ID:

dan_3348

 Coordinate:

scaffold_13417:5485668-5485818 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.8 -9.8 -8.9

Flybase annnotation

exon [dana_GLEANR_2508:3]; CDS [Dana\GF20172-cds]; intron [Dana\GF20172-in]

Repeatable elements

NameClassFamilyStrand
Hoana1DNAhAT-hobo+
Helitron-2_DVirRCHelitron-
mature
  1. scaffold_115:148-172 +
  2. scaffold_176:2390-2414 +
  3. scaffold_3721:1111-1135 +
  4. scaffold_7064:2692-2716 +
  5. scaffold_7070:972-996 +
  6. scaffold_9053:589-613 +
  7. scaffold_9053:1115-1139 +
  8. scaffold_9053:3812-3836 +
  9. scaffold_9053:4938-4962 +
  10. scaffold_9605:821-845 +
  11. scaffold_9687:4922-4946 +
  12. scaffold_11364:6489-6513 +
  13. scaffold_12911:271474-271498 +
  14. scaffold_13045:167942-167966 +
  15. scaffold_13164:41510-41534 +
  16. scaffold_13239:228661-228685 +
  17. scaffold_13272:352482-352506 -
  18. scaffold_13340:17891622-17891646 +
  19. scaffold_13469:164012-164036 -
  20. scaffold_13671:212-236 +
  21. scaffold_13339:2105456-2105480 -
  22. dan_3348  scaffold_13417:5485720-5485744 -
star
  1. scaffold_12905:225265-225289 -
  2. scaffold_12984:509520-509544 -
  3. scaffold_13045:416707-416731 -
  4. scaffold_13333:129627-129651 -
  5. scaffold_13337:17464813-17464837 +
  6. dan_3348  scaffold_13417:5485751-5485775 -
  7. scaffold_13417:5692902-5692926 +
  8. scaffold_13499:848776-848800 -
  9. scaffold_13499:968187-968211 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACCCTTCAGAAGAGGCCAAGGAGGAGCTTGCACGTAAATGTGGCATAACAGTAAGTTAATACAAAAAAAAATATTTATTATACCCTTGAAGAAGGTATTATAATTTTGGTCAAGAGTGTGCAACGCAGTGAGGGAGACATCTCCGACCCTATAAAGAATATATATTCTTGATCAGGATCACCTTCTGAGTCAATATAAGCATGTCCGTCTGTCTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGCTAT
*********************************************************************************************((.............(((..((((((.................))).))).)))))****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V106
head
 V105
male body		 M058
embryo
 M044
female body
 V055
head
............................................................................................................................GCAGTGAGGGAGACATCTCCGACCC...................................................................................................... 25 0 20 3.75 75 75 0 0 0 0
....................GAGGAGCTTGCACGTAAA..................................................................................................................................................................................................................... 18 0 1 3.00 3 3 0 0 0 0
.................AAGGAGGAGCTTGCACGTAAATGTGGC............................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0
.............GGCCAAGGAGGAGCTTGCACGT........................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0
..CCTTCAGAAGAGGCCAAGGA..................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0
................................................................................................................GGGGTGTGCAACGCAGTGAGGGA.................................................................................................................... 23 2 2 1.00 2 2 0 0 0 0
.........AAGAGGCCAAGGAGGAGCT............................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0
....................GAGGAGATTGCACGTAAA..................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0
.................AAGGAGGAGCTTGCACGTA....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0
............................................................................................................................GCAGTGAGGGAGACATCTCCGACCCT..................................................................................................... 26 0 11 0.91 10 10 0 0 0 0
......................................................................................................................TGCAACGCAGTGAGGGAGACA................................................................................................................ 21 0 14 0.86 12 8 4 0 0 0
........................................................................................................TTTGGTCAAGAGTGTGCAACG.............................................................................................................................. 21 0 9 0.56 5 2 2 0 0 1
.......................................................................................................................GCAACGCAGTGAGGGAGACATCTCC........................................................................................................... 25 0 11 0.55 6 6 0 0 0 0
....................................................................................................................TGTGCAACGCAGTGAGGGAGA.................................................................................................................. 21 0 14 0.36 5 3 2 0 0 0
..........................................................................................................................ACGCAGTGAGGGAGACATCTCCGACCC...................................................................................................... 27 0 20 0.35 7 7 0 0 0 0
........................................................................................................................CAACGCAGTGAGGGAGACATC.............................................................................................................. 21 0 14 0.29 4 2 1 0 0 1
............................................................................................................................GCAGTGAGGGAGACATCTCCG.......................................................................................................... 21 0 20 0.25 5 5 0 0 0 0
............................................................................................................................GCAGTGAGGGAGACGTCTCCGACCCT..................................................................................................... 26 1 16 0.25 4 4 0 0 0 0
.....................................................................................................................GTGCAACGCAGTGAGGGAGACATCTCC........................................................................................................... 27 0 9 0.22 2 2 0 0 0 0
.....................................................................................................................GTGCAACGCAGTGAGGGAGACATCTCCG.......................................................................................................... 28 0 9 0.22 2 2 0 0 0 0
......................................................................................................................TGCAACGCAGTGAGGGAGACATCTCC........................................................................................................... 26 0 10 0.20 2 2 0 0 0 0
.........................................................................................................TTGGTCAAGAGTGTGCAACGC............................................................................................................................. 21 0 10 0.20 2 1 1 0 0 0
.....................................................................................................................GTGCAACGCAGTGAGGGA.................................................................................................................... 18 0 17 0.18 3 3 0 0 0 0
......................................................................................................................TGCAGCGCAGTGAGGGAGACA................................................................................................................ 21 1 20 0.15 3 1 1 0 1 0
......................................................................................................................CGCAACGCAGTGAGGGAGACA................................................................................................................ 21 1 20 0.15 3 0 3 0 0 0
....................................................................................................................TGTGCAACGCAGTGAGGGAG................................................................................................................... 20 0 15 0.13 2 1 0 0 1 0
.................................................................................................TTATAATTTTGGTCAAGAGTGTGCAACGC............................................................................................................................. 29 0 8 0.13 1 0 0 0 1 0
...........................................................................................................................CGCAGTGAGGGAGACATCTCCGACCCT..................................................................................................... 27 0 8 0.13 1 1 0 0 0 0
....................................................................................................TAATTTTGGTCAAGAGTGTGC.................................................................................................................................. 21 0 8 0.13 1 1 0 0 0 0
....................................................................................................................TGTGCAACGCAGTGAGGGA.................................................................................................................... 19 0 16 0.13 2 1 1 0 0 0
......................................................................................................................TGCAACGCAGTGAGGGAGA.................................................................................................................. 19 0 17 0.12 2 2 0 0 0 0
............................................................................................................................GCAGTGAGGGAGACATCCCCGACCCT..................................................................................................... 26 1 17 0.12 2 2 0 0 0 0
.............................................................................................GGTATTATAATTTTGGTCAAGAGTG..................................................................................................................................... 25 0 9 0.11 1 0 0 1 0 0
..............................................................................................GTATTATAATTTTGGTCAAGAGTGT.................................................................................................................................... 25 0 9 0.11 1 0 0 1 0 0
.....................................................................................................................GTGCAACGCAGTGAGGGAGACATCTC............................................................................................................ 26 0 9 0.11 1 1 0 0 0 0
.....................................................................................................AATTTTGGTCAAGAGTGTGC.................................................................................................................................. 20 0 9 0.11 1 1 0 0 0 0
.......................................................................................................................GCAACGCAGTGAGGGAGACATCTCCGACC....................................................................................................... 29 0 9 0.11 1 1 0 0 0 0
......................................................................................................................TGCAACGCAGTGGGGGAGACA................................................................................................................ 21 1 20 0.10 2 0 1 0 1 0
............................................................................................................................GCAGTGAGGGAGACGTCTCCGACC....................................................................................................... 24 1 20 0.10 2 2 0 0 0 0
.....................................................................................................................GTGCAGCGCAGTGAGGGAGAC................................................................................................................. 21 1 20 0.10 2 2 0 0 0 0
....................................................................................................................TGTGCAACGCGGTGAGGGAGA.................................................................................................................. 21 1 20 0.10 2 1 1 0 0 0
............................................................................................................................GCAGTGAGGGAGACATCTCAGACCC...................................................................................................... 25 1 20 0.10 2 2 0 0 0 0
.........................................................................................................TTGGTCAAGAGTGTGCAACG.............................................................................................................................. 20 0 10 0.10 1 1 0 0 0 0
.......................................................................................................................GCGACGCAGTGAGGGAGACACCTCC........................................................................................................... 25 2 20 0.10 2 2 0 0 0 0
....................................................................................................................TGTGCGACGCAGTGAGGGAGA.................................................................................................................. 21 1 20 0.10 2 2 0 0 0 0
.........................................................................................................................AACGCAGTGAGGGAGACATCTCC........................................................................................................... 23 0 20 0.10 2 1 1 0 0 0
..................................................................................................................AGTGTGCAACGCAGTGAGGGAGAC................................................................................................................. 24 0 11 0.09 1 1 0 0 0 0
......................................................................................................................TGCAACGCAGTGAGGGAGACATCTC............................................................................................................ 25 0 11 0.09 1 0 0 1 0 0
..............................................................................................................CAAGAGTGTGCAACGCAGTGA........................................................................................................................ 21 0 11 0.09 1 0 1 0 0 0
.......................................................................................................................GCAACGCAGTGAGGGAGACATCTCCG.......................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
.......................................................................................................................GCAACGCAGTGAGGGAGACATCTC............................................................................................................ 24 0 12 0.08 1 1 0 0 0 0
....................................................................................................................TGTGCAACGCAGTGAGGGAGAC................................................................................................................. 22 0 12 0.08 1 1 0 0 0 0
.......................................................................................................................GCAACGCAGTGAGGGAGACATCT............................................................................................................. 23 0 13 0.08 1 1 0 0 0 0
................................................................................................ATTATAATTTTGGTCAAGA........................................................................................................................................ 19 0 13 0.08 1 0 0 1 0 0
...................................................................................................ATAATTTTGGTCAAGAGTGTGCAACGCG............................................................................................................................ 28 1 13 0.08 1 0 1 0 0 0
........................................................................................................................CAACGCAGTGAGGGAGACATCT............................................................................................................. 22 0 14 0.07 1 0 1 0 0 0
.....................................................................................................................GTGCAACGCAGTGAGGGAGA.................................................................................................................. 20 0 15 0.07 1 1 0 0 0 0
..............................................................AAAAATAAATATTTATTTTACC....................................................................................................................................................................... 22 2 15 0.07 1 0 0 1 0 0
..................................................................................................................................AGGGAGACATCTCCGACCCT..................................................................................................... 20 0 15 0.07 1 0 0 0 1 0
..................................................................................................................AGTGTGCAACGCAGTGAGGGA.................................................................................................................... 21 0 15 0.07 1 1 0 0 0 0
...................................................................................................................GTGTGCAACGCAGTGAGGGA.................................................................................................................... 20 0 16 0.06 1 1 0 0 0 0
......................................................................................................................TGCAACGCAGTGGGGGAGACATCTCC........................................................................................................... 26 1 16 0.06 1 1 0 0 0 0
........................................................................................................................CAGCGCAGTGAGGGAGACATCTCCGACCC...................................................................................................... 29 1 18 0.06 1 1 0 0 0 0
...................................................................................................ATAATTTTGGTCAAGAGTGTGCAACTCG............................................................................................................................ 28 2 20 0.05 1 0 1 0 0 0
....................................................................................................TAATTTTGGTCAGGAGTGTGC.................................................................................................................................. 21 1 20 0.05 1 1 0 0 0 0
......................................................................................................................TGCAACGCAGTGAGGGAGACATCTAC........................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
............................................................................................................................GCAGTGAGGGAGACATCTCCGACAC...................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
............................................................................................................................GCAGTGAGGGAGTCATCTCCGACCC...................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
........................................................................................................TTTGGTCAGGAGTGTGCAACG.............................................................................................................................. 21 1 20 0.05 1 0 0 0 0 1
............................................................................................................................GCAGTGAGGGAGACATCTCCGACC....................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................GGGCAACGCAGTGAGGGAGAC................................................................................................................. 21 1 20 0.05 1 0 0 1 0 0
..........................................................................................................................ACGCAGTGAGGGAGACATCTCCGACC....................................................................................................... 26 0 20 0.05 1 0 0 1 0 0
........................................................................................................................CAACGCAGTGAGGGAGACATCC............................................................................................................. 22 1 20 0.05 1 0 0 1 0 0
........................................................................................................TTTGGGCAAGAGTGTGCAACG.............................................................................................................................. 21 1 20 0.05 1 0 0 0 0 1
......................................................................................................................TGCGGCGCAGTGAGGGAGACAT............................................................................................................... 22 2 20 0.05 1 0 1 0 0 0
.....................................................................................................................GTGCAACGCGGTGAGGGAGA.................................................................................................................. 20 1 20 0.05 1 1 0 0 0 0
......................................................................................................................TGCAGCGCAGTGGGGGAGACA................................................................................................................ 21 2 20 0.05 1 1 0 0 0 0
..........................................................................................................................ACGCAGTGAGGGAGACATCTC............................................................................................................ 21 0 20 0.05 1 0 0 0 0 1
.........................................................................................................................AGCGCAGTGAGGGAGACATCT............................................................................................................. 21 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................GCAACGCAGTGAGGGAGACATCTCCGT......................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
...................................................................................................................GTGTTCAACGCAGTGAGGGAGAC................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................CGCAGTGAGGGAGACATCTC............................................................................................................ 20 0 20 0.05 1 1 0 0 0 0
............................................................................................................................GCGGTGAGGGAGACATCTCCGACCCT..................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
........................................................................................................................TCACGCAGTGAGGGAGACATCTCCGACCC...................................................................................................... 29 2 20 0.05 1 1 0 0 0 0
.........................................................................................................TTGGTCAGGAGTGTGCAACGC............................................................................................................................. 21 1 20 0.05 1 0 0 0 1 0
......................................................................................................................TGCAACGCAGTGAGGTAGACA................................................................................................................ 21 1 20 0.05 1 0 1 0 0 0
.....................................................................................................................GTGCAACGCGGTGAGGGAGAGATCTCC........................................................................................................... 27 2 20 0.05 1 1 0 0 0 0
.........................................................................................................TTGGTCAAGGGTGTGCAACGCA............................................................................................................................ 22 1 20 0.05 1 1 0 0 0 0
........................................................................................................................CGGCGCAGTGAGGGAGACA................................................................................................................ 19 2 20 0.05 1 1 0 0 0 0
...........................................................................................................................CGCAGTTAGGGAGACATCTCC........................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
......................................................................................................................TGCGACGCAGTGAGGGAGACA................................................................................................................ 21 1 20 0.05 1 0 0 0 1 0
......................................................................................................................TGCGGCGCAGTGAGGGAGACA................................................................................................................ 21 2 20 0.05 1 1 0 0 0 0
...........................................................................................................................CGCAGTGAGGGGGACATCTCC........................................................................................................... 21 1 20 0.05 1 0 1 0 0 0
...................................................................................................ATAATTTTGGTCAGGAGTGTGC.................................................................................................................................. 22 1 20 0.05 1 1 0 0 0 0
......................................................................................................ATTTTGGTCAAGAGTGTGCAT................................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................GTGCAGCGCAGTGGGGGAGAC................................................................................................................. 21 2 20 0.05 1 1 0 0 0 0
...........................................................................................................................CGCAGTGAGGGAGACATCT............................................................................................................. 19 0 20 0.05 1 0 1 0 0 0
...................................................................................................................GTGTGCAACGCAGTGGGGGAGA.................................................................................................................. 22 1 20 0.05 1 0 1 0 0 0
...................................................................................................................GTGTGCAGCGCAGTGAGGGAGACA................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TGGGAAGTCTTCTCCGGTTCCTCCTCGAACGTGCATTTACACCGTATTGTCATTCAATTATGTTTTTTTTTATAAATAATATGGGAACTTCTTCCATAATATTAAAACCAGTTCTCACACGTTGCGTCACTCCCTCTGTAGAGGCTGGGATATTTCTTATATATAAGAACTAGTCCTAGTGGAAGACTCAGTTATATTCGTACAGGCAGACAGACAAAGATGCGTTTGATCAGAGAGTCAAAATTTCGATA
******************************************************************************************************((.............(((..((((((.................))).))).)))))********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V106
head
 V105
male body
......................................................................................................................................................................................................................CAAAGATGCGTTTGATCAGAGAGTCAA.......... 27 0 20 2.20 44 44 0 0 0 0
........................................................................................................................................................................................................................AAGATGCGTTTGATCAGAGAGTCAA.......... 25 0 20 1.10 22 22 0 0 0 0
....................................................................................................................................................................................................TTCGTACAGGCAGACAGACAA.................................. 21 0 20 0.20 4 0 0 0 4 0
.............CCGCGTCCTCCTCGAACGAG.......................................................................................................................................................................................................................... 20 3 20 0.10 2 0 0 0 2 0
................................................................................................................................ACTCCCTCTGTAGAGGCTGGGAT.................................................................................................... 23 0 11 0.09 1 0 0 1 0 0
.................................................................................................................................CTCCCTCTGTAGAGGCTGGGATAT.................................................................................................. 24 0 11 0.09 1 0 0 1 0 0
....................................................................................................................ACACGTTGCGTCACTCCCTCT.................................................................................................................. 21 0 14 0.07 1 1 0 0 0 0
...................................................................................................................................CCCTCTGTAGAGGCTGGGATATT................................................................................................. 23 0 15 0.07 1 0 1 0 0 0
..................................................................................................................TCACACGTTGCGTCACTCCCT.................................................................................................................... 21 0 15 0.07 1 0 1 0 0 0
.......................................................................................................................CGTTGCGTCACTCCCTCTGTA............................................................................................................... 21 0 15 0.07 1 1 0 0 0 0
............................................................................................................................................GAGGCTGGGATATTTCTTAT........................................................................................... 20 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................CTGTAGAGGCTGGGATATTTCTTAT........................................................................................... 25 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................CTCCCTCTGTAGAGCCTGGGATAT.................................................................................................. 24 1 20 0.05 1 0 0 1 0 0
........................................................................................................................................TGTAGAGGCTGGGATATTTCTTATAT......................................................................................... 26 0 20 0.05 1 0 0 1 0 0
.................................................................................AGGGAAATTCTTCCATCAT....................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
....................................................................................................................................CCTCTGTAGAGGCTGGGATATTTCTT............................................................................................. 26 0 20 0.05 1 0 1 0 0 0
...............................................................................................................................................................................................................................GTTTGATCAGAGAGTCAAAAT....... 21 0 20 0.05 1 0 0 0 0 1
....................................................................................................................................CCTCTGTAGAGGCTGGGATATTTCTTAT........................................................................................... 28 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................AGAGGCTGGGATATTTCTTATATAT....................................................................................... 25 0 20 0.05 1 0 0 0 0 1
.........................................................................................................................TTGCGTCACTCCCTCTGTAGA............................................................................................................. 21 0 20 0.05 1 0 0 0 0 1
................................................................................AAGGTAAATTCTTCCATAATA...................................................................................................................................................... 21 3 20 0.05 1 0 0 1 0 0
.....................................................................................................................................................................AGAACTAGTCCTAGTGGAAGACT............................................................... 23 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................CCCTCTGTAGAGGCTGGGAAATT................................................................................................. 23 1 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13417:5485618-5485868 - dan_3348 ACCC-TTCAGAAGAGGC-------------------------CAAGGAGGAGCTTGCACGT--------AAATG-TGGCA---------TAA---------------------CAGTAAGTT-----AATACAA-------------------------------------------------------------------------AAAAAAAT----------ATTTATTATACCC--------------------TTGAAGA------AGGTATT--ATAATTT-TGG--T-----CA-AGAGTGTGCAACGCAGTGAGGGAGACATCTCCGAC-CCTATAAAGAATATATA------------TTCTTGATCAGGATCACCTTCTGAGTCAATATAAGCATGTCCGTCTGTC--------TG----------------TTTCTACGCAAACTAGTCTCTCAGTT------------------------TTAAAGCTAT
droBip1 scf7180000394976:5142-5390 + GGTGA-AG------GAGG---AGATC----------------CAGAGAAGC-AGCA--------GCAAAATCAT-TCATA---------TAT---------------------ATA----------------------------------------------------TA-----------------------------------------------------CATATATTTATACCC--------------------TTGCAGA------GGGTATT--ATAATTT-TGG--T-----CA-AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGAC-CCTATAAAGTGTATATA------------TTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTC--------CGTCTGTCTGTCTGTCCGTTTCTACGCGAACTAGTCTCTCAGTT------------------------TTAAAGCTAT
droKik1 scf7180000302571:4640-4868 + AGCT--------------------------------------------------TATACCT--------CAAAG-TAG-A---------TAA---------------------AAATAGGTT-----G-----A--------A---A--------------------------------------------------------------AACGACGAAGTTATAATGTTTTTATACTC--------------------TTGCA--------GGGTATT--ATAATTT-CAG--T-----CA-GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGAC-CCTATAAAATATATATA------------TTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTC--------CG----------------TTTCTACGCAAACTAGTCCCTCAGTT------------------------TTGAAGCTAT
droFic1 scf7180000451604:14841-15094 + AGAT--------GAAGT-----------------C-------CACC-AGGTGGTTCTACCT--------TTATGGTGGTA---------TAT---------------------ATTTAAGTT-----A-----A--------A---A----------------------ACT-----------------------------------------------TTG--CCCTTTTTATACCC--------------------TTGCAGAGCAA-AGGGTATT--ATAATTT-CAG--T-----CA-GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGAC-CCTATAAAGTATATATA------------TTCTTGATCAGCATCACGATCTGAATCGAAATCCGTGTGTACGTCTGTCCGTCTGTCTG----------------TTTCTATGTAAACTAGTCTCTCAGTT------------------------TTGAAGCTAT
droEle1 scf7180000490399:140059-140321 - ACCC-TCTGCAAGGGTA---------------------------------TAAATA-TT---A-----------------C-----------------------------------------------------------------------------------------CATGTATACCGCATTTGGAATATAGCAATAAGTACTAGAAAAGAT----------ATTTTTTATACCC--------------------TTGCAGA------GGGTATT--ATAATTTTCAG--T-----CA-GAAGTTTGCAACGCAGTGAAGGAGACATCTCCGAC-CCTATAAAGTATATATA------------TTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTC--------CGTCTG----TCCGTCCGTTTATATGCAAACTAGTCTCTCAGTT------------------------TTAAAGCTAT
droRho1 scf7180000777699:22897-23158 - TCAA-AT-----CAGTC-------------------------CACCGAGTTTCATT-TG---CA------C---------TGAGTGTCATAAAA------------------GCAGT----TGGAG--CCCCTAATTGTCTA----------------------------------------------ATCATAGC-----------GAAAAG-----------GTCTTTTTATACCC--------------------TTGCAGA------GGGTATT--ATAATTT-TGG--T-----CA-AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGAC-CCTATAAAGTATATATA------------TTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTC--------TG----------------TTTCTACGCAAACTAGTCTCTCAGTT------------------------TTAAAGCTAT
droBia1 scf7180000301495:996132-996378 - AATG-CTCTCAAGACGCT---A--------AAATCAAAAAGC-------------------GAT------------------------------CCATACAAACCCACAACC--AACGGCTT-----ACCCCAA-------------------------------------------------------------------------AAA----------------CAAGTTATACCC--------------------TTGCAGA------GGAG------GAACTT-CAG--T-----CA-GAAGTTTGCAACGCAGTGAAGGAGACCTTTCCGAC-CCCATAAAGTTTATATA------------TTATTGATCAGCGTCACTGGACGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----CG----------------TTTCTACGCAAACTAGTCTCTCAGTT------------------------TTAAAGCTAT
droTak1 scf7180000415805:114847-115078 + AATG-CGG------GGCT---TGAATCATAAATCATACTTCA-------------------AA--------------------------------------------------------TTT-----GACACAC-------------------------------------------------------------------------AAAAAAG---------TAACTTTTTATACCC--------------------TTGTAGA------GGGTATT--ATAATTT-CAG--T-----CA-GATGTTTGAAACGCAGTGAAGGAGACGTTTCCGAC-CACATAAAGTATATATA------------TTCTTGATCAGGACCAATAGCCGAGTCTATCTAGCCATGTCCGTCTGTC--------CG----------------TTTCTATGCGAACTAGTCTCTCAGTT------------------------TTAAAGCTAT
droEug1 scf7180000406000:23709-23963 - AGCA-CTTCGAATAGGC-------------------------C-----AGTGCTTG-----GAT-----------------CTGCATGACGGCTGCATGACGGCA---------------TT-----GGTACG-----------------------------------------------------------------------------------AATGAATAATATTTTTATACCG-TTAC-------TCGTA--G------ACTAAAAGGGTATA--CTAGATT-CGT--T-----GA-AAAGTATGTAACAGATAGAAGGAAGCATTTCCGAC--CTATAAAGTATATATA------------TTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATCTCCGTCTGTC--------CG----------------TCCGACCGCCCGTTCGTCCGTCCGTA------------------------TGAACGCT--
dm3 chr2R:423499-423756 - ACTC-TTCGAAAGACTT---AC---------------------AGGAAA-GACACA--------GACCAATAAA-TGATA---------TAA---------------------ATCTTAAGT-----TATCGAT-------------------------------------------------------------------------AAA-------------AAAACATGTAAAGCT------------CCGTA--GTGGAAG------AGGGTATA--CTAGATT-CGT--T-----GG-AACGAATGTAACATCCAGAAGGAAGCGTGTCCGAC-CATATAAAGTATATATA------------TTCCTTATCCCGATCAATACCCAAGTCGATTTGGCCCTGTCCATCCGTC--------CG----------------TCAGTAAGAACGTCGGTATCTCAG--------------------GAAATATGAAAAGTAG
droSim2 4:850501-850697 - AGCT-TTCA-----CGC-TTTCGAATAACATAATTTAATTAC-------------------GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAATTATACCT--------------------TTATAGA------GGGCTT----------------G-----TA-AAAATGTACAACTCAGTAAG---------CTATAC-CATATAAAGTTTTTATA------------TTCTTTATCAGTATCAACAGCCGAGTCGATAGAGACCTGTCAGTCCGTT--------CG----------------TTTCTACGGAAACTAGACTGTCAGTT------------------------TCAAAGCTAT
droSec2 scaffold_40:112147-112344 - AGCT-TTCA-----CGC-TTTCGAATAACATAATTTAATTAC-------------------GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAATTATACCT--------------------TTATAGA------CGGCTT----------------G-----TA-AAAATGTACAACTCAGTAAG---------CTATAC-CATATAAAGTTTTTATATA-----------TTTTTATCAGTATCAACAGCCGAGTCGATAGAGCCCTGTCAGTCCGTT--------CG----------------TTTCTACGGAAACTAGACTGTCAGTT------------------------TCAAAGCTAT
droYak3 3R:611035-611288 - CCTAA-AG--AAGAAGC-------------------------CATTGCC-AGCTTACCCTT--------AATTT-TAGA-----------AA--------------------------AATT-----ACCCCAA-------------------------------------------------------------------------AAAATGAT----------CATAATTATACCCGTTTC-------TCGTA--G------AGTAAAAGGGTATA--CTAGATT-CGT--T-----GA-AAAGTGTGTAACAGGCAGAAGGAAGCGTTTCCGAC-CATATAAAGTGT--ATA------------TTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCATCTGTC--------TG----------------TGCTTATCAAGGTCGAGATCTCAG--------------------GAACTATAAAAACTAG
droEre2 scaffold_4770:2252486-2252718 + GAGG-CTG----AGAGC-------------------------TAATGAGGTGTA-C-GA-----GT-ATATTAA-TG---------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATTATACGT--TGC-------TTGTA--A------AATAAGAGGGTATA--CTAGATT-AGTTG-AATGTTG-AAAGTATGTTGAATGCAGAAGGAAGCGTTTTCGAC-CATCTAAAGTATTTATA------------TTCTTGATCAGGATCACTAGCCAAGTTGATCTGATCATGTCCGTCTGTC--------CG----------------TATAAACGC----CTCGATCTCAG--------------------GAACTATAAAAGCTAG
dp5 XR_group8:3533990-3534254 - TCCAG-AG----GGGAC-------------------------CAGGGAAGTGGATG-TG---A-----------------CAAGTGCGACAATTGTAAGAAAACCCAGAAGC--------------------------------------------------------------------------------------------------------AATGAGCCCTATTTTTATACCCGATAC-------TCAAAATG------AGTATAGAGGTATA--TTAGATT-TGTGGTGAACTTG-GATGTGTGTAACGTCGAGAAGGAAGCGTTTCCGAC-CCCATAAAATATATACATATG----TATATTCATGATCAGCATCAATAGCCGAGTCGATTGAGCAATGCCTGTCTGTC--------CG----------------TCCCTATGAGAGCCTAGTGCTCAG------------------------------------
droPer2 scaffold_65:336462-336737 - TCCAG-AG----GGGAC-------------------------CAGGGAAGTGGATG-TG---A-----------------CAAGTGCGACAATTGTAAGAAAACCCAGAAGC--------------------------------------------------------------------------------------------------------AAAGAGCCCTATTTTTATACCCGATAC-------TCAAAATG------AGTATAGAGGTATA--TTAGATT-TGTGGTGAAATTG-GATGTGTGTAACGTCGAGAGGGAAGCGTTTCCGAC-CCCATAAAGTATATACATATGTATGTATATTCATGATCAGCATCAATAGCCGAGTCGATTGAGCAATGCCTGTCTGTC--------CG----------------CCCCTATGAGCGCCTAGTGCTCAG-----------------------------AGGCTAT
droWil2 scf2_1100000004961:1589538-1589790 - GATG-ATA--------C-------------------------AGAAAAAGAGTTTG-GA---A-----------------CATGTAAA--AATA------------------TTA------T-----G-----G--------CCAAGGACTGCAAGGTTATGTATATAAACA-----------------------------------------------------TCGGCACATACCC--------------------TTGTAAA-----AGGGTATA--TTAATTT-TGG--T-----CA-GAAGTGTGCAACGCATAGAAGGAAGCATTTCCGAC-CATATAAAGTATATATA------------TTCTTGATCAGCATGACGAGACGAGTTTATATAGCCATGTCCGTCCGTC--------TG----------------GATCAACGCAAACTCCTCCTAGATCG------------------------TAAGAGCTAC
droVir3 scaffold_13050:2715587-2715835 - CTTT---CATGAGAGTT-------------------------TAATGCGGGGGTTC-CG-----GC---ATATA-TGAA-----------AATA------------------GCAGC----TGGTGTACTACCA-------------------------------------------------------------------------G-----------TTGTATTATTTTTATACCC--------------------TTGCAGA------GGATATTTTTTTATTT-TGT--------CATGAAGTGTGTAACGCATAGAAGGAGACATCTCCGAC-CCCATAAAGTAT--ATA------------TTCTTGATCAGCATCAACAGCCGAGTCGATATAGCCATTTCCGTCTGTC--------TA----------------TTTCTATGCGAACTAGTCTCTCAGAT------------------------TTAAAGCTAT
droMoj3 scaffold_6500:29753245-29753511 + CACAA-AA------GAC-------------------------AAAAAAGGTGCG-C-AC-----GC---ACGCA-TGACC---------AGG---------------------CATGGTCTT-----ACTACGA-------------------------------------------------------------------------G----------------ATATTATTATACCCTGAACCCATTTTCAATG--G------GAAATCAGGGTATA--ATGGTTT-TGT--T-----GA-AAAGTATGTAACAGGCAGAAGGAGGCGTGGCAGAC-CCCACAAAGTATATATA------------TTCTTGATTAGGGTGACTAGCTTAGTCGATTTGGCCCTGTCCGTCTGTC--------TG----------------TCTGTCCGTATGT------------ATGAACGCGTCGATCTCAGAAGATCTAAGAGCTAG
