------------------------AGGAGCCTGTCCAGCAGCCGCA----	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGCCGGAACA---------------------------GGCTG------GTCTCTCCGG-------CGATATTGAG-CTG------------------GCAAAGATGCCAGCTCCAAGGGAA------AAACTCAAG----------AAAC----------------------------------------------------CAGAGGTGCGAAAGCCCGAGGAACCTGACTTCGAGGAGGATCCA-------G---AGC-------TGCAGAAGATC-GATGACCCGGAACCGGTGGACGA------GGAGGACCACA---------------------ATCC-----------------------------------------------------------------------------------------------TGCCCAG----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGCCCGAACA---------------------------GGCTG------GACTTTCCGG-------CGATGTCCAG-CAG------------------CCAAGGAAGCCAGTTCCCGAGGCA------AAAGTTAAG----------AAAC----------------------------------------------------CAGATGTGAAACAGTCAGAGGAACACGATCTTGAAGAGGATCCA-------G---AGC-------TGCAGAAGATC-GATGAGCCGGAGCCGGTGGGCGA------TG------------------------------------------------------------------------------------------------------------------------------AGCAGCCTCA----	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGCCTGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGTTCAG-CCAAGG---------------------ATGCCAGCTCT------------------TAGA----------CAAC----------------------------------------------------CAGAGGCTAGGAAACCGCCGGAAGCCGACTTTGAAGAGGAGCCC-------G---AGC-------TGCAAAAGGTC-GATGAGCCGGAACCGGACGATCA------GGAGGTCCACA---------------------ACCCG------------------------------------------------------------------CGACCGGCGAACGATGAGCCGGAGCAGCAGCCCCA-AGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGCCCGAAAA---------------------------TGCTG------GTCTCTCGGG-------AGATGTGCAG-CCCAGG---------------------TTACCGGCTAT------------------AAGG----------CAGC----------------------------------------------------CAGAGGTTAAAAAGGAACAGGAACCGGATTTTGAAGAGGATCCC-------G---AGC-------TGCAAAAGGTG-GATGAACCGGAACCAGGCGATGC------AGAGGTCCATA---------------------ATCCA------------------------------------------------------------------CGTCCAGCGGACGATGAACCCGCGCAGCAGCCACA-GGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGCCCGAACA---------------------------GGCTG------GCCTTTCCGG-------CGATGTTCAG-CCTAAT---------------------ATTCCAGCTCCACAGCCT------AGACATAAG----------CAAC----------------------------------------------------CAAGCGCTAAAAAAGAAGTAGAACCAGATTTTGAAGCGGATCCG-------G---AGC-------TACAGAAGATC-GATGAGCCGGAACCGGAGAACGA------AGGGGTCCACA---------------------ATCCT------------------------------------------------------------------CGGTCTGCCGAAGATGAGCCTGGACAGCAGCCGCA----	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGCCCGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGTCAAG-GTGAAG---------------------GTGCCAGCTAT------------------AAAG----------CAAC----------------------------------------------------CAGAACCTCAGAAACCACAGGAACCCGACTTCGAAGAGGATCCT-------G---AGC-------TGCAGAAGATC-GATGAGCCCGAACCGGTGGAGGA------AGAAGTCGATA---------------------ATCCG------------------------------------------------------------------CATCCGGCGGACGACGAACCGCAACAGCAGCCCCA----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................TCCT-------G---AGC-------TGCAGAAGATC-GATGAGC....................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GAAGATC-GATGAGCCCGAACC.............................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AGATC-GATGAGCCCGAACCGG...........................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AGC-------TGCAGAAGATC-GATGAGCCCGAA...............................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
..............................................................................................................................................................................................................................................AGGATCCT-------G---AGC-------TGCAGAAGATC-GATGA......................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GACTTCGAAGAGGATCCT-------G---AGC-------TGCA...................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ATCCT-------G---AGC-------TGCAGAAGATC-GATGAGC....................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGGAACCCGACTTCGAAGAGG.................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GATGAGCCCGAACCGGTGGAGGA------..............................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AGGATCCT-------G---AGC-------TGCAGAAG...............................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................CCGAACCGGTGGAGGA------AGAA..........................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ACCACAGGAACCCGACTTCGAAGAGGA................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................TC-GATGAGCCCGAACCGGTGGAGG.....................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................AGAGGATCCT-------G---AGC-------TGCAGAA................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CGG-------CGATGTCAAG-GTGAAG---------------------GTGCCA.....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GAAGATC-GATGAGCCCGAACCGGT..........................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATGAGCCCGAACCGGTGGAGG.....................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AGATC-GATGAGCCCGAACCG............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................GAGCCCGAACCGGTGGAGGA------A.............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AC----------------------------------------------------CAGAACCTCAGAAACCA.......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGGCGGACGACGAACC...................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AGGATCCT-------G---AGC-------TGCAGA.................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GATC-GATGAGCCCGAACCGGTGGAG......................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GAAGATC-GATGAGCCCGAACCGA...........................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................................GATC-GATGAGCCCGAACCGGT..........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................AGATC-GATGAGCCCGAACCGGTGGAGGA------..............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................CTTCGAAGAGGATCCT-------G---AGC-------T......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GATC-GATGAGCCCGAACC.............................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GATC-GATGAGCCCGAACCGGTGGA.......................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GAAGATC-GATGAGCCCGAAC..............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AAGAGGATCCT-------G---AGC-------TGCAGAA................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CCG------------------------------------------------------------------CATCCGGCGGACGACGAACCATC................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................AAGAGGATCCT-------G---AGC-------TGCAG..................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAAG----------CAAC----------------------------------------------------CAGAACCTCAGAAACCACAGGA..................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................T-------G---AGC-------TGCAGAAGATC-GATGAG.....................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSim2

TGCCCGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGTCCAG-GTGAAG---------------------GTGCCAGCTGT------------------AAGG----------CAAC----------------------------------------------------CAGAACCTCAGAAACCACAGGAACCCGACTTCGAAGAGAATCCT-------G---AGC-------TGCAGAAGATC-GATGAGCCCGAACCGGTGGATGA------AGAAGTCGATA---------------------ATCCG------------------------------------------------------------------CATCCGGCGGACGAAGAACCGCGACAGCAGCCCCA----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAACCGCGACAGCA..........	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GCCCGAACCGGTGGATGA------AGAAGT........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................T-------G---AGC-------TGCAGAAGATC-GATGAGCCCGAA...............................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGAGAATCCT-------G---AGC-------TGCA...................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................CGATA---------------------ATCCG------------------------------------------------------------------CATCCGGCGGAC...........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GCAGAAGATC-GATGAGCCCGAACC.............................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GATGA------AGAAGTCGATA---------------------A.............................................................................................................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................AGAAGATC-GATGAGCCCGAACCGGTG.........................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TCGAAGAGAATCCT-------G---AGC-------TGC....................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGCAGAAGATC-GATGAGCC...................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TGCAGAAGATC-GATGAGCCCGAACCGG...........................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................GAGAATCCT-------G---AGC-------TGC....................................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

TGCCCGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGTCCAG-GTGAAG---------------------GTGCCAGCTAT------------------TAGG----------CAAC----------------------------------------------------CAGAAGCTCAGAAACCACAGGAACCCGACTTCGAAGAGAATCCT-------G---AGC-------TGCAGAAGATC-GATGAGCCCGAACCGGTGGATGA------AGAAGTCGATA---------------------ATCCG------------------------------------------------------------------CATCCGGCGGACGACGAACCGCGACAGCAGCCCCC----	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................G---AGC-------TGCAGAAGATC-GATGAGCCC..................................................................................................................................................................	24	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................................................................................TGAGCCCGAACCGGTGGAT......................................................................................................................................................	19	1	1.00	1	0	0	1	0
.........................................................G-------CGATGTCCAG-GTGAAG---------------------GTGCCAG....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
...........................................................................................................CAGCTAT------------------TAGG----------CAAC----------------------------------------------------CAGAAG..................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................GCCCGAACCGGTGGATGA------AGAAGTC.......................................................................................................................................	25	1	1.00	1	1	0	0	0
..................................................................GATGTCCAG-GTGAAG---------------------GTGCCAGCT..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.....................................................TCCGG-------CGATGTCCAG-GTGAAG---------------------GTGCCA.....................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................CCG------------------------------------------------------------------CATCCGGCGGACGACGAACCGC.................	25	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGCGGACGACGAACCGCGACAGC...........	27	1	1.00	1	1	0	0	0
.........................................................G-------CGATGTCCAG-GTGAAG---------------------GTGCCA.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...................................................................ATGTCCAG-GTGAAG---------------------GTGCCAGC...................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................ATGAGCCCGAACCGGTGGATGA------AGA...........................................................................................................................................	25	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................GGTGGATGA------AGAAGTCGATA---------------------AT............................................................................................................	22	1	1.00	1	0	0	1	0
.................................................CCTTTCCGG-------CGATGTCCAG-GTGAAG---------------------...........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................AAGTCGATA---------------------ATCCG------------------------------------------------------------------CATCCGGCGGA............................	25	1	1.00	1	0	1	0	0
.....GAAAA---------------------------GGCTG------GCCTTTCCGG-------C................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACGAACCGCGACAGCAGC........	21	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................CCT-------G---AGC-------TGCAGAAGATC-GATGAGC....................................................................................................................................................................	25	1	1.00	1	0	1	0	0

droYak3

TGCCCGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGCCCGG-GTGAAG---------------------GTGCCAGCTAT------------------TCGG----------CAAC----------------------------------------------------CAGAATCTAAGAAACCACAAGATCCCGACTTTGAAGAGGATCCC-------G---AGC-------TGCAGAAAATC-GATGAGCCGGAACCGGTGGATGA------GGAGCTCCATA---------------------ATCCG------------------------------------------------------------------CAGCCGGCGGACGATGAATCGCAGCAGCAGCCCCA----	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................GCAGAAAATC-GATGAGCCGGAACC.............................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................AACCGGTGGATGA------GGAGCTCCATA---------------------..............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................AACCACAAGATCCCGACT..........................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATCCC-------G---AGC-------TGCAGAAAATC-...........................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................GACTTTGAAGAGGATCCC-------G---AGC-------.......................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GAGCTCCATA---------------------ATCCG------------------------------------------------------------------CAGCCGGC...............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................AATC-GATGAGCCGGAACCGGT..........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................GAACCGGTGGATGA------GGAGCTCCATA---------------------..............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................GGATGA------GGAGCTCCATA---------------------AT............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................ATCCCGACTTTGAAGAGGAT...............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................C-GATGAGCCGGAACCGGTGG........................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................CTTTCCGG-------CGATGCCCGG-GTGAAG---------------------GT.........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GATGAGCCGGAACCGGTGGATGA------G.............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................TTTGAAGAGGATCCC-------G---AGC-------TG.....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GATCCC-------G---AGC-------TGCAGAAAATC-GATGAGC....................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------------------------CAGCCGGCGGACGATGAAT....................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CCACAAGATCCCGACTTTGAAGAGG.................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................GATGCCCGG-GTGAAG---------------------GTGCCAG....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GAACCGGTGGATGA------GGAGCTCC......................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATGAGCCGGAACCGGTGGATGA------G.............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................C-GATGAGCCGGAACCGGTGGAT......................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................CTAAGAAACCACAAGATCCC..............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GAACCGGTGGATGA------GGAGCTC.......................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

