dan_3345

Name	Class	Family	Strand
TRIM	LINE	LOA	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAGTGCCCCCAATCGCGATTGCCCCAATCGCTAGGCTGCATTCCGGTCTGGTGAGAGCAATAAGTCTCGCCGATCTTTTCTGAGAGCGTGTCGGCCAGATCAGACGTGATGTTCTACAGGTCTGGAGATTACTCCATTTCCTATTGGCTGCCAGGTCGAAAAACTCCCTGCACTTTAGCCTGCAAGTAGCCAAGGGTATGCCTACAAGTTCTTTCTCCGGTAGGAGAGTGTTGGTAGTCCCTGCCCTAGCT ****************************************************************************************************************...(((..(((((....)))))...)))....((((((((((.(((.............))).)))))...)))))***********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M058 embryo	M044 female body	V039 embryo	V106 head	V105 male body	V055 head
....................................................................................................................................................................TCCCTGCACTTTAGCCTGCAAGTAGC.............................................................	26	0	20	11.90	238	238	0	0	0	0	0
..................................................................................................................TACAGGTCTGGAGATTACTCCATTTCC..............................................................................................................	27	0	20	6.35	127	127	0	0	0	0	0
.................................................................................................................CTACAGGTCTGGAGATTACTCCATTTCC..............................................................................................................	28	0	20	4.00	80	80	0	0	0	0	0
..............................................................................TCTGAGAGCGTGTCGGCCAGATCAGAC..................................................................................................................................................	27	0	20	1.90	38	21	17	0	0	0	0
..........................................................................................................................................TCCTATTGGCTGCCAGGTCGAAAAAC.......................................................................................	26	0	20	1.70	34	0	34	0	0	0	0
..................................................................................................................TACAGGTCTGGAGATTACTCCATTTC...............................................................................................................	26	0	20	1.65	33	33	0	0	0	0	0
...................TGCCCCAATCGCTAGGCTGCATTCCGG.............................................................................................................................................................................................................	27	0	20	1.40	28	0	28	0	0	0	0
................................................................................................................TCTACAGGTCTGGAGATTACTCCATT.................................................................................................................	26	0	20	1.05	21	3	18	0	0	0	0
........................CAATCGCTAGGCTGCATTCCGGTC...........................................................................................................................................................................................................	24	0	20	0.85	17	17	0	0	0	0	0
..........................................................................................................................................................................CACTTTAGCCTGCAAGTAGCCAAGGG.......................................................	26	0	20	0.80	16	16	0	0	0	0	0
.............................................................................................................................................TATTGGCTGCCAGGTCGAAAAACTC.....................................................................................	25	0	20	0.80	16	16	0	0	0	0	0
.............................................................................................................TGTTCTACAGGTCTGGAGATTACTCCAT..................................................................................................................	28	0	20	0.75	15	0	15	0	0	0	0
...................TGCCCCAATCGCTAGGCTGCATTCCGGT............................................................................................................................................................................................................	28	0	20	0.55	11	0	11	0	0	0	0
..........................................................................................................................................................................CACTTTAGCCTGCAAGTAGCCAAG.........................................................	24	0	20	0.50	10	9	0	0	1	0	0
.............................................................................................................TGTTCTACAGGTCTGGAGATTACTC.....................................................................................................................	25	0	20	0.45	9	0	9	0	0	0	0
.........................................................................................................................................................................................................CTACAAGTTCTTTCTCCGGTAGGAGA........................	26	0	20	0.40	8	7	0	0	1	0	0
........................CAATCGCTAGGCTGCATTCCGGTCT..........................................................................................................................................................................................................	25	0	20	0.30	6	6	0	0	0	0	0
...CGCCCCCCATCGTGATTGCC....................................................................................................................................................................................................................................	20	3	7	0.29	2	0	2	0	0	0	0
..........................................................................................TCGGCCAGATCAGACGTGATGTTC.........................................................................................................................................	24	0	20	0.25	5	5	0	0	0	0	0
................................................................................TGAGAGCGTGTCGGCCAGATCAGAC..................................................................................................................................................	25	0	20	0.25	5	3	2	0	0	0	0
.................................................................................................................................TACTCCATTTCCTATTGGCTGCCAGGTC..............................................................................................	28	0	20	0.25	5	0	5	0	0	0	0
..........................................................................................................................................................................................TAGCCAAGGGTATGCCTACAAGTTCT.......................................	26	0	20	0.25	5	5	0	0	0	0	0
.................................GGCTGCATTCCGGTCTGGTGAGAGC.................................................................................................................................................................................................	25	0	13	0.23	3	0	0	0	3	0	0
...................TGCCCCAATCGCTAGGCTGCATTCC...............................................................................................................................................................................................................	25	0	20	0.20	4	4	0	0	0	0	0
.........................................................................................................................................................................GCACTTTAGCCTGCAAGTAGCCAAGGG.......................................................	27	0	20	0.20	4	1	3	0	0	0	0
................................................................................................................................................TGGCTGCCAGGTCGAAAAACTCCCT..................................................................................	25	0	20	0.20	4	0	4	0	0	0	0
...................................................TGAGAGCAATAAGTCTCGCCGATCTTT.............................................................................................................................................................................	27	0	20	0.20	4	0	4	0	0	0	0
.......................................................................GATCTTTTCTGAGAGCGTGTCGGCCA..........................................................................................................................................................	26	0	20	0.20	4	0	4	0	0	0	0
........................................TTCCGGTCTGGTGAGAGCAATAAGTC.........................................................................................................................................................................................	26	0	12	0.17	2	2	0	0	0	0	0
.........................................................................................................................................................................................................CTACAAGTTCTTTCTCCGGTAGGAGATT......................	28	1	13	0.15	2	1	0	1	0	0	0
..........................................................................................................................................................................................................TACAAGTTCTTTCTCCGGTAGGAGAGT......................	27	0	13	0.15	2	0	1	1	0	0	0
........................................................................................................................................................................TGCACTTTAGCCTGCAAGTAGCCAAG.........................................................	26	0	20	0.15	3	0	0	3	0	0	0
..........................................................................................................................................................................CACTTTAGCCTGCAAGTAGCCC...........................................................	22	1	20	0.15	3	3	0	0	0	0	0
..........................................................................................................TGATGTTCTACAGGTCTGGAGATTAC.......................................................................................................................	26	0	20	0.15	3	3	0	0	0	0	0
.......................CCAATCGCTAGGCTGCATTCCGGTC...........................................................................................................................................................................................................	25	0	20	0.15	3	0	3	0	0	0	0
...................TGCCCCAATCGCTAGGCTGC....................................................................................................................................................................................................................	20	0	20	0.15	3	0	3	0	0	0	0
..............................................................................................................................................ATTGGCTGCCAGGTCGAAAAACTCC....................................................................................	25	0	20	0.15	3	0	3	0	0	0	0
............................................................................................................................................................CGAAAAACTCCCTGCACTTTAGCCTG.....................................................................	26	0	20	0.15	3	0	3	0	0	0	0
.........................................................................................................................................TTCCTATTGGCTGCCAGGTCGAAAAA........................................................................................	26	0	20	0.15	3	0	3	0	0	0	0
..........................................................................................................................................................................................TAGCCAAGGGTATGCCTACAAGTTC........................................	25	0	20	0.15	3	3	0	0	0	0	0
..............................................................................TCTGAGAGCGTGTCGGCCAGATCAGACG.................................................................................................................................................	28	0	20	0.15	3	3	0	0	0	0	0
................................................................................................................................TTACTCCATTTCCTATTGGCTGCCAGG................................................................................................	27	0	20	0.15	3	0	3	0	0	0	0
......................................................................................................................................................................................................TGCCTACAAGTTCTTTCTCCGGT..............................	23	0	20	0.15	3	0	3	0	0	0	0
.............................................................................................................................................................................TTTAGCCTGCAAGTAGCCAAGGGTA.....................................................	25	0	20	0.15	3	0	3	0	0	0	0
........................CAATCGCTAGGCTGCATTCCG..............................................................................................................................................................................................................	21	0	20	0.10	2	0	2	0	0	0	0
...............................................................................CTGAGAGCGTGTCGGCCAGATC......................................................................................................................................................	22	0	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................TCCATTTCCTATTGGCTGCCAGGTCGAAA..........................................................................................	29	0	20	0.10	2	2	0	0	0	0	0
..........................................................................................................TGATGTTCTACAGGTCTGGAGATTACT......................................................................................................................	27	0	20	0.10	2	1	0	1	0	0	0
..................................................................................................................TAAAGGTCTGGAGATTACTCCATTTC...............................................................................................................	26	1	20	0.10	2	2	0	0	0	0	0
..................................................................................................................TACAGGTCTGGAGATTACTCCAT..................................................................................................................	23	0	20	0.10	2	0	0	2	0	0	0
...................TGCCCCAATCGCTAGGCTGCATTC................................................................................................................................................................................................................	24	0	20	0.10	2	2	0	0	0	0	0
.......................CCAATCGCTAGGCTGCATTCCGG.............................................................................................................................................................................................................	23	0	20	0.10	2	0	2	0	0	0	0
..........................................................................................................TGATGTTCTACAGGTCTGGAGATTA........................................................................................................................	25	0	20	0.10	2	2	0	0	0	0	0
......................................................................................................................................................................CCTGCACTTTAGCCTGCAAGTAGC.............................................................	24	0	20	0.10	2	2	0	0	0	0	0
..............................................................................................................................................................................TTAGCCTGCAAGTAGCCAAGG........................................................	21	0	20	0.10	2	0	2	0	0	0	0
...........................................................................................................................................................................ACTTTAGCCTGCAAGTAGCCAAGG........................................................	24	0	20	0.10	2	0	2	0	0	0	0
.......................................................................................................................................................................CTGTACTTTAGCCTGCAAGTAGC.............................................................	23	1	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................................................................................................TACAAGTTCTTTCTCCGGTAGGAGAG.......................	26	0	20	0.10	2	0	0	2	0	0	0
.........................................................................................................................................TTCCTATTGGCTGCCAGGTCGAAAA.........................................................................................	25	0	20	0.10	2	1	1	0	0	0	0
.............................................................................................................................................TATTGGCTGCCAGGTCGAAAAACT......................................................................................	24	0	20	0.10	2	0	2	0	0	0	0
..............................................TCTGGTGAGAGCAATAAGTCTCGC.....................................................................................................................................................................................	24	0	20	0.10	2	0	0	2	0	0	0
......................................................................................................................................................................................................TGCCTACAAGTTCTTTCTCCGGTA.............................	24	0	20	0.10	2	0	2	0	0	0	0
......................CCCAATCGCTAGGCTGCATTCCGG.............................................................................................................................................................................................................	24	0	20	0.10	2	0	2	0	0	0	0
...................................................TGAGAGCAATAAGTCTCGCCGATCTT..............................................................................................................................................................................	26	0	20	0.10	2	0	2	0	0	0	0
....................................................GAGAGCAATAAGTCTCGCCGATCTTT.............................................................................................................................................................................	26	0	20	0.10	2	0	2	0	0	0	0
.........................AATCGCTAGGCTGCATTCCGGTCTGG........................................................................................................................................................................................................	26	0	12	0.08	1	0	1	0	0	0	0
........................CAATCGCTAGGCTGCATTCCGGTCTGGT.......................................................................................................................................................................................................	28	0	12	0.08	1	0	1	0	0	0	0
...........................................................................................................................................................................................................ACAAGTTCTTTCTCCGGTAGGAGAGTG.....................	27	0	12	0.08	1	0	1	0	0	0	0
....................................................................................................................................................................................................................TTCTCCGGTAGGAGAGTGTTGGTAGTCCC..........	29	0	12	0.08	1	0	1	0	0	0	0
