ID:

dan_3333

 Coordinate:

scaffold_13417:3555265-3555322 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.2

Flybase annnotation

CDS [Dana\GF20185-cds]; exon [dana_GLEANR_2588:1]; CDS [Dana\GF20185-cds]; exon [dana_GLEANR_2588:2]; intron [Dana\GF20185-in]

No Repeatable elements found

mature
  1. scaffold_1877:104-124 -
  2. scaffold_2034:267-287 -
  3. scaffold_8897:734-754 +
  4. scaffold_8937:1106-1126 +
  5. scaffold_12013:252-272 -
  6. scaffold_12902:221604-221624 +
  7. scaffold_12903:566596-566616 -
  8. scaffold_12903:573184-573204 -
  9. scaffold_12911:2042111-2042131 +
  10. scaffold_12966:238383-238403 +
  11. scaffold_13045:1316666-1316686 +
  12. scaffold_13099:1344536-1344556 -
  13. scaffold_13266:2802978-2802998 +
  14. scaffold_13266:2810257-2810277 +
  15. scaffold_13340:8602314-8602334 -
  16. scaffold_13340:8609589-8609609 -
  17. scaffold_13340:11099409-11099429 -
  18. scaffold_13340:11106721-11106741 -
  19. scaffold_13340:11180482-11180502 -
  20. dan_3333  scaffold_13417:3555301-3555321 -
star

Sense Strand Reads

---------------------------#######################----------------------------------------------------------##################################################
GTTGGCAGCCCAGCGACAGGGGGGATCATGTACGATCCAACGGGTATGATGTAGGTCCGAATGGCGGCGTGAAGCTTGCGTTCTTTCCCACGTGAACCGGCGACACAGGTATACGGGGCTGAGATTAAGAAAAGAAAGACAACAACGGTGCGAAGTGG
**************************************************...........((....(((.....((((((........))))))....)))...)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M058
embryo
 M044
female body
 V106
head
 V039
embryo
 V105
male body		 V055
head
.....................................................................................................................................GAAAGACAACAACGGTGCGAAGTGG 25 0 5 2.80 14 12 2 0 0 0 0
.....................................................................................................................................GAAAGACAACAACGGTGCGAAGT.. 23 0 5 0.80 4 1 3 0 0 0 0
.............................................................................................................................TAAGAAAAGAAAGACAACAACGGTGC....... 26 0 5 0.80 4 4 0 0 0 0 0
............................................TATGATGTAGGTCCGAATGGCGGC.......................................................................................... 24 0 3 0.67 2 2 0 0 0 0 0
.....................................................................................................................................GAAAGACAACAACGGTGCGAAGTG. 24 0 5 0.60 3 3 0 0 0 0 0
......................................................................................................................................AAAGACAACAACGGTGCGAAGTGG 24 0 5 0.40 2 1 1 0 0 0 0
...................................................................................................................................AAGAAAGACAACAACGGTGCGAAG... 24 0 5 0.40 2 1 1 0 0 0 0
............................................TATGATGTAGGTCCGAATGGCGTG.......................................................................................... 24 2 3 0.33 1 0 0 0 1 0 0
...............................................GGTGTAGGTCCGAATGGCGGCGT........................................................................................ 23 1 3 0.33 1 1 0 0 0 0 0
............................................TATGATGTAGGTCCGAATGGCGGCGT........................................................................................ 26 0 3 0.33 1 0 1 0 0 0 0
............................................TATGATGTAGGTCCGAATGGCGA........................................................................................... 23 1 3 0.33 1 1 0 0 0 0 0
............................................TATGATGTAGGTCCGAATGGCG............................................................................................ 22 0 3 0.33 1 0 0 0 1 0 0
............................................TATGATGTAGGTCCGAATGG.............................................................................................. 20 0 3 0.33 1 0 0 0 1 0 0
...................................................TAGGTCCGAATGGCGGCGTGA...................................................................................... 21 0 20 0.30 6 0 6 0 0 0 0
....GCAGCCCAGCGACAGGGGGGA..................................................................................................................................... 21 0 20 0.30 6 0 0 6 0 0 0
.......................................................TCCGAATGGCGGCGTGAAGCTTGC............................................................................... 24 0 19 0.21 4 1 0 0 3 0 0
....................................................................................................................................AGAAAGACAACAACGGTGCGAAG... 23 0 5 0.20 1 1 0 0 0 0 0
...........................................................................................................................ATTAAGAAAAGAAAGACAACAACGGTGC....... 28 0 5 0.20 1 1 0 0 0 0 0
............................................................ATGGCGGCGTGAAGCTTGC............................................................................... 19 0 20 0.20 4 0 0 3 0 1 0
...............................................................................................................................AGAAAAGAAAGACAACAACGGTGC....... 24 0 5 0.20 1 1 0 0 0 0 0
......................................................................................................................................AAAGACAACAACGGTGCGAAGTGT 24 1 5 0.20 1 1 0 0 0 0 0
.................................................................................................................................AAAAGATAGACAACAACGG.......... 19 1 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................AAGACAACAACGGTGCGAAGTG. 22 0 5 0.20 1 0 1 0 0 0 0
....................................................................................................................................ATAAAGACAACAACGGTGCGAAGTGG 26 1 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................TAAGAAAAGAAAGACAACAACGGTG........ 25 0 5 0.20 1 0 1 0 0 0 0
...................................................................................................................................AAGAAAGACAACAACGGTGCGAAGTG. 26 0 5 0.20 1 1 0 0 0 0 0
....................................................................................................................................AGAAAGACAACAACGGTGCG...... 20 0 5 0.20 1 1 0 0 0 0 0
.................................................................................................................................ATAAGAAAGACAACAACGGTGC....... 22 1 5 0.20 1 1 0 0 0 0 0
.....................................................................................................................................GGAAGACAACAACGGTGCGAAGTGG 25 1 5 0.20 1 1 0 0 0 0 0
....................................................................................................................................AGAAAGACAACAACGGTGCGAAGTG. 25 0 5 0.20 1 0 1 0 0 0 0
..................................................................................................................................AAAGAAAGACAACAACGGTGCGAAG... 25 0 5 0.20 1 1 0 0 0 0 0
.............................................................................................................................TAAGAAAAGAAAGACAACAACGGTGCGA..... 28 0 5 0.20 1 1 0 0 0 0 0
......................................................................................................................................AAAGACAACAACGGTGCGAAG... 21 0 5 0.20 1 0 1 0 0 0 0
.TTGGCAGCCCAGCGACAGGGG........................................................................................................................................ 21 0 20 0.20 4 0 2 2 0 0 0
.....................................................................................................................................GGAAGACAACAACGGTGCGAAGT.. 23 1 5 0.20 1 1 0 0 0 0 0
....................................................................................................................................ATAAAGACAACAACGGTGCGAAGT.. 24 1 5 0.20 1 1 0 0 0 0 0
.......................................................TCCGAATGGCGGCGTGAAGCTTGCGTT............................................................................ 27 0 19 0.16 3 1 0 0 1 1 0
......AGCCCAGCGACAGGGGGGATC................................................................................................................................... 21 0 20 0.15 3 0 0 3 0 0 0
..............................................................................................................................AAGAAAACAAAGACAACAACGA.......... 22 2 7 0.14 1 1 0 0 0 0 0
...................................................TAGGTCCGAATGGCGGCGTGAAGCTTG................................................................................ 27 0 19 0.11 2 0 2 0 0 0 0
....GCAGCCCAGCGACAGGGGG....................................................................................................................................... 19 0 20 0.10 2 0 1 1 0 0 0
..TGGCAGCCCAGCGACAGGGGG....................................................................................................................................... 21 0 20 0.10 2 0 0 2 0 0 0
..............................................................................................................................AAGAAAAGAAAGCCAACAA............. 19 1 10 0.10 1 1 0 0 0 0 0
...............ACAGGGGGGATCATGTACGA........................................................................................................................... 20 0 20 0.10 2 0 2 0 0 0 0
..........................................................GAATGGCGGCGTGAAGCTTGC............................................................................... 21 0 20 0.10 2 0 0 2 0 0 0
...................................................TAGGTCCGAATGGCGGCGTG....................................................................................... 20 0 20 0.10 2 0 2 0 0 0 0
......AGCCCAGCGACAGGGGGGAT.................................................................................................................................... 20 0 20 0.10 2 0 0 2 0 0 0
.........................................................................................................................................GACAACACCGGTGCCAAG... 18 2 11 0.09 1 0 1 0 0 0 0
..........................................................................................................................GATCGAGAAAAGAAAGACA................. 19 2 14 0.07 1 1 0 0 0 0 0
........................................................CCGAATGGCGGCGTGAAGCTTGCGT............................................................................. 25 0 19 0.05 1 0 0 0 0 1 0
...................................................TAGGTCCGAATGGCGGCGTGAAGCTTT................................................................................ 27 1 19 0.05 1 0 1 0 0 0 0
.......................................................TCCGAATGGCGGCGTGAAGCTTGCGT............................................................................. 26 0 19 0.05 1 0 1 0 0 0 0
.......................................................TCCGAATGGCGGCGTGAAGCTT................................................................................. 22 0 19 0.05 1 1 0 0 0 0 0
...................................................TAGGTCCGAATGGCGGCGTGAAGCTT................................................................................. 26 0 19 0.05 1 0 1 0 0 0 0
.......................................................TCCGAATGGCTGCGTGAAGCTTGC............................................................................... 24 1 19 0.05 1 0 0 0 1 0 0
...................................................TAGGTCCGAATGGCGGCGTGAAGCT.................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
..............GACAGGGGGGATCATGTACGAT.......................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
GTTGGCAGCCCAGCGACAGGGG........................................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0
..................................................GTAGGTCCGAATGGCGGCGTG....................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
.TTGGCAGCCCAGCGACAGGGGGGAT.................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
..............GACAGGGGGGATCATGTACGATC......................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
..................................................GTAGGTCCGAATGGCGGCG......................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0
.TTGGCAGCCCAGCGACAGG.......................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0
..........................................................GAATGGCGGCGTGAAGCTTGCGTT............................................................................ 24 0 20 0.05 1 0 0 0 0 1 0
............................................................ATGTCGGCGTGAAGCTTTC............................................................................... 19 2 20 0.05 1 0 0 1 0 0 0
.......GCCCAGCGGCAGGGGGGATCATGTACGA........................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0
................................................................CGGCGTGAAGCTTGCGTTCTT......................................................................... 21 0 20 0.05 1 0 0 1 0 0 0
............................................................ATGGCGGCGTGAAGCTTGCG.............................................................................. 20 0 20 0.05 1 0 1 0 0 0 0
...................................................TAGGTCCGAATGGCGGCGTGAAG.................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
.......GCCCAGCGACAGGGGGGATCA.................................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0
...GGCAGCCCAGCGACAGGGGGGATCATG................................................................................................................................ 27 0 20 0.05 1 0 1 0 0 0 0
..........CAGCGACAGGGGGGATCATGTACGA........................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0
....................................................AGGTCCGAATGGCGGCGTGA...................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0
.TTGGCAGCCCAGCGACAGGGGGGATCA.................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
...........................................................AATGGCGGCGTGAAGCTTTC............................................................................... 20 1 20 0.05 1 0 0 0 0 0 1
.TCGGCAGCCCAGCGACAGGGG........................................................................................................................................ 21 1 20 0.05 1 0 0 1 0 0 0
.......GCCCAGCGACAGGGGGGATCATGTAC............................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0
.......GCCCAGCGACAGGGGGGATCATG................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0
GTTGGCAGCCCAGCGACAGGG......................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
...GGCAGCCCAGCGACAGGGGGGT..................................................................................................................................... 22 1 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................TAAGAAAAGAAAGAGAAGAA............. 20 2 20 0.05 1 1 0 0 0 0 0
........CCCAGCGACAGGGGGGATCATG................................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................AAGAAAAGAGAGACCACCAC............ 20 3 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................AGAAAAGAAAGGCCACAACT........... 20 3 20 0.05 1 1 0 0 0 0 0
................................................................................................................................GAAAAGAAAGACAACACCA........... 19 2 20 0.05 1 1 0 0 0 0 0
GTTGGCAGCCCAGCGACAGGGGGGA..................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0
.TTGGCAGCCCAGCGACAGGGGGGA..................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0
..........................................................................................................................GATTAACAAAAGAAAGAGA................. 19 2 20 0.05 1 1 0 0 0 0 0
..............................................................................................................................AAGAAAAAAAAGACAACACC............ 20 2 20 0.05 1 1 0 0 0 0 0
...GGCAGCCCAGCGACAGGGGGG...................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

CAACCGTCGGGTCGCTGTCCCCCCTAGTACATGCTAGGTTGCCCATACTACATCCAGGCTTACCGCCGCACTTCGAACGCAAGAAAGGGTGCACTTGGCCGCTGTGTCCATATGCCCCGACTCTAATTCTTTTCTTTCTGTTGTTGCCACGCTTCACC
**************************************************...........((....(((.....((((((........))))))....)))...)).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M044
female body
 M058
embryo
 V039
embryo
 V055
head
 V105
male body		 V106
head
....................CCCCTAGTACATGCTAGGTTGCCCAT................................................................................................................ 26 0 1 2.00 2 0 2 0 0 0 0
.....................................................................ACTTCGAACGCAAGAAAGGGTGCACT............................................................... 26 0 2 1.00 2 1 1 0 0 0 0
.........................................................................................CGCACTTGGTCGCTGTGGCCAT............................................... 22 3 1 1.00 1 0 0 1 0 0 0
..................................................................................................................CCCCGACTCTAATTCTTTTCTTTCTGT................. 27 0 2 1.00 2 1 1 0 0 0 0
..............CTGTCCCCCCTAGTACATGCTAGGT....................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................GTTGCCCATACTACATCCAGGCTTACCG............................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................GGTGCACTTGGCCGCTGTGTCCATAT............................................. 26 0 1 1.00 1 1 0 0 0 0 0
............CGCTGTCCCCCCTAGTACATGCTAGGT....................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.....................................................CCAGGCTTACCGCCGCACTTCGAACGC.............................................................................. 27 0 19 0.95 18 9 9 0 0 0 0
.........GGTCGCTGTCCCCCCTAGTACATGCT........................................................................................................................... 26 0 20 0.70 14 13 1 0 0 0 0
.......................................TGCCCATACTACATCCAGGCTTACCG............................................................................................. 26 0 3 0.67 2 1 1 0 0 0 0
..............................................ACTACATCCAGGCTTACCGCCGCACTT..................................................................................... 27 0 3 0.67 2 2 0 0 0 0 0
.................................................................CCGCACTTCGAACGCAAGAAAGTG..................................................................... 24 1 2 0.50 1 0 1 0 0 0 0
.....................................................................................................................CGACTCTAATTCTTTTCTTTCTGTTG............... 26 0 2 0.50 1 0 1 0 0 0 0
...................................................................................................................CCCGACTCTAATTCTTTTCTTTCTGTT................ 27 0 2 0.50 1 0 1 0 0 0 0
.........................................................................CGAACGCAAGAAAGGGTGCAC................................................................ 21 0 2 0.50 1 0 1 0 0 0 0
.......................................................................TTCGAACGCAAGAAAGGGTGCA................................................................. 22 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................................CCGACTCTAATTCTTTTCTTTCTGT................. 25 0 2 0.50 1 0 1 0 0 0 0
...................................................................................................................CCCGACTCTAATTCTTTTCTTTCTGTTG............... 28 0 2 0.50 1 0 1 0 0 0 0
.....................................................CCAGGCTTACCGCCGCACTTCGAACG............................................................................... 26 0 19 0.47 9 1 8 0 0 0 0
.......CGGGTCGCTGTCCCCCCTAGTACATGCT........................................................................................................................... 28 0 20 0.40 8 7 1 0 0 0 0
.......................................TGCCCATACTACATCCAAGCTTACCG............................................................................................. 26 1 3 0.33 1 1 0 0 0 0 0
.......................................TGCCCATACTACATCCAGGCTTACC.............................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0
................GTCCCCCCTAGTACATGCTAG......................................................................................................................... 21 0 20 0.30 6 6 0 0 0 0 0
..............CTGTCCCCCCTAGTACATGCT........................................................................................................................... 21 0 20 0.30 6 5 0 0 0 0 1
.......CGGGTCGCTGTCCCCCCTAGT.................................................................................................................................. 21 0 20 0.25 5 5 0 0 0 0 0
CAACCGTCGGGTCGCTGTCCCCCCT..................................................................................................................................... 25 0 20 0.25 5 5 0 0 0 0 0
........GGGTCGCTGTCCCCCCTAGTACATGCT........................................................................................................................... 27 0 20 0.25 5 5 0 0 0 0 0
.............GCTGTCCCCCCTAGTACATGC............................................................................................................................ 21 0 20 0.25 5 5 0 0 0 0 0
..........GTCGCTGTCCCCCCTAGTACATGCT........................................................................................................................... 25 0 20 0.25 5 5 0 0 0 0 0
.....................................................................................AGGGTCTACTTGGCCGCT....................................................... 18 2 4 0.25 1 1 0 0 0 0 0
.....................................................CCAGGCTTACCGCCGCACTTCGAAC................................................................................ 25 0 19 0.21 4 0 4 0 0 0 0
.....................................................CCAGGCTTACCGCCGCACTTCGAACGCAA............................................................................ 29 0 19 0.21 4 2 2 0 0 0 0
.................................................................................................................................TTTTCTTTCTGTTGTTGCCAC........ 21 0 5 0.20 1 1 0 0 0 0 0
..................................................................................................................................TTTCTTTCTGTTGTTGCCACGCTTCA.. 26 0 5 0.20 1 1 0 0 0 0 0
.....GTCGGGTCGCTGTCCCCCCT..................................................................................................................................... 20 0 20 0.20 4 4 0 0 0 0 0
......................................TTGCCCATACTCCATCCAGGCTTAACG............................................................................................. 27 2 5 0.20 1 0 1 0 0 0 0
.......................................................AGGCTTACCGCCGCACTTCGA.................................................................................. 21 0 20 0.20 4 4 0 0 0 0 0
....................................................TCCAGGCTTACCGCCGCACTT..................................................................................... 21 0 20 0.20 4 2 0 0 1 1 0
....................................................................................................................................TCTTTCTGTTGTTGCCACGCTTCAC. 25 0 5 0.20 1 1 0 0 0 0 0
.....GTCGGGTCGCTGTCCCCCCTA.................................................................................................................................... 21 0 20 0.20 4 4 0 0 0 0 0
..........GTCGCTGTCCCCCCTAGTACA............................................................................................................................... 21 0 20 0.20 4 4 0 0 0 0 0
......................................................CAGGCTTACCGCCGCACTTCGAACGC.............................................................................. 26 0 19 0.16 3 1 1 0 0 1 0
.................................................................CCGCACTTCGAACGCAAGAAA........................................................................ 21 0 19 0.16 3 2 1 0 0 0 0
.............................................................ACCGCCGCACTTCGAACGCAAGAAA........................................................................ 25 0 19 0.16 3 3 0 0 0 0 0
............CGCTGTCCCCCCTAGTACATGCTAG......................................................................................................................... 25 0 20 0.15 3 3 0 0 0 0 0
............CGCTGTCCCCCCTAGTACATG............................................................................................................................. 21 0 20 0.15 3 3 0 0 0 0 0
.......CGGGTCGCTGTCCCCCCTAGTACAT.............................................................................................................................. 25 0 20 0.15 3 1 0 2 0 0 0
..............................................................CCGCCGCACTTCGAACGCAAGAAA........................................................................ 24 0 19 0.11 2 0 1 1 0 0 0
..............................................................CCGCCGCACTTCGAAAGCAAGAAA........................................................................ 24 1 19 0.11 2 2 0 0 0 0 0
.....................................................CCAGGCTTACCGCCGCACTTCGAACGCA............................................................................. 28 0 19 0.11 2 0 2 0 0 0 0
......................................................CAGGCTTACCGCCGCACTTCGAACGCAA............................................................................ 28 0 19 0.11 2 2 0 0 0 0 0
...............................................................CGCCGCACTTCGAACGCAAGAAA........................................................................ 23 0 19 0.11 2 0 2 0 0 0 0
........GGGTCGCTGTCCCCCCTAGTACAT.............................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0 0
...CCGTCGGGTCGCTGTCCCCCCT..................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0
................GTCCCCCCTAGTACATGCTA.......................................................................................................................... 20 0 20 0.10 2 2 0 0 0 0 0
...CCGTCGGGTCGCTGTCCCCCCTAGTACAT.............................................................................................................................. 29 0 20 0.10 2 2 0 0 0 0 0
..ACCGTCGGGTCGCTGTCCCCCCT..................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0
......TCGGGTCGCTGTCCCCCCTAG................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0
CAACCGTCGGGTCGCTGTCCCCCCTAGT.................................................................................................................................. 28 0 20 0.10 2 2 0 0 0 0 0
........CGGTCGCTGTCCCCCCTAGTAC................................................................................................................................ 22 1 20 0.10 2 2 0 0 0 0 0
........GGGTCGCTGTCCCCCCTAGT.................................................................................................................................. 20 0 20 0.10 2 2 0 0 0 0 0
..................................................CATCCAGGCTTACCGCCGCAC....................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0
.........GGTCGCTGTCCCCCCTAGTAC................................................................................................................................ 21 0 20 0.10 2 2 0 0 0 0 0
.......CGCGTCGCTGTCCCCCTTAGTACATGCT........................................................................................................................... 28 2 20 0.10 2 2 0 0 0 0 0
................................................................GCCGCACTTCGAACGCAAGAA......................................................................... 21 0 20 0.10 2 2 0 0 0 0 0
...................................................ATCCAGGCTTACCGCCGCACT...................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0
.......CGGGTCGCTGTCCCCCCTAGTACATG............................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0 0
..................................................CATCCAGGCTTACCGCCGCACTTCGA.................................................................................. 26 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................TGCCCGGACTCTAATTCTC........................... 19 2 18 0.06 1 0 0 0 1 0 0
..................................................CATCCAGGCTTACCGCCGCACTTCGAA................................................................................. 27 0 19 0.05 1 1 0 0 0 0 0
....................................................TCCAGGCTTACCGCCGCACTTCGAAC................................................................................ 26 0 19 0.05 1 1 0 0 0 0 0
...................................................ATCCAGGCTTACCGCCGCACTTCGAAG................................................................................ 27 1 19 0.05 1 1 0 0 0 0 0
...........................................................TTACCGCCGCACTTCGAACGCAAGAAA........................................................................ 27 0 19 0.05 1 1 0 0 0 0 0
.........................................................GCTTACCGCCGCACTTCGAACGCAAG........................................................................... 26 0 19 0.05 1 1 0 0 0 0 0
.....................................................CCAGGCTTACCGCCGCAGTTCGAACG............................................................................... 26 1 19 0.05 1 1 0 0 0 0 0
....................................................TCCAGGCTTACCGCCGCACTTCGAA................................................................................. 25 0 19 0.05 1 1 0 0 0 0 0
.......................................................AGGCATACCGCCGCACTTCGAACGCAAG........................................................................... 28 1 19 0.05 1 1 0 0 0 0 0
......................................................CAGGCTTACCGCCGCACTTCGAAC................................................................................ 24 0 19 0.05 1 1 0 0 0 0 0
..............................................................CCGTCGCACTTCGAACGCAAGAAA........................................................................ 24 1 19 0.05 1 0 0 0 0 1 0
.....................................................CCAGGCTTACCGCCGCACTCCGAACGC.............................................................................. 27 1 19 0.05 1 0 1 0 0 0 0
...................................................ATCCAGGCTTACCGCCGCACTTCGAAC................................................................................ 27 0 19 0.05 1 0 1 0 0 0 0
.......................................................AGGCTTACCGCCGCACTTCGAACGC.............................................................................. 25 0 19 0.05 1 1 0 0 0 0 0
........................................................GGCTTACCGCCGCACTTCGAACTCAA............................................................................ 26 1 19 0.05 1 1 0 0 0 0 0
.....................................................CCAGGCTTACCGCCGCACTTCGAACTC.............................................................................. 27 1 19 0.05 1 0 1 0 0 0 0
........................................................GGCTTACCGCCGCACTTCGAACGCAA............................................................................ 26 0 19 0.05 1 1 0 0 0 0 0
...................................................TTCCAGGCTTACCGCCGCACTTCGAACG............................................................................... 28 1 19 0.05 1 1 0 0 0 0 0
........................................................GGCTTACCGCCGAACTTCGAA................................................................................. 21 1 19 0.05 1 1 0 0 0 0 0
........................................................GGCTTACCGCCGCACTTCGAACGCAAG........................................................................... 27 0 19 0.05 1 1 0 0 0 0 0
........................................................GGCTTACCGCCGCACTTCGAA................................................................................. 21 0 19 0.05 1 1 0 0 0 0 0
.........................................................GCTTACCGCCGCACTTCGAACGCAAGAA......................................................................... 28 0 19 0.05 1 1 0 0 0 0 0
......................................................CAGGCTTACCGCCGCACTTCGAACG............................................................................... 25 0 19 0.05 1 1 0 0 0 0 0
.....................................................CCAGGCTTACCGCCGCAATTCGAACG............................................................................... 26 1 19 0.05 1 1 0 0 0 0 0
........GGGTCGCTGTCCCCCCTAGTA................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
.....GTCGGGTCGCTGTCCCCCCTAGTACAT.............................................................................................................................. 27 0 20 0.05 1 0 0 0 0 1 0
.........GGTCGCTGTCCCCCCTAGT.................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
.....................................................CCAGGCTTACCGCCGCACTTC.................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
....................................................TCCAGGCTTACCGCCGCACT...................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
...........TCGCTGTCCCCCCTAGTACATGCTAG......................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
......TCGGGTCGCTGTCCCCCCTAGTACATC............................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0
......TCGGGTCGCTGTCCCCCCTAGTACATG............................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0
.............................................................ACCGCCGCACTTCGAACGCAAG........................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
....CGTCGGGTCGCTGTCCCCCCT..................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
.....GTCGGGTCGCTGTCCCCCCTAGTAC................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
..................................................CATCCAGGCTTACCGCCGCACTTCG................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
.....GTCGGGTCGCTGTCACCCCTAGT.................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0
...CCGTCGGGTCGCTGTCCCCCCTAGTAC................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0 0
......TCGGGTCGCTGTCCCGCCTAGTAC................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0
............CGCTGTCCCCCCTAGTACAT.............................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0 0
..............................................................CCGCCGCACTTCGAACGCAA............................................................................ 20 0 20 0.05 1 0 1 0 0 0 0
...........CCGCTGTCCCCCCTAGTACATGCTA.......................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0
.......CGGGTCGCTGTCGCCCCTAGT.................................................................................................................................. 21 1 20 0.05 1 1 0 0 0 0 0
............CGCTGTCCCCCCAAGTACATG............................................................................................................................. 21 1 20 0.05 1 1 0 0 0 0 0
.................................................................CCGCACTGCCAACCCAAGA.......................................................................... 19 3 20 0.05 1 0 0 1 0 0 0
......TCGGGTCGCTGTCCCCCCTAGT.................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0 0
...........TCGCTGTCCCCCCTAGTACAT.............................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
..ACCGTCGGGTCGCTGTCCCCCC...................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
......TCGGGTCGCTGTCCCCCCTAGTACAT.............................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0
....CGTCGGGTCGCTGTCCCCCC...................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
.........GGTCGCTGTCCCCCCTAGTACATGCTC.......................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
.......CGGGTCGCTGTCCCACCTAGTAC................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0
.......CGGGTCGCTGTCCCCCCTAG................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0
...............TGTCCCCCCTAGTACATGCTAG......................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0
.....................................................CCAGGCTTACCGCCGCACTTCGA.................................................................................. 23 0 20 0.05 1 0 1 0 0 0 0
............................................................TACCGCCGCACTTCGAACGCAAGAA......................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
........GGGTCGCTGTCCCCCGTAGTACAT.............................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0
..............................................................CCGCCGCACTTCGAACGCAAG........................................................................... 21 0 20 0.05 1 1 0 0 0 0 0
...........TCGCTGTCCCCCCTAGTACATGCT........................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
...........TCGCCGTCCCCCCTAGTACATGCT........................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
........GGGTCGCTGTCCCCCCTAGTAAAT.............................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
...........................................................TTACCGCCGCACTTCGAACGCAAG........................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
.....................................................CCAGGCTTACCTCCGCACTT..................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0
....................................GGATGCCCATACTTCATG........................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0
.......CGGGTCGCTGTCCCCCCTAGTAC................................................................................................................................ 23 0 20 0.05 1 0 0 1 0 0 0
.............................................................ACCGCCGCACTTCGAACGCAAGA.......................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
........................................................GGCTTACCGCCGCACTTCGA.................................................................................. 20 0 20 0.05 1 0 0 0 0 0 1
.......CGGGTCGCTGTCCCCCCTAGTC................................................................................................................................. 22 1 20 0.05 1 0 0 0 0 0 1
.........GGTCGCTGTCCCCCCTAGTACAT.............................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
.........GGTCGCTGTCCCGCCTAGTAC................................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0
..................................................................CCCACTGCCAACGCAAGAAA........................................................................ 20 3 20 0.05 1 0 0 0 1 0 0
.......CGGGTCGCTGTGCCCCCTAG................................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0
..........GTCGCTGTCCCCCCTAGTACATG............................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0
..........................................................CTTACCGCCGCACTTCGAACG............................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
.......TTGGTCGCTGTCCCCCCTAGTACAT.............................................................................................................................. 25 2 20 0.05 1 1 0 0 0 0 0
.....TTCGGGTCGCTGTCCCCCCTAGTACAT.............................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0
.....TTCGGGTCGCTGTCCCCCCTAG................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0
........GGGTCGCTGTCCCCCCTAGTACATGCTA.......................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
...........................................................TTACCGCCGCACTTCGAACGC.............................................................................. 21 0 20 0.05 1 1 0 0 0 0 0
..................CCCCCCTAGTACACGCAA.......................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0
.AACCGTCGGGTCGCTGTCCCCCC...................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
....CGTCGGGTCGCTGTCCCCCCTAGTACAT.............................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0
.........GGTCGCTGTCCCCCCTAGTACATGC............................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0
..............................................................CCGCCGCACTTