dan_3357

Name	Class	Family	Strand
Nobel_I-int	LTR	Pao	-

----------------------------------------------####--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAGAGCTATGCTTGCACGAGTCGAATTTTCATGTGGGTCCACGAGCATGGGTGAGTCCCTTGCAACAGCGTGTTTGGATAGTAAACGCGCAAGAAGTCTGCAGTCAGAAAGTACGGTCATGCATACGCTGTTTTAAATGCAAGCCTCATCTGATAACTAAAATCATGGGTGAATCCCTTAGATCGAATCCGTGCTCACGAGAATTTCTGTGGCCCTAATGAGACGACATTTTAAATCCGTGGTAGGCCTCC ***********************************************************************(((.((...(((((((((.((..((((....))))........)).)))....)).))))...)).)))........***************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	V039 embryo	M058 embryo	V106 head
.........................................................................TTGGATAGTAAACGCGCAAGAAGTCTG.......................................................................................................................................................	27	0	5	0.20	1	1	0	0	0
........................................ACGAGGATGGGTGACCCCCT...............................................................................................................................................................................................	20	3	5	0.20	1	0	0	0	1
..........................................................................TGGATAGTAAACGCGCAAGAAGTCTG.......................................................................................................................................................	26	0	5	0.20	1	1	0	0	0
.........................................................................TTGGATAGTAAACGCGCAAGAAGT..........................................................................................................................................................	24	0	5	0.20	1	0	0	1	0
..........................................................................TGGATAGTAAACGCGCAAGAAGT..........................................................................................................................................................	23	0	5	0.20	1	1	0	0	0
....................................................................................................................................................................................................ACGAGTCTTACTGTGGCCC....................................	19	3	6	0.17	1	0	1	0	0
.........................................................................TTAGATAGTAAACGCGCAACAAGT..........................................................................................................................................................	24	2	7	0.14	1	0	1	0	0
...........................................................................................................................TACGCTGTTTTAAATGCAAGCCTCATC.....................................................................................................	27	0	20	0.05	1	1	0	0	0
..................AGTCGAATTTTCATGTGGGTCCACGAG..............................................................................................................................................................................................................	27	0	20	0.05	1	1	0	0	0
........................................................................................................................................................CTTACTAAAATCATGGGTC................................................................................	19	3	20	0.05	1	0	0	1	0

GTCTCGATACGAACGTGCTCAGCTTAAAAGTACACCCAGGTGCTCGTACCCACTCAGGGAACGTTGTCGCACAAACCTATCATTTGCGCGTTCTTCAGACGTCAGTCTTTCATGCCAGTACGTATGCGACAAAATTTACGTTCGGAGTAGACTATTGATTTTAGTACCCACTTAGGGAATCTAGCTTAGGCACGAGTGCTCTTAAAGACACCGGGATTACTCTGCTGTAAAATTTAGGCACCATCCGGAGG ***************************************************************************************************(((.((...(((((((((.((..((((....))))........)).)))....)).))))...)).)))........***********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V039 embryo	V106 head	V055 head	V105 male body
.......................................................................................................................................................................CCACTAACGGAATCTAGC..................................................................	18	2	2	0.50	1	0	1	0	0	0	0
..........................................................................................................CTTTCGTGCCAGTACCTATGCGACAA.......................................................................................................................	26	2	6	0.33	2	0	0	2	0	0	0
.........................................................GGAACGTTGTCGCACAAACCTATCAT........................................................................................................................................................................	26	0	3	0.33	1	1	0	0	0	0	0
............................................................................................................TTCATGCCAGTACGTATGCGAC.........................................................................................................................	22	0	4	0.25	1	1	0	0	0	0	0
...................................................................................................CGTCAGTCTTTCATGCCAGTACGCAT..............................................................................................................................	26	1	5	0.20	1	0	1	0	0	0	0
..................................................................................................ACGTCAGTCTTTCATGCCAGTACGTAT..............................................................................................................................	27	0	5	0.20	1	1	0	0	0	0	0
.........CGAACGTGCTCAGCTTAAAAGTACAGC.......................................................................................................................................................................................................................	27	1	6	0.17	1	0	1	0	0	0	0
.................................................................................................................................CAAAATTTACGTTCGGAGTAGACTAT................................................................................................	26	0	8	0.13	1	1	0	0	0	0	0
.................................................................................................................................CAAAATTTACGTTCGGAGTAGACTATT...............................................................................................	27	0	8	0.13	1	1	0	0	0	0	0
...............................................................TTGTCGCACAAACCTATCAT........................................................................................................................................................................	20	0	9	0.11	1	1	0	0	0	0	0
................GCTCAGCTTAAAAGTACACCCAGGTGCT...............................................................................................................................................................................................................	28	0	20	0.10	2	1	1	0	0	0	0
............ACGTGCTCAGCTTAAAAGTACACCCAG....................................................................................................................................................................................................................	27	0	20	0.10	2	2	0	0	0	0	0
......................................................................................................................................................TCTATTGATGCTAGTACCC..................................................................................	19	3	14	0.07	1	0	0	0	0	1	0
..............................................................GTTGTCGCACTCACATATCA.........................................................................................................................................................................	20	3	16	0.06	1	0	0	0	1	0	0
.................................................................................................................GCCAGTACGTATGCGACAA.......................................................................................................................	19	0	20	0.05	1	0	0	0	1	0	0
................................................................................................................................ACAAAATTTACGTTCGGAGTAGACTA.................................................................................................	26	0	20	0.05	1	1	0	0	0	0	0
...............................................................................................................ATGCCAGTACGTATGCGACAAAATTT..................................................................................................................	26	0	20	0.05	1	0	0	0	0	0	1
.................................................................................................................GCCAGTACGTATGCGACAAAATTTA.................................................................................................................	25	0	20	0.05	1	1	0	0	0	0	0
..............................................................................................................CATGCCAGTACGTATGCGACAAAATT...................................................................................................................	26	0	20	0.05	1	1	0	0	0	0	0
.............................................................................................................TCATGCCAGTACGTATGCGACAAAAT....................................................................................................................	26	0	20	0.05	1	0	1	0	0	0	0
.............CGTGCTCAGCTTAAAAGTACACCCAGGT..................................................................................................................................................................................................................	28	0	20	0.05	1	1	0	0	0	0	0
..............GTGCTCAGCTTAAAAGTACACCCAGGT..................................................................................................................................................................................................................	27	0	20	0.05	1	1	0	0	0	0	0
..................................................................................................................CCAGTACGTATGCGACAAAATTTACG...............................................................................................................	26	0	20	0.05	1	0	1	0	0	0	0
.................................................................................................................GCCAGTACGTATGCGACAAAATTTAC................................................................................................................	26	0	20	0.05	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13469:295244-295494 -	dan_3357	CAGAGCTATGC-------TTGCACGAGTCGAATTTTCATGTGGGTCCACGAGCATGGGTGAGTCCCTTGCAACAGCGTGTTTGGATAGTAAACGCGCAAGAAGTCTGCAGTCAGAAAGTACGGTCATGCATACGCTGTTTTAAATGCAAGCCTCATCTGATAACTAAAAT----CATGGGTGAAT--CCCTTAGATCGAATCCG-TGCTCA---------------------CGAGAATTTCTGTGGCCCTAATGAGACGACATTTTAAATCCGTGGTAGGCCTCC
droBip1	scf7180000394912:11297-11577 -		CAGAGCTTCGTCCGATACTTGCACGAGTCGAATTTTCATGTGGGTCCACGAGCACTTGTGAGTCTTTTGCGACAGCGCATTTGGATCGTAAATGCGCAGGAAGTCTGCAGTCAGACAGTACGGTCATGCATACGCTGCTTTAAATGCAAGCCTCATCTGATGACTCAAAT----CATGGGTGATTTACCCTTAGATAGAATTCG-TGCTCTCCGCCCATTCTCCATATGTGGTGTTGATTTTTGTGGCCCTATTGATACGACATTGAAAATTCGTGGTAGGCCACC
droKik1	scf7180000302050:5851-6131 +		CAGAGCTACGTCCGGTATCTGCACCACTCAAAATTTCATGTTGGCCCTTGAGCACTTGTGAGCATCCTACGACAGCGTATATGGACTGTAAACGCTCAGGAACTCTGCAGTCAGACAGTTCGGTCATGTGTGCGCTGCTTCAAATGCAAGCCCCGACTGATGACGCAAAT----TATGGGAAATTTGCCCGCAGATAGGCTCCG-TGCTCTCCGCCCATTTGCGATATGTGGAATCGATTTCAGTGGCCCCGTCTATACGACATTAAAGATTAGAGGAAGGCCATC
droFic1	scf7180000453179:704-983 +		CAGAGCTATGTCCGGCATTTGCATCTAACCAATTTTCATGTCGGGCCACGAGCACTTGTGAGTCTCCTGCGACAGCGTATTTGGATCGTAAACGCTCAGGAGGTCTGCAGTCAAAT-GTTCGATCATGTATTCGCTGCTTTAAATGCAAGCCTCGACTAATGACACAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCG-TGCTCTCCGCCCATTTAGTATCTGTGGCGTTGATTTTTGTGGCCCCGTCTATACGACATTGAAAATTCGTGGAAGGCCTCC
droEle1	scf7180000488243:13629-13888 +		CAGAGCTATGTCCGGCATCTGCACATTTCCAATTTTCATTTGGGTCCACGAGCACTCGTGGGTATCCTTCGACAGCGTGTTTGGATCGTTAACGCTCAGAAGGTCTGTAGTCAAACAGTTCGATCATGTATACGCTGCTTTAAGTTCAAGCCTCGACTGATGACACAAAT----TATGGGAAATTTACCAGCAGACAGACTCCG-TGCT---------------------GGCATTTATTTTTGTGGTCCAGCTTATACGACATTGAAAATTCGTGGAAGGCCTCT
droRho1	scf7180000771504:4495-4766 +		CAGAGCTATGTTC---------ACCATTCCAATTTTCATGTTGGTCCACGAGCCCTTGTGAGTCTCCTCCGACAGCGTATTTGGATCGTAAACGCCCAGGAGGTCTGCAGTCAGATAGTTTGATCATGCATACGCTGCTTTAAGTGTAAGCCTCGACTAATGACACAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCG-TGCTCTCCGCCCATTTGCTATATGTGGCGTTGATTTTTGTGGCCCTGTCTATACGACATTGAAAATTCGTGGTAGGCCTCC
droBia1	scf7180000302480:7023-7301 +		CAGAGTTATGTCCGGCATCTGCACCATTCCAATTTTCATGTTGGCTTACAAGCACTTATAAGTCTCCTTTAACATCGTATTTGGTTCATAAATGCTTAAGAGTTCTGCATTCAGACAGTTCGATCAAGAATATGCTGCTTTAAGTTCAAGCCTCGATTGATGACACAAAT----TATGGGAAGTTTACCCGCAAAT---CTCCGATGCTCTCCGCCCATTTTCTATATGTGGCGTTAATTTTTGTGGCCCTGTCTATACAACACTGAAAATTCGTAATAGGTCTCC
droTak1	scf7180000410961:1745-2025 +		CAGAGCTATGTCCGGCATCTGCACCATTCTAATTTTCATGTTGGTCCACGAGCACTTGTGAGTCTCCTTCGACAGCGAATTTGGATCGTAAACGCTCAGGAGGTCTGCAGTCAGACAGTTCGATCATGTATCCGCTGCTTCAAGTGCAAGCCTCGACTGATGACGCAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCG-TGCTCTCCGCCCATTTGCTATATGTGGCGTTGATTTTTGTGGCCCTGTCTATACAACACTGAAAATTCGTGGTAGGCCTCC
droEug1	scf7180000408811:12436-12696 +		AAATCTTACGTGTCATACCTGCACGTTACGAATTGTCACGCTGGTCGTCGAGCTCTTGTAAGTCTTCTGCGCGAAAAAGTATGGTTAGTCAATGCTCAAGAAGTATGTCGCCGAACTGTTCGTTCGTGCACGCGCTGCTTCCGGTGCAAGCCGCAACT--TGACGCAAAT----AATGGGGAACTTGCCATCAGATTGACTTCG-AGCTCTCTGCCGTT-CA--ATA---------------TCTGGACCATTTAGCACAAGCCATCGTATTCGTAGCAAGCCACC
dm3	chrU:488894-489133 +		CTGACCTACATCCGGCATATGCACCATT-------------CGGCCCACGAGCACGTGTGAGC----------ACCGTATTTGGTT------CGCTCAGGAACTTTGAAGTCAGACAGTTCGATTACGTGTGCGCTGTTCTAAATGCAAGCCTCGACTGATGGGA-AATC----TATGGGAAATCTACCCGCAGATAGACTCCT-TCCTTACC-TTCATATGAAATATTTGGCGGTAATTTTTGTGG----------ACGACATTGAAAATTGGAGGAAGGTCTCC
droSim2	node_41272:215-495 +		CAGAGCTACGTCCGGCATTTGCACCATTCCAATTTTCATGTCGGCCCTCGAGCACTTGTGAGCATCCTACGACAGCGTATTTGGACCGTAAACGCTCAGGAACTCTGCAGTCAGACAGTTCGATCATGTGTGCGCTGCTTCAAATGCAAGCCTCGACTGATGACACAAAT----TATGGGAAATCTACCCGCAGATAGACTCCG-TGCTCTCCGCCCATTTGCGATATGTGGCGTTGATTTTTGTGGCCCTGTCTATACGACATTAAAAATTCGAGGAAGGCCCCC
droSec2	scaffold_111:15688-15955 -		CAGAGCTAGTTTCGGCATCTGAACCATTCAAATTTTCATGTAAGCCCGCGAGCCCTTTTGAGCATCCTACGACAGCGTATTTGGATCGTAAACGCTTAGGAACTTTGCAGT---------CGATCATGTGTGCGCTGTGTTTAATTCAAGCCTCGACCGATGACACAAAT----TATGGGAAA----CCCGCAGATAGACTCCC-TACTCTCCGCCCATTTGCGATATGTGGCTTTGATTTTTGTGGACCTGTCTATACAACATTGAAAATTCGAGGAAGGCCTCA
droYak3	v2_chrUn_004:335605-335869 +		CAGATCTACGTCCGGCATTTGCACCATTCCAATTTTCGTGTCGGCCCTGGAGCACTTTTGAGCATCCTACGACAGCGTATTTGGACCGTAAACGCTCAGGAACTCTGCAGTCAGACAGTTCGATCATGTGTGCGCTGCTTCAAATGCAAGCCTCGACTGATGATACAAAT----TATGGGAAATCTACCCGCAGATAGACTCCG-TGCTCTCGGCC-AT---------------TTGATTTTTGTGGCCCTGTCTATACGACATTACAAATTCGAGGAAGGCCCCC
droEre2	scaffold_4929:22600643-22600922 +		CAGAGCTACGTCCGGCATATGCACCTTTCAAACTTTCATGTCGGCCCTCGAGCACTTGTGAGCATCCTACGACAGCGTATTTGGGCCGTAAACGCTCAGGAACTCTGAAGTCAGACAGTTCGATAATGTTTGCGATGCTTTAAATGCAAGCCTCGACTAATGACACAAAT----TATGGGAAATCTACCCGCAGATAAACTCCG-TGCTCTCCTCTCATTTACGATATGTGGCGTTGATTCTTGTGGCCC-GTCTATTCGACATTGAAAATTCAAGGAAGGCCTCC
dp5	Unknown_group_354:1417-1697 +		CGAAGCTATATTCGTCATTTGCTCGATTCGAATTCTCATGTCGGCCCACGAGCACTTGTGAGCATCCTTCGACAGAGCGTTTGGACAGTGAACGCTCAGGAGGTCTGCCGTCAGACAGTTCGATCGTGTATGCGCTGTTTTAAATGCAAGCCTCGATTGCTGACGCAACT----CATGGGGAATCTACCCGCAGATCGACTCCG-TGCTCTCCGCCCATTTTCAATTTGCGGCGTTGATTTTTGTGGACCAGTGCACACGACATTGAAAATTCGCGGAAGGCCCCC
droPer2	scaffold_496:1264-1511 +		CGAAGCTATATTCGTCATCTGCACCATTCGAATTTTCATGTCGGCCCACGAGAACTTGTGAGCATCCTTCGACAGAGCGTGTGGATAGTGAACGCTCAGGAGGTCTGCCGTCAGACAGTTCGATCATGTATGCGCTGTTTTAAATGCAAGCCTCGATTGCTGACGCAACT----CATGGGGAATTTACCCGCAGATCGACTCCG-TGCTCTCCGCCCA---------------------------------GTGCATGCAACATCGAAAATTCGCGGAAGGCCCCC
droWil2	scf2_1100000004961:4756642-4756926 +		CGAAGCTATGTCCGTCATCTCCATTTATCGAATTGTCATGTTGGCCCAAGAGCTTTAGTGAGCACCCTGCGTGAACAGCTATGGGTTGTTAAAGCTTTAGAAGTCTTCCGTCAGACAGTGAGGTCTTGTGTATTATGTTTTAAATACAAGCCACCTCTTATGACGCAAATATGTAATGGGAAATTTTCCGGCAGACAGAGTTAG-AGAGCTCCGCCCATTCAGCATTTGCGGCGTAGATTTTTGTGGTACAGTACACATAACATTGAAAATTCGAGGAAGGCCTCC
droVir3	scaffold_12958:1679747-1680024 +		ATAAGCTTTATTAGATACCCGCACTTGTAGGATTACCATTCTGGTCCAAGAGAAGTTGTGAGTCTTCTTCATTAGCGACTTTGGCTAATTAACGCTCAACAGGTCTGTCGTCAGGCAGTAAGAACATGCATCCGTT--TTTAAATGCAAACCTCATTTGCTAATTCAAAT----TATGA-AAATTAACCAGCAGGTCGACTCTG-AGCGTTTCGCCCATTTTCTATATCTGGTGTCGATTTTTGTAGACCAATTAGCACGACCTTTCGAATGCGTTCAAGGCCTAC
droMoj3	scaffold_6498:2826174-2826429 -		T------------------TGCATCGCTCTCATTGCCACGCCAATCCACTGGTACGAATGGGCCTGCTTCGTCAGCAGGTGTGGCTGGTCAATGCTCGAGAGGCTTGCAGTGCAGTAGTTAGAAAATGCGTACATTGTTTTCGCTACAAACCGAAACTCTTATCCCAAAT----AATGGG-------CCCGCTGACTGCTTACA-TGGTAATAGGCCATTTGAGATCAGTGGAGTGGACTTTTGTGGTCCAATACTAGTTTCGCTGGGAATTCGTGGCAAATCGCC
droGri2	scaffold_15127:121556-121806 -		AACTGC------------------------------CATGCTGGACCTAAAGCTTTAGTGGCACTCATTCGATTGAAATATTGGATCGTAAACGCCAGAGACTTGGCACGTCGCATCGTGCGAACCTGCATGCCGTGTGTTCGGTACAAGCCAAAATTGGAAAGGCAGCT----TATGGGATCGCTGCCAGTGGAGCGCCTTCG-ACCGGAACACCCATTCCAACGCTGTGGTATCGACTTCTGTGGGCCAATAAATACGTATGTTCGCATACGAGGAAAGAGTCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CAGAGCTATGC-------TTGCACGAGTCGAATTTTCATGTGGGTCCACGAGCATGGGTGAGTCCCTTGCAACAGCGTGTTTGGATAGTAAACGCGCAAGAAGTCTGCAGTCAGAAAGTACGGTCATGCATACGCTGTTTTAAATGCAAGCCTCATCTGATAACTAAAAT----CATGGGTGAAT--CCCTTAGATCGAATCCG-TGCTCA---------------------CGAGAATTTCTGTGGCCCTAATGAGACGACATTTTAAATCCGTGGTAGGCCTCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................TTGGATAGTAAACGCGCAAGAAGTCTG...................................................................................................................................................................................	27	5	0.20	1	1	0	0	0	0	0
.................................................................................TGGATAGTAAACGCGCAAGAAGTCTG...................................................................................................................................................................................	26	5	0.20	1	1	0	0	0	0	0
................................................................................TTGGATAGTAAACGCGCAAGAAGT......................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0
.................................................................................TGGATAGTAAACGCGCAAGAAGT......................................................................................................................................................................................	23	5	0.20	1	1	0	0	0	0	0
..................................................................................................................................TACGCTGTTTTAAATGCAAGCCTCATC.................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.........................AGTCGAATTTTCATGTGGGTCCACGAG..........................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0

droBip1

CAGAGCTTCGTCCGATACTTGCACGAGTCGAATTTTCATGTGGGTCCACGAGCACTTGTGAGTCTTTTGCGACAGCGCATTTGGATCGTAAATGCGCAGGAAGTCTGCAGTCAGACAGTACGGTCATGCATACGCTGCTTTAAATGCAAGCCTCATCTGATGACTCAAAT----CATGGGTGATTTACCCTTAGATAGAATTCG-TGCTCTCCGCCCATTCTCCATATGTGGTGTTGATTTTTGTGGCCCTATTGATACGACATTGAAAATTCGTGGTAGGCCACC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGAGCTACGTCCGGTATCTGCACCACTCAAAATTTCATGTTGGCCCTTGAGCACTTGTGAGCATCCTACGACAGCGTATATGGACTGTAAACGCTCAGGAACTCTGCAGTCAGACAGTTCGGTCATGTGTGCGCTGCTTCAAATGCAAGCCCCGACTGATGACGCAAAT----TATGGGAAATTTGCCCGCAGATAGGCTCCG-TGCTCTCCGCCCATTTGCGATATGTGGAATCGATTTCAGTGGCCCCGTCTATACGACATTAAAGATTAGAGGAAGGCCATC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAGAGCTATGTCCGGCATTTGCATCTAACCAATTTTCATGTCGGGCCACGAGCACTTGTGAGTCTCCTGCGACAGCGTATTTGGATCGTAAACGCTCAGGAGGTCTGCAGTCAAAT-GTTCGATCATGTATTCGCTGCTTTAAATGCAAGCCTCGACTAATGACACAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCG-TGCTCTCCGCCCATTTAGTATCTGTGGCGTTGATTTTTGTGGCCCCGTCTATACGACATTGAAAATTCGTGGAAGGCCTCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGAGCTATGTCCGGCATCTGCACATTTCCAATTTTCATTTGGGTCCACGAGCACTCGTGGGTATCCTTCGACAGCGTGTTTGGATCGTTAACGCTCAGAAGGTCTGTAGTCAAACAGTTCGATCATGTATACGCTGCTTTAAGTTCAAGCCTCGACTGATGACACAAAT----TATGGGAAATTTACCAGCAGACAGACTCCG-TGCT---------------------GGCATTTATTTTTGTGGTCCAGCTTATACGACATTGAAAATTCGTGGAAGGCCTCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAGAGCTATGTTC---------ACCATTCCAATTTTCATGTTGGTCCACGAGCCCTTGTGAGTCTCCTCCGACAGCGTATTTGGATCGTAAACGCCCAGGAGGTCTGCAGTCAGATAGTTTGATCATGCATACGCTGCTTTAAGTGTAAGCCTCGACTAATGACACAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCG-TGCTCTCCGCCCATTTGCTATATGTGGCGTTGATTTTTGTGGCCCTGTCTATACGACATTGAAAATTCGTGGTAGGCCTCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGAGTTATGTCCGGCATCTGCACCATTCCAATTTTCATGTTGGCTTACAAGCACTTATAAGTCTCCTTTAACATCGTATTTGGTTCATAAATGCTTAAGAGTTCTGCATTCAGACAGTTCGATCAAGAATATGCTGCTTTAAGTTCAAGCCTCGATTGATGACACAAAT----TATGGGAAGTTTACCCGCAAAT---CTCCGATGCTCTCCGCCCATTTTCTATATGTGGCGTTAATTTTTGTGGCCCTGTCTATACAACACTGAAAATTCGTAATAGGTCTCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAGAGCTATGTCCGGCATCTGCACCATTCTAATTTTCATGTTGGTCCACGAGCACTTGTGAGTCTCCTTCGACAGCGAATTTGGATCGTAAACGCTCAGGAGGTCTGCAGTCAGACAGTTCGATCATGTATCCGCTGCTTCAAGTGCAAGCCTCGACTGATGACGCAAAT----TATGGGAAATTTACCCGCAGATCGTCTCCG-TGCTCTCCGCCCATTTGCTATATGTGGCGTTGATTTTTGTGGCCCTGTCTATACAACACTGAAAATTCGTGGTAGGCCTCC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAATCTTACGTGTCATACCTGCACGTTACGAATTGTCACGCTGGTCGTCGAGCTCTTGTAAGTCTTCTGCGCGAAAAAGTATGGTTAGTCAATGCTCAAGAAGTATGTCGCCGAACTGTTCGTTCGTGCACGCGCTGCTTCCGGTGCAAGCCGCAACT--TGACGCAAAT----AATGGGGAACTTGCCATCAGATTGACTTCG-AGCTCTCTGCCGTT-CA--ATA---------------TCTGGACCATTTAGCACAAGCCATCGTATTCGTAGCAAGCCACC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CTGACCTACATCCGGCATATGCACCATT-------------CGGCCCACGAGCACGTGTGAGC----------ACCGTATTTGGTT------CGCTCAGGAACTTTGAAGTCAGACAGTTCGATTACGTGTGCGCTGTTCTAAATGCAAGCCTCGACTGATGGGA-AATC----TATGGGAAATCTACCCGCAGATAGACTCCT-TCCTTACC-TTCATATGAAATATTTGGCGGTAATTTTTGTGG----------ACGACATTGAAAATTGGAGGAAGGTCTCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................TGCAAGCCTCGACTGATGGGA-AATC----................................................................................................................	25	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GCTCAGGAACTTTGAAGTCAGACAGT.......................................................................................................................................................................	26	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	3	3	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TCAGGAACTTTGAAGTCAGACAGT.......................................................................................................................................................................	24	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	2	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................GACTGATGGGA-AATC----TATGGGAAATC.....................................................................................................	26	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	7	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CTAAATGCAAGCCTCGACTGATGGGA-........................................................................................................................	26	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................GAAGTCAGACAGTTCGATTACGTGTGC.........................................................................................................................................................	27	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TAAATGCAAGCCTCGACTGATGGGA-AA......................................................................................................................	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................CTCAGGAACTTTGAAGTCAGACAGT.......................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................ATTACGTGTGCGCTGTTCTAAATGC...........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CGACTGATGGGA-AATC----TATGGGAAA.......................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ACGTGTGCGCTGTTCTAAATG............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CTCGACTGATGGGA-AATC----TAT.............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................GACTGATGGGA-AATC----TATGGG..........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TACATCCGGCATATGCACCAT...................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ACCCGCAGATAGACTCCT-TCG..............................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAGAGCTACGTCCGGCATTTGCACCATTCCAATTTTCATGTCGGCCCTCGAGCACTTGTGAGCATCCTACGACAGCGTATTTGGACCGTAAACGCTCAGGAACTCTGCAGTCAGACAGTTCGATCATGTGTGCGCTGCTTCAAATGCAAGCCTCGACTGATGACACAAAT----TATGGGAAATCTACCCGCAGATAGACTCCG-TGCTCTCCGCCCATTTGCGATATGTGGCGTTGATTTTTGTGGCCCTGTCTATACGACATTAAAAATTCGAGGAAGGCCCCC

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

CAGAGCTAGTTTCGGCATCTGAACCATTCAAATTTTCATGTAAGCCCGCGAGCCCTTTTGAGCATCCTACGACAGCGTATTTGGATCGTAAACGCTTAGGAACTTTGCAGT---------CGATCATGTGTGCGCTGTGTTTAATTCAAGCCTCGACCGATGACACAAAT----TATGGGAAA----CCCGCAGATAGACTCCC-TACTCTCCGCCCATTTGCGATATGTGGCTTTGATTTTTGTGGACCTGTCTATACAACATTGAAAATTCGAGGAAGGCCTCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................TAATTCAAGCCTCGACCGATG............................................................................................................................	21	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................TAGACTCCC-TACTCTCCGCC......................................................................	20	1	1.00	1	1	0	0	0
.....CTAGTTTCGGCATCTGAACCA....................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..............GCATCTGAACCATTCAAATTT...........................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................ATATGTGGCTTTGATTTTTGT.........................................	21	1	1.00	1	0	0	1	0
...................................................................TACGACAGCGTATTTGGATCG......................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..............................................................................................................................TGTGTGCGCTGTGTTTAATTC...........................................................................................................................................	21	1	1.00	1	0	0	1	0
................................TTTTCATGTAAGCCCGCGAGC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.................................TTTCATGTAAGCCCGCGAGCC........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0

droYak3

CAGATCTACGTCCGGCATTTGCACCATTCCAATTTTCGTGTCGGCCCTGGAGCACTTTTGAGCATCCTACGACAGCGTATTTGGACCGTAAACGCTCAGGAACTCTGCAGTCAGACAGTTCGATCATGTGTGCGCTGCTTCAAATGCAAGCCTCGACTGATGATACAAAT----TATGGGAAATCTACCCGCAGATAGACTCCG-TGCTCTCGGCC-AT---------------TTGATTTTTGTGGCCCTGTCTATACGACATTACAAATTCGAGGAAGGCCCCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................CTTTTGAGCATCCTACGACAGCGTA...............................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................CAGTCAGACAGTTCGATCATGTGTG..........................................................................................................................................................	25	20	0.95	19	0	19	0	0	0	0	0	0	0	0	0
...........................................................................................................CAGTCAGACAGTTCGATCATGTGT...........................................................................................................................................................	24	20	0.45	9	0	6	0	0	0	0	3	0	0	0	0
.........................................................................................................................................................................................TACCCGCAGATAGACTCCG-TGCTCTC..........................................................................	26	20	0.35	7	0	4	3	0	0	0	0	0	0	0	0
...........................................................................................................CAGTCAGACAGTTCGATCATGTG............................................................................................................................................................	23	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
...........................................................................................................CAGTCAGACAGTTCGA...................................................................................................................................................................	16	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5
................................................................TCCTACGACAGCGTATTTGGACCGTA....................................................................................................................................................................................................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
............................................................................................................AGTCAGACAGTTCGATCATGTGTG..........................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TCTACCCGCAGATAGACTCCG-TGCTCTC..........................................................................	28	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................GCTTCAAATGCAAGCCTCGACTGATGA...........................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TCTACCCGCAGATAGACTCCG-TGCTCT...........................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGATTTTTGTGGCCCTGTCTATACGA.........................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................GAGCATCCTACGACAGCGTATTTG...........................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................CAGTCAGACAGTTCGATCATGT.............................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TTTTTGTGGCCCTGTCTATACGACAT......................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................GTCAGACAGTTCGATCATGTGTG..........................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGATTTTTGTGGCCCTGTCTATACGAC........................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CCCGCAGATAGACTCCG-TGCTCTC..........................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................TCAGACAGTTCGATCATGTGTGCGC.......................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................TACGACAGCGTATTTGGACCGTAAACGC...............................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CAGAGCTACGTCCGGCATATGCACCTTTCAAACTTTCATGTCGGCCCTCGAGCACTTGTGAGCATCCTACGACAGCGTATTTGGGCCGTAAACGCTCAGGAACTCTGAAGTCAGACAGTTCGATAATGTTTGCGATGCTTTAAATGCAAGCCTCGACTAATGACACAAAT----TATGGGAAATCTACCCGCAGATAAACTCCG-TGCTCTCCTCTCATTTACGATATGTGGCGTTGATTCTTGTGGCCC-GTCTATTCGACATTGAAAATTCAAGGAAGGCCTCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dp5

CGAAGCTATATTCGTCATTTGCTCGATTCGAATTCTCATGTCGGCCCACGAGCACTTGTGAGCATCCTTCGACAGAGCGTTTGGACAGTGAACGCTCAGGAGGTCTGCCGTCAGACAGTTCGATCGTGTATGCGCTGTTTTAAATGCAAGCCTCGATTGCTGACGCAACT----CATGGGGAATCTACCCGCAGATCGACTCCG-TGCTCTCCGCCCATTTTCAATTTGCGGCGTTGATTTTTGTGGACCAGTGCACACGACATTGAAAATTCGCGGAAGGCCCCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGACG.........................................................................................................................	24	8	41.38	331	0	319	2	0	1	0	0	6	3	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGACGC........................................................................................................................	25	8	40.38	323	0	280	36	1	5	0	1	0	0	0
.............................................................................................................................................................................................................................................................GCACACGACATTGAAAATTCGCGG.........	24	8	29.13	233	0	228	0	1	2	1	0	0	1	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGACGC........................................................................................................................	24	8	13.75	110	0	110	0	0	0	0	0	0	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGACG.........................................................................................................................	23	8	13.00	104	0	104	0	0	0	0	0	0	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGACGCAAC.....................................................................................................................	28	8	9.50	76	0	64	7	0	0	0	0	4	1	0
.............................................................................................................................................................................................................................................................GCACACGACATTGAAAATTCGCG..........	23	8	7.63	61	0	61	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCAATTTGCGGCGTTGATTTTTGTGG.......................................	26	6	6.00	36	0	7	1	0	0	0	1	8	19	0
.............................................................................................................................................................................................................................................................GCACACGACATTGAAAATTCGCGGA........	25	8	5.50	44	0	39	2	0	0	0	0	0	3	0
.............................................................................................................................................................................................................................TCAATTTGCGGCGTTGATTTTTGTGGA......................................	27	6	5.50	33	0	3	0	0	0	0	0	2	28	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGACGCA.......................................................................................................................	26	8	4.38	35	0	32	1	0	1	0	0	1	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGAC..........................................................................................................................	22	8	4.38	35	0	35	0	0	0	0	0	0	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGAC..........................................................................................................................	23	8	3.50	28	0	26	2	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGGCGTTGATTTTTGTGGACC....................................	23	5	2.80	14	0	6	0	0	0	0	0	3	5	0
...................................................................................................................................................................................................................................TGCGGCGTTGATTTTTGTGG.......................................	20	6	2.33	14	0	5	0	0	0	0	0	0	9	0
.............................................................................................................................................................................................................................................................GCACACGACATTGAAAATTCGC...........	22	8	2.25	18	0	17	0	0	1	0	0	0	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGACGCAA......................................................................................................................	27	8	2.13	17	0	16	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCAGATCGACTCCG-TGCTCTCCGC.......................................................................	24	7	2.00	14	0	12	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................TACCCGCAGATCGACTCCG-TGCTC............................................................................	24	8	1.88	15	1	12	2	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGGCGTTGATTTTTGTGGAC.....................................	22	6	1.67	10	0	4	0	0	0	0	0	1	5	0
.............................................................................................................................................................................................................................................................GCACACGACATTGAAAATTCGCGGAA.......	26	8	1.63	13	0	12	1	0	0	0	0	0	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTG............................................................................................................................	21	9	1.44	13	0	13	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCAGATCGACTCCG-TGCTCTCCGCC......................................................................	25	7	1.43	10	0	8	0	0	0	0	0	0	2	0
..............................................................................................................................................................................................GCAGATCGACTCCG-TGCTCTCCGCCCA....................................................................	27	7	1.43	10	0	9	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................CACACGACATTGAAAATTCGCGG.........	23	8	1.38	11	0	11	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TACCCGCAGATCGACTCCG-TGCTCT...........................................................................	25	8	1.38	11	0	9	2	0	0	0	0	0	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGACGCAAC.....................................................................................................................	27	8	1.38	11	0	9	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................CGCAGATCGACTCCG-TGCTCTCCG........................................................................	24	8	1.38	11	0	9	0	0	0	0	0	2	0	0
...................................................................................................................................................................................................................................TGCGGCGTTGATTTTTGTGGA......................................	21	6	1.33	8	0	2	0	0	0	0	0	0	6	0
.........................................................................................................................................................................................TACCCGCAGATCGACTCCG-TGCT.............................................................................	23	8	1.25	10	0	8	1	0	0	0	1	0	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGA...........................................................................................................................	22	9	1.22	11	0	11	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTTGCGGCGTTGATTTTTGTGGA......................................	23	6	1.17	7	0	0	0	0	0	0	0	0	7	0
.........................................................................................................................................................................................TACCCGCAGATCGACTCCG-TGCTCTC..........................................................................	26	8	1.13	9	0	7	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................GCAGATCGACTCCG-TGCTCTCCG........................................................................	23	8	1.13	9	0	9	0	0	0	0	0	0	0	0
................................................................................TTGGACAGTGAACGCTCAGGAGGTC.....................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTTGCGGCGTTGATTTTTGTGG.......................................	22	6	1.00	6	0	0	0	0	0	0	0	0	6	0
.............................................................................CGTTTGGACAGTGAACGCTCAGG..........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................TGGACAGTGAACGCTCAGGAGGTC.....................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCCG-TGCTCTCCGCCCATTTTCAATT...........................................................	26	8	1.00	8	0	7	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTGCGGCGTTGATTTTTGTGG.......................................	21	6	1.00	6	0	1	0	0	0	0	0	0	5	0
...................................................................TTCGACAGAGCGTTTGGACAGTGAACG................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTTGCGGCGTTGATTTTTGTGGACC....................................	25	5	1.00	5	0	0	0	0	0	0	0	4	1	0
.................................TCTCATGTCGGCCCACGAGCACTA.....................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................TCTCATGTCGGCCCACGAGCACTTG....................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................CATCCTTCGACAGAGCGTTTGGACA.......................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................TCTCATGTCGGCCCACGAGCACTTGG...................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................TCCTTCGACAGAGCGTTTGGACA.......................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................TGGACAGTGAACGCTCAGGAGGT......................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TACCCGCAGATCGACTCCG-TGC..............................................................................	22	10	0.90	9	0	7	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................GCACACGACATTGAAAATTCGCGA.........	24	9	0.89	8	0	8	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCAGATCGACTCCG-TGCTCTCC.........................................................................	22	8	0.88	7	0	7	0	0	0	0	0	0	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGACGCA.......................................................................................................................	25	8	0.88	7	0	7	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CGCAGATCGACTCCG-TGCTCTCCGC.......................................................................	25	7	0.86	6	0	5	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................GCAGATCGACTCCG-TGCTCTCCGCCC.....................................................................	26	7	0.86	6	0	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTGCGGCGTTGATTTTTGTGGA......................................	22	6	0.83	5	0	0	0	0	0	0	0	2	3	0
...................................................................................................................................................................................................................................TGCGGCGTTGATTTTTGTGGACCA...................................	24	5	0.80	4	0	2	0	0	0	0	0	0	2	0
..............................................................CATCCTTCGACAGAGCGTTTGG..........................................................................................................................................................................................................	22	9	0.78	7	0	7	0	0	0	0	0	0	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGACGT........................................................................................................................	25	8	0.75	6	0	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CGCAGATCGACTCCG-TGCTCTCC.........................................................................	23	8	0.75	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGACGA........................................................................................................................	24	8	0.75	6	0	6	0	0	0	0	0	0	0	0
...............................................................................................................................................ATGCAAGCCTCGATTGCTGACGC........................................................................................................................	23	8	0.75	6	0	6	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TACCCGCAGATCGACTCCG-TG...............................................................................	21	10	0.70	7	0	7	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAATTTGCGGCGTTGATTTTTGTGG.......................................	25	6	0.67	4	0	0	0	0	0	0	0	1	3	0
................................................................................................................................................TGCAAGCCTCGATTGCTGACGCAAC.....................................................................................................................	25	8	0.63	5	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGACGA........................................................................................................................	25	8	0.63	5	0	5	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGGCGTTGATTTTTGTGGACCAG..................................	25	5	0.60	3	0	1	0	0	2	0	0	0	0	0
....................................................................................................................................................................................................CGACTCCG-TGCTCTCCGCCCATTT.................................................................	24	7	0.57	4	0	0	0	0	0	0	0	0	4	0
.................................................................................................................................................................................................................................................................ACGACATTGAAAATTCGCGGAAGGCC...	26	7	0.57	4	0	1	0	0	0	0	0	3	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGC..............................................................................................................................	19	9	0.56	5	0	5	0	0	0	0	0	0	0	0
............................................................................................................................................TAAATGCAAGCCTCGATTGCTGACG.........................................................................................................................	25	8	0.50	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGACGCAACT----................................................................................................................	28	8	0.50	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CACACGACATTGAAAATTCGC...........	21	8	0.50	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CGCAGATCGACTCCG-TGCTCTC..........................................................................	22	8	0.50	4	0	3	0	0	0	0	1	0	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGACGCAACT----................................................................................................................	29	8	0.50	4	0	0	0	0	0	0	0	4	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGACA.........................................................................................................................	24	8	0.50	4	0	4	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATTTGCGGCGTTGATTTTTGTGGAC.....................................	25	6	0.50	3	0	0	0	0	0	0	0	3	0	0
.............................................................GCATCCTTCGACAGAGCGTTTGGA.........................................................................................................................................................................................................	24	8	0.50	4	0	3	0	0	0	0	1	0	0	0
...................................TCATGTCGGCCCACGAGCACTT.....................................................................................................................................................................................................................................	22	10	0.50	5	0	4	0	0	0	0	0	0	1	0
..................................................................................................................................................CAAGCCTCGATTGCTGACGCAACT----C...............................................................................................................	25	9	0.44	4	0	4	0	0	0	0	0	0	0	0
..................................................................................................................................................CAAGCCTCGATTGCTGACGCAACT----................................................................................................................	24	9	0.44	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGATTTTTGTGGACCAGTG................................	19	9	0.44	4	0	1	0	0	0	0	0	0	3	0
..................................................................................................................................................CAAGCCTCGATTGCTGACGCAACT----CA..............................................................................................................	26	9	0.44	4	0	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ACGACATTGAAAATTCGCGGAAGGC....	25	7	0.43	3	0	0	0	0	0	0	0	3	0	0
.............................................................................................................................................................................................CGCAGATCGACTCCG-TGCTCTCCGCC......................................................................	26	7	0.43	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TGCTCTCCGCCCATTTTCAATTTGC........................................................	25	7	0.43	3	0	2	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................GACATTGAAAATTCGCGGAAGGCC...	24	7	0.43	3	0	2	0	0	0	0	0	0	1	0
...............................................................................................TCAGGAGGTCTGCCGTCAGACA.........................................................................................................................................................................	22	12	0.42	5	0	3	0	0	1	0	1	0	0	0
....................................................................................................................................................................................................................................GCGGCGTTGATTTTTGTGGACCAG..................................	24	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................TCAGACAGTTCGATCGTGTATGCGCT......................................................................................................................................................	26	10	0.40	4	0	2	0	0	0	0	2	0	0	0
....................................................................................................................................................................................................................................GCGGCGTTGATTTTTGTGGACCA...................................	23	5	0.40	2	0	2	0	0	0	0	0	0	0	0
..........................................................TGAGCATCCTTCGACAGAG.................................................................................................................................................................................................................	19	13	0.38	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................TGCCGTCAGACAGTTCGATCGTGTA............................................................................................................................................................	25	8	0.38	3	0	0	0	0	0	0	2	0	1	0
............................................................................................................................................................................................................................................................TGCACACGACATTGAAAATTCGCGGAA.......	27	8	0.38	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGACGT........................................................................................................................	24	8	0.38	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGACGCAA......................................................................................................................	26	8	0.38	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TGTGGACCAGTGCACACGACATTGAAAA................	28	8	0.38	3	0	1	0	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................................................GCACACGACATTGAAAATTCGCGT.........	24	8	0.38	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAATTTGCGGCGTTGATTTTTGTGG.......................................	27	6	0.33	2	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................................................................................................AATTTGCGGCGTTGATTTTTGTGGA......................................	25	6	0.33	2	0	0	0	0	0	0	0	0	2	0
...............................................................ATCCTTCGACAGAGCGTTTGG..........................................................................................................................................................................................................	21	9	0.33	3	0	0	0	0	0	0	0	3	0	0
..................................................................................................................................................................................................................................TTGCGGCGTTGATTTTTGTGGAC.....................................	23	6	0.33	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................................CCCATTTTCAATTTGCGGCGTTGATT..............................................	26	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTTTTAAATGCAAGCCTCGATT................................................................................................................................	23	9	0.33	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGGCGTTGATTTTTGTGG.......................................	19	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................TTTTAAATGCAAGCCTCGATTG...............................................................................................................................	22	9	0.33	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TACCCGCAGATCGACTCCG-TGCTA............................................................................	24	10	0.30	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TACCCGCAGATCGACTCCG-T................................................................................	20	10	0.30	3	0	3	0	0	0	0	0	0	0	0
...................................TCATGTCGGCCCACGAGCACTTG....................................................................................................................................................................................................................................	23	10	0.30	3	0	2	0	0	0	0	0	0	1	0
.......................................................................................................TCTGCCGTCAGACAGTTCGATCC................................................................................................................................................................	23	10	0.30	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CGCAGATCGACTCCG-TGCTCTCCGCCC.....................................................................	27	7	0.29	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GATCGACTCCG-TGCTCTCCGCCC.....................................................................	23	7	0.29	2	0	1	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................CGCAGATCGACTCCG-TGCTCTCCGCCCA....................................................................	28	7	0.29	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GATCGACTCCG-TGCTCTCCGCCCAT...................................................................	25	7	0.29	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CCCATTTTCAATTTGCGGCGTTG.................................................	23	7	0.29	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CCCATTTTCAATTTGCGGCGTTGA................................................	24	7	0.29	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GATCGACTCCG-TGCTCTCCGCCCATTT.................................................................	27	7	0.29	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TGAAAATTCGCGGAAGGCCC..	20	7	0.29	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................ATGCAAGCCTCGATTGCTGACGCA.......................................................................................................................	24	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CCCGCAGATCGACTCCG-TGCTCTC..........................................................................	24	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................ATGCAAGCCTCGATTGCTGACG.........................................................................................................................	22	8	0.25	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACACGACATTGAAAATTCGCGGA........	23	8	0.25	2	0	1	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................CACACGACATTGAAAATTCGCGGA........	24	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TGTGGACCAGTGCACACGACATT.....................	23	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..........................................................TGAGCATCCTTCGACAGAGCGTTTGG..........................................................................................................................................................................................................	26	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GCACACGACATTGAAAATTCGCGGAAA......	27	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TGTGGACCAGTGCACACGACATTG....................	24	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CATTGAAAATTCGCGGAAGGC....	21	8	0.25	2	0	0	0	0	0	0	0	2	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGACA.........................................................................................................................	23	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................GCAAGCCTCGATTGCTGACGC........................................................................................................................	21	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................TGTATGCGCTGTTTTAAATGCAAGCC......................................................................................................................................	26	12	0.25	3	0	0	0	0	0	0	0	3	0	0