.........................................TCCGGTCTGGTGAGAGCAATAAGTCTC.......................................................................................................................................................................................	27	0	12	0.08	1	0	1	0	0	0	0
..........................................................................................................................................................................................................TACAAGTTCTTTCTCTGGTAGCAGAGTGT....................	29	2	13	0.08	1	1	0	0	0	0	0
.....................................GCATTCCGGTCTGGTGAGAGCAATAA............................................................................................................................................................................................	26	0	13	0.08	1	0	1	0	0	0	0
........................CAATCGCTTGGCTGCATTCCGGTCTG.........................................................................................................................................................................................................	26	1	13	0.08	1	0	1	0	0	0	0
.................................GGCTGCATTCCGGTCTGGTGGGAGC.................................................................................................................................................................................................	25	1	13	0.08	1	0	0	0	1	0	0
.........................................................................................................................................................................................................CTACAAGTTCTTTCTCCGGTAGGAGCGT......................	28	1	13	0.08	1	0	0	1	0	0	0
.........................................................................................................................................................................................................CGACAAGTTCTTTCTCCGGAAGGAGAGT......................	28	2	13	0.08	1	1	0	0	0	0	0
...............................TAGGCTGCATTCCGGTCTGGTGAGAGCA................................................................................................................................................................................................	28	0	13	0.08	1	0	1	0	0	0	0
...............................TAGGCTGCATTCCGGTCTGGTGAG....................................................................................................................................................................................................	24	0	13	0.08	1	1	0	0	0	0	0
........................................TTCCGGTCTGGTGAGAGCAATA.............................................................................................................................................................................................	22	0	13	0.08	1	0	1	0	0	0	0
...............................TAGGCTGCATTCCGGTCTGGTGAGAGC.................................................................................................................................................................................................	27	0	13	0.08	1	0	1	0	0	0	0
.................................GGCTGCATTCCGGTCTGGTGAG....................................................................................................................................................................................................	22	0	13	0.08	1	0	1	0	0	0	0
.........................................................................................................................................................................................................CTACAAGTTCTTTCTCCGGTAGGAGAGT......................	28	0	13	0.08	1	0	0	0	0	1	0
..................................GCTGCATTCCGGTCTGGTGAGAGC.................................................................................................................................................................................................	24	0	13	0.08	1	0	0	0	1	0	0
...........................................CGGTCTGGTGAGAGCAATAAGTCTCGC.....................................................................................................................................................................................	27	0	13	0.08	1	0	1	0	0	0	0
...........................TCGCTAGGCTGCATTCCGGTCTG.........................................................................................................................................................................................................	23	0	14	0.07	1	0	1	0	0	0	0
.....................................GCATTCCCGTCTGGTGAGAGCAATAG............................................................................................................................................................................................	26	2	14	0.07	1	0	0	1	0	0	0
..........................ATCGCTAGGCTGCATTCCGGTCTGG........................................................................................................................................................................................................	25	0	14	0.07	1	1	0	0	0	0	0
........................................TTGCGGTCTGGTGAGAG..................................................................................................................................................................................................	17	1	14	0.07	1	0	0	0	0	0	1
..........................................................................................................................................................................................................TACAAGTTCTTTCTCCGGTAGGAGAGTT.....................	28	1	14	0.07	1	0	0	0	1	0	0
..........................................................................................................................................................................CACTTTAGCCTGCAAGTAGCCA...........................................................	22	0	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................TTTCCTATTGGCTGCCAGGTCGAAAAAC.......................................................................................	28	0	20	0.05	1	0	0	1	0	0	0
..................................................................................................................TTCAGGTCTGGAGATTACTCCATTTCC..............................................................................................................	27	1	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................TGCAAGTAGCCAAGGGTATGCCTACAAG...........................................	28	0	20	0.05	1	1	0	0	0	0	0
........................................................................................TGTCGGCCAGATCAGACGTAATGTT..........................................................................................................................................	25	1	20	0.05	1	0	0	1	0	0	0
............................................................................................................ATGTTCTACAGGTCTGGAGATTACT......................................................................................................................	25	0	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................CCCTGCACTTTAGCCTGCAAGTAGCCC...........................................................	27	1	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................TGCACTTTAGCCTGCAAGTAGCCAAGGGT......................................................	29	0	20	0.05	1	1	0	0	0	0	0
.......................................TTTGCGGTCTGGTGAGAGTA................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	1
....................................................................................AGCGTGTCGGCCAGATCAGACGTGATG............................................................................................................................................	27	0	20	0.05	1	0	1	0	0	0	0
...........................................................................TTTTCTGAGAGCGTGTCGGC............................................................................................................................................................	20	0	20	0.05	1	0	1	0	0	0	0
..................................................................................................................TACAGGTCTGGAGATTACTCC....................................................................................................................	21	0	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................TCGATAAACTCCCTGCACTTTAGCC.......................................................................	25	1	20	0.05	1	1	0	0	0	0	0
.................................................................................GAGAGCGTGTCGGCCAGATCAG....................................................................................................................................................	22	0	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................TCCATTTCCTATTGGCTGCCAGGTCG.............................................................................................	26	0	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................CACTTTAACCTGCAAGTAGCCAAGG........................................................	25	1	20	0.05	1	1	0	0	0	0	0
...........................................................................................................GATGTTCTACAGGTCTGGAGATTACT......................................................................................................................	26	0	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................CTTTAGCCTGCAAGTAGCCAAGGGTA.....................................................	26	0	20	0.05	1	0	1	0	0	0	0
..........................................................................................................TTATGTTCTACAGGTCTGGAGATTACTC.....................................................................................................................	28	1	20	0.05	1	1	0	0	0	0	0
...............................................................................CTGAGAGCGTGTCGGCCA..........................................................................................................................................................	18	0	20	0.05	1	0	1	0	0	0	0
..................................................................................................................TTCAGGTCTGGAGATTACTCCATTTC...............................................................................................................	26	1	20	0.05	1	1	0	0	0	0	0
.......................CCAATCGCTACGCTGCATTCCGGT............................................................................................................................................................................................................	24	1	20	0.05	1	1	0	0	0	0	0
.................................................................................................................CTACAGGTCTGGAGATTACTCCA...................................................................................................................	23	0	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................AAAAACTCCCTGCACTTTAGC........................................................................	21	0	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................AAAACTCCCTGCACTTTAGCCTGCA...................................................................	25	0	20	0.05	1	0	1	0	0	0	0
.................................................................................................................CTACAGGTCTGGAGATTACTCAATTTCC..............................................................................................................	28	1	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................ATTGGCTGCCAGGTCGAAAAAGTCC....................................................................................	25	1	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................TTAGCCTGCAAGTAGCCAAG.........................................................	20	0	20	0.05	1	0	0	1	0	0	0
........................................................................................................................................TGTCCTATTGGCTGCCAGGTCGAAAAAC.......................................................................................	28	1	20	0.05	1	1	0	0	0	0	0
.........................................................................TCTTTTCTGAGAGCGTGTCGGCCAG.........................................................................................................................................................	25	0	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................TCCTATTGGCTGCCAGGTCGAAAA.........................................................................................	24	0	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................TTGAAAAACTCCCTGCACTTTAGCC.......................................................................	25	1	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................TCCTAGTGGCTGCCAGGTCGAAAAAC.......................................................................................	26	1	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................GGCCGAAAAACTCCCTGCACTTTAGC........................................................................	26	1	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................CGAAAAACTCCCTGCACTTTAGCCTGC....................................................................	27	0	20	0.05	1	0	1	0	0	0	0
.................................................................................................................CGACAGGTCTGGAGATTACTCC....................................................................................................................	22	1	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................TCACTTTAGCCTGCAAGTAGCCAAGGGTA.....................................................	29	1	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................GCCTGCAAGTAGCCAAGGGTATGC..................................................	24	0	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................TGGCTGCCAGGTCGAAAAACTCCCTGCAC..............................................................................	29	0	20	0.05	1	0	1	0	0	0	0
.............................................................................TTCTGAGAGCGTGTCGGCCAGATCAG....................................................................................................................................................	26	0	20	0.05	1	0	1	0	0	0	0
..........................................................................................TCGGCCAGATCAGACGTGATGT...........................................................................................................................................	22	0	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................AAACTCCCTGCACTTTAGCCTGCAAG.................................................................	26	0	20	0.05	1	0	1	0	0	0	0
.............................................................................................................TGTTCTACAGGTCTGGCGCTTACTCC....................................................................................................................	26	2	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................CACTTTAGCCTGCAAGTACCCAAGG........................................................	25	1	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................TCGAAAAAGTCCCTGCACTTTAGCC.......................................................................	25	1	20	0.05	1	0	1	0	0	0	0
...............................................................................................................TTCTACAGGTCTGGAGATTACTC.....................................................................................................................	23	0	20	0.05	1	0	1	0	0	0	0
.............................................................................................................TGTTCTACAGGGCTGGAGATTACTC.....................................................................................................................	25	1	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................CACTTTAGCCTGCAAGTAGCC............................................................	21	0	20	0.05	1	0	1	0	0	0	0
......................................................................................................GGCGTGATGTTCTACAGGTCTGGAGA...........................................................................................................................	26	1	20	0.05	1	1	0	0	0	0	0
.............................................................................................................TTTTCTACAGGTCTGGAGATTACTC.....................................................................................................................	25	1	20	0.05	1	1	0	0	0	0	0
..............................................................................TCTGAGAGCGTGTCGGCCAGATCAGACA.................................................................................................................................................	28	1	20	0.05	1	0	1	0	0	0	0
.............................................GTCTGGTGGGAGCAATAAGTCT........................................................................................................................................................................................	22	1	20	0.05	1	0	1	0	0	0	0
.......................CCATTCGCTAGGCTGCATTCCGGTC...........................................................................................................................................................................................................	25	1	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................GCCTTCAAGTAGCCAAGGGTATGCC.................................................	25	1	20	0.05	1	0	0	0	1	0	0
.............................................................................TTCTGAGAGCGTGTCGGCCAGATCAGA...................................................................................................................................................	27	0	20	0.05	1	0	1	0	0	0	0
....................................................................GCCGATCTTTTCTGAGAGCGCGTCGGC............................................................................................................................................................	27	1	20	0.05	1	0	0	0	0	1	0
....................GCCCCAATCGCTAGGCTGCATTCCGG.............................................................................................................................................................................................................	26	0	20	0.05	1	1	0	0	0	0	0
......................CCCAATCGCTAGGCTGCATTCCGGTCT..........................................................................................................................................................................................................	27	0	20	0.05	1	0	1	0	0	0	0
.....................CCCCAATCGCTAGGCTGCATTCCGGTC...........................................................................................................................................................................................................	27	0	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................................CAAGGGTATGCCTACAAGTTCT.......................................	22	0	20	0.05	1	1	0	0	0	0	0
...........................................................................TTTTCTGAGAGCGTGTCGGCCAGA........................................................................................................................................................	24	0	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................TTTCCTATTGGCTGCCAGGTCG.............................................................................................	22	0	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................TGCACTTTAGCCTGCAAGTAGCCAAGGG.......................................................	28	0	20	0.05	1	0	0	1	0	0	0
................................................................................................................TCTACAGGTCTGGAGATTACTCCATTTC...............................................................................................................	28	0	20	0.05	1	0	1	0	0	0	0
................GATTGCCCCAATCGCTAGG........................................................................................................................................................................................................................	19	0	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................TACGCCTACAAGTTCTTTCTCCGGT..............................	25	1	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................TGGAGATTACTCCATTTCCTATTGGCTG.....................................................................................................	28	0	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................GTCGAAAAACTCCCTGCACTTTA..........................................................................	23	0	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................AAAAACTCCCTGCACTTTAGCCTGC....................................................................	25	0	20	0.05	1	0	1	0	0	0	0
........................CAATCGCTAGGCTGCATTCCGGT............................................................................................................................................................................................................	23	0	20	0.05	1	0	1	0	0	0	0
...........................................................................TTTTCTGAGAGCGTGTCGGCCA..........................................................................................................................................................	22	0	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................TATGCCTACAAGTTCTTTCTCAGGT..............................	25	1	20	0.05	1	0	1	0	0	0	0
..............................................TCTGGTGAGAGCAATAAGTCT........................................................................................................................................................................................	21	0	20	0.05	1	0	0	1	0	0	0
...............................................................................................................................................................................................AAGGGTATGCCTACAAGTTCTTTCTC..................................	26	0	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................CATTTCCTATTGGCTGCCAGGTCGA............................................................................................	25	0	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................CAGGTCGAAAAACTCCCTGCACTTTAGCC.......................................................................	29	0	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................CCTGCAGGTAGCCAAGGGTATGCT.................................................	24	2	20	0.05	1	1	0	0	0	0	0
..........................................................................................................TGATGTTCTACAGGTCTGGAGATTACA......................................................................................................................	27	1	20	0.05	1	0	0	1	0	0	0
........................................................GCAATAAGTCTCGCCGATCTTTT............................................................................................................................................................................	23	0	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................CGAAAAACTCCCTGCACTTTAGCC.......................................................................	24	0	20	0.05	1	0	1	0	0	0	0
...................TGCCCCAAGCGCTAGGCTGCAGTCCGG.............................................................................................................................................................................................................	27	2	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................CTACAAGTTCTTTCTCCGGTAGGAG.........................	25	0	20	0.05	1	0	0	0	0	1	0
...................................................TGAGAGCAATAAGTCTCGCCGATCT...............................................................................................................................................................................	25	0	20	0.05	1	0	1	0	0	0	0
................................................................................................AGATCAGACGTGATGTTCTACAGGTC.................................................................................................................................	26	0	20	0.05	1	0	1	0	0	0	0
..........................................................................................................TGATGTTCTACAGGTCTGGAGATT.........................................................................................................................	24	0	20	0.05	1	0	1	0	0	0	0
...................TTCCCCAATCGCTAGGCTGCATTCCGGT............................................................................................................................................................................................................	28	1	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................TGCAAGTAGCCAAGGGTATGC..................................................	21	0	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................TACTCCATGTCCTATTGGCTGTCAGG................................................................................................	26	2	20	0.05	1	0	1	0	0	0	0
................GATTGCCCCAATCGCTAGGCTGC....................................................................................................................................................................................................................	23	0	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................AAACTCCCTGCACTTTAGCCTGCAAGTA...............................................................	28	0	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................CTACAAGTTCTTTCTCCGGTAGGAGCG.......................	27	1	20	0.05	1	0	0	1	0	0	0
.................................................................................................................CTACAGGTCTGGAGATTACTCC....................................................................................................................	22	0	20	0.05	1	0	0	1	0	0	0
............................................................................................................................................CTATTGGCTGCCAGGTCGAAAAACTCCC...................................................................................	28	0	20	0.05	1	0	1	0	0	0	0
....................GCCCCAATCGCTAGGCTGCATTCCGGTC...........................................................................................................................................................................................................	28	0	20	0.05	1	0	1	0	0	0	0
................................................................................................................TCTACAGGTCTGGAGATTACTCCAT..................................................................................................................	25	0	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................TTCCTATTGGCTGCCAGGTCGAAAAACTC.....................................................................................	29	0	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................AGGTCGAAAAACTCCCTGCACTTTAGC........................................................................	27	0	20	0.05	1	0	1	0	0	0	0
........................................................................................TTTCGGCCAGATCAGACGTGATGTTC.........................................................................................................................................	26	1	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................CTACAAGTTCTTTCTCCGGTATGAG.........................	25	1	20	0.05	1	0	0	1	0	0	0
.............................................................................................................TGTTCTACAGGTCTGGAGATTACTCCA...................................................................................................................	27	0	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................CCCTGCACTTTAGCCTGCAAGTAGCC............................................................	26	0	20	0.05	1	0	1	0	0	0	0
.............................................................................................................TGTCCTACAGGTCTGGAGATTACTCC....................................................................................................................	26	1	20	0.05	1	1	0	0	0	0	0
.............................................................................................................TGTTCTACAGGTCTGGAGATTACT......................................................................................................................	24	0	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................ATTTCCTATTGGCTGCCAGGTCGA............................................................................................	24	0	20	0.05	1	1	0	0	0	0	0
.................................................................................................................CTACAGGTCTGGAGATTACTC.....................................................................................................................	21	0	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................TTTCCTATTGGCTGCCAGGTCGAA...........................................................................................	24	0	20	0.05	1	0	1	0	0	0	0
.............................................................................................GCCAGATCAGACGTGATGTTCTACAGG...................................................................................................................................	27	0	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................CTTTAGCCTGCAAGTAGCCAAGG........................................................	23	0	20	0.05	1	1	0	0	0	0	0
...................TGCCCCAATCGCTAGGCTGCATTCCGGC............................................................................................................................................................................................................	28	1	20	0.05	1	1	0	0	0	0	0
..........................................................................................................TGATGTTCTACAGGTCTGGAGAT..........................................................................................................................	23	0	20	0.05	1	1	0	0	0	0	0
............................................................................................................ATGTTCTACAGGTCTGGAGATTACTCC....................................................................................................................	27	0	20	0.05	1	1	0	0	0	0	0
.............................................................................................................TGTTCTACAGGTCTGGAGATTA........................................................................................................................	22	0	20	0.05	1	0	0	1	0	0	0

GTCACGGGGGTTAGCGCTAACGGGGTTAGCGATCCGACGTAAGGCCAGACCACTCTCGTTATTCAGAGCGGCTAGAAAAGACTCTCGCACAGCCGGTCTAGTCTGCACTACAAGATGTCCAGACCTCTAATGAGGTAAAGGATAACCGACGGTCCAGCTTTTTGAGGGACGTGAAATCGGACGTTCATCGGTTCCCATACGGATGTTCAAGAAAGAGGCCATCCTCTCACAACCATCAGGGACGGGATCGA ***********************************************************...(((..(((((....)))))...)))....((((((((((.(((.............))).)))))...)))))****************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M044 female body	M058 embryo	V039 embryo	V105 male body	V106 head
....TGGGGGTTAGCGCTAACGGGGT.................................................................................................................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0
.....................GGGGTTAGCGATCCGACGTAAGGCC.............................................................................................................................................................................................................	25	0	20	0.30	6	6	0	0	0	0
........................................................CGTTATTCAGAGCGGCTAGAAAAG...........................................................................................................................................................................	24	0	20	0.10	2	2	0	0	0	0
...............................................................CAGAGCGGCTAGAAAAGACTCTCGC...................................................................................................................................................................	25	0	20	0.10	2	2	0	0	0	0
..............................................................................................GGTCTAGTCTGCACTAGAAGATGTC....................................................................................................................................	25	1	20	0.10	2	2	0	0	0	0
..........................................GGCCAGACCACTCTCGTTATTCAGA........................................................................................................................................................................................	25	0	12	0.08	1	1	0	0	0	0
.........................................................................................................................................................................................................................GCCATCCTCTCACAACCATCAGG...........	23	0	12	0.08	1	1	0	0	0	0
........................................AAGGCCAGACCACTCTCGTTATTCA..........................................................................................................................................................................................	25	0	12	0.08	1	1	0	0	0	0
.......................GGTTAGCGATCCGACGTAAGGCCAGAC.........................................................................................................................................................................................................	27	0	12	0.08	1	1	0	0	0	0
..............................................................................................................................................................................................................TCAAGAAAGAGGCCATCCTCTCACAA...................	26	0	12	0.08	1	0	1	0	0	0
.............................CGATCCGACGTAAGGCCAGACCACT.....................................................................................................................................................................................................	25	0	13	0.08	1	1	0	0	0	0
......................................GTAAGGCCAGACCACTCTCGTTATT............................................................................................................................................................................................	25	0	13	0.08	1	1	0	0	0	0
................................TCCGACGTAAGGCCAGACCACTCTCGT................................................................................................................................................................................................	27	0	13	0.08	1	1	0	0	0	0
................................TCCGACGTAAGGCCAGACCACTCTCG.................................................................................................................................................................................................	26	0	13	0.08	1	1	0	0	0	0
...........................AGCGATCCGACGTAAGGCCAGACCACTCT...................................................................................................................................................................................................	29	0	13	0.08	1	1	0	0	0	0
..................................CGACGTAAGGCCAGACCGCTCTCG.................................................................................................................................................................................................	24	1	13	0.08	1	0	0	0	0	1
.............................CGATCCGACGTAAGGCCAGACCACTCT...................................................................................................................................................................................................	27	0	13	0.08	1	1	0	0	0	0
.................................CCGACGTAAGGCCAGACCACTCTCGT................................................................................................................................................................................................	26	0	13	0.08	1	0	0	0	1	0
..................................CGACGTAAGGCCAGACCACTCT...................................................................................................................................................................................................	22	0	13	0.08	1	0	1	0	0	0
..........................TAGCGATCCGACGTAAGGCCAGACCAC......................................................................................................................................................................................................	27	0	13	0.08	1	0	1	0	0	0
...........................AGCGATCCGACGTAAGGCCAGACC........................................................................................................................................................................................................	24	0	14	0.07	1	1	0	0	0	0
............................GCGATCCGACGTAAGGCCAGAC.........................................................................................................................................................................................................	22	0	14	0.07	1	1	0	0	0	0
......................................................................................................CTGCACTACAAGATTTCCAGACCT.............................................................................................................................	24	1	20	0.05	1	0	1	0	0	0
........................................................................................................................................................TCCAGCTTTTTGAGGGACGTGAAAT..........................................................................	25	0	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................ACGTTCATCGGTTCCCATACGGATGTTC...........................................	28	0	20	0.05	1	1	0	0	0	0
.......................................................................................................TGCAGTACAAGATGTCCAGACC..............................................................................................................................	22	1	20	0.05	1	0	0	1	0	0
..........................................................................................AGCCGGTCTAGTCTGCACTACAACAT.......................................................................................................................................	26	1	20	0.05	1	0	1	0	0	0
........................................................................................ACAGCCGGTCTAGTCTGCACTACAAGATG......................................................................................................................................	29	0	20	0.05	1	1	0	0	0	0