TGCCCGAAAA---------------------------GGCTG------GCCTTTCCGG-------CGATGTCCGA-GCGAGG---------------------GTGCCAGCTAT------------------TAAG----------CAAC----------------------------------------------------CAGAAGCTAAAAAACCACAGGAACCCGACTTTGAAGAGGATCCT-------G---AGC-------TGCAGAAGATC-GATGAACCGGAACCTGTGGATGA------GGAGCTGCATA---------------------ATCCG------------------------------------------------------------------CAGCCGGCGGACGACGAACCGCAGCAACAGCCCCA----	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................ATGA------GGAGCTGCATA---------------------ATC...........................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................GGATGA------GGAGCTGCATA---------------------ATC...........................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................GATGA------GGAGCTGCATA---------------------ATCC..........................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................ACTTTGAAGAGGATCCT-------G---AGC-------TGC....................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................A---------------------ATCCG------------------------------------------------------------------CAGCCGGCGGACGACGAACCGC.................	28	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................CG------------------------------------------------------------------CAGCCGGCGGACGACGAACCGCAGC..............	27	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................G---AGC-------TGCAGAAGATC-GATGAACCGG.................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................GCAGAAGATC-GATGAACC...................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------------------------CAGCCGGCGGACGACGAACCGCA................	24	1	1.00	1	0	1	0	0	0	0	0
......................................GCTG------GCCTTTCCGG-------CGATGTCCGA-GC....................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AGATC-GATGAACCGGAACC.............................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...................................................................ATGTCCGA-GCGAGG---------------------GTGCCA.....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................ATCCG------------------------------------------------------------------CAGCCGGCGGACGACGAACCG..................	26	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................AGAAGATC-GATGAACCGGAACCTGTG.........................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...................................................TTTCCGG-------CGATGTCCGA-GCGAGG---------------------GT.........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................GAACCCGACTTTGAAGAGG.................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................T-------G---AGC-------TGCAGAAGATC-GATGAACCG..................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................GAACCGGAACCTGTGGATGA------GGAGCTGC......................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CTGTGGATGA------GGAGCTGCATA---------------------ATCC..........................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................AGAGGATCCT-------G---AGC-------TGCAGAAGA..............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0

dp5

AGCCCGAGAA---------------------------GGCAG------CGCTTTTGGG-------TCAA----------AAG---------------------GCCGCCGCTGT------------------GAAC----------GA--AGATACAGTA-GAACGTATTCAGCCCATTCATGTCGAAGCGCTTAAGCCCCG-ACAA------------------------CA---GGCGGAACTAGAAGCAGG---AGC-------CGAAAAAGA-----------------------------------------------------------------------------------------ACTTGACCCCGAATCAGATTATCCTGACGAAAAACCCAAACGGATGCGGCCAAAGAACGACGAATATGGCCAGCAGCCTGA----	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCCAAAGAACGACGAATATGGC...............	26	1	3.00	3	0	0	0	0	0	0	0	0	3	0
............................................................................................................................................................................................................................................................................................................................................................................................................AAACCCAAACGGATGCGGC...................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	3
...............................................................................................................................................................A-GAACGTATTCAGCCCATTCATGT..........................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GCGGAACTAGAAGCAGG---AGC-------C......................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	0	0	0	0	0	1
.................................................GCTTTTGGG-------TCAA----------AAG---------------------GCCGCCG....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAACGACGAATATGGC...............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................GAAGCGCTTAAGCCCCG-A......................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CCCAAACGGATGCGGCCAAAGAA............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................TTCAGCCCATTCATGTCGAAG.....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................G-ACAA------------------------CA---GGCGGAACTAGAAGCAG.....................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
........................................................GG-------TCAA----------AAG---------------------GCCGCCGCTGT------------------..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AA------------------------CA---GGCGGAACTAGAAGCAGG---AGC-------C......................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................AAAGA-----------------------------------------------------------------------------------------ACTTGACCCCGAATCAGA...................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCCAAACGGATGCGGC...................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAACGACGAATATGGCCAGCAGCCT......	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................CAGCCCATTCATGTCGAAG.....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................TTTGGG-------TCAA----------AAG---------------------GCCGCCGCTGT------------------..............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................GTCGAAGCGCTTAAGCCCC.........................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CAA------------------------CA---GGCGGAACTAGAAGC.......................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCTTAAGCCCCG-ACAA------------------------CA---GGC...................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................ACTAGAAGCAGG---AGC-------CGAAAAAGA-----------------------------------------------------------------------------------------.....................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACGACGAATATGGCCAGC...........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................GG-------TCAA----------AAG---------------------GCCGCCGCTGT------------------G.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................GACGAAAAACCCAAACGGATGC......................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AA------------------------CA---GGCGGAACTAGAAGCAGG---AGC-------.......................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................GACGAAAAACCCAAACGGATGCG.....................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................AAAACCCAAACGGATGCGGCC..................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CAGCCCATTCATGTCGAAGC....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CGAAGCGCTTAAGCCCCG-A......................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACGACGAATATGGCCAGCAGCC.......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................GATTATCCTGACGAAAAACCC................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAACGACGAATATGGCC..............	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................................TTTGGG-------TCAA----------AAG---------------------GCCGCC.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GGAACTAGAAGCAGG---AGC-------C......................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................GAAC----------GA--AGATACAGTA-GAAC.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1

droPer2

AGCCCGAGAA---------------------------GGCAG------CGCTTTTGGG-------TCAA----------AAG---------------------GCCGCCGCTGT------------------GAAC----------GA--AGATTCAGTA-GAACGTATTCAGCCCATTCATGTCGAAGCGCTTAAGCCCCG-ACAA------------------------CA---GGCGGAACTAGAAGCAGG---AGC-------CGAAAAAGA-----------------------------------------------------------------------------------------ACTTGACCCCGAATCAGATTATCCTGACGAAAAACCCAAACGGATGCGGCCAAAGAACGACGAATATGGCCAGCAGCCTGA----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................GTA-GAACGTATTCAGCCC..................................................................................................................................................................................................................................................................................	18	1	5.00	5	4	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CCTGACGAAAAACCCAAACGGATG.......................................	24	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................GAAC----------GA--AGATTCAGTA-GAAC.............................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAACGACGAATATGGCC..............	21	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAACGACGAATATGGCCAGC...........	24	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAACGACGAATATGGCCAGCAGC........	27	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................GGCGGAACTAGAAGCAGG---AGC-------.......................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................CAGG---AGC-------CGAAAAAGA-----------------------------------------------------------------------------------------ACT..................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................GCAGG---AGC-------CGAAAAAGA-----------------------------------------------------------------------------------------ACTT.................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................AGC-------CGAAAAAGA-----------------------------------------------------------------------------------------ACTTGACCCC...........................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................GAAC----------GA--AGATTCAGTA-GAACGG...........................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAAGAACGACGAATATGGC...............	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................CGAAGCGCTTAAGCCCCG-A......................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................GAAAAAGA-----------------------------------------------------------------------------------------ACTTGACCCCGAAT.......................................................................	22	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................AGG---AGC-------CGAAAAAGA-----------------------------------------------------------------------------------------ACTTGACCC............................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................ATTCAGTA-GAACGTATTCAGCCC..................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................G-ACAA------------------------CA---GGCGGAACTAGAAGCAGG---A................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................GA--AGATTCAGTA-GAACGTATT........................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CGAAAAACCCAAACGGATGC......................................	20	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................CGGAACTAGAAGCAGG---AGC-------C......................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................ATTCAGTA-GAACGTATTCAGCCCATTC..............................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................CATGTCGAAGCGCTTAAGCCCC.........................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CGAAAAAGA-----------------------------------------------------------------------------------------ACTTGACCC............................................................................	18	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTGACGAAAAACCC................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................GATTCAGTA-GAACGTATTCAGCCC..................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droWil2