............................................................................................................................................TAAATGCAAGCCTCGATTGCTGACGC........................................................................................................................	26	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CACACGACATTGAAAATTCGCG..........	22	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................GCAAGCCTCGATTGCTGACG.........................................................................................................................	20	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CACACGACATTGAAAATTCGCGGAAGG.....	27	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.............................................................GCATCCTTCGACAGAGCGTTTGG..........................................................................................................................................................................................................	23	8	0.25	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................TGCCGTCAGACAGTTCGATCGTG..............................................................................................................................................................	23	8	0.25	2	0	1	0	0	0	0	1	0	0	0
.......................................................................................................TCTGCCGTCAGACAGTTCGATCGTGT.............................................................................................................................................................	26	8	0.25	2	0	2	0	0	0	0	0	0	0	0
......................................................................................AGTGAACGCTCAGGAGGTCTG...................................................................................................................................................................................	21	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TGTGGACCAGTGCACACGACATTGAAA.................	27	8	0.25	2	0	1	0	0	0	0	0	1	0	0
.......................................................................................................TCTGCCGTCAGACAGTT......................................................................................................................................................................	17	12	0.25	3	0	0	0	0	0	0	0	3	0	0
............................................................................................................................................................................................CCGCAGATCGACTCCG-TGCTCTCCG........................................................................	25	8	0.25	2	0	1	0	0	0	0	0	1	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCTGACGCAACA----................................................................................................................	29	8	0.25	2	0	1	1	0	0	0	0	0	0	0
............................................................................................................................................................................................CCGCAGATCGACTCCG-TGCTCTCC.........................................................................	24	8	0.25	2	0	2	0	0	0	0	0	0	0	0
..........................................................TGAGCATCCTTCGACAGAGCG...............................................................................................................................................................................................................	21	12	0.25	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................AAGCCTCGATTGCTGACGCAAC.....................................................................................................................	22	9	0.22	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTGATTTTTGTGGACCAGT.................................	19	9	0.22	2	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................TAAATGCAAGCCTCGATTGC..............................................................................................................................	20	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................TGTTTTAAATGCAAGCCTCGATTGC..............................................................................................................................	25	9	0.22	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTGA...........................................................................................................................	21	9	0.22	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................AAATGCAAGCCTCGATTGCT.............................................................................................................................	20	9	0.22	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................ATGCAAGCCTCGATTGCTGA...........................................................................................................................	20	9	0.22	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................AATGCAAGCCTCGATTGCTG............................................................................................................................	20	9	0.22	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................TGCGCTGTTTTAAATGCAAGCCTCGAT.................................................................................................................................	27	9	0.22	2	0	0	2	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGGCGTTGATTTTTGTGGACCAGT.................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTGCGGCGTTGATTTTTGTGGACCAG..................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
........................................................................................TGAACGCTCAGGAGGTCTGCCG................................................................................................................................................................................	22	10	0.20	2	0	2	0	0	0	0	0	0	0	0
...................................TCATGTCGGCCCACGAGCACTTGTGA.................................................................................................................................................................................................................................	26	10	0.20	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................ACCCGCAGATCGACTCCG-TG...............................................................................	20	10	0.20	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTGCGGCGTTGATTTTTGTGGACC....................................	24	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................CGGCGTTGATTTTTGTGGACC....................................	21	5	0.20	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................TCAGACAGTTCGATCGTGTATGCG........................................................................................................................................................	24	10	0.20	2	0	1	0	0	0	0	1	0	0	0
........................................................................................TGAACGCTCAGGAGGTCTGCCGT...............................................................................................................................................................................	23	10	0.20	2	0	2	0	0	0	0	0	0	0	0
........................................................................................TGAACGCTCAGGAGGTCTGCCGTC..............................................................................................................................................................................	24	10	0.20	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TACCCGCAGATCGACTCCG-.................................................................................	19	10	0.20	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................TCAGGAGGTCTGCCGTCAGACAGT.......................................................................................................................................................................	24	10	0.20	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCGGCGTTGATTTTTGTGGACCAGTGC...............................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGGCGTTGATTTTTGTGGACCAGT.................................	26	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...................................TCATGTCGGCCCACGAGCACT......................................................................................................................................................................................................................................	21	10	0.20	2	0	2	0	0	0	0	0	0	0	0
............................................................................................CGCTCAGGAGGTCTGCCGTCAG............................................................................................................................................................................	22	11	0.18	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................ACGCTCAGGAGGTCTGCCG................................................................................................................................................................................	19	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTTGCGGCGTTGATTTTTGT.........................................	20	6	0.17	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................ATTTGCGGCGTTGATTTTTGTGGA......................................	24	6	0.17	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................CAATTTGCGGCGTTGATTTTTGTG........................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CGGCGTTGATTTTTGTGG.......................................	18	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCAATTTGCGGCGTTGATTTTTGTGGAC.....................................	28	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TGCCGTCAGACAGTT......................................................................................................................................................................	15	12	0.17	2	0	0	0	0	0	0	0	2	0	0
.............................................................................................................................................................................................................................TCAATTTGCGGCGTTGATTTTTGT.........................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TGAAAATTCGCGGAAGGCCCCC	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTTGCGGCGTTGATTTTTGTGGAT.....................................	24	6	0.17	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................TCAATTTGCGGCGTTGATTTTTGTG........................................	25	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................TCAGGAGGTCTGCCGTCAGAC..........................................................................................................................................................................	21	12	0.17	2	0	1	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................CCCATTTTCAATTTGCGGCGTTGATTT.............................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAATTTGCGGCGTTGATTTTTGTGGA......................................	26	6	0.17	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................ATTTGCGGCGTTGATTTTTGTGG.......................................	23	6	0.17	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................GCGGCGTTGATTTTTGTGGAC.....................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCGGCGTTGATTTTTGTG........................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAATTTGCGGCGTTGATTTTTGT.........................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TGCGCTGTTTTAAATGCAAGC.......................................................................................................................................	21	13	0.15	2	0	0	0	0	0	0	0	2	0	0
...................................................................................................................................................................................................................................................................GACATTGAAAATTCGCGGAAGGC....	23	7	0.14	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................CCCGCAGATCGACTCCG-TGCTCTCCGC.......................................................................	27	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCGACTCCG-TGCTCTCCGCCCATTT.................................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTTCAATTTGCGGCGTTGATT..............................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GATTTTTGTGGACCAGTGCACACG..........................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CCCATTTTCAATTTGCGGCG....................................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................CGACATTGAAAATTCGCGGAAGGCA...	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CAGATCGACTCCG-TGCTCTCCGC.......................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TTTTTGTGGACCAGTGCACACGACA.......................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CACGACATTGAAAATTCGCGGAAGGC....	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCAATTTGCGGCGTTGAT...............................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ACTCCG-TGCTCTCCGCCCATTTT................................................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................TCAGGAGGTCTGCCGTCAGACAGTTC.....................................................................................................................................................................	26	7	0.14	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................TCGACTCCG-TGCTCTCCGCCC.....................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TCGACTCCG-TGCTCTCCGCCCA....................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GATCGACTCCG-TGCTCTCCGCCCATT..................................................................	26	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCAATTTGCGGCGTTGATTTTTG..........................................	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATTTGCGGCGTTGATTTTTG..........................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGAAGCTATATTCGTCATCTGCACCATTCGAATTTTCATGTCGGCCCACGAGAACTTGTGAGCATCCTTCGACAGAGCGTGTGGATAGTGAACGCTCAGGAGGTCTGCCGTCAGACAGTTCGATCATGTATGCGCTGTTTTAAATGCAAGCCTCGATTGCTGACGCAACT----CATGGGGAATTTACCCGCAGATCGACTCCG-TGCTCTCCGCCCA---------------------------------GTGCATGCAACATCGAAAATTCGCGGAAGGCCCCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................................GTGGATAGTGAACGCTCAGGAGGTC.....................................................................................................................................................................................	25	20	1.20	24	0	24	0	0	0	0
................................................................TCCTTCGACAGAGCGTGTGGATAG......................................................................................................................................................................................................	24	20	0.35	7	0	7	0	0	0	0
.....................................................................................................................................................................CAACT----CATGGGGAATTTACCCGC..............................................................................................	23	20	0.30	6	0	6	0	0	0	0
.........................................................................................GAACGCTCAGGAGGTCTGCC.................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	2	1
.......................................................................................................TCTGCCGTCAGACAGTTCGATCATGTA............................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................TGCTGACGCAACT----CATGGG..........................................................................................................	19	20	0.10	2	0	2	0	0	0	0
.....................................................................................TAGTGAACGCTCAGGAGGTCTGCCG................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
.................................TTTCATGTCGGCCCACGA...........................................................................................................................................................................................................................................	18	20	0.10	2	2	0	0	0	0	0
........TATTCGTCATCTGCACCATTCGAAT.............................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
................................................................TCCTTCGACAGAGCGTGTGG..........................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
......................................................................GACAGAGCGTGTGGATAGTGAACG................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
............................................................................GCGTGTGGATAGTGAACGCTCAGG..........................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................GCAACT----CATGGGGAATTTACCCGCAGATC.........................................................................................	29	20	0.05	1	0	1	0	0	0	0
CGAAGCTATATTCGTCATCTGCACCAT...................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
..................................................................................GGATAGTGAACGCTCAGGAGGTC.....................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................TTTACCCGCAGATCGACTCCG-TGCTC............................................................................	26	20	0.05	1	0	1	0	0	0	0
..........................................................................GAGCGTGTGGATAGTGAACGCTCAGG..........................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
....................................................................TCGACAGAGCGTGTGGATAGTGAA..................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................TGGGGAATTTACCCGCAGATCGACT.....................................................................................	25	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................GCAGATCGACTCCG-TGCTCTC..........................................................................	21	20	0.05	1	0	1	0	0	0	0
...............................................................................................TCAGGAGGTCTGCCGTCAGAC..........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.........................................................................................................TGCCGTCAGACAGTTCGATCATGT.............................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................GATCGACTCCG-TGCTCTCCGC.......................................................................	21	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................TGCTGACGCAACT----CATGGGGAATT.....................................................................................................	24	20	0.05	1	0	0	1	0	0	0
............................................................................................CGCTCAGGAGGTCTGCCGTC..............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
..............................................................................................................TCAGACAGTTCGATCATGTATGCGCT......................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................................TTCGATCATGTATGCGCTGTTT..................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................CAAGCCTCGATTGCTGACG.........................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................GACGCAACT----CATGGGGAATTTACCC................................................................................................	25	20	0.05	1	0	1	0	0	0	0
..............................................................................................................TCAGACAGTTCGATCATGTATGCGCTG.....................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.....................................................................................................GGTCTGCCGTCAGACAGTTCGATCA................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
...........................................................................AGCGTGTGGATAGTGAACGC...............................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.................................................................................TGGATAGTGAACGCTCAGGAGGTC.....................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
................................................................TCCTTCGACAGAGCGTGTG...........................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
................................................................................GTGGATAGTGAACGCTCAGGAGGT......................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................AAGCCTCGATTGCTGACGCAACT----................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..........................................................TGAGCATCCTTCGACAGAGCGTGTGGA.........................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
................................................................TCCTTCGACAGAGCGTGTGGATAGTGT...................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
................................................................................................................AGACAGTTCGATCATGTATGCGC.......................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
..............................................................................................................TCAGACAGTTCGATCATGTATGCGC.......................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.................TCTGCACCATTCGAATTTTCATGTCGG..................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
...............................................................................................TCAGGAGGTCTGCCGTCAGACA.........................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
............................................................................................................................CATGTATGCGCTGTTTTAAATGCAA.........................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.......................................................................................................TCTGCCGTCAGACAGTTCGATCATGTAT...........................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
........................................................................................................CTGCCGTCAGACAGTTCGATCATG..............................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.............................................................GCATCCTTCGACAGAGCGTGTGGT.........................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................GCAACT----CATGGGGAATTTACCCGCAT............................................................................................	26	20	0.05	1	0	1	0	0	0	0
........TATTCGTCATCTGCACCATTCGAATT............................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.........................................................................................................TGCCGTCAGACAGTTCGATCATGTATG..........................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0

droWil2

CGAAGCTATGTCCGTCATCTCCATTTATCGAATTGTCATGTTGGCCCAAGAGCTTTAGTGAGCACCCTGCGTGAACAGCTATGGGTTGTTAAAGCTTTAGAAGTCTTCCGTCAGACAGTGAGGTCTTGTGTATTATGTTTTAAATACAAGCCACCTCTTATGACGCAAATATGTAATGGGAAATTTTCCGGCAGACAGAGTTAG-AGAGCTCCGCCCATTCAGCATTTGCGGCGTAGATTTTTGTGGTACAGTACACATAACATTGAAAATTCGAGGAAGGCCTCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

ATAAGCTTTATTAGATACCCGCACTTGTAGGATTACCATTCTGGTCCAAGAGAAGTTGTGAGTCTTCTTCATTAGCGACTTTGGCTAATTAACGCTCAACAGGTCTGTCGTCAGGCAGTAAGAACATGCATCCGTT--TTTAAATGCAAACCTCATTTGCTAATTCAAAT----TATGA-AAATTAACCAGCAGGTCGACTCTG-AGCGTTTCGCCCATTTTCTATATCTGGTGTCGATTTTTGTAGACCAATTAGCACGACCTTTCGAATGCGTTCAAGGCCTAC

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

T------------------TGCATCGCTCTCATTGCCACGCCAATCCACTGGTACGAATGGGCCTGCTTCGTCAGCAGGTGTGGCTGGTCAATGCTCGAGAGGCTTGCAGTGCAGTAGTTAGAAAATGCGTACATTGTTTTCGCTACAAACCGAAACTCTTATCCCAAAT----AATGGG-------CCCGCTGACTGCTTACA-TGGTAATAGGCCATTTGAGATCAGTGGAGTGGACTTTTGTGGTCCAATACTAGTTTCGCTGGGAATTCGTGGCAAATCGCC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGTGGC........	23	14	2.93	41	18	2	0	0	20	1
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGTGG.........	22	14	2.50	35	29	1	0	0	4	1
................................................................................................................................CGTACATTGTTTTCGCTACAAACCGA....................................................................................................................................	26	8	1.50	12	11	0	0	0	1	0
......................ATCGCTCTCATTGCCACGCCAATCC...............................................................................................................................................................................................................................................	25	20	1.25	25	25	0	0	0	0	0
................................................................................................................................CGTACATTGTTTTCGCTACAAACC......................................................................................................................................	24	8	1.25	10	6	0	0	0	4	0
..............................................................................................................................................................CTTATCCCAAAT----AATGGG-------CCCG...............................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............................................CCACTGGTACGAATGGGCCTG............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................CATTGCCACGCCAATCCACTGGTACG......................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................TGGTACGAATGGGCCTGCTTCGTC.....................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................TGGTACGAATGGGCCTGCTTCGTCAGC..................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................CGTACATTGTTTTCGCTACAAACCG.....................................................................................................................................	25	8	0.88	7	7	0	0	0	0	0
................................................................................................................................CGTACATTGTTTTCGCTACAAACCGAAAC.................................................................................................................................	29	8	0.75	6	6	0	0	0	0	0
............................................................................................................................................................................................................................................................TACTAGTTTCGCTGGGAATTCGTGGC........	26	13	0.62	8	5	0	0	0	3	0
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGTGGCA.......	24	13	0.62	8	8	0	0	0	0	0
...........................TCTCATTGCCACGCCAATCCACTGG..........................................................................................................................................................................................................................................	25	8	0.50	4	3	0	0	0	1	0
................................................................................................................................CGTACATTGTTTTCGCTACAAACCGAAA..................................................................................................................................	28	8	0.50	4	2	0	0	0	2	0
......................ATCGCTCTCATTGCCACGCCAAT.................................................................................................................................................................................................................................................	23	20	0.35	7	6	0	0	0	1	0
........................................................................................................................................................................................................TACA-TGGTAATAGGCCATTTGAGATC...........................................................	26	3	0.33	1	1	0	0	0	0	0
........................................................................................................................................................................................................TACA-TGGTAATAGGCCATTTGAGATCAG.........................................................	28	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................................................................................................TTACA-TGGTAATAGGCCATTTGAGATC...........................................................	27	3	0.33	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGTGGCAA......	25	13	0.31	4	4	0	0	0	0	0
......................................................................................................................................................................................................................................................GTCCAATACTAGTTTCGCTGG...................	21	20	0.30	6	5	0	0	0	0	1
.................................................................................................................................................................................................................AATAGGCCATTTGAGATCAGT........................................................	21	20	0.25	5	0	0	0	0	0	5
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGTGGCAAA.....	26	13	0.23	3	3	0	0	0	0	0
.....................CATCGCTCTCATTGCCACGCC....................................................................................................................................................................................................................................................	21	20	0.20	4	4	0	0	0	0	0
..........................................................................................................................................................................................................................TTTGAGATCAGTGGAGTGGACT..............................................	22	20	0.20	4	4	0	0	0	0	0
................................................................................................................................................................................................................................................................AGTTTCGCTGGGAATTCGTGG.........	21	15	0.20	3	3	0	0	0	0	0
.................................................................................................................................GTACATTGTTTTCGCTACAAACC......................................................................................................................................	23	11	0.18	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................TTCGCTGGGAATTCGTGGCAAATCGCC	27	11	0.18	2	0	0	0	0	2	0
.................................................................................................................................GTACATTGTTTTCGCTACAAACCGAAAC.................................................................................................................................	28	11	0.18	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................TACTAGTTTCGCTGGGAATTCGTG..........	24	13	0.15	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGTGGCAAATC...	28	13	0.15	2	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................ACTAGTTTCGCTGGGAATTCGTGGC........	25	13	0.15	2	2	0	0	0	0	0
......................ATCGCTCTCATTGCCACGCCA...................................................................................................................................................................................................................................................	21	20	0.15	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................CAATACTAGTTTCGCTGGGAA................	21	20	0.15	3	2	0	0	0	0	1
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGTG..........	21	14	0.14	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGT...........	20	14	0.14	2	2	0	0	0	0	0
................................................................................................................................CGTACATTGTTTTCGCTACAAAC.......................................................................................................................................	23	8	0.13	1	1	0	0	0	0	0
...............................................................................................................................GCGTACATTGTTTTCGCTACAAACCG.....................................................................................................................................	26	8	0.13	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................TTTTGTGGTCCAATACTAGTTTCGC......................	25	16	0.13	2	0	1	0	0	1	0
...........................TCTCATTGCCACGCCAATCCACTG...........................................................................................................................................................................................................................................	24	8	0.13	1	1	0	0	0	0	0
......................ATCGCTCTCATTGCCACGCCAATCCAAA............................................................................................................................................................................................................................................	28	8	0.13	1	1	0	0	0	0	0
...........................TCTCATTGCCACGCCAATCCACTGGTA........................................................................................................................................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
....................................................................................CTGGTCAATGCTCGAGAGGCTTG...................................................................................................................................................................................	23	17	0.12	2	1	0	0	0	0	1
..........................................................................................................................................................................................................................TTTGAGATCAGTGGAGTGGACTT.............................................	23	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................TTTGAGATCAGTGGAGTGGAC...............................................	21	20	0.10	2	2	0	0	0	0	0
............................................................................................................................................................................................................................TGAGATCAGTGGAGTGGAC...............................................	19	20	0.10	2	2	0	0	0	0	0
........................CGCTCTCATTGCCACGCCAATC................................................................................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
........................................................AATGGGCCTGCTTCGTCAGC..................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
T------------------TGCATCGCTCTCATTGCCACG......................................................................................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
.................................................................................................................................GTACATTGTTTTCGCTACAAACCGAA...................................................................................................................................	26	11	0.09	1	1	0	0	0	0	0
................................................................TGCTTCGTCAGCAGGTGTGGC.........................................................................................................................................................................................................	21	11	0.09	1	1	0	0	0	0	0
...................................................................................................GAGGCTTGCAGTGCAGTAGTTAGAAAAA...............................................................................................................................................................	28	11	0.09	1	1	0	0	0	0	0
.........................................................................................................TGCAGTGCAGTAGTTAGAAAATG..............................................................................................................................................................	23	11	0.09	1	0	0	0	0	0	1
.................................................................................................................................GTACATTGTTTTCGCTACAAACCG.....................................................................................................................................	24	11	0.09	1	1	0	0	0	0	0
...........................TCTCATTGCCACGCCAATCCACT............................................................................................................................................................................................................................................	23	11	0.09	1	1	0	0	0	0	0
.................................................................................................................................GTACATTGTTTTCGCTACAAACCGA....................................................................................................................................	25	11	0.09	1	1	0	0	0	0	0
................................................................TGCTTCGTCAGCAGGTGTGGCTGG......................................................................................................................................................................................................	24	11	0.09	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TACTAGTTTCGCTGGGAATTCGTGGCAAA.....	29	12	0.08	1	0	0	0	0	0	1
...............................................................................................................................................CTACAAACCGAAACTCTTATCCCA.......................................................................................................................	24	12	0.08	1	1	0	0	0	0	0
.................................................................................................................................................ACAAACCGAAACTCTTATCCCAAAT----A...............................................................................................................	26	12	0.08	1	1	0	0	0	0	0
...............................................................................................................................................CTACAAACCGAAACTCTTATCCC........................................................................................................................	23	12	0.08	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TACTAGTTTCGCTGGGAATTCGTGGCAA......	28	12	0.08	1	1	0	0	0	0	0
...........................................................................................................................................TTCGCTACAAACCGAAACTCTTATCC.........................................................................................................................	26	12	0.08	1	0	0	0	0	1	0
..............................................................................................CTCGAGAGGCTTGCAGTGCAGTAGTT......................................................................................................................................................................	26	12	0.08	1	1	0	0	0	0	0
..........................................................................................................................................TTTCGCTACAAACCGAAACTCTTATCC.........................................................................................................................	27	12	0.08	1	1	0	0	0	0	0
.............................................................................................................................................CGCTACAAACCGAAACTCTTATT..........................................................................................................................	23	13	0.08	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TACTAGTTTCGCTGGGAATTCGTGG.........	25	13	0.08	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................GTGGAGTGGACTTTTGTGGTCCAATAC...............................	27	13	0.08	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................ACTAGTTTCGCTGGGAATTCGTGG.........	24	13	0.08	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGTGGCAT......	25	13	0.08	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TACTAGTTTCGCTGGGAATTCGTGGA........	26	13	0.08	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................GTGGTCCAATACTAGTTTCGCTGG...................	24	13	0.08	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGTGGCAAAT....	27	13	0.08	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................AGTTTCGCTGGGAATTCGTGGCAAAT....	26	14	0.07	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................TAGTTTCGCTGGGAATTCGTGGCAC......	25	14	0.07	1	0	0	0	0	1	0
.................................................................................TGGCTGGTCAATGCTCGAGAGGC......................................................................................................................................................................................	23	15	0.07	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................GTGGAGTGGACTTTTGTGGTCCAATC................................	26	15	0.07	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................AGTTTCGCTGGGAATTCGTGGC........	22	15	0.07	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................GTTTCGCTGGGAATTCGTGG.........	20	15	0.07	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................TTCGCTGGGAATTCGTGGC........	19	15	0.07	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................GTGGAGTGGACTTTTGTGGTC.....................................	21	17	0.06	1	1	0	0	0	0	0
.......................TCGCTCTCATTGCCACGCCA...................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.........................................................ATGGGCCTGCTTCGTCAGCAG................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................ATAGGCCATTTGAGATCAGTGT......................................................	22	20	0.05	1	0	0	0	0	0	1
......................ATCGCTCTCATTGCCACGCCAATTT...............................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
T------------------TGCATCGCTCTCATTGCCAC.......................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................CGCTCTCATTGCCACGCCAAT.................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...................TGCATCGCTCTCATTGCCACGCCAAT.................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................TCCAATACTAGTTTCGCTGGGAAC...............	24	20	0.05	1	0	0	0	0	1	0
T------------------TGCATCGCTCTCATTGCCACGCC....................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
T------------------TGCATCGCTCTCATTGCCACGCCA...................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................CAATACTAGTTTCGCTGGG..................	19	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................ATCAGTGGAGTGGACTTTTG..........................................	20	20	0.05	1	1	0	0	0	0	0
T------------------TGCATCGCTCTCATTGCCACGCCAA..................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................GCATCGCTCTCATTGCCACGCCAA..................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................TCCAATACTAGTTTCGCTGG...................	20	20	0.05	1	1	0	0	0	0	0
...........................TCTCATTGCCACGCCAATCC...............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
......................ATCGCTCTCATTGCCACGCCAA..................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...................TGCATCGCTCTCATTGCCAC.......................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................TGAGATCAGTGGAGTGGACTT.............................................	21	20	0.05	1	0	0	0	0	0	1
.......................TCGCTCTCATTGCCACGCCAATCC...............................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0

droGri2

AACTGC------------------------------CATGCTGGACCTAAAGCTTTAGTGGCACTCATTCGATTGAAATATTGGATCGTAAACGCCAGAGACTTGGCACGTCGCATCGTGCGAACCTGCATGCCGTGTGTTCGGTACAAGCCAAAATTGGAAAGGCAGCT----TATGGGATCGCTGCCAGTGGAGCGCCTTCG-ACCGGAACACCCATTCCAACGCTGTGGTATCGACTTCTGTGGGCCAATAAATACGTATGTTCGCATACGAGGAAAGAGTCC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dan_3357

scaffold_13469:295294-295444 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-8.0	-8.0	-8.0