..........................................................................................AGCCGGTCTAGTCTGCACTAC............................................................................................................................................	21	0	20	0.05	1	1	0	0	0	0
..............................................................................................GGTCTAGTCTGCACTACAAGATGTCCAG.................................................................................................................................	28	0	20	0.05	1	1	0	0	0	0
.................................................................................................CTAGTCTGCACAACAAGAGGTCCA..................................................................................................................................	24	2	20	0.05	1	0	0	1	0	0
....................TGGGGTTAGCGATCCGACGTAAGGCC.............................................................................................................................................................................................................	26	1	20	0.05	1	1	0	0	0	0
......................................................................................GCACAGCCGGTCTAGTCTGCAC...............................................................................................................................................	22	0	20	0.05	1	1	0	0	0	0
...........................................................................................................................................................................................TCGGTTCCCATACGGATGTTCAAG........................................	24	0	20	0.05	1	1	0	0	0	0
..............................................................................................GGTCTAGTCTGCACTACAAGAT.......................................................................................................................................	22	0	20	0.05	1	1	0	0	0	0
............................................................................................CCGGTCTAGTCTGCACTACAAGATGTCC...................................................................................................................................	28	0	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................CCCATACGGATGTTCAAGAAAGAGG.................................	25	0	20	0.05	1	0	1	0	0	0
.............................................................TTCAGAGCGGCTAGAAAAGACTCTCGC...................................................................................................................................................................	27	0	20	0.05	1	1	0	0	0	0
.............................CGATCCGACGTAAGGCCATAGC........................................................................................................................................................................................................	22	2	20	0.05	1	0	1	0	0	0
..........................................................................................................................................AGGATAACCGACGGTCCAGCTT...........................................................................................	22	0	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droAna3	scaffold_13417:5344099-5344349 +	dan_3345	CAGTGCCCCCAATCGCGATTGCCCCAATCGCTAGGCT-GCATTCCGGTCTGGTGAGAGCAATAAGTCTCGCCGATCTTTTCTGAGAGCGTGTCGGCCAGATCAGACGTGATGTTCTAC---------AGGTCTGGAGA-TTACTCCATTTCCTATTGGCTGCCAGG-TCGAAAAACTCCCTGCACTTTAGCCTGCAAGTAGCCAAGGG-TATGCCTACAAG----TTCT---------TTCTCCGGTAGGAGAGTGTT--GGTAGTCCCTGCCCTAGCT
droBip1	scf7180000395365:7751-7996 -		CAGTGTCCC-----GTGATGGCCTTGACCGCCAGACT-GCAGTCCTACCTATTGAGGGCGATAAGCATCATTGATCTTTTCCTAGAGCGGATAGGCCATATCATGCGTGAGTTCCTGC---------AGTTTTGGAGA-TTTCTCCATTTCCTCAGTGATGCGCGG-TCAAAGTGATCCCTGCATTTTATCCTTCACGTAGCTAAGGG-TATGCCTACTGC----TTCC---------TTCTCCGGGAGGAGAGTATT--GGTAGCACCTGCTCTTGCT
droKik1	scf7180000299506:2072-2311 -		CAGTGGCCG-----GTGATGGTTGCCGCTATCCTCCT-GATGTCCTTTTTGCTCTTGGAGATCAGTTCTGCGGTTCTCTTCCTATTGAATTCTGGCCAGCATAGTTTCGATCTTCTGT---------GCTCTGCCTTC-GTCGACCATTCCTTGCTGGCTAGTTGT-TTGAAATGGTCATGAATTTT-CGTCTGGACTGAGTTCAGGGAGATCTGTATGTCTGTTGTTG------------------CTGAGTGTTC---TTCTGACCCTTTTCTGGCC
droEle1	scf7180000490971:389118-389355 +		CAGTGATCT-----GTGAT---------AATCATATC-GCACTCGGTACGGTTGAGTCTTAGTAATTTCGTCGTTCTTTTCGATTCTATAATGGGCCATGTTTGGCGAGAAATGCAGCTAGCATGGCAGAATGTAAGA--TCTACTAAGACAGATTGGCTCGTCGT-TTATATGGGTTTTTTATATTTTGCTTACAGGTAGTCATCGA-TATACCAATGTT----TTCC---------TTATCCGGAAGGAGAGGTAT--AGTAGTGCCTGC-------
droRho1	scf7180000777568:24558-24803 +		CAGTGGCCT-----GTGAGTACTCGAATTAGCATGCTAGCACTCAGTGCGGCTGAAATTGAGTAGTTCTGATGTTTTCTTAT--GTTATTTCAGGCCATGTCTGGTGAGAGATTCGGC---------ATTGCGGTGTGTTTTTGCCAATAAGTGTTGGCTAATTTGACTGAAGTGGTTTTTAATAATTAGCTTACAAGTAGCCATCGG-CATGCCGACATT----CTCT----------TTCCTGGAAGGAGAGGTAT--GGTGGTGCCTTGCCTGGCT
droBia1	scf7180000302288:162152-162391 -		CAGTGGTCT-----GTAAGAGCTCGAACTAGACTACC-ACACTCTGTGCGGCTGAGTTCGAGTAGTTCCAAAGTTTTTTACT-GTTAAGCTCAGGCCGTGTCTGGTGAGAGATATGGC---------ACTGTAGTG--------------AGTGTTGGCTAATTTG-TTAAAATAGTTTCTGGTATTCAGCTTGCAAGTGGC-AAAGG-CATGCCGATATT----CTTCCCGGATATTCTTCCCGGAAGGAGAGGCAT--GATGGTGCCCTGCCTGTCT
droTak1	scf7180000410438:6234-6479 +		CAGTGGCCT-----GTAAGTACTCGAATTAGCATGCC-GCATTCCGTCCGGCTGAAATTAAGTAGTTCCGAAGTTTTCTTATTGTTTATTGCAGGCCAAGTCTGGTGAGAGATTCGGC---------ACTGTGGTGTG-TTTTGCCAATGAGTGTTGGCTAAAATG-CTGAATTGATTTCTGATAATTAGCTTGCACGTAGCCATGGG-CATGCCAACACT----CTCC---------TTTCCTGGAAGGAGAGGCAT--GGTGGTGCCTTGCCTGGCT
droSim2	node_63373:1-235 +		GA----------------TGACTCTCATAGCAGTGCT-GAGGTTTGCTCTGGTCAATCTTAAAAGTTTTGACGTTCTCTTTAAGCTTATTTTTGGCCATATTTGGCGTGTTAGGCGAC---------AGTGTGTGGTG-TTTTCCCATATTGTCTGTTTGTTACGG-TTTAGGTTTTCCCTAAGTAGTAGTTTACAAGTGGCTAAAGG-CATACTCATGCC----CTCC---------ATCTCTTGTATGAGTGGCGC--GGTAGTGCCTTCTCGAGCT
droYak3	v2_chr2h_random_005:397931-398176 +		CAATGCCCT-----GTGATGACTCTCATTGCAGTGCT-GAGGTTTGCTCTGGTCAATGTTAAAAGTTTTGACGTTCTCTTTGAGTTTATTTTTGGCCATATTTGGCGTGTTAGGCGAC---------AGTGTGTGGTG-TTTTCCCATATTGTCTGTTTGTTACGG-TTTAGGTTTTCCCTACGTAGTAGTTTACAAGTGGCTAAAGG-CATACTCATGCC----CTCC---------ATCTCTTGTATGAGTGGCGC--GGTAGTGCCTTCTCGAGCT
dp5	Unknown_group_178:13081-13326 -		CAGTGTCCC-----GTAATGGCTCGAGTAACTGCAGA-GCACTGTGCTCTGCTGAGTCTATACAGCTCGGCTGAGCGCTTCTTCGATCGATATGGCCATATCAATCTTGAGATTTTAC---------AGGACACGGTT-TGCTGCCATCTCCTATTGGCATTTTGG-TCGAACAATTCGTGCGTGAGGAGCCTGCACGTAGCCAAGGG-CATCGCTACCTG----CTCC---------CTCTCCGATAGGAGAGGGAT--CGTAGTACCATGCCTGGCT
droPer2	scaffold_811:1683-1928 -		CAGTGTCCC-----GTAATGGCTCTAGTAACTGCAGA-GCACTGTGCTCTGCTGAGTTTATACAGCTCTGCTGAGCGCTTCTTCGATCGATATGGCCATATCAATCTTGAGACTTTAC---------AGGAAACGGTT-TGCTGCCATCTCCTATTGGCATTTTGC-TCGAACAATTCGTGCGTTTGGAGCCTGCACGTAGCCAAGGG-CATCGCTACTTG----CTCC---------CTCTCCGATAGGAGAGGAAT--CGTAGTACCCTGCCTGGCT
droGri2	scaffold_15126:3205095-3205342 -		CAGTGCCCA-----GTTGGAGCCCGGATCACTGCAGA-ACAGTTGGTCCGACTTAAACTGCACAGCTCTTTGCTGCGCTTGGAGTTGATAATTGGCCATGTCTGGTGTGCTATCCGGG---------CACAGGTGGCA-CTCTGCCATTTTCTGCATGACCTGCGC-CTGTACTCCTTCTTGATGTTGAGCTTACAGGTAGCTAGAGG-CATACTTATACC----TTCC---------TTGTCCGCGAGGAGTGGTAGTAGATAGTACCTTTCCTAGCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droAna3

CAGTGCCCCCAATCGCGATTGCCCCAATCGCTAGGCT-GCATTCCGGTCTGGTGAGAGCAATAAGTCTCGCCGATCTTTTCTGAGAGCGTGTCGGCCAGATCAGACGTGATGTTCTAC---------AGGTCTGGAGA-TTACTCCATTTCCTATTGGCTGCCAGG-TCGAAAAACTCCCTGCACTTTAGCCTGCAAGTAGCCAAGGG-TATGCCTACAAG----TTCT---------TTCTCCGGTAGGAGAGTGTT--GGTAGTCCCTGCCCTAGCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................TCCCTGCACTTTAGCCTGCAAGTAGC.............................................................................	26	20	11.90	238	0	238	0	0	0	0
...................................................................................................................TAC---------AGGTCTGGAGA-TTACTCCATTTCC...............................................................................................................................	27	20	6.35	127	0	127	0	0	0	0
..................................................................................................................CTAC---------AGGTCTGGAGA-TTACTCCATTTCC...............................................................................................................................	28	20	4.00	80	0	80	0	0	0	0
...............................................................................TCTGAGAGCGTGTCGGCCAGATCAGAC.............................................................................................................................................................................	27	20	1.90	38	17	21	0	0	0	0
.....................................................................................................................................................TCCTATTGGCTGCCAGG-TCGAAAAAC.......................................................................................................	26	20	1.70	34	34	0	0	0	0	0
...................................................................................................................TAC---------AGGTCTGGAGA-TTACTCCATTTC................................................................................................................................	26	20	1.65	33	0	33	0	0	0	0
...................TGCCCCAATCGCTAGGCT-GCATTCCGG........................................................................................................................................................................................................................................	27	20	1.40	28	28	0	0	0	0	0
.................................................................................................................TCTAC---------AGGTCTGGAGA-TTACTCCATT..................................................................................................................................	26	20	1.05	21	18	3	0	0	0	0
........................CAATCGCTAGGCT-GCATTCCGGTC......................................................................................................................................................................................................................................	24	20	0.85	17	0	17	0	0	0	0
......................................................................................................................................................................................CACTTTAGCCTGCAAGTAGCCAAGGG-......................................................................	26	20	0.80	16	0	16	0	0	0	0
........................................................................................................................................................TATTGGCTGCCAGG-TCGAAAAACTC.....................................................................................................	25	20	0.80	16	0	16	0	0	0	0
..............................................................................................................TGTTCTAC---------AGGTCTGGAGA-TTACTCCAT...................................................................................................................................	28	20	0.75	15	15	0	0	0	0	0
...................TGCCCCAATCGCTAGGCT-GCATTCCGGT.......................................................................................................................................................................................................................................	28	20	0.55	11	11	0	0	0	0	0
......................................................................................................................................................................................CACTTTAGCCTGCAAGTAGCCAAG.........................................................................	24	20	0.50	10	0	9	0	0	0	1
..............................................................................................................TGTTCTAC---------AGGTCTGGAGA-TTACTC......................................................................................................................................	25	20	0.45	9	9	0	0	0	0	0
......................................................................................................................................................................................................................CTACAAG----TTCT---------TTCTCCGGTAGGAGA..........................	26	20	0.40	8	0	7	0	0	0	1
........................CAATCGCTAGGCT-GCATTCCGGTCT.....................................................................................................................................................................................................................................	25	20	0.30	6	0	6	0	0	0	0
...........................................................................................TCGGCCAGATCAGACGTGATGTTC....................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0	0
.................................................................................TGAGAGCGTGTCGGCCAGATCAGAC.............................................................................................................................................................................	25	20	0.25	5	2	3	0	0	0	0
............................................................................................................................................TACTCCATTTCCTATTGGCTGCCAGG-TC..............................................................................................................	28	20	0.25	5	5	0	0	0	0	0
......................................................................................................................................................................................................TAGCCAAGGG-TATGCCTACAAG----TTCT---------.........................................	26	20	0.25	5	0	5	0	0	0	0
.................................GGCT-GCATTCCGGTCTGGTGAGAGC............................................................................................................................................................................................................................	25	13	0.23	3	0	0	0	0	0	3
...................TGCCCCAATCGCTAGGCT-GCATTCC..........................................................................................................................................................................................................................................	25	20	0.20	4	0	4	0	0	0	0
.....................................................................................................................................................................................GCACTTTAGCCTGCAAGTAGCCAAGGG-......................................................................	27	20	0.20	4	3	1	0	0	0	0
...........................................................................................................................................................TGGCTGCCAGG-TCGAAAAACTCCCT..................................................................................................	25	20	0.20	4	4	0	0	0	0	0
....................................................TGAGAGCAATAAGTCTCGCCGATCTTT........................................................................................................................................................................................................	27	20	0.20	4	4	0	0	0	0	0
........................................................................GATCTTTTCTGAGAGCGTGTCGGCCA.....................................................................................................................................................................................	26	20	0.20	4	4	0	0	0	0	0
.........................................TTCCGGTCTGGTGAGAGCAATAAGTC....................................................................................................................................................................................................................	26	12	0.17	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................TACAAG----TTCT---------TTCTCCGGTAGGAGAGT........................	27	13	0.15	2	1	0	1	0	0	0
....................................................................................................................................................................................TGCACTTTAGCCTGCAAGTAGCCAAG.........................................................................	26	20	0.15	3	0	0	3	0	0	0
......................................................................................................................................................................................CACTTTAGCCTGCAAGTAGCCC...........................................................................	22	20	0.15	3	0	3	0	0	0	0
...........................................................................................................TGATGTTCTAC---------AGGTCTGGAGA-TTAC........................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0
.......................CCAATCGCTAGGCT-GCATTCCGGTC......................................................................................................................................................................................................................................	25	20	0.15	3	3	0	0	0	0	0
...................TGCCCCAATCGCTAGGCT-GC...............................................................................................................................................................................................................................................	20	20	0.15	3	3	0	0	0	0	0
.........................................................................................................................................................ATTGGCTGCCAGG-TCGAAAAACTCC....................................................................................................	25	20	0.15	3	3	0	0	0	0	0
........................................................................................................................................................................CGAAAAACTCCCTGCACTTTAGCCTG.....................................................................................	26	20	0.15	3	3	0	0	0	0	0
....................................................................................................................................................TTCCTATTGGCTGCCAGG-TCGAAAAA........................................................................................................	26	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................................................................................TAGCCAAGGG-TATGCCTACAAG----TTC...................................................	25	20	0.15	3	0	3	0	0	0	0
...............................................................................TCTGAGAGCGTGTCGGCCAGATCAGACG............................................................................................................................................................................	28	20	0.15	3	0	3	0	0	0	0
...........................................................................................................................................TTACTCCATTTCCTATTGGCTGCCAGG-................................................................................................................	27	20	0.15	3	3	0	0	0	0	0
...................................................................................................................................................................................................................TGCCTACAAG----TTCT---------TTCTCCGGT................................	23	20	0.15	3	3	0	0	0	0	0
.........................................................................................................................................................................................TTTAGCCTGCAAGTAGCCAAGGG-TA....................................................................	25	20	0.15	3	3	0	0	0	0	0
........................CAATCGCTAGGCT-GCATTCCG.........................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
................................................................................CTGAGAGCGTGTCGGCCAGATC.................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
...............................................................................................................................................TCCATTTCCTATTGGCTGCCAGG-TCGAAA..........................................................................................................	29	20	0.10	2	0	2	0	0	0	0
...........................................................................................................TGATGTTCTAC---------AGGTCTGGAGA-TTACT.......................................................................................................................................	27	20	0.10	2	0	1	1	0	0	0
...................................................................................................................TAC---------AGGTCTGGAGA-TTACTCCAT...................................................................................................................................	23	20	0.10	2	0	0	2	0	0	0
...................TGCCCCAATCGCTAGGCT-GCATTC...........................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0
.......................CCAATCGCTAGGCT-GCATTCCGG........................................................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
...........................................................................................................TGATGTTCTAC---------AGGTCTGGAGA-TTA.........................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................CCTGCACTTTAGCCTGCAAGTAGC.............................................................................	24	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................................................................................TTAGCCTGCAAGTAGCCAAGG........................................................................	21	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................................................................................ACTTTAGCCTGCAAGTAGCCAAGG........................................................................	24	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................TACAAG----TTCT---------TTCTCCGGTAGGAGAG.........................	26	20	0.10	2	0	0	2	0	0	0
....................................................................................................................................................TTCCTATTGGCTGCCAGG-TCGAAAA.........................................................................................................	25	20	0.10	2	1	1	0	0	0	0
........................................................................................................................................................TATTGGCTGCCAGG-TCGAAAAACT......................................................................................................	24	20	0.10	2	2	0	0	0	0	0
...............................................TCTGGTGAGAGCAATAAGTCTCGC................................................................................................................................................................................................................	24	20	0.10	2	0	0	2	0	0	0
...................................................................................................................................................................................................................TGCCTACAAG----TTCT---------TTCTCCGGTA...............................	24	20	0.10	2	2	0	0	0	0	0
......................CCCAATCGCTAGGCT-GCATTCCGG........................................................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
....................................................TGAGAGCAATAAGTCTCGCCGATCTT.........................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
.....................................................GAGAGCAATAAGTCTCGCCGATCTTT........................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
.........................AATCGCTAGGCT-GCATTCCGGTCTGG...................................................................................................................................................................................................................................	26	12	0.08	1	1	0	0	0	0	0
........................CAATCGCTAGGCT-GCATTCCGGTCTGGT..................................................................................................................................................................................................................................	28	12	0.08	1	1	0	0	0	0	0
........................................................................................................................................................................................................................ACAAG----TTCT---------TTCTCCGGTAGGAGAGTG.......................	27	12	0.08	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................TTCTCCGGTAGGAGAGTGTT--GGTAGTCCC..........	29	12	0.08	1	1	0	0	0	0	0
..........................................TCCGGTCTGGTGAGAGCAATAAGTCTC..................................................................................................................................................................................................................	27	12	0.08	1	1	0	0	0	0	0
......................................GCATTCCGGTCTGGTGAGAGCAATAA.......................................................................................................................................................................................................................	26	13	0.08	1	1	0	0	0	0	0
...............................TAGGCT-GCATTCCGGTCTGGTGAGAGCA...........................................................................................................................................................................................................................	28	13	0.08	1	1	0	0	0	0	0
...............................TAGGCT-GCATTCCGGTCTGGTGAG...............................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0
.........................................TTCCGGTCTGGTGAGAGCAATA........................................................................................................................................................................................................................	22	13	0.08	1	1	0	0	0	0	0
...............................TAGGCT-GCATTCCGGTCTGGTGAGAGC............................................................................................................................................................................................................................	27	13	0.08	1	1	0	0	0	0	0
.................................GGCT-GCATTCCGGTCTGGTGAG...............................................................................................................................................................................................................................	22	13	0.08	1	1	0	0	0	0	0
......................................................................................................................................................................................................................CTACAAG----TTCT---------TTCTCCGGTAGGAGAGT........................	28	13	0.08	1	0	0	0	0	1	0
..................................GCT-GCATTCCGGTCTGGTGAGAGC............................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	0	0	1
............................................CGGTCTGGTGAGAGCAATAAGTCTCGC................................................................................................................................................................................................................	27	13	0.08	1	1	0	0	0	0	0
...........................TCGCTAGGCT-GCATTCCGGTCTG....................................................................................................................................................................................................................................	23	14	0.07	1	1	0	0	0	0	0
..........................ATCGCTAGGCT-GCATTCCGGTCTGG...................................................................................................................................................................................................................................	25	14	0.07	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................TACAAG----TTCT---------TTCTCCGGTAGGAGAGTT.......................	28	14	0.07	1	0	0	0	0	0	1
......................................................................................................................................................................................CACTTTAGCCTGCAAGTAGCCA...........................................................................	22	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................TTTCCTATTGGCTGCCAGG-TCGAAAAAC.......................................................................................................	28	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................................TGCAAGTAGCCAAGGG-TATGCCTACAAG----......................................................	28	20	0.05	1	0	1	0	0	0	0
.............................................................................................................ATGTTCTAC---------AGGTCTGGAGA-TTACT.......................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................CCCTGCACTTTAGCCTGCAAGTAGCCC...........................................................................	27	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................TGCACTTTAGCCTGCAAGTAGCCAAGGG-T.....................................................................	29	20	0.05	1	0	1	0	0	0	0
.....................................................................................AGCGTGTCGGCCAGATCAGACGTGATG.......................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
............................................................................TTTTCTGAGAGCGTGTCGGC.......................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...................................................................................................................TAC---------AGGTCTGGAGA-TTACTCC.....................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
..................................................................................GAGAGCGTGTCGGCCAGATCAG...............................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................TCCATTTCCTATTGGCTGCCAGG-TCG.............................................................................................................	26	20	0.05	1	0	1	0	0	0	0
............................................................................................................GATGTTCTAC---------AGGTCTGGAGA-TTACT.......................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................CTTTAGCCTGCAAGTAGCCAAGGG-TA....................................................................	26	20	0.05	1	1	0	0	0	0	0
................................................................................CTGAGAGCGTGTCGGCCA.....................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
..................................................................................................................CTAC---------AGGTCTGGAGA-TTACTCCA....................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................AAAAACTCCCTGCACTTTAGC........................................................................................	21	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................AAAACTCCCTGCACTTTAGCCTGCA...................................................................................	25	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................TTAGCCTGCAAGTAGCCAAG.........................................................................	20	20	0.05	1	0	0	1	0	0	0
..........................................................................TCTTTTCTGAGAGCGTGTCGGCCAG....................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
.....................................................................................................................................................TCCTATTGGCTGCCAGG-TCGAAAA.........................................................................................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................CGAAAAACTCCCTGCACTTTAGCCTGC....................................................................................	27	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................GCCTGCAAGTAGCCAAGGG-TATGC.................................................................	24	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................TGGCTGCCAGG-TCGAAAAACTCCCTGCAC..............................................................................................	29	20	0.05	1	1	0	0	0	0	0
..............................................................................TTCTGAGAGCGTGTCGGCCAGATCAG...............................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...........................................................................................TCGGCCAGATCAGACGTGATGT......................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................AAACTCCCTGCACTTTAGCCTGCAAG.................................................................................	26	20	0.05	1	1	0	0	0	0	0
................................................................................................................TTCTAC---------AGGTCTGGAGA-TTACTC......................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................CACTTTAGCCTGCAAGTAGCC............................................................................	21	20	0.05	1	1	0	0	0	0	0
...............................................................................TCTGAGAGCGTGTCGGCCAGATCAGACA............................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..............................................................................TTCTGAGAGCGTGTCGGCCAGATCAGA..............................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
....................GCCCCAATCGCTAGGCT-GCATTCCGG........................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
......................CCCAATCGCTAGGCT-GCATTCCGGTCT.....................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.....................CCCCAATCGCTAGGCT-GCATTCCGGTC......................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................CAAGGG-TATGCCTACAAG----TTCT---------.........................................	22	20	0.05	1	0	1	0	0	0	0
............................................................................TTTTCTGAGAGCGTGTCGGCCAGA...................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................TTTCCTATTGGCTGCCAGG-TCG.............................................................................................................	22	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................TGCACTTTAGCCTGCAAGTAGCCAAGGG-......................................................................	28	20	0.05	1	0	0	1	0	0	0
.................................................................................................................TCTAC---------AGGTCTGGAGA-TTACTCCATTTC................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
................GATTGCCCCAATCGCTAGG....................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................TGGAGA-TTACTCCATTTCCTATTGGCTG......................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................G-TCGAAAAACTCCCTGCACTTTA..........................................................................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................AAAAACTCCCTGCACTTTAGCCTGC....................................................................................	25	20	0.05	1	1	0	0	0	0	0
........................CAATCGCTAGGCT-GCATTCCGGT.......................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
............................................................................TTTTCTGAGAGCGTGTCGGCCA.....................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...............................................TCTGGTGAGAGCAATAAGTCT...................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
...........................................................................................................................................................................................................AAGGG-TATGCCTACAAG----TTCT---------TTCTC....................................	26	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................CATTTCCTATTGGCTGCCAGG-TCGA............................................................................................................	25	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................CAGG-TCGAAAAACTCCCTGCACTTTAGCC.......................................................................................	29	20	0.05	1	1	0	0	0	0	0
...........................................................................................................TGATGTTCTAC---------AGGTCTGGAGA-TTACA.......................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0
.........................................................GCAATAAGTCTCGCCGATCTTTT.......................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................CGAAAAACTCCCTGCACTTTAGCC.......................................................................................	24	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................CTACAAG----TTCT---------TTCTCCGGTAGGAG...........................	25	20	0.05	1	0	0	0	0	1	0
....................................................TGAGAGCAATAAGTCTCGCCGATCT..........................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.................................................................................................AGATCAGACGTGATGTTCTAC---------AGGTC...................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...........................................................................................................TGATGTTCTAC---------AGGTCTGGAGA-TT..........................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................TGCAAGTAGCCAAGGG-TATGC.................................................................	21	20	0.05	1	0	1	0	0	0	0
................GATTGCCCCAATCGCTAGGCT-GC...............................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................AAACTCCCTGCACTTTAGCCTGCAAGTA...............................................................................	28	20	0.05	1	1	0	0	0	0	0
..................................................................................................................CTAC---------AGGTCTGGAGA-TTACTCC.....................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................CTATTGGCTGCCAGG-TCGAAAAACTCCC...................................................................................................	28	20	0.05	1	1	0	0	0	0	0
....................GCCCCAATCGCTAGGCT-GCATTCCGGTC......................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.................................................................................................................TCTAC---------AGGTCTGGAGA-TTACTCCAT...................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................TTCCTATTGGCTGCCAGG-TCGAAAAACTC.....................................................................................................	29	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................AGG-TCGAAAAACTCCCTGCACTTTAGC........................................................................................	27	20	0.05	1	1	0	0	0	0	0
..............................................................................................................TGTTCTAC---------AGGTCTGGAGA-TTACTCCA....................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................CCCTGCACTTTAGCCTGCAAGTAGCC............................................................................	26	20	0.05	1	1	0	0	0	0	0
..............................................................................................................TGTTCTAC---------AGGTCTGGAGA-TTACT.......................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................ATTTCCTATTGGCTGCCAGG-TCGA............................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..................................................................................................................CTAC---------AGGTCTGGAGA-TTACTC......................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................TTTCCTATTGGCTGCCAGG-TCGAA...........................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..............................................................................................GCCAGATCAGACGTGATGTTCTAC---------AGG.....................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................CTTTAGCCTGCAAGTAGCCAAGG........................................................................	23	20	0.05	1	0	1	0	0	0	0
...................TGCCCCAATCGCTAGGCT-GCATTCCGGC.......................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
...........................................................................................................TGATGTTCTAC---------AGGTCTGGAGA-T...........................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.............................................................................................................ATGTTCTAC---------AGGTCTGGAGA-TTACTCC.....................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
..............................................................................................................TGTTCTAC---------AGGTCTGGAGA-TTA.........................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0

droBip1

CAGTGTCCC-----GTGATGGCCTTGACCGCCAGACT-GCAGTCCTACCTATTGAGGGCGATAAGCATCATTGATCTTTTCCTAGAGCGGATAGGCCATATCATGCGTGAGTTCCTGC---------AGTTTTGGAGA-TTTCTCCATTTCCTCAGTGATGCGCGG-TCAAAGTGATCCCTGCATTTTATCCTTCACGTAGCTAAGGG-TATGCCTACTGC----TTCC---------TTCTCCGGGAGGAGAGTATT--GGTAGCACCTGCTCTTGCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGTGGCCG-----GTGATGGTTGCCGCTATCCTCCT-GATGTCCTTTTTGCTCTTGGAGATCAGTTCTGCGGTTCTCTTCCTATTGAATTCTGGCCAGCATAGTTTCGATCTTCTGT---------GCTCTGCCTTC-GTCGACCATTCCTTGCTGGCTAGTTGT-TTGAAATGGTCATGAATTTT-CGTCTGGACTGAGTTCAGGGAGATCTGTATGTCTGTTGTTG------------------CTGAGTGTTC---TTCTGACCCTTTTCTGGCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGTGATCT-----GTGAT---------AATCATATC-GCACTCGGTACGGTTGAGTCTTAGTAATTTCGTCGTTCTTTTCGATTCTATAATGGGCCATGTTTGGCGAGAAATGCAGCTAGCATGGCAGAATGTAAGA--TCTACTAAGACAGATTGGCTCGTCGT-TTATATGGGTTTTTTATATTTTGCTTACAGGTAGTCATCGA-TATACCAATGTT----TTCC---------TTATCCGGAAGGAGAGGTAT--AGTAGTGCCTGC-------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAGTGGCCT-----GTGAGTACTCGAATTAGCATGCTAGCACTCAGTGCGGCTGAAATTGAGTAGTTCTGATGTTTTCTTAT--GTTATTTCAGGCCATGTCTGGTGAGAGATTCGGC---------ATTGCGGTGTGTTTTTGCCAATAAGTGTTGGCTAATTTGACTGAAGTGGTTTTTAATAATTAGCTTACAAGTAGCCATCGG-CATGCCGACATT----CTCT----------TTCCTGGAAGGAGAGGTAT--GGTGGTGCCTTGCCTGGCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGTGGTCT-----GTAAGAGCTCGAACTAGACTACC-ACACTCTGTGCGGCTGAGTTCGAGTAGTTCCAAAGTTTTTTACT-GTTAAGCTCAGGCCGTGTCTGGTGAGAGATATGGC---------ACTGTAGTG--------------AGTGTTGGCTAATTTG-TTAAAATAGTTTCTGGTATTCAGCTTGCAAGTGGC-AAAGG-CATGCCGATATT----CTTCCCGGATATTCTTCCCGGAAGGAGAGGCAT--GATGGTGCCCTGCCTGTCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAGTGGCCT-----GTAAGTACTCGAATTAGCATGCC-GCATTCCGTCCGGCTGAAATTAAGTAGTTCCGAAGTTTTCTTATTGTTTATTGCAGGCCAAGTCTGGTGAGAGATTCGGC---------ACTGTGGTGTG-TTTTGCCAATGAGTGTTGGCTAAAATG-CTGAATTGATTTCTGATAATTAGCTTGCACGTAGCCATGGG-CATGCCAACACT----CTCC---------TTTCCTGGAAGGAGAGGCAT--GGTGGTGCCTTGCCTGGCT	Size	Hit Count	Total Norm	Total
No Reads

droSim2

GA----------------TGACTCTCATAGCAGTGCT-GAGGTTTGCTCTGGTCAATCTTAAAAGTTTTGACGTTCTCTTTAAGCTTATTTTTGGCCATATTTGGCGTGTTAGGCGAC---------AGTGTGTGGTG-TTTTCCCATATTGTCTGTTTGTTACGG-TTTAGGTTTTCCCTAAGTAGTAGTTTACAAGTGGCTAAAGG-CATACTCATGCC----CTCC---------ATCTCTTGTATGAGTGGCGC--GGTAGTGCCTTCTCGAGCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................TCCCATATTGTCTGG..........................................................................................................................	15	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................TCCCATATTGTCTGGA.........................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droYak3

CAATGCCCT-----GTGATGACTCTCATTGCAGTGCT-GAGGTTTGCTCTGGTCAATGTTAAAAGTTTTGACGTTCTCTTTGAGTTTATTTTTGGCCATATTTGGCGTGTTAGGCGAC---------AGTGTGTGGTG-TTTTCCCATATTGTCTGTTTGTTACGG-TTTAGGTTTTCCCTACGTAGTAGTTTACAAGTGGCTAAAGG-CATACTCATGCC----CTCC---------ATCTCTTGTATGAGTGGCGC--GGTAGTGCCTTCTCGAGCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................TCC---------ATCTCTTGTATGAGTGGCGC--GG.................	25	20	1.80	36	0	18	0	5	0	0	1	0	0	0	12
...................................................................................................................................................TATTGTCTGTTTGTTACGG-TTTAGG..........................................................................................................	25	20	0.80	16	0	7	1	0	0	0	0	0	0	0	8
........................................................................................................................................................................................TAGTAGTTTACAAGTGGCTAAAGG-CA....................................................................	26	20	0.65	13	0	12	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................TACAAGTGGCTAAAGG-CATACTCA..............................................................	24	20	0.45	9	0	9	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TCCCATATTGTCTGTTTGTTACGG-TT..............................................................................................................	26	20	0.40	8	0	0	1	0	0	0	0	0	0	0	7
................................................................................................................................................................................................TACAAGTGGCTAAAGG-CATACTCATG............................................................	26	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
.................................................................TTTTGACGTTCTCTTTGAGTT.................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................TACAAGTGGCTAAAGG-CATACTCATGC...........................................................	27	20	0.25	5	0	4	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAGTAGTTTACAAGTGGCTAAAGG-C.....................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.......................................................................................................GGCGTGTTAGGCGAC---------AGTGTGTGGT..............................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4
.........................................................................................................................................................................................................................TGCC----CTCC---------ATCTCTTGTATGAGTGGCGC--GGT................	31	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
.................................................................................................................................................................................................................................................TCTTGTATGAGTGGCGC--GGTAGTGC...........	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..........................................................................................TTTGGCCATATTTGGCGTGTTAGGC....................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TCTCTTGTATGAGTGGCGC--GGTAGTG............	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATTGTCTGTTTGTTACGG-TTTAGGT.........................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TACAAGTGGCTAAAGG-CATACTCATGCC----C.....................................................	29	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
......................................................................................................TGGCGTGTTAGGCGAC---------AGTGTGTGG...............................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................AC---------AGTGTGTGGTG-TTTTCCCATATT................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGCC----CTCC---------ATCTCTTGTATGAGTGG........................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TACTCATGCC----CTCC---------ATCTCTTGTATGA............................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATTGTCTGTTTGTTACGG-TTTAGG..........................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAGTTTACAAGTGGCTAAAGG-CATA..................................................................	25	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................TATTGTCTGTTTGTTA....................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
..............................................................................................................................................TCCCATATTGTCTGTTTGTTACGG-T...............................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
........................TCATTGCAGTGCT-GAGGTTTGCTCT.....................................................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
........................TCATTGCAGTGCT-GAGGTTTGCT.......................................................................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0
........................TCATTGCAGTGCT-GAGGTTTGCTCTGG...................................................................................................................................................................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................TGGCCATATTTGGCGTGTTAGGCGA..................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
........................TCATTGCAGTGCT-GAGGTTTGCTC......................................................................................................................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................TGGCCATATTTGGCGTGTTAGGCGAC---------........................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...TGCCCT-----GTGATGACTCTCATTGCAGTGC...................................................................................................................................................................................................................................................	28	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................TGTTAGGCGAC---------AGTGTGTGGTG-T...........................................................................................................................................	23	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
......................TCTCATTGCAGTGCT-GAGGTTTGC........................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................TCATTGCAGTGCT-GAGGTTTGC........................................................................................................................................................................................................................................	22	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...................GACTCTCATTGCAGTGCT-GAGGT............................................................................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................TTTTTGGCCATATTTGGCGTGTTAGGC....................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................TGTGTGGTG-TTTTCCCATATTGTCTG...........................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TCTTGTATGAGTGGCGC--GGTAGTGCC..........	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................TGGCGTGTTAGGCGAC---------AGTGTGTGGT..............................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................TGGCGTGTTAGGCGAC---------AGTGTGTGGTG-............................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TCTCTTGTATGAGTGGCGC--GGTAGTGC...........	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATGAGTGGCGC--GGTAGTGCCTT........	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CC---------ATCTCTTGTATGAGTGGCGC--GG.................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................TTTGGCCATATTTGGCGTGTTAGGCGAC---------........................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGTTTGTTACGG-TTTAGGTTTTCCC...................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................TGGCCATATTTGGCGTGTTAGGCGAC---------AG......................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................GTTAGGCGAC---------AGTGTGTGGTG-TTT.........................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TACAAGTGGCTAAAGG-CATACT................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CC----CTCC---------ATCTCTTGTATGAGTGGCGC--...................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAGTAGTTTACAAGTGGCTAAAGG-......................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTAGTAGTTTACAAGTGGCTAAAG........................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CTTGTATGAGTGGCGC--GGTAGTGC...........	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................TTGGCCATATTTGGCGTGTTAGGCGAC---------A.......................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................TGTTAGGCGAC---------AGTGTGTGGTG-TT..........................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGTGGTG-TTTTCCCATATTGTCTG...........................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ATCTCTTGTATGAGTGGCGC--GGTAGT.............	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................TGGCCATATTTGGCGTGTTAGGC....................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGGCTAAAGG-CATACTCATGCC----CT....................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TACAAGTGGCTAAAGG-CATACTCAG.............................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GTAGTTTACAAGTGGCTAAAGG-CA....................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTAGTAGTTTACAAGTGGCTAAAGG-C.....................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................CGTGTTAGGCGAC---------AGTGTGTGG...............................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................TATTGTCTGTTTGTTACGG-TTTAGGTT........................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATACTCATGCC----CTCC---------ATCTCT...................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GCC----CTCC---------ATCTCTTGTATGAGTGGC.......................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ACTCATGCC----CTCC---------ATCTCTTGTATG.............................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TCTTGTATGAGTGGCGC--GGTAG..............	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATGAGTGGCGC--GGTAGTGCCTTCT......	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TCC---------ATCTCTTGTATGAGTGGCGC--GGTA...............	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................TATTTGGCGTGTTAGGCGAC---------AGTGTG..................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................TTGGCGTGTTAGGCGAC---------AGTGTGTGG...............................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................GCGTGTTAGGCGAC---------AGTGTGTGGT..............................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
................................................................................................CATATTTGGCGTGTTAGGCGAC---------AGT.....................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................TG-TTTTCCCATATTGTCTGTTTGTT.....................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATTGTCTGTTTGTTACGG-TTTAGGT.........................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

dp5

CAGTGTCCC-----GTAATGGCTCGAGTAACTGCAGA-GCACTGTGCTCTGCTGAGTCTATACAGCTCGGCTGAGCGCTTCTTCGATCGATATGGCCATATCAATCTTGAGATTTTAC---------AGGACACGGTT-TGCTGCCATCTCCTATTGGCATTTTGG-TCGAACAATTCGTGCGTGAGGAGCCTGCACGTAGCCAAGGG-CATCGCTACCTG----CTCC---------CTCTCCGATAGGAGAGGGAT--CGTAGTACCATGCCTGGCT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............TAATGGCTCGAGTAACTGCAGA-GCAC.............................................................................................................................................................................................................................................	26	20	25.85	517	0	517	0	0	0	0	0	0	0	0
...............TAATGGCTCGAGTAACTGCAGA-GCA..............................................................................................................................................................................................................................................	25	20	20.10	402	0	402	0	0	0	0	0	0	0	0
..................TGGCTCGAGTAACTGCAGA-GCACTG...........................................................................................................................................................................................................................................	25	20	3.90	78	0	77	1	0	0	0	0	0	0	0
................AATGGCTCGAGTAACTGCAGA-GCAC.............................................................................................................................................................................................................................................	25	20	2.55	51	0	51	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCACGTAGCCAAGGG-CATCGCTACC............................................................	26	7	2.00	14	0	6	2	0	0	0	3	0	3	0
...........................................................................................................................................................TGGCATTTTGG-TCGAACAATTCGTG..................................................................................................	25	2	2.00	4	0	0	0	1	0	0	0	3	0	0
..................................................................................TCGATCGATATGGCCATATCAA...............................................................................................................................................................................	22	20	1.75	35	0	35	0	0	0	0	0	0	0	0
...............................................TCTGCTGAGTCTATACAGCTCGGC................................................................................................................................................................................................................	24	14	1.64	23	0	23	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCACGTAGCCAAGGG-CATCGC................................................................	22	20	1.40	28	0	26	0	0	0	0	2	0	0	0
..................................................................................................................TTAC---------AGGACACGGTT-TGCTGCCATC..................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................TGAGTCTATACAGCTCGGCTGAG............................................................................................................................................................................................................	23	15	0.93	14	0	12	0	0	0	0	0	2	0	0
.....TCCC-----GTAATGGCTCGAGTAACTGCAGA-.................................................................................................................................................................................................................................................	27	20	0.90	18	0	18	0	0	0	0	0	0	0	0
...............TAATGGCTCGAGTAACTGCAG...................................................................................................................................................................................................................................................	21	20	0.85	17	0	17	0	0	0	0	0	0	0	0
..........................................TGTGCTCTGCTGAGTCTATACAGC.....................................................................................................................................................................................................................	24	20	0.75	15	0	14	1	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCACGTAGCCAAGGG-CATCGCTAC.............................................................	25	20	0.75	15	0	10	0	0	1	0	4	0	0	0
................................................................................................................................................................................................TGCACGTAGCCAAGGG-CATCGCTA..............................................................	24	20	0.75	15	0	15	0	0	0	0	0	0	0	0
........................GAGTAACTGCAGA-GCACTGTGC........................................................................................................................................................................................................................................	22	20	0.65	13	0	13	0	0	0	0	0	0	0	0
................AATGGCTCGAGTAACTGCAGA-GCACTG...........................................................................................................................................................................................................................................	27	20	0.65	13	0	13	0	0	0	0	0	0	0	0
...............................................TCTGCTGAGTCTATACAGCTCGG.................................................................................................................................................................................................................	23	14	0.64	9	0	9	0	0	0	0	0	0	0	0
....................................................TGAGTCTATACAGCTCGGCTGAGCGC.........................................................................................................................................................................................................	26	12	0.58	7	0	5	1	1	0	0	0	0	0	0
...............TAATGGCTCGAGTAACTGCAGA-GCACA............................................................................................................................................................................................................................................	27	20	0.55	11	0	11	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCACGTAGCCAAGGG-CATCGCT...............................................................	23	20	0.55	11	0	8	3	0	0	0	0	0	0	0
....................................................................................................................................ACGGTT-TGCTGCCATCTCCTATTGG.........................................................................................................................	25	20	0.50	10	0	8	0	0	0	0	0	2	0	0
..........................................................................................................................................................TTGGCATTTTGG-TCGAACAATTCG....................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................CGATCGATATGGCCATATCAATCT............................................................................................................................................................................	24	20	0.50	10	0	10	0	0	0	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACTGT..........................................................................................................................................................................................................................................	22	20	0.45	9	0	0	0	0	0	0	9	0	0	0
......................TCGAGTAACTGCAGA-GCACTGTG.........................................................................................................................................................................................................................................	23	20	0.45	9	0	0	9	0	0	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACTGTGCTT......................................................................................................................................................................................................................................	26	20	0.45	9	0	9	0	0	0	0	0	0	0	0
...........................TAACTGCAGA-GCACTGTGC........................................................................................................................................................................................................................................	19	20	0.45	9	0	8	0	0	0	0	0	1	0	0
....................................................TGAGTCTATACAGCTCGGCTGAGC...........................................................................................................................................................................................................	24	14	0.43	6	0	4	2	0	0	0	0	0	0	0
..........................................TGTGCTCTGCTGAGTCTATACAGCTC...................................................................................................................................................................................................................	26	20	0.35	7	0	7	0	0	0	0	0	0	0	0
.................ATGGCTCGAGTAACTGCAGA-GCAC.............................................................................................................................................................................................................................................	24	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.................................CAGA-GCACTGTGCTCTGCTGA................................................................................................................................................................................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GCACGTAGCCAAGGG-CATCG.................................................................	20	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GCACGTAGCCAAGGG-CATCGC................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GCCTGCACGTAGCCAAGGG-CA....................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CACGTAGCCAAGGG-CATCGCTACC............................................................	24	7	0.29	2	0	1	0	0	0	0	0	0	1	0
...............................................TCTGCTGAGTCTATACAGCTCGGCTG..............................................................................................................................................................................................................	26	14	0.29	4	0	3	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................TAGCCAAGGG-CATCGCTACCT...........................................................	21	7	0.29	2	0	1	0	0	0	0	1	0	0	0
........................................................................................................................................TT-TGCTGCCATCTCCTATTGG.........................................................................................................................	21	20	0.25	5	0	4	1	0	0	0	0	0	0	0
..................................................................................TCGATCGATATGGCCATATCAATA.............................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACTGTGAA.......................................................................................................................................................................................................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGAGGAGCCTGCACGTAGCCAAGGG-......................................................................	25	4	0.25	1	0	0	0	0	0	0	1	0	0	0
...............TAATGGCTCGAGTAACTGCAGA-A................................................................................................................................................................................................................................................	23	20	0.25	5	0	5	0	0	0	0	0	0	0	0
............................................TGCTCTGCTGAGTCTATACAGCTCG..................................................................................................................................................................................................................	25	13	0.23	3	0	2	0	0	1	0	0	0	0	0
...............................................TCTGCTGAGTCTATACAGCTCG..................................................................................................................................................................................................................	22	14	0.21	3	0	3	0	0	0	0	0	0	0	0
........................................................................GAGCGCTTCTTCGATCGATATGG........................................................................................................................................................................................	23	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACTGTGCAA......................................................................................................................................................................................................................................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACTGTA.........................................................................................................................................................................................................................................	23	20	0.20	4	0	4	0	0	0	0	0	0	0	0
........................................................................GAGCGCTTCTTCGATCGATATGGCC......................................................................................................................................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.................................................TGCTGAGTCTATACAGCTCGGCTGAGCGC.........................................................................................................................................................................................................	29	10	0.20	2	0	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................AACAATTCGTGCGTGAGGAGC........................................................................................	21	20	0.20	4	0	0	0	0	0	0	4	0	0	0
.....................CTCGAGTAACTGCAGA-GCACTGT..........................................................................................................................................................................................................................................	23	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.....TCCC-----GTAATGGCTCGAGTAACTGCA....................................................................................................................................................................................................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACTG...........................................................................................................................................................................................................................................	21	20	0.20	4	0	0	2	0	0	0	0	2	0	0
...............................................................................TCTTCGATCGATATGGCCATA...................................................................................................................................................................................	21	20	0.20	4	0	3	0	0	0	0	0	1	0	0
................................................................................CTTCGATCGATATGGCCATATCAA...............................................................................................................................................................................	24	20	0.20	4	0	2	0	0	0	0	0	0	2	0
................................................................................................................................................................................................................................................CTCCGATAGGAGAGGGAT--CGT................	21	6	0.17	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................TCCGATAGGAGAGGGAT--CGTAG..............	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................AGTCTATACAGCTCGGCTGAGCGCT........................................................................................................................................................................................................	25	13	0.15	2	0	1	1	0	0	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACTGTGCATC.....................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	3	0	0
..................................................................................TCGATCGATATGGCCATATCAATC.............................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0
....................................A-GCACTGTGCTCTGCTGAGTCTATAC........................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...........................................................................................................................................TGCTGCCATCTCCTATTGGC........................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................CTCGAGTAACTGCAGA-GCACTGTGC........................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...............TAATGGCTCGAGTAACTGCAGA-GC...............................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	3	0	0	0	0	0
................................................................................CTTCGATCGATATGGCCATATCAATC.............................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..................................................................................TCGATCGATATGGCCATATCAATCT............................................................................................................................................................................	25	20	0.15	3	0	0	3	0	0	0	0	0	0	0
...........................................................................................................................................TGCTGCCATCTCCTATTGG.........................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTCGTGCGTGAGGAGCCTGCAT..................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	3	0	0
......................................................................................................................................................................................................TAGCCAAGGG-CATCGCTACC............................................................	20	7	0.14	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................GCACGTAGCCAAGGG-CATCGCTACC............................................................	25	7	0.14	1	0	1	0	0	0	0	0	0	0	0
................................................CTGCTGAGTCTATACAGCTCGG.................................................................................................................................................................................................................	22	14	0.14	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GCCAAGGG-CATCGCTACCT...........................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TAGCCAAGGG-CATCGCTACCTG----CTC...................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................CAAGGG-CATCGCTACCTG----CT....................................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TAGCCAAGGG-CATCGCTACCTG----CT....................................................	24	7	0.14	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AGGG-CATCGCTACCTG----CTCC---------CTCTC....................................	25	8	0.13	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TAGGAGAGGGAT--CGTAGTAAA..........	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CGCTACCTG----CTCC---------CTCTCCGA.................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.....................................................GAGTCTATACAGCTCGGCTG..............................................................................................................................................................................................................	20	18	0.11	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TCGCTACCTG----CTCC---------CTCTCC...................................	20	19	0.11	2	0	1	0	1	0	0	0	0	0	0
..............................................................................TTCTTCGATCGATATGGCCATATCAA...............................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................TCGATCGATATGGCCATATCAATAA............................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCGAACAATTCGTGCGTGAGGAGCCTG.....................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................CAATTCGTGCGTGAGGAGCC.......................................................................................	20	20	0.10	2	0	0	0	0	0	1	1	0	0	0
.....................CTCGAGTAACTGCAGA-GCAC.............................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACTGTAA........................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..GTGTCCC-----GTAATGGCTCGAGTAACTGC.....................................................................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................GCTCGAGTAACTGCAGA-GCACTGTG.........................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................CGAGTAACTGCAGA-GCACTGTGCTCT.....................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...TGTCCC-----GTAATGGCTCGAGTAACT.......................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................TATCAATCTTGAGATTTTAC---------AG......................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	2	0	0
............................................................................................................................................................................................AGCCTGCACGTAGCCAAGGG-CA....................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................CGAGTAACTGCAGA-GCACTGTGA........................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATCGCTACCTG----CTCC---------CTCT.....................................	19	20	0.10	2	0	1	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................G-CATCGCTACCTG----CTCC---------CTCT.....................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................................................TGAGTCTATACAGCTCGGCTGAGCGCT........................................................................................................................................................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..........................................TGTGCTCTGCTGAGTCTATACAGCTCG..................................................................................................................................................................................................................	27	11	0.09	1	0	1	0	0	0	0	0	0	0	0
....................................................TGAGTCTATACAGCTCGGCTGAGCGCTT.......................................................................................................................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..........................................TGTGCTCTGCTGAGTCTATACAGCTCGG.................................................................................................................................................................................................................	28	11	0.09	1	0	1	0	0	0	0	0	0	0	0
...............................................TCTGCTGAGTCTATACAGCTCGGCTGAGC...........................................................................................................................................................................................................	29	12	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................TGAGTCTATACAGCTCGGCTGAGCGA.........................................................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0
....................................................TGAGTCTATACAGCTCGGCTGAGCG..........................................................................................................................................................................................................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0
........................................................TCTATACAGCTCGGCTGAGCGCTTC......................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................TGCTCTGCTGAGTCTATACAGCTCGGA................................................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.............................................GCTCTGCTGAGTCTATACAGCTCGG.................................................................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0
.............................................GCTCTGCTGAGTCTATACAGCTCGGC................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................................TGCTCTGCTGAGTCTATACAGCTCGGC................................................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0
...............................................TCTGCTGAGTCTATACAGCTCGGCTC..............................................................................................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..............................................CTCTGCTGAGTCTATACAGCTCGGC................................................................................................................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................CTGCTGAGTCTATACAGCTCGGC................................................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................GTCTATACAGCTCGGCTGAGCG..........................................................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0
................................................CTGCTGAGTCTATACAGCTCGTA................................................................................................................................................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................TCTGCTGAGTCTATACAGCTCGGCTT..............................................................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................................................TGAGTCTATACAGCTCGGCTG..............................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................AGTCTATACAGCTCGGCTGAGC...........................................................................................................................................................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0
.....................................................GAGTCTATACAGCTCGGCTGAG............................................................................................................................................................................................................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0
........................................................TCTATACAGCTCGGCTGAG............................................................................................................................................................................................................	19	17	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................AGTCTATACAGCTCGGCTGAGT...........................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................ATCGCTACCTG----CTCC---------CTCTCC...................................	21	18	0.06	1	0	0	0	1	0	0	0	0	0	0
.................ATGGCTCGAGTAACTGCAGA-GCACT............................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................GTGAGGAGCCTGCACGTAGC.............................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CCTGCACGTAGCCAAGGG-CATCGCTA..............................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................GGCTCGAGTAACTGCAGA-GCACTGTGC........................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................CGAACAATTCGTGCGTGAGG...........................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...TGTCCC-----GTAATGGCTCGAGTAACTGC.....................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACA............................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................CGGTT-TGCTGCCATCTCCTA.............................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CGTAGCCAAGGG-CATCGCTA..............................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................ACAATTCGTGCGTGAGGA..........................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................TGGCTCGAGTAACTGCAGA-C................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................TCGATCGATATGGCCATATCAAAA.............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................TTCTTCGATCGATATGGCCAT....................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................GCTTCTTCGATCGATATGGCC......................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................AACAATTCGTGCGTGAGGAGCCTG.....................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........C-----GTAATGGCTCGAGTAACTG......................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................CGGCTGAGCGCTTCTTCGAT................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TG----CTCC---------CTCTCCGATAGGA............................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CATCGCTACCTG----CTCC---------CTCTC....................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCACGTAGCCAAGGG-CAT...................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................TGCTCTGCTGAGTCTATACAGCTC...................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................A-GCACTGTGCTCTGCTGAGTCTATACA.......................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
................AATGGCTCGAGTAACTGCAGA-GCAA.............................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................CAGCTCGGCTGAGCGCTTCTT....................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.........................................................................AGCGCTTCTTCGATCGATATGGCCATATC.................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................GAGCCTGCACGTAGCCAAGGG-CATCG.................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0
........................................................................................GATATGGCCATATCAATCTTG..........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................ATATGGCCATATCAATCTTGAA........................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AATTCGTGCGTGAGGAGCC.......................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................TCGAACAATTCGTGCGTGAGGA..........................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCGAACAATTCGTGCGTGAGGAG.........................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...TGTCCC-----GTAATGGCTCGAGTAACTGCA....................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CAATCTTGAGATTTTAC---------AGGA....................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................TTCGATCGATATGGCCATATCAAT..............................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................ACGGTT-TGCTGCCATCTCC...............................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................GTT-TGCTGCCATCTCCTATT...........................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACTGTGCG.......................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................TGCTGCCATCTCCTATTGGA........................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCACGTAGCCAAGGG-CATCGCTACA............................................................	26	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................GAACAATTCGTGCGTGAGGAGCCTG.....................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................TAACTGCAGA-GCACTGTGCTCTGCTGT................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................CACTGTGCTCTGCTGAGTCTATACAGC.....................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................ACGTAGCCAAGGG-CATCGCTA..............................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................GGCCATATCAATCTTGAGATT.....................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................TAACTGCAGA-GCACTGTGAA.......................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............TAATGGCTCGAGTAACTGCAGA-GCACAA...........................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TGAGGAGCCTGCACGTAGCC............................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................AATTCGTGCGTGAGGAGC........................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............TAATGGCTCGAGTAACTGCAGA-GT...............................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................TCGAGTAACTGCAGA-GCACTGTAAA.......................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............TAATGGCTCGAGTAACTGCAGA-C................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CTGCACGTAGCCAAGGG-CATCG.................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................TCGATCGATATGGCCATATCAATT.............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCGAACAATTCGTGCGTGAGG...........................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................GATATGGCCATATCAATC.............................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATTCGTGCGTGAGGAGCCTGC....................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................TCGAGTAACTGCAGA-GCACTGTGCTTA.....................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................CAGCTCGGCTGAGCGCTTCTTC...................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................CCTGCACGTAGCCAAGGG-CAT...................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................CTTCGATCGATATGGCCATA...................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..........................................................TATACAGCTCGGCTGAGCG..........................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAGTGTCCC-----GTAATGGCTCTAGTAACTGCAGA-GCACTGTGCTCTGCTGAGTTTATACAGCTCTGCTGAGCGCTTCTTCGATCGATATGGCCATATCAATCTTGAGACTTTAC---------AGGAAACGGTT-TGCTGCCATCTCCTATTGGCATTTTGC-TCGAACAATTCGTGCGTTTGGAGCCTGCACGTAGCCAAGGG-CATCGCTACTTG----CTCC---------CTCTCCGATAGGAGAGGAAT--CGTAGTACCCTGCCTGGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................TAGGAGAGGAAT--CGTAGTACCCTGCC.....	26	20	1.20	24	24	0	0	0	0	0
..................................................................................................................TTAC---------AGGAAACGGTT-TGCTGCCAT...................................................................................................................................	24	20	0.65	13	0	0	10	0	0	3
..................................................................................................................................................................................................CACGTAGCCAAGGG-CATCGCTACT............................................................	24	20	0.60	12	0	12	0	0	0	0
......................................................................................................................................................................................................................................................TAGGAGAGGAAT--CGTAGTACCCTGC......	25	20	0.40	8	8	0	0	0	0	0
...................................................................................................................................................................TGC-TCGAACAATTCGTGCGTTTGAGC.........................................................................................	26	4	0.25	1	0	1	0	0	0	0
......................................................................................................................................................................................................TAGCCAAGGG-CATCGCTACTTG----CTCC---------C........................................	27	20	0.20	4	0	4	0	0	0	0
..................................................................................................................TTAC---------AGGAAACGGTT-TGCTGC......................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0
.................................................................................TTCGATCGATATGGCCATATCAAT..............................................................................................................................................................................	24	20	0.15	3	3	0	0	0	0	0
......................TCTAGTAACTGCAGA-GCACTGTGC........................................................................................................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0
.............................................................................................................................................................................................GCCTGCACGTAGCCAAGGG-CATCGC................................................................	25	20	0.15	3	0	3	0	0	0	0
.......................CTAGTAACTGCAGA-GCACTGTGCTC......................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
..............................................................................................................................................................................................CCTGCACGTAGCCAAGGG-CATCGCTA..............................................................	26	20	0.10	2	0	2	0	0	0	0
................................................................................................................................................................................................TGCACGTAGCCAAGGG-CATCGCTACT............................................................	26	20	0.10	2	0	0	2	0	0	0
..................................................................................................................TTAC---------AGGAAACGGTT-TGCTGCCATC..................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0
...................................................................................................................................................................TGC-TCGAACAATTCGTGC.................................................................................................	18	20	0.10	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................AT--CGTAGTACCCTGCCTGGC.	20	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................GATAGGAGAGGAAT--CGTAGTAC...........	22	20	0.10	2	0	2	0	0	0	0
.................................................................................................................TTTAC---------AGGAAACGGTT-TGCTA.......................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................TAGGAGAGGAAT--CGTAGTACCCG........	23	20	0.05	1	1	0	0	0	0	0
.................................................................................................................TTTAC---------AGGAAACGGTT-TGCTGCCATCT.................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
..........................................................TATACAGCTCTGCTGAGCGC.........................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.........................................................TTATACAGCTCTGCTGAGCGCTTCT.....................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................TGCACGTAGCCAAGGG-CATCGCTACTA...........................................................	27	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................CTGCACGTAGCCAAGGG-CATCG.................................................................	22	20	0.05	1	0	1	0	0	0	0
......................TCTAGTAACTGCAGA-GCACTGTGCTCCTT...................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	1
.......................CTAGTAACTGCAGA-GCACT............................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................GCACGTAGCCAAGGG-CATCGCTTT.............................................................	24	20	0.05	1	0	1	0	0	0	0
...........................TAACTGCAGA-GCACTGTGCTCTA....................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0
.......................................................................TGAGCGCTTCTTCGATCGATATG.........................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
..........................................................................................................TTGAGACTTTAC---------AGGAAACGGTT-TG..........................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
..........................................................TATACAGCTCTGCTGAGCGCTTCTTCG..................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1
..............................................................................TTCTTCGATCGATATGGCCA.....................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................ACGGTT-TGCTGCCATCTCC...............................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................GATAGGAGAGGAAT--CGTAGTACC..........	23	20	0.05	1	1	0	0	0	0	0

droGri2

CAGTGCCCA-----GTTGGAGCCCGGATCACTGCAGA-ACAGTTGGTCCGACTTAAACTGCACAGCTCTTTGCTGCGCTTGGAGTTGATAATTGGCCATGTCTGGTGTGCTATCCGGG---------CACAGGTGGCA-CTCTGCCATTTTCTGCATGACCTGCGC-CTGTACTCCTTCTTGATGTTGAGCTTACAGGTAGCTAGAGG-CATACTTATACC----TTCC---------TTGTCCGCGAGGAGTGGTAGTAGATAGTACCTTTCCTAGCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................................................................TACAGGTAGCTAGAGG-CATAC.................................................................	21	20	0.05	1	1	0

dan_3345

scaffold_13417:5344149-5344299 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.2	-16.9	-16.9