GAAGCAGA------------------------------GTCG------GCATCCGCTC-------TAAGATCCAA-TGAAAA---------------------ATCTAAGAAAT------------------TGGA---CCCACAGCACT----------------------------------------------------CAAATGCAGAAA---------ATCC----TTTAA--GTGTCAGG-------G---AGCATAATAATGCAAACGATC-GA-------AATGAGAACGATAACGACAACGATGTATACCCAGAGAGGCTTCCGGCGCCAAATAGG------------------------------------------------------------------CATCTTGCAGACGATAAACCTGCTCAGCAACCTCCCGAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................AACGATC-GA-------AATGAGAACGAT......................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................ATGCAAACGATC-GA-------AATGAGAAC.........................................................................................................................................................	23	1	2.00	2	2	0	0	0	0
.........................................................................................................................................................................................................................................................................AATGCAAACGATC-GA-------AAT...............................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................ATGCAAACGATC-GA-------AATGAGAACGAT......................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................ATAATAATGCAAACGATC-GA-------AATGAGAAT.........................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................ATAATAATGCAAACGATC-...........................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................GCATAATAATGCAAACGATC-GA-------AATGAGA...........................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................CAGAGAGGCTTCCGGCGC.................................................................................................................	18	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................CAACGATGTATACCCAGAGAGGCTTCC......................................................................................................................	27	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................AGG------------------------------------------------------------------CATCTTGCAGACGATA.......................	19	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................ATACCCAGAGAGGCTTCC......................................................................................................................	18	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................CGATAACGACAACGATGTATACCC..................................................................................................................................	24	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................AATAATGCAAACGATC-GA-------AATGA.............................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................CAAATAGG------------------------------------------------------------------CATCTTGCAGACG..........................	21	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................GTCAGG-------G---AGCATAATAATGCA...................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................CCCAGAGAGGCTTCCGGCG..................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................ATGCAGAAA---------ATCC----TTTAA--GT..................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................ATAATAATGCAAACGATC-GA-------AATGA.............................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................CGATGTATACCCAGAGAGGCTTCC......................................................................................................................	24	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................CATAATAATGCAAACGATC-GA-------A.................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..................................................ATCCGCTC-------TAAGATCCAA-TGAAAA---------------------AT.........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGCAGACGATAAACCTGCTC..............	24	1	1.00	1	0	0	0	1	0
.........................................................C-------TAAGATCCAA-TGAAAA---------------------AT.........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................ATACCCAGAGAGGCTTCCGGCGCC................................................................................................................	24	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................GAAA---------ATCC----TTTAA--GTGTCAGG-------G---AGC..............................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.........................................................................................................CTAAGAAAT------------------TGGA---CCCACAGCACT----------------------------------------------------CAAA....................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0

