ID:

dan_3361

 Coordinate:

scaffold_13469:770211-770361 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.9

Flybase annnotation

CDS [Dana\GF22714-cds]; exon [dana_GLEANR_6824:3]; intron [Dana\GF22714-in]

No Repeatable elements found

mature
  1. scaffold_3661:2686-2710 +
  2. scaffold_5803:2504-2528 +
  3. scaffold_8856:830-854 +
  4. scaffold_9428:2923-2947 +
  5. scaffold_9479:4007-4031 +
  6. scaffold_9881:2542-2566 +
  7. scaffold_12187:4307-4331 +
  8. scaffold_12350:36-60 +
  9. scaffold_12555:6839-6863 +
  10. scaffold_13002:35176-35200 +
  11. scaffold_13016:17335-17359 +
  12. scaffold_13021:222340-222364 +
  13. scaffold_13082:2382293-2382317 +
  14. scaffold_13099:862952-862976 +
  15. scaffold_13099:878672-878696 +
  16. scaffold_13105:45073-45097 +
  17. scaffold_13172:38718-38742 +
  18. scaffold_13339:1073110-1073134 +
  19. dan_3361  scaffold_13469:770264-770288 +
  20. scaffold_13499:403497-403521 +
star
  1. scaffold_8808:3837-3862 +
  2. scaffold_9356:566-591 +
  3. scaffold_9437:66-91 +
  4. scaffold_9459:1482-1507 +
  5. scaffold_9689:2041-2066 +
  6. scaffold_9741:3443-3468 +
  7. scaffold_12276:2543-2568 +
  8. scaffold_12586:56931-56956 +
  9. scaffold_12911:1290400-1290425 +
  10. scaffold_13021:222236-222261 +
  11. scaffold_13032:8101-8126 +
  12. scaffold_13082:749034-749059 +
  13. scaffold_13082:2382195-2382220 +
  14. scaffold_13105:45036-45061 +
  15. scaffold_13111:918606-918631 +
  16. scaffold_13120:11818-11843 +
  17. scaffold_13282:185819-185844 +
  18. scaffold_13337:23115809-23115834 +
  19. scaffold_13469:541455-541480 +
  20. dan_3361  scaffold_13469:770227-770252 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCCTGATCAAGGCGTTGAAGCGTATGCACAGCGTAAGACCTGGAGTTAAAGGAGACACGACGCCAAAACCTCTGGCCTGCCATAGATCCTGCGGGGTAGGTAGGCCCTTCGTGCCCTGATCCGGCCGCTAAGCAGCGAAAGGCATATCCTGCCCGGTGTATGCCTGGGAGGTGAGCCGATCGGTCTGTTAACACGGATTAGGTGCCGGCCACGGCGAAAGGGCATCCACGGTACAACAGCAACAACAGCAA
******************************************************************..((...((((((((....((((....)))).))))))))................))....*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 V106
head
 V039
embryo
 M058
embryo
 V055
head
.............................................................................................................................................................................................AACACGGATTAGGTGCCGGCCACGG..................................... 25 0 20 1.60 32 32 0 0 0 0
.......................................................................................................................................................................................TCTGTTAACACGGATTAGGTGCCGGC.......................................... 26 0 20 1.10 22 22 0 0 0 0
.......................................................................................................GCCCTTCGTGCCCTGATCCGGCCGC........................................................................................................................... 25 0 20 0.85 17 17 0 0 0 0
................................................AAGGAGACACCACGCCAAAACCTCTG................................................................................................................................................................................. 26 1 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................................GAAGGGGATCCACGGAACAAC.............. 21 3 3 0.33 1 0 1 0 0 0
.......................................................................................................................................................................................TCTGTTAACACGGATTAGGTGCCG............................................ 24 0 20 0.30 6 6 0 0 0 0
....GATTATGCCGTTGAAGCGTAT.................................................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 1 0 0
..............................................................................................................................................................................................ACACGGATTAGGTGCCGG........................................... 18 0 20 0.20 4 4 0 0 0 0
........................................................................................................................................................................................CTGTTAACACGGATTAGGTGCC............................................. 22 0 20 0.15 3 3 0 0 0 0
.................................................................................................................................................................................................................CACGGCGAAAGGGCATCCACGG.................... 22 0 20 0.10 2 1 0 0 1 0
...............................................................................................................................................................................................CACGGATTAGGTGCCGGCCACGGCGA.................................. 26 0 20 0.10 2 1 0 0 1 0
...................................................................................................................................CCAGCGAAAGGCATATCCTGCCCGG............................................................................................... 25 1 11 0.09 1 0 0 1 0 0
......GCAAGGCGTTGAAGGGTGTG................................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 1
...............................................AAAACACACACGACGCCAAAAC...................................................................................................................................................................................... 22 3 16 0.06 1 0 0 0 1 0
......................................................................................TCCTGCGGGGTAGGTAGGCCCTTCGT........................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................CTGTTAACACGGATTAGGTGCCGGCC......................................... 26 0 20 0.05 1 1 0 0 0 0
..................................................................AACCTCTGGCCTGCCATAGATCCTGC............................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................TTAACACGAATTAGGTGCCGGCCACGG..................................... 27 1 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................................CCACGGCGAAAGGGCATCCACGG.................... 23 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................ATGCCTGGGAGGTGAGCCGATCGGTCT................................................................. 27 0 20 0.05 1 1 0 0 0 0
.................................................................AAACCTCTGGCCTGCCATAGATCCTGCG.............................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0
.......................................................................................................GCCCTTCGTGCCCTGATCCGGCCGCTA......................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................CTGGGAGGTGAGCCGATCGGTCTG................................................................ 24 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................TGTTAACACGGATTAGGTGCCGGCC......................................... 25 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................ATGCCTGGGAGGTGAGCCGAT....................................................................... 21 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................GTTAACACGGATTAGGTGCCGG........................................... 22 0 20 0.05 1 1 0 0 0 0
.....................................................................................................AGGCCCTTCGTGCCCTGATCCGG............................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0
..................................................................................................................................................................CCTGGGAGGTGAGCCGATCGGTCTG................................................................ 25 0 20 0.05 1 1 0 0 0 0
....................................................................................................TAGGCCCTTCGTGCCCTGATCCGGCCG............................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0
.........................................................CGACGCCAAAACCTCTGGCCTGCC.......................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
......................................................................................TCCTGCGGGGTAGGTAGGCCCTTCG............................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................TCTGTTAACACGGATTAGG................................................. 19 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................AAAGGCATGTGCTGCCCGC............................................................................................... 19 3 20 0.05 1 0 0 0 0 1
...................................................................................................................................................................CTGGGAGGTGAGCCGATCGGTCTGTTAA............................................................ 28 0 20 0.05 1 1 0 0 0 0
...................................................................................................GTAGGCCCTTCGTGCCCTGATC.................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

AGGACTAGTTCCGCAACTTCGCATACGTGTCGCATTCTGGACCTCAATTTCCTCTGTGCTGCGGTTTTGGAGACCGGACGGTATCTAGGACGCCCCATCCATCCGGGAAGCACGGGACTAGGCCGGCGATTCGTCGCTTTCCGTATAGGACGGGCCACATACGGACCCTCCACTCGGCTAGCCAGACAATTGTGCCTAATCCACGGCCGGTGCCGCTTTCCCGTAGGTGCCATGTTGTCGTTGTTGTCGTT
***************************************************************************************************************************..((...((((((((....((((....)))).))))))))................))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V106
head
 V055
head
.........................................................................CCGGACGGTATCTAGGACG............................................................................................................................................................... 19 0 20 0.40 8 1 0 0 7 0
.............................................................................................................................................................................TCGGCTAGCCAGACAATTGTGCCTAAT................................................... 27 0 20 0.30 6 6 0 0 0 0
........................................................................................................................................................................................................CCACGGCCGGTGCCGCTTTCCCGT........................... 24 0 20 0.25 5 5 0 0 0 0
..............................................................................................................................................GTATAGGACGGGCCACATACGGACCCT.................................................................................. 27 0 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................................................................................CGCTCTCCCCTAGGTGCGAT.................. 20 3 6 0.17 1 0 0 1 0 0
..........................................................................................................................................................................CACTCGGCTAGCCAGACAATTGTGCCT...................................................... 27 0 20 0.15 3 3 0 0 0 0
..................................................................................................................................................................GGACCCTCCACTCGGCTAGCCAGAC................................................................ 25 0 20 0.15 3 3 0 0 0 0
......................................................................AGACCGGACGGTATCTAGGACGCCC............................................................................................................................................................ 25 0 20 0.15 3 3 0 0 0 0
.......................................................................GACCGGACGGTATCTAGGACGC.............................................................................................................................................................. 22 0 20 0.15 3 3 0 0 0 0
AGGACTAGTTTCGCAAGT......................................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 1
.....................................................................................TAGGACGCCCCATCCATCCGGGAAG............................................................................................................................................. 25 0 7 0.14 1 1 0 0 0 0
................................................................................................................................................ATAGGACGGGCCACATACGGACCCT.................................................................................. 25 0 8 0.13 1 1 0 0 0 0
......................................................................................................................................................................CCTCCACTCGGCTAGCCAGACAATTGT.......................................................... 27 0 20 0.10 2 0 2 0 0 0
..............................................................................................................................................................................CGGCTAGCCAGACAATTGTGCCTAAT................................................... 26 0 20 0.10 2 0 0 2 0 0
..........................................................................................................................................................................CACTCGGCTAGCCAGACAATTGTGCC....................................................... 26 0 20 0.10 2 2 0 0 0 0
.........................................................................................................................................................................CCACTCGGCTAGCCAGACAATTGTG......................................................... 25 0 20 0.10 2 0 2 0 0 0
..............................................................................................................................................................................CGGCTAGCCAGACAATTGTGCCTAGT................................................... 26 1 20 0.10 2 0 2 0 0 0
....................................................................GGAGACCGGACGGTATCTAGGACGCCC............................................................................................................................................................ 27 0 20 0.10 2 2 0 0 0 0
...................................................................................................................GACTAGGCCGGCGATTCGTCGCT................................................................................................................. 23 0 20 0.10 2 0 0 2 0 0
.................................................................................................................................................TAGGACGGGCCACATACGGACCCT.................................................................................. 24 0 11 0.09 1 1 0 0 0 0
.....................................................................................TAGGACGCCCCATCCATCCGGGAAACA........................................................................................................................................... 27 1 11 0.09 1 1 0 0 0 0
......................................................................................................................................................................CCTCCACTCGGCTAGCCAGACAATT............................................................ 25 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................CGGCTAGCCAGACAATTGTGCCTAA.................................................... 25 0 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................CCGGCTAGCCAGACAATTGTGCCTGA.................................................... 26 2 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................CGGCTAGCCAGACAATTGTGCCTATT................................................... 26 1 20 0.05 1 0 1 0 0 0
.........................................................................CCGGACGGTATCTAGGACGCCC............................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
.......................................................................GACCGGACGGTATCTAGGACGCCCC........................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................ACGGCTAGCCAGACAATTGTGCCTAAT................................................... 27 1 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................................GACAATTGTGCCTAATCCACGGCCG.......................................... 25 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................CCTCCACTCGGCTAGCCAGACAAGTTT.......................................................... 27 2 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................ATACGGACCCTCCACTCGGCTAGCCA................................................................... 26 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................CGGCTAGCCAGACAATTGTGCCGA..................................................... 24 1 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................CGGCTAGCCAGACAATTGGGCCTAGT................................................... 26 2 20 0.05 1 0 0 1 0 0
..................................................................TTGGAGACCGGACGGTATCTAGGACG............................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................CCCTCCACTCGGCTAGCCAGA................................................................. 21 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................CGGCTAGCCAGACAATTGTGCCTAATCC................................................. 28 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................CGCCTAGCCAGACAATTGTGCCTAAT................................................... 26 1 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................CGGCTAGCCAGACAATTCTGCCTAAT................................................... 26 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................CTCCACTCGGCTAGCCAGACAAT............................................................. 23 0 20 0.05 1 1 0 0 0 0
.................................................................................................................GGGACGAGGCCGGCGATTCG...................................................................................................................... 20 1 20 0.05 1 0 0 1 0 0
...................................................................................................................GACTAGGCCGGGGATTCGTCGCTT................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0
.......................................................................................................CGGGAAGCACGGGACTAGGCC............................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0
.....................................................................GTGCCCGGGCGGTATCTAGGACGC.............................................................................................................................................................. 24 3 20 0.05 1 0 0 1 0 0
..................................................................................................................................................................GGACCCTCCACTCGGCTAGCCAGACAATT............................................................ 29 0 20 0.05 1 1 0 0 0 0
..............................................................GGTTTTGGAGACCGGACGGTATCTA.................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................................CACGGCCGGTGCCGCTTTCCCGTAGGT....................... 27 0 20 0.05 1 0 1 0 0 0
................................................................................................................................................................................................................GGTGCCGCTTTCCCGTAGGTGCCACG................. 26 1 20 0.05 1 0 1 0 0 0
....................................................................GGAGACCGGACGGTATCTAGGACGC.............................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................ACGGACCCTCCACTCGGCTAGCCAGACC............................................................... 28 1 20 0.05 1 1 0 0 0 0
................................................................................................................................................................ACGGACCCTCCACTCGGCTAGCCAGA................................................................. 26 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................................................TGCCGGTGCCGCTTTCCCGTA.......................... 21 1 20 0.05 1 1 0 0 0 0
......................................................................................AGGACGCCCCATCCATCCGGGAA.............................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................CCACTCGGCTAGCCAGACAATTGTGC........................................................ 26 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................CCACTCGGCGCGCCAGACAATTGTG......................................................... 25 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13469:770161-770411 + dan_3361 TCCTGATCAAG--GCGTTGAAGCGTATGCACAGCGTAAGACCTGGAGTTAAAGGAGACACGACGCCAAAACCTCTGGCCTGCCATAGATCCTGCGGGGTAGGTAGGCCCTTCG-TGCCC-TGATCCGGCCGCTAAGCAGCGAAAGGCATATCCTGCCCGGTGT--ATGCCTGGGAGGTGAGCCGATCGGTCTGTTAACACGGATTAGGTGCCGGC-----CACGGCGAAAGGGCATC----------CAC-GGTACAACAGCAACAACAGCAA
droBip1 scf7180000395252:26998-27255 + TCCCGATCCGGATTCGCTATCGCGTATACTTGGTGTA--TCCTTGGTGTAGCGGAGGCGTGACGTCTA-GTCTTTGGCCTATCACGGATCCTGCAG--CGGGTATGCCCGCCGGTGTGCAAAGACCAATCGCAGACAACCCAAGGATATGTTCCCAAAGGTATGAAAGCCTGTG---TGTGGCCATCGAGAGAGCGACAT--ATAAAGAACCAACGGCAACGCAGCAGAGAAA----CAGCACCGGCAAC-GGAGCAGCAGCAGCGACCACAG
droTak1 scf7180000410526:5485-5524 - GCGCAGGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG--------------------------------CCAGCGC---CA------ACAACAACCACAGCAACAA
droSim2 x:16278230-16278247 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAG
droSec2 scaffold_8186:1566-1597 + GGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACC----------CAA-TGTGCAACAGCAGCAGCAACAG
droYak3 v2_chrUn_3438:953-1002 - GTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAATGCATCAGGCGG-----------------------------------CGACACACTCACCAGCAACAGCAGCAA
droEre2 scaffold_4759:30593-30644 - GTAGCAGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGACAACG-------ACAA----CAGTACCGGCG------ACAACGGCAGCAGCGGCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
TCCTGATCAAG--GCGTTGAAGCGTATGCACAGCGTAAGACCTGGAGTTAAAGGAGACACGACGCCAAAACCTCTGGCCTGCCATAGATCCTGCGGGGTAGGTAGGCCCTTCG-TGCCC-TGATCCGGCCGCTAAGCAGCGAAAGGCATATCCTGCCCGGTGT--ATGCCTGGGAGGTGAGCCGATCGGTCTGTTAACACGGATTAGGTGCCGGC-----CACGGCGAAAGGGCATC----------CAC-GGTACAACAGCAACAACAGCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................AACACGGATTAGGTGCCGGC-----CACGG................................................25201.60323200000
.............................................................................................................................................................................................TCTGTTAACACGGATTAGGTGCCGGC-----.....................................................26201.10222200000
.........................................................................................................GCCCTTCG-TGCCC-TGATCCGGCCGC.............................................................................................................................................25200.85171700000
.............................................................................................................................................................................................TCTGTTAACACGGATTAGGTGCCG............................................................24200.306600000
....................................................................................................................................................................................................ACACGGATTAGGTGCCGG...........................................................18200.204400000
..............................................................................................................................................................................................CTGTTAACACGGATTAGGTGCC.............................................................22200.153300000
............................................................................................................................................................................................................................CACGGCGAAAGGGCATC----------CAC-GG....................22200.102110000
.....................................................................................................................................................................................................CACGGATTAGGTGCCGGC-----CACGGCGA.............................................26200.102110000
........................................................................................TCCTGCGGGGTAGGTAGGCCCTTCG-T..............................................................................................................................................................26200.051100000
..............................................................................................................................................................................................CTGTTAACACGGATTAGGTGCCGGC-----C....................................................26200.051100000
....................................................................AACCTCTGGCCTGCCATAGATCCTGC...................................................................................................................................................................................26200.051100000
......................................................................................................................................................................................................................C-----CACGGCGAAAGGGCATC----------CAC-GG....................23200.051100000
.....................................................................................................................................................................ATGCCTGGGAGGTGAGCCGATCGGTCT.................................................................................27200.051100000
...................................................................AAACCTCTGGCCTGCCATAGATCCTGCG..................................................................................................................................................................................28200.051100000
.........................................................................................................GCCCTTCG-TGCCC-TGATCCGGCCGCTA...........................................................................................................................................27200.051100000
.........................................................................................................................................................................CTGGGAGGTGAGCCGATCGGTCTG................................................................................24200.051100000
...............................................................................................................................................................................................TGTTAACACGGATTAGGTGCCGGC-----C....................................................25200.051100000
.....................................................................................................................................................................ATGCCTGGGAGGTGAGCCGAT.......................................................................................21200.051100000
................................................................................................................................................................................................GTTAACACGGATTAGGTGCCGG...........................................................22200.051100000
.......................................................................................................AGGCCCTTCG-TGCCC-TGATCCGG.................................................................................................................................................23200.051010000
........................................................................................................................................................................CCTGGGAGGTGAGCCGATCGGTCTG................................................................................25200.051100000
......................................................................................................TAGGCCCTTCG-TGCCC-TGATCCGGCCG..............................................................................................................................................27200.051100000
...........................................................CGACGCCAAAACCTCTGGCCTGCC..............................................................................................................................................................................................24200.051100000
........................................................................................TCCTGCGGGGTAGGTAGGCCCTTCG-...............................................................................................................................................................25200.051100000
.............................................................................................................................................................................................TCTGTTAACACGGATTAGG.................................................................19200.051100000
.........................................................................................................................................................................CTGGGAGGTGAGCCGATCGGTCTGTTAA............................................................................28200.051100000
.....................................................................................................GTAGGCCCTTCG-TGCCC-TGATC....................................................................................................................................................22200.051100000
droBip1
TCCCGATCCGGATTCGCTATCGCGTATACTTGGTGTA--TCCTTGGTGTAGCGGAGGCGTGACGTCTA-GTCTTTGGCCTATCACGGATCCTGCAG--CGGGTATGCCCGCCGGTGTGCAAAGACCAATCGCAGACAACCCAAGGATATGTTCCCAAAGGTATGAAAGCCTGTG---TGTGGCCATCGAGAGAGCGACAT--ATAAAGAACCAACGGCAACGCAGCAGAGAAA----CAGCACCGGCAAC-GGAGCAGCAGCAGCGACCACAGSizeHit CountTotal NormTotal
No Reads
droTak1
GCGCAGGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG--------------------------------CCAGCGC---CA------ACAACAACCACAGCAACAASizeHit CountTotal NormTotal
No Reads
droSim2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACC----------CAA-TGTGCAACAGCAGCAGCAACAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................GTGCAACAGCAGCAGCAA...18100.1010001
droYak3
GTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAATGCATCAGGCGG-----------------------------------CGACACACTCACCAGCAACAGCAGCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACAGCAGC..2438.6726026000000000
.......................................................................................................................................................................................................TGCATCAGGCGG-----------------------------------CGACACACTCACCAGC...........2848.2533032100000000
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACAGCAG...2337.3322022000000000
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACAGCAGCA.2535.0015015000000000
.......................................................................................................................................................................................................TGCATCAGGCGG-----------------------------------CGACACACTCACCAG............2743.7515015000000000
......................................................................................................................................................................................................................................................CGACACACTCACCAGCAACAGCAGC..2533.3310000000000010
..................................................................................................................................................................................................TGAAATGCATCAGGCGG-----------------------------------CGACACACT..................2643.0012012000000000
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACAGCA....2233.00909000000000
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACAGCAGCAA2632.33706000000001
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACAGC.....2132.33705200000000
.......................................................................................................................................................................................................TGCATCAGGCGG-----------------------------------CGACACACTCACC..............2542.25907200000000
...........................................................................................................................................................................................................TCAGGCGG-----------------------------------CGACACACTCACCAGCAAC........2742.00808000000000
.......................................................................................................................................................................................................TGCATCAGGCGG-----------------------------------CGACACACTCACCA.............2641.25505000000000
........................................................................................................................................................................................................GCATCAGGCGG-----------------------------------CGACACACTCACCAGC...........2741.00404000000000
...................................................................................................................................................................................................GAAATGCATCAGGCGG-----------------------------------CGACACACT..................2540.75302100000000
........................................................................................................................................................................................................................................................ACACACTCACCAGCAACAGCAG...2230.67202000000000
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACAG......2030.67202000000000
................................................................................................................................................................................................................CGG-----------------------------------CGACACACTCACCAGCAACAGCAGC..2830.67201100000000
........................................................................................................................................................................................................................................................ACACACTCACCAGCAACAGCAGC..2330.67202000000000
..................................................................................................................................................................................................................G-----------------------------------CGACACACTCACCAGCAACAGCAGC..2630.67202000000000
...........................................................................................................................................................................................................TCAGGCGG-----------------------------------CGACACACTCACCAGCAACA.......2840.50202000000000
.......................................................................................................................................................................................................TGCATCAGGCGG-----------------------------------CGACACACTCAC...............2440.50201100000000
.......................................................................................................................................................................................................TGCATCAGGCGG-----------------------------------CGACACACTCA................2340.50201100000000
...........................................................................................................................................................................................................TCAGGCGG-----------------------------------CGACACACTCACCAGCAA.........2640.50202000000000
........................................................................................................................................................................................................GCATCAGGCGG-----------------------------------CGACACACTCACCAG............2640.50202000000000
................................................................................................................................................................................................................CGG-----------------------------------CGACACACTCACCAGCAACAG......2430.33101000000000
..................................................................................................................................................................................................................G-----------------------------------CGACACACTCACCAGCAACAGCA....2430.33101000000000
.................................................................................................................................................................................................................GG-----------------------------------CGACACACTCACCAGCAACAGCAGC..2730.33100100000000
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACAGCAGCAC2630.33101000000000
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACAGCAGT..2430.33101000000000
..............................................................................................................................................................................................................GGCGG-----------------------------------CGACACACTCACCAGCAACAGC.....2730.33101000000000
................................................................................................................................................................................................................CGG-----------------------------------CGACACACTCACCAGCAACAGCATT..2830.33101000000000
........................................................................................................................................................................................................................................................ACACACTCACCAGCAACAGCAGCA.2430.33101000000000
........................................................................................................................................................................................................................................................ACACACTCACCAGCAACAGCA....2130.33101000000000
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACAGCAGCAT2630.33101000000000
.................................................................................................................................................................................................................GG-----------------------------------CGACACACTCACCAGCAACAGC.....2430.33101000000000
............................................................................................................................................................................................................CAGGCGG-----------------------------------CGACACACTCACC..............2040.25101000000000
..........................................................................................................................................................................................................ATCAGGCGG-----------------------------------CGACACACTCACC..............2240.25101000000000
...........................................................................................................................................................................................................TCAGGCGG-----------------------------------CGACACACTCACCAG............2340.25101000000000
.............................................................................................................................................................................................................AGGCGG-----------------------------------CGACACACTCACCAGCA..........2340.25101000000000
........................................................................................................................................................................................................GCATCAGGCGG-----------------------------------CGACACACTCACCA.............2540.25101000000000
....................................................................................................................................................................................................AAATGCATCAGGCGG-----------------------------------CGACACACTCAT...............2740.25101000000000
.TGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAATGCATCAGGCGG-----------------------------------C..........................2340.25101000000000
...........................................................................................................................................................................................................TCAGGCGG-----------------------------------CGACACACTCACCAGCA..........2540.25101000000000
..................................................................................................................................................................................................TGAAATGCATCAGGCGG-----------------------------------CGACACACC..................2640.25100100000000
...T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAATGCATCAGGCGG-----------------------------------CGACA......................2540.25101000000000
...................................................................................................................................................................................................GAAATGCATCAGGCGG-----------------------------------CGACACAC...................2440.25101000000000
.......................................................................................................................................................................................................................................................GACACACTCACCAGCAACATT.....2140.25101000000000
..................................................................................................................................................................................................TGAAATGCATCAGGCGG-----------------------------------CGACACAC...................2540.25101000000000
............................................................................................................................................................................................................CAGGCGG-----------------------------------CGACACACTCACCAGCAAC........2640.25101000000000
....................................................................................................................................................................................................AAATGCATCAGGCGG-----------------------------------CGACACACTCA................2640.25101000000000
..................................................................................................................................................................................................TGAAATGCATCAGGCGG-----------------------------------CGACACA....................2440.25101000000000
.................................................................................................................................................................................................................GG-----------------------------------CGACACACTCACCAGCAACA.......2240.25101000000000
......................................................................................................................................................................................................ATGCATCAGGCGG-----------------------------------CGACACACTCACC..............2640.25101000000000
........................................................................................................................................................................................................................................................ACACACTCACCAGCAACA.......1840.25101000000000
GTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAATGCATCAGGCGG-----------------------------------...........................2340.25101000000000
............................................................................................................................................................................................................CAGGCGG-----------------------------------CGACACACTCACCAGC...........2340.25101000000000
............................................................................................................................................................................................................CAGGCGG-----------------------------------CGACACACTCACCAG............2240.25101000000000
....................................................................................................................................................................................................AAATGCATCAGGCGG-----------------------------------CGACACACT..................2440.25101000000000
....................................................................................................................................................................................................AAATGCATCAGGCGG-----------------------------------CGACACACTCACC..............2840.25100100000000
....................................................................................................................................................................................................AAATGCATCAGGCGG-----------------------------------CGACA......................2040.25101000000000
..................................................................................................................................................................................................TGAAATGCATCAGGCGG-----------------------------------TTT........................20140.07100100000000
droEre2
GTAGCAGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGACAACG-------ACAA----CAGTACCGGCG------ACAACGGCAGCAGCGGCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 07:16 AM