droGri2 scaffold_15252:14913190-14913392 + AAAT-TTGT-----ACA-ACTGAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTAATATCC--------------------TTGCAGA------TTGTATT--ATAATTT-TGA--T-----TGCACAGCATTTTAGGCATTAAAGGGGACGTCTCCTAAACTCAAAAAGTATATATG------------TTCTTGGTCAACATCACTATTCGAGTAGATATAGCCATTTTCATCCGTCTATC----TG----------------CTTCTAAGCGAGCTAATGCCTAAGTT------------------------TTGAAGATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
ACCC-TTCAGAAGAGGC-------------------------CAAGGAGGAGCTTGCACGT--------AAATG-TGGCA---------TAA---------------------CAGTAAGTT-----AATACAA-------------------------------------------------------------------------AAAAAAAT----------ATTTATTATACCC--------------------TTGAAGA------AGGTATT--ATAATTT-TGG--T-----CA-AGAGTGTGCAACGCAGTGAGGGAGACATCTCCGAC-CCTATAAAGAATATATA------------TTCTTGATCAGGATCACCTTCTGAGTCAATATAAGCATGTCCGTCTGTC--------TG----------------TTTCTACGCAAACTAGTCTCTCAGTT------------------------TTAAAGCTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................GCAGTGAGGGAGACATCTCCGAC-CC..................................................................................................................................................................25203.75750000075
..............................................GAGGAGCTTGCACGT--------AAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003000003
...........................................AAGGAGGAGCTTGCACGT--------AAATG-TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..............GGC-------------------------CAAGGAGGAGCTTGCACGT--------.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..CC-TTCAGAAGAGGC-------------------------CAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........AAGAGGC-------------------------CAAGGAGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................AAGGAGGAGCTTGCACGT--------A................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..........................................................................................................................................................................................................................................................................................................................GCAGTGAGGGAGACATCTCCGAC-CCT.................................................................................................................................................................26110.91100000010
....................................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAGGGAGACA.............................................................................................................................................................................21140.8612000048
.............................................................................................................................................................................................................................................................................................TT-TGG--T-----CA-AGAGTGTGCAACG...........................................................................................................................................................................................2190.565000122
.....................................................................................................................................................................................................................................................................................................................GCAACGCAGTGAGGGAGACATCTCC........................................................................................................................................................................25110.556000006
..................................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAGGGAGA...............................................................................................................................................................................21140.365000023
........................................................................................................................................................................................................................................................................................................................ACGCAGTGAGGGAGACATCTCCGAC-CC..................................................................................................................................................................27200.357000007
......................................................................................................................................................................................................................................................................................................................CAACGCAGTGAGGGAGACATC...........................................................................................................................................................................21140.294000112
..........................................................................................................................................................................................................................................................................................................................GCAGTGAGGGAGACATCTCCG.......................................................................................................................................................................21200.255000005
...................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAGGGAGACATCTCC........................................................................................................................................................................2790.222000002
...................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAGGGAGACATCTCCG.......................................................................................................................................................................2890.222000002
....................................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAGGGAGACATCTCC........................................................................................................................................................................26100.202000002
..............................................................................................................................................................................................................................................................................................T-TGG--T-----CA-AGAGTGTGCAACGC..........................................................................................................................................................................................21100.202000011
...................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAGGGA.................................................................................................................................................................................18170.183000003
..................................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAGGGAG................................................................................................................................................................................20150.132100001
....................................................................................................................................................................................................................................................................................TT--ATAATTT-TGG--T-----CA-AGAGTGTGCAACGC..........................................................................................................................................................................................2980.131100000
.........................................................................................................................................................................................................................................................................................................................CGCAGTGAGGGAGACATCTCCGAC-CCT.................................................................................................................................................................2780.131000001
.........................................................................................................................................................................................................................................................................................TAATTT-TGG--T-----CA-AGAGTGTGC...............................................................................................................................................................................................2180.131000001
..................................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAGGGA.................................................................................................................................................................................19160.132000011
....................................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAGGGAGA...............................................................................................................................................................................19170.122000002
................................................................................................................................................................................................................................................................................GGTATT--ATAATTT-TGG--T-----CA-AGAGTG..................................................................................................................................................................................................2590.111010000
.................................................................................................................................................................................................................................................................................GTATT--ATAATTT-TGG--T-----CA-AGAGTGT.................................................................................................................................................................................................2590.111010000
...................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAGGGAGACATCTC.........................................................................................................................................................................2690.111000001
..........................................................................................................................................................................................................................................................................................AATTT-TGG--T-----CA-AGAGTGTGC...............................................................................................................................................................................................2090.111000001
.....................................................................................................................................................................................................................................................................................................................GCAACGCAGTGAGGGAGACATCTCCGAC-C...................................................................................................................................................................2990.111000001
..............................................................................................................................................................................................................................................................................................T-TGG--T-----CA-AGAGTGTGCAACG...........................................................................................................................................................................................20100.101000001
.......................................................................................................................................................................................................................................................................................................................AACGCAGTGAGGGAGACATCTCC........................................................................................................................................................................23200.102000011
................................................................................................................................................................................................................................................................................................................AGTGTGCAACGCAGTGAGGGAGAC..............................................................................................................................................................................24110.091000001
....................................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAGGGAGACATCTC.........................................................................................................................................................................25110.091010000
...........................................................................................................................................................................................................................................................................................................CA-AGAGTGTGCAACGCAGTGA.....................................................................................................................................................................................21110.091000010
.....................................................................................................................................................................................................................................................................................................................GCAACGCAGTGAGGGAGACATCTCCG.......................................................................................................................................................................26110.091000001
.....................................................................................................................................................................................................................................................................................................................GCAACGCAGTGAGGGAGACATCTC.........................................................................................................................................................................24120.081000001
..................................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAGGGAGAC..............................................................................................................................................................................22120.081000001
.....................................................................................................................................................................................................................................................................................................................GCAACGCAGTGAGGGAGACATCT..........................................................................................................................................................................23130.081000001
...................................................................................................................................................................................................................................................................................ATT--ATAATTT-TGG--T-----CA-AGA.....................................................................................................................................................................................................19130.081010000
........................................................................................................................................................................................................................................................................................ATAATTT-TGG--T-----CA-AGAGTGTGCAACGCG.........................................................................................................................................................................................28130.081000010
......................................................................................................................................................................................................................................................................................................................CAACGCAGTGAGGGAGACATCT..........................................................................................................................................................................22140.071000010
...................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAGGGAGA...............................................................................................................................................................................20150.071000001
................................................................................................................................................................................................................................................................................................................................AGGGAGACATCTCCGAC-CCT.................................................................................................................................................................20150.071100000
................................................................................................................................................................................................................................................................................................................AGTGTGCAACGCAGTGAGGGA.................................................................................................................................................................................21150.071000001
.................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAGGGA.................................................................................................................................................................................20160.061000001
..........................................................................................................................................................................................................................................................................................................................GCAGTGAGGGAGACATCTCCGAC-C...................................................................................................................................................................24200.051000001
........................................................................................................................................................................................................................................................................................................................ACGCAGTGAGGGAGACATCTCCGAC-C...................................................................................................................................................................26200.051010000
......................................................................................................................................................................................................................................................................................................................CAACGCAGTGAGGGAGACATCC..........................................................................................................................................................................22200.051010000
........................................................................................................................................................................................................................................................................................................................ACGCAGTGAGGGAGACATCTC.........................................................................................................................................................................21200.051000100
.....................................................................................................................................................................................................................................................................................................................GCAACGCAGTGAGGGAGACATCTCCGT......................................................................................................................................................................27200.051000001
.........................................................................................................................................................................................................................................................................................................................CGCAGTGAGGGAGACATCTC.........................................................................................................................................................................20200.051000001
...........................................................................................................................................................................................................................................................................................ATTT-TGG--T-----CA-AGAGTGTGCAT.............................................................................................................................................................................................21200.051000001
.........................................................................................................................................................................................................................................................................................................................CGCAGTGAGGGAGACATCT..........................................................................................................................................................................19200.051000010
droBip1
GGTGA-AG------GAGG---AGATC----------------CAGAGAAGC-AGCA--------GCAAAATCAT-TCATA---------TAT---------------------ATA----------------------------------------------------TA-----------------------------------------------------CATATATTTATACCC--------------------TTGCAGA------GGGTATT--ATAATTT-TGG--T-----CA-AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGAC-CCTATAAAGTGTATATA------------TTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTC--------CGTCTGTCTGTCTGTCCGTTTCTACGCGAACTAGTCTCTCAGTT------------------------TTAAAGCTATSizeHit CountTotal NormTotal
No Reads
droKik1
AGCT--------------------------------------------------TATACCT--------CAAAG-TAG-A---------TAA---------------------AAATAGGTT-----G-----A--------A---A--------------------------------------------------------------AACGACGAAGTTATAATGTTTTTATACTC--------------------TTGCA--------GGGTATT--ATAATTT-CAG--T-----CA-GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGAC-CCTATAAAATATATATA------------TTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTC--------CG----------------TTTCTACGCAAACTAGTCCCTCAGTT------------------------TTGAAGCTATSizeHit CountTotal NormTotal
No Reads
droFic1
AGAT--------GAAGT-----------------C-------CACC-AGGTGGTTCTACCT--------TTATGGTGGTA---------TAT---------------------ATTTAAGTT-----A-----A--------A---A----------------------ACT-----------------------------------------------TTG--CCCTTTTTATACCC--------------------TTGCAGAGCAA-AGGGTATT--ATAATTT-CAG--T-----CA-GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGAC-CCTATAAAGTATATATA------------TTCTTGATCAGCATCACGATCTGAATCGAAATCCGTGTGTACGTCTGTCCGTCTGTCTG----------------TTTCTATGTAAACTAGTCTCTCAGTT------------------------TTGAAGCTATSizeHit CountTotal NormTotal
No Reads
droEle1
ACCC-TCTGCAAGGGTA---------------------------------TAAATA-TT---A-----------------C-----------------------------------------------------------------------------------------CATGTATACCGCATTTGGAATATAGCAATAAGTACTAGAAAAGAT----------ATTTTTTATACCC--------------------TTGCAGA------GGGTATT--ATAATTTTCAG--T-----CA-GAAGTTTGCAACGCAGTGAAGGAGACATCTCCGAC-CCTATAAAGTATATATA------------TTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTC--------CGTCTG----TCCGTCCGTTTATATGCAAACTAGTCTCTCAGTT------------------------TTAAAGCTATSizeHit CountTotal NormTotal
No Reads
droRho1
TCAA-AT-----CAGTC-------------------------CACCGAGTTTCATT-TG---CA------C---------TGAGTGTCATAAAA------------------GCAGT----TGGAG--CCCCTAATTGTCTA----------------------------------------------ATCATAGC-----------GAAAAG-----------GTCTTTTTATACCC--------------------TTGCAGA------GGGTATT--ATAATTT-TGG--T-----CA-AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGAC-CCTATAAAGTATATATA------------TTCTTGATCAGGATCACCTCCTGAGTTGATATAGCCATGTCCGTCTGTC--------TG----------------TTTCTACGCAAACTAGTCTCTCAGTT------------------------TTAAAGCTATSizeHit CountTotal NormTotal
No Reads
droBia1
AATG-CTCTCAAGACGCT---A--------AAATCAAAAAGC-------------------GAT------------------------------CCATACAAACCCACAACC--AACGGCTT-----ACCCCAA-------------------------------------------------------------------------AAA----------------CAAGTTATACCC--------------------TTGCAGA------GGAG------GAACTT-CAG--T-----CA-GAAGTTTGCAACGCAGTGAAGGAGACCTTTCCGAC-CCCATAAAGTTTATATA------------TTATTGATCAGCGTCACTGGACGAGTCGATCTAGCCATGTCCGTCTGTCCGTC----CG----------------TTTCTACGCAAACTAGTCTCTCAGTT------------------------TTAAAGCTATSizeHit CountTotal NormTotal
No Reads
droTak1
AATG-CGG------GGCT---TGAATCATAAATCATACTTCA-------------------AA--------------------------------------------------------TTT-----GACACAC-------------------------------------------------------------------------AAAAAAG---------TAACTTTTTATACCC--------------------TTGTAGA------GGGTATT--ATAATTT-CAG--T-----CA-GATGTTTGAAACGCAGTGAAGGAGACGTTTCCGAC-CACATAAAGTATATATA------------TTCTTGATCAGGACCAATAGCCGAGTCTATCTAGCCATGTCCGTCTGTC--------CG----------------TTTCTATGCGAACTAGTCTCTCAGTT------------------------TTAAAGCTATSizeHit CountTotal NormTotal
No Reads
droEug1
AGCA-CTTCGAATAGGC-------------------------C-----AGTGCTTG-----GAT-----------------CTGCATGACGGCTGCATGACGGCA---------------TT-----GGTACG-----------------------------------------------------------------------------------AATGAATAATATTTTTATACCG-TTAC-------TCGTA--G------ACTAAAAGGGTATA--CTAGATT-CGT--T-----GA-AAAGTATGTAACAGATAGAAGGAAGCATTTCCGAC--CTATAAAGTATATATA------------TTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATCTCCGTCTGTC--------CG----------------TCCGACCGCCCGTTCGTCCGTCCGTA------------------------TGAACGCT--SizeHit CountTotal NormTotal
No Reads
dm3
ACTC-TTCGAAAGACTT---AC---------------------AGGAAA-GACACA--------GACCAATAAA-TGATA---------TAA---------------------ATCTTAAGT-----TATCGAT-------------------------------------------------------------------------AAA-------------AAAACATGTAAAGCT------------CCGTA--GTGGAAG------AGGGTATA--CTAGATT-CGT--T-----GG-AACGAATGTAACATCCAGAAGGAAGCGTGTCCGAC-CATATAAAGTATATATA------------TTCCTTATCCCGATCAATACCCAAGTCGATTTGGCCCTGTCCATCCGTC--------CG----------------TCAGTAAGAACGTCGGTATCTCAG--------------------GAAATATGAAAAGTAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAACGTCGGTATCTCAG--------------------GAAATA..........26146.004600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000074781103000100000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000
..............................................................................................................................................................................................................................................................................................T-CGT--T-----GG-AACGAATGTAACATCCAGA.....................................................................................................................................................................................2619.0090000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................GTATA--CTAGATT-CGT--T-----GG-AAC.....................................................................................................................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TATCCCGATCAATACCCAAGTCGAT.........................................................................................................2519.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050300000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCCTGTCCATCCGTC--------CG----------------TCAG........................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000150000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACGTCGGTATCTCAG--------------------GAAATA..........2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000310300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
AGCT-TTCA-----CGC-TTTCGAATAACATAATTTAATTAC-------------------GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAATTATACCT--------------------TTATAGA------GGGCTT----------------G-----TA-AAAATGTACAACTCAGTAAG---------CTATAC-CATATAAAGTTTTTATA------------TTCTTTATCAGTATCAACAGCCGAGTCGATAGAGACCTGTCAGTCCGTT--------CG----------------TTTCTACGGAAACTAGACTGTCAGTT------------------------TCAAAGCTATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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.................................................................................................................................................................................................................................CTGAATTATACCT--------------------TTATAGA------G......................................................................................................................................................................................................................................2111.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATAGAGACCTGTCAGTCCGT.......................................................................................2711.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GTCGATAGAGACCTGTCAGTCCGTT--------CG----------------TT..........................................................2911.00100010000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................TTATCAGTATCAACAGCCGAGTT............................................................................................................2320.50100010000000000000
droSec2
AGCT-TTCA-----CGC-TTTCGAATAACATAATTTAATTAC-------------------GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CTGAATTATACCT--------------------TTATAGA------CGGCTT----------------G-----TA-AAAATGTACAACTCAGTAAG---------CTATAC-CATATAAAGTTTTTATATA-----------TTTTTATCAGTATCAACAGCCGAGTCGATAGAGCCCTGTCAGTCCGTT--------CG----------------TTTCTACGGAAACTAGACTGTCAGTT------------------------TCAAAGCTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
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.......................................................................................................................................................................................................................................................................................................................................................................................CAGTATCAACAGCCGAGTCG...........................................................................................................2030.3310001
droYak3
CCTAA-AG--AAGAAGC-------------------------CATTGCC-AGCTTACCCTT--------AATTT-TAGA-----------AA--------------------------AATT-----ACCCCAA-------------------------------------------------------------------------AAAATGAT----------CATAATTATACCCGTTTC-------TCGTA--G------AGTAAAAGGGTATA--CTAGATT-CGT--T-----GA-AAAGTGTGTAACAGGCAGAAGGAAGCGTTTCCGAC-CATATAAAGTGT--ATA------------TTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCATCTGTC--------TG----------------TGCTTATCAAGGTCGAGATCTCAG--------------------GAACTATAAAAACTAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTTC.........................................................................................................................................................................25200.9018000000000018
...............................................................................................................................................................................................................................................TTTC-------TCGTA--G------AGTAAAAGGGT...................................................................................................................................................................................................................................21160.631007000120000
.............................................................................................................................................................................................................................................................................................TT-CGT--T-----GA-AAAGTGTGTAACAGGCAGAA....................................................................................................................................................................................28150.20300000000003
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATCTCAG--------------------GAA.............16200.15300000000003
...............................................................................................................................................................................................................................................TTTC-------TCGTA--G------AGTAAAAGGGTA..................................................................................................................................................................................................................................22160.13202000000000
...................................................................................................................................................................................................................................................................................................................GTGTAACAGGCAGAAGGAAGCGTTTCCG.......................................................................................................................................................................28130.08101000000000
.............................................................................................................................................................................................................................................................................................TT-CGT--T-----GA-AAAGTGTGTAACAGGCAGAAG...................................................................................................................................................................................29150.07100000000001
..............................................................................................................................................................................................................................................................................................................AAAGTGTGTAACAGGCAGAAGGAAG...............................................................................................................................................................................25150.07100100000000
.............................................................................................................................................................................................................................................................................................TT-CGT--T-----GA-AAAGTGTGTAACAGGCAGA.....................................................................................................................................................................................27150.07100000000001
...............................................................................................................................................................................................................................................TTTC-------TCGTA--G------AGTAAAAGGG....................................................................................................................................................................................................................................20180.06101000000000
................................................................................................................................................................................................................................................TTC-------TCGTA--G------AGTAAAAGGGTA..................................................................................................................................................................................................................................21190.05101000000000
.....................................................................................................................................................................................................................................................................................................T-----GA-AAAGTGTGTAACAGGCAGA.....................................................................................................................................................................................22190.05101000000000
...................................................................................................................................................................................................................................................................................................................GTGTAACAGGCAGAAGGAAGCG.............................................................................................................................................................................22190.05100000010000
..................................................................................................................................................................................................................................................................................................................TGTGTAACAGGCAGAAGGAAGCGTT...........................................................................................................................................................................25190.05100100000000
....................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTTCC........................................................................................................................................................................26200.05100000100000
..........................................................................................................................................................................................................................................................TCGTA--G------AGTAAAAGGGTATA--..............................................................................................................................................................................................................................20200.05100100000000
..................................................................................................................................................................................................................................................................................................................................................................A------------TTCTTGATCAGGATCAATAGCCGA...............................................................................................................25200.05101000000000
............................................................................................................................................................................................................................................................................................ATT-CGT--T-----GA-AAAGTGTGTAAA............................................................................................................................................................................................21200.05110000000000
................................................................................................................................................................................................................................................TTC-------TCGTA--G------AGTAAAAGG.....................................................................................................................................................................................................................................18200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAG--------------------GAACTATAAAAA....20200.05101000000000
droEre2
GAGG-CTG----AGAGC-------------------------TAATGAGGTGTA-C-GA-----GT-ATATTAA-TG---------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATTATACGT--TGC-------TTGTA--A------AATAAGAGGGTATA--CTAGATT-AGTTG-AATGTTG-AAAGTATGTTGAATGCAGAAGGAAGCGTTTTCGAC-CATCTAAAGTATTTATA------------TTCTTGATCAGGATCACTAGCCAAGTTGATCTGATCATGTCCGTCTGTC--------CG----------------TATAAACGC----CTCGATCTCAG--------------------GAACTATAAAAGCTAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACGC----CTCGATCTCAG--------------------GAA.............21130.0810000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAACGC----CTCGATCTCAG--------------------G...............21150.0711000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGTC--------CG----------------TATAAACGC----CTCGATC........................................22180.0611000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTC--------CG----------------TATAAACGC----CT.............................................20180.0611000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACGC----CTCGATCTCAG--------------------................19200.0510100000
dp5
TCCAG-AG----GGGAC-------------------------CAGGGAAGTGGATG-TG---A-----------------CAAGTGCGACAATTGTAAGAAAACCCAGAAGC--------------------------------------------------------------------------------------------------------AATGAGCCCTATTTTTATACCCGATAC-------TCAAAATG------AGTATAGAGGTATA--TTAGATT-TGTGGTGAACTTG-GATGTGTGTAACGTCGAGAAGGAAGCGTTTCCGAC-CCCATAAAATATATACATATG----TATATTCATGATCAGCATCAATAGCCGAGTCGATTGAGCAATGCCTGTCTGTC--------CG----------------TCCCTATGAGAGCCTAGTGCTCAG------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................TT-TGTGGTGAACTTG-GATGTG..................................................................................................................................................................................................2112.0020000000020
.............................................................................................................................................................................................................................................................................................TT-TGTGGTGAACTTG-GATGTGTGT...............................................................................................................................................................................................2411.0010000000010
.............................................................................................................................................................................................................................................................................................TT-TGTGGTGAACTTG-GATGTGTG................................................................................................................................................................................................2311.0010000000100
..............................................................................................................................................................................................................................................................................................................................................................................ATTCATGATCAGCATCAATAG...................................................................................................................2150.2010000100000
..................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGCATCAATAGCCGAGTCGAT.........................................................................................................2750.2010100000000
..................................................................................................................................................................................................................................................................................TATA--TTAGATT-TGTGGTGAAC............................................................................................................................................................................................................2150.2010000000100
..............................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAGCA...................................................................................................21180.1730300000000
...............................................................................................................................................................................................................................................................................................................................GAAGGAAGCGTTTCCGAC-CCCATAAAA...........................................................................................................................................................2760.1710100000000
..................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGCATCAATAGCCGAGTCG...........................................................................................................2560.1710100000000
..................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGCATCAATAGCCGAGTC............................................................................................................2460.1710100000000
..................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGCATCAATAGCCGAGT.............................................................................................................2360.1710100000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGATT........................................................................................................23200.1530300000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCATCAATAGCCGAGTCGATTGAGCA...................................................................................................26160.0610100000000
....................................................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCGAGT.............................................................................................................21200.0510000010000
.............................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGA......................................................................................................19200.0510000001000
droPer2
TCCAG-AG----GGGAC-------------------------CAGGGAAGTGGATG-TG---A-----------------CAAGTGCGACAATTGTAAGAAAACCCAGAAGC--------------------------------------------------------------------------------------------------------AAAGAGCCCTATTTTTATACCCGATAC-------TCAAAATG------AGTATAGAGGTATA--TTAGATT-TGTGGTGAAATTG-GATGTGTGTAACGTCGAGAGGGAAGCGTTTCCGAC-CCCATAAAGTATATACATATGTATGTATATTCATGATCAGCATCAATAGCCGAGTCGATTGAGCAATGCCTGTCTGTC--------CG----------------CCCCTATGAGCGCCTAGTGCTCAG-----------------------------AGGCTATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................GTGGTGAAATTG-GATGTGTGTAACGTCG........................................................................................................................................................................................2811.001000001
.....................................................................................................................................................................................................................................................................................................TGAAATTG-GATGTGTGTAACG...........................................................................................................................................................................................2130.331000100
.............................................................................................................................................................................................................................................................................................TT-TGTGGTGAAATTG-GATG....................................................................................................................................................................................................1970.141000001
.................................................................................................................................................................................................................................................................................................GTGGTGAAATTG-GATGTGTGTT..............................................................................................................................................................................................22100.101000001
..................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGCATCAATAGCCGAGTCG...........................................................................................................25200.051010000
........................................................................................................................................................................................................................................ATACCCGATAC-------TCAAAATG------AG............................................................................................................................................................................................................................................21200.051000001
droWil2
GATG-ATA--------C-------------------------AGAAAAAGAGTTTG-GA---A-----------------CATGTAAA--AATA------------------TTA------T-----G-----G--------CCAAGGACTGCAAGGTTATGTATATAAACA-----------------------------------------------------TCGGCACATACCC--------------------TTGTAAA-----AGGGTATA--TTAATTT-TGG--T-----CA-GAAGTGTGCAACGCATAGAAGGAAGCATTTCCGAC-CATATAAAGTATATATA------------TTCTTGATCAGCATGACGAGACGAGTTTATATAGCCATGTCCGTCCGTC--------TG----------------GATCAACGCAAACTCCTCCTAGATCG------------------------TAAGAGCTACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------GATCAACGCAAACTCCTCCTAGATCG------------------------..........28150.60909000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGCAAACTCCTCCTAGATCG------------------------..........24160.25404000
............................................................................................................................................................................................................................................................................................TTT-TGG--T-----CA-GAAGTGTGCAACGCAT........................................................................................................................................................................................25200.25500050
......................................................................................AA--AATA------------------TTA------T-----G-----G--------CCAAGGACTG..............................................................................................................................................................................................................................................................................................................................................................22200.10220000
...........................................................................................................................................................................................................................................................................................................................CATAGAAGGAAGCATTTCCGAC-CA..................................................................................................................................................................24200.10202000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAAACTCCTCCTAGATC...................................21200.10202000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGCAAACTCCTCCTAGATCG------------------------TAA.......27130.08101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................C--------TG----------------GATCAACGCAAACTCCTCCTAGATCG------------------------..........29150.07101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGCAAACTCCTCCTAGATCG------------------------TA........25150.07101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------GATCAACGCAAACTCCTCCTAGATCG------------------------..........27160.06101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAAACTCCTCCTAGATCG------------------------..........22180.06101000
...................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATGACGAGACG................................................................................................................19200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................C--------TG----------------GATCAACGCAAACTCCTCCTAGAT....................................27200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCCGTC--------TG----------------G...........................................................21200.05100010
............................................................................................................................................................................................................................................................................................TTT-TGG--T-----CA-GAAGTGTGCAA.............................................................................................................................................................................................20200.05100010
................................................................................................................................................................................................................................................................................................TGG--T-----CA-GAAGTGTGCAACGCATAG......................................................................................................................................................................................24200.05100010
..TG-ATA--------C-------------------------AGAAAAAGAGTTTG-GA---A-----------------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
................................................................................CATGTAAA--AATA------------------TTA------T-----G-----G--------CCAAGG..................................................................................................................................................................................................................................................................................................................................................................24200.05101000
....................................................................................TAAA--AATA------------------TTA------T-----G-----G--------CCAAGGACT...............................................................................................................................................................................................................................................................................................................................................................23200.05100010
...........................................GAAAAAGAGTTTG-GA---A-----------------CATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
...G-ATA--------C-------------------------AGAAAAAGAGTTTG-GA---A-----------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100
.................................................................................ATGTAAA--AATA------------------TTA------T-----G-----G--------CCAAGGAC................................................................................................................................................................................................................................................................................................................................................................25200.05110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------GATCAACGCAAACTCCTCCTAGAT....................................26200.05101000
.............................................................................................A------------------TTA------T-----G-----G--------CCAAGGACTGCA............................................................................................................................................................................................................................................................................................................................................................19200.05101000
............................................................................................................................................................................................................................................................................................................................................................................................TGACGAGACGAGTTTATATAGCCATG................................................................................................26200.05101000
............................................................................................................................................................................................................................................................................................................A-GAAGTGTGCAACGCATAGAAGGAAGC..............................................................................................................................................................................27200.05100010
droVir3
CTTT---CATGAGAGTT-------------------------TAATGCGGGGGTTC-CG-----GC---ATATA-TGAA-----------AATA------------------GCAGC----TGGTGTACTACCA-------------------------------------------------------------------------G-----------TTGTATTATTTTTATACCC--------------------TTGCAGA------GGATATTTTTTTATTT-TGT--------CATGAAGTGTGTAACGCATAGAAGGAGACATCTCCGAC-CCCATAAAGTAT--ATA------------TTCTTGATCAGCATCAACAGCCGAGTCGATATAGCCATTTCCGTCTGTC--------TA----------------TTTCTATGCGAACTAGTCTCTCAGAT------------------------TTAAAGCTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................AAGTGTGTAACGCATAGAAGGAGACA.............................................................................................................................................................................2684.0032003010001040100000000000214500000132301000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAGTGTGTAACGCATAGAAGGAG................................................................................................................................................................................2391.2211000001200000000000000002212000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAGTGTGTAACGCATAGAAGG..................................................................................................................................................................................21120.678000011000000000000000000102200000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGCGAACTAGTCTCTCAGAT------------------------TT........2630.672000000000000000000000000000000200000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................ATA------------TTCTTGATCAGCATCAACAG...................................................................................................................23200.6513000000000000000000007000000006000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAGTGTGTAACGCATAGAAGGAGA...............................................................................................................................................................................2480.635001000000000000000000000101100000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAGTGTGTAACGCATAGAAGGA.................................................................................................................................................................................22110.556001010000000000000000000100100000010000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................AAGTGTGTAACGCATAGAAGGAGAC..............................................................................................................................................................................2580.504000000001000000000000000200000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................T--ATA------------TTCTTGATCAGCATCAACAGCCG................................................................................................................27200.459000000000000000000000000000001000800000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAACAGCCGAGT.............................................................................................................26200.408002000000000000000002000000000000000000400000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAGTGTGTAACGCATAGAAGGAGACATC...........................................................................................................................................................................2880.383000000000000000000000000101000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAACAGCCGAGTCG...........................................................................................................25200.357000000000000000000000000000070000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGCGAACTAGTCTCTCAGAT------------------------T.........2530.331000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAACAGCCGAGTCGA..........................................................................................................26200.255000000000000000000000000000000001000000400000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAACAGCCGAGTCG...........................................................................................................27200.255000000000000000000000000000000000500000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GAAGTGTGTAACGCATAGAAGGAGACA.............................................................................................................................................................................2780.252000000000000000000000000000000010001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAGTGTGTAACGCATAGAAG...................................................................................................................................................................................20130.233000000000000000000000000100100000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAGTGTGTAACGCATAGAAGGAGT...............................................................................................................................................................................24120.172001000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TAAAGTAT--ATA------------TTCTTGATCAG............................................................................................................................22200.102000000000000000000000000000002000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AACGCATAGAAGGAGACATCTCCGAC-C...................................................................................................................................................................27200.102000000000000000000000000000020000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ACGCATAGAAGGAGACATCTCCGAC-....................................................................................................................................................................25200.102000000000000000000000000000000000000000000000000000000000000002
......................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGATA........................................................................................................24200.102000000020000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAACAGCCGAG..............................................................................................................25200.102000000000000000000000000001000100000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................T--ATA------------TTCTTGATCAGCATCAACA....................................................................................................................23200.102000000000000000000000000000000000000000200000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TAT--ATA------------TTCTTGATCAGCATCAACAG...................................................................................................................26200.102000000000000000000000000000000020000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TA------------TTCTTGATCAGCATCAACAGCCGAG..............................................................................................................27200.102000000000000000000000000010000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCATTTCCGTC..........................................................................................20110.091000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGCGAACTAGTCTCTCAGAT------------------------TTG.......27140.071000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAGTGTGTAACGCATAGA.....................................................................................................................................................................................18170.061000000000000000000000000000000000001000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................GTAT--ATA------------TTCTTGATCAGCATCAACAG...................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCGATATAGC....................................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAACAGCCGAGTCGA..........................................................................................................28200.051000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AGACATCTCCGAC-CCCATAAAGT..........................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAACAGCCGA...............................................................................................................24200.051000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAACAGCCG................................................................................................................23200.051000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGA..........................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TAACGCATAGAAGGAGACATC...........................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAACAGCCGAGTCGATA........................................................................................................28200.051000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TAAAGTAT--ATA------------TTCTTGATCAGC...........................................................................................................................23200.051000000000000000000000000000000000001000000000000000000000000000
droMoj3
CACAA-AA------GAC-------------------------AAAAAAGGTGCG-C-AC-----GC---ACGCA-TGACC---------AGG---------------------CATGGTCTT-----ACTACGA-------------------------------------------------------------------------G----------------ATATTATTATACCCTGAACCCATTTTCAATG--G------GAAATCAGGGTATA--ATGGTTT-TGT--T-----GA-AAAGTATGTAACAGGCAGAAGGAGGCGTGGCAGAC-CCCACAAAGTATATATA------------TTCTTGATTAGGGTGACTAGCTTAGTCGATTTGGCCCTGTCCGTCTGTC--------TG----------------TCTGTCCGTATGT------------ATGAACGCGTCGATCTCAGAAGATCTAAGAGCTAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................TATATA------------TTCTTGATTAGGGTGA.......................................................................................................................2250.201010000
....................................................................................................................................................................................................................................................................................................................................................................................................TTAGTCGATTTGGCCCTGTCC.............................................................................................21200.153100020
..........................................................................................................................................................................................................................................................................................GGTTT-TGT--T-----GA-AAAGTATGTAAC............................................................................................................................................................................................2380.131100000
....................................................................................................................................................................................................................................................................................................................................................................................................TTAGTCGATTTGGCCCTGTCCGTC..........................................................................................24200.051000010
...................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAGGCGT............................................................................................................................................................................23200.051000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------------ATGAACGCGTCGATCTCAGAAGAT...........26200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTCGATTTGGCCCTGTC..............................................................................................21200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTC--------TG----------------TCTGTCCGTATG................................................22200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................TTAGTCGATTTGGCCCTGTCCGTCT.........................................................................................25200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................TC--------TG----------------TCTGTCCGTATGT------------ATGA...............................21200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................TAGTCGATTTGGCCCTGTCCGT...........................................................................................22200.051000010
droGri2
AAAT-TTGT-----ACA-ACTGAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTAATATCC--------------------TTGCAGA------TTGTATT--ATAATTT-TGA--T-----TGCACAGCATTTTAGGCATTAAAGGGGACGTCTCCTAAACTCAAAAAGTATATATG------------TTCTTGGTCAACATCACTATTCGAGTAGATATAGCCATTTTCATCCGTCTATC----TG----------------CTTCTAAGCGAGCTAATGCCTAAGTT------------------------TTGAAGATATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:11 AM