droVir3

TCCCAAAGAAA--------------------------TTCAG------ATGGATCTGC-------CGCTGCACAAAGTAAAG---------------------AACGATGTTGT------------------GCAG----------GA--AGCGCC-----------------------------------------------ACAGGTGGATCAGCCCGAAAAGGAAGAC---------GCAGA------------AGA-------TGCAGAAGACG-CACAAGA---------T-------------------------------------------------------------------------CAATCGGAGGCTGATGCGCCG---------------------GATGCAGCGATCAATAAGGTGGAACAAGGAAACGA----	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................G---------------------AACGATGTTGT------------------GCAG----------GA--............................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGGTGGAACAAGGAAA.......	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GTAAAG---------------------AACGATGTTGT------------------GC............................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAATCGGAGGCTGATGCGC..............................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................C-----------------------------------------------ACAGGTGGATCAGCCCGAAAA..................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................GACG-CACAAGA---------T-------------------------------------------------------------------------CAATCGGAGGCT.....................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AGA---------T-------------------------------------------------------------------------CAATCGGAGGCTGATG.................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................G---------------------AACGATGTTGT------------------GCAG----------GA--AGCGC.......................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................ACAGGTGGATCAGCCCGAAAA..................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAAGGTGGAACAAGGAAAC......	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CGAAAAGGAAGAC---------GCAGA------------AG...............................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGATCAATAAGGTGGAA...............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................G---------------------AACGATGTTGT------------------GCAG----------GA--AGCG........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AGA------------AGA-------TGCAGAAGACG-CACAAGA---------T-------------------------------------------------------------------------CA...............................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ACG-CACAAGA---------T-------------------------------------------------------------------------CAATCGGAGG.......................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................C-----------------------------------------------ACAGGTGGATCAGCCCGA.....................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATAAGGTGGAACAAG...........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TGATGCGCCG---------------------GATGCAGCGA.............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CAG------ATGGATCTGC-------CGCTGCACAAA......................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................AAGA---------T-------------------------------------------------------------------------CAATCGGAGGCTGAT..................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ACAAGA---------T-------------------------------------------------------------------------CAATCGGAGGCTG....................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AAAGTAAAG---------------------AACGATGTTGT------------------GCA...........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------CAATCGGAGGCTGATGCGCC.............................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AGA---------T-------------------------------------------------------------------------CAATCGGAGGCTGATGCGCCG---------------------GAT....................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................A--AGCGCC-----------------------------------------------ACAGGTGGATCAGCCC.......................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TGT------------------GCAG----------GA--AGCGCC-----------------------------------------------ACAGGT.................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................CAGAAGACG-CACAAGA---------T-------------------------------------------------------------------------CAATCGGAGGCT.....................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................G-CACAAGA---------T-------------------------------------------------------------------------CAATCGGAGGCTGAT..................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................G---------------------AACGATGTTGT------------------GCAG----------GA--AGC.........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GA---------T-------------------------------------------------------------------------CAATCGGAGGCTGATGCGCCG---------------------GAT....................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................GCC-----------------------------------------------ACAGGTGGATCAGCCCGAA....................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------CAATCGGAGGCTGATGCGCCG---------------------GATGCAGCGATCAATAAGG....................	41	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................AG------ATGGATCTGC-------CGCTGCAC.........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GCTGATGCGCCG---------------------GATGCAGC...............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................C---------GCAGA------------AGA-------TGCAGAAGACG-CACAAGA---------T-------------------------------------------------------------------------CAATCGGAGGCT.....................................................................	40	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCCCTTGAA---------------------------GCCAG------GAGCAAGGGTCGCCGAGCAACGTCTGG-AAGCAG------C--------GAGAGATATCCAAT-----TGCCTGAGCCAAATCATAAA------------------------------------------------------------------AAGAAAATCAT--TGAGCCGAAGGACGAATTAGTGGCGGAGCTT-------G---A-------------AAAGGGG-GACGATGCAGA------GGA---------TGAGGCGGACC---------------------AGTCC------------------------------GATCTCGAGGAAGTCGATGCAAAG------------CACAAAGCAAAA------------------GACGA----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................GATGCAGA------GGA---------TGAGGCG.......................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................AAGAAAATCAT--TGAGCCGAAG.................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................TTAGTGGCGGAGCTT-------G---A-------------AA.................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................G-GACGATGCAGA------GGA---------TGAGGCG.......................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................GACC---------------------AGTCC------------------------------GATCTCGAGGAAGTC............................................................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GACC---------------------AGTCC------------------------------GATCTCGAGGAAGT.............................................................	23	1	1.00	1	0	0	0	0	0	1
.................................................................................................GAGAGATATCCAAT-----TGCCTGAGCC....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATGCAAAG------------CACAAAGC...............................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................G---A-------------AAAGGGG-GACGATGCAGA------G.........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................TCCAAT-----TGCCTGAGCCAAATCATAAA------------------------------------------------------------------A.......................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................................................................................................GATATCCAAT-----TGCCTGAGCCAA..................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

CTCTGCACGG----------------------------GCAGCGGCACTTCGATCTGG-------CGATCGACGT-GTGAAA---------------------TATGAGGATG------------------------------------------CTGTAAGAATGAAAGC-GCAGGC-------------------------GCAAATTGATGAGCCACAGCATGGAAAGCAGGACGAAATTCTT-------G---ATG-------AACAGGATATG-GAAGACT---------------------------CAGCGA---------------------A---AGAAGCTGCAGATGACGAGCAAAATCAGGTCGAACCTGAGCAGTTTGATGCAAAACTCC---------------------A---------GA--AAGGCGAT----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................................................................................................................................................................................GAGCAAAATCAGGTCGAACCTGAGC.................................................................	25	1	1.00	1	1	0
.....CACGG----------------------------GCAGCGGCACTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
..............................................................................................................................................................................................................................................................................................................................A---------------------A---AGAAGCTGCAGATGACGAGCA.....................................................................................	23	1	1.00	1	1	0

dan_3370

scaffold_13499:1229519-1229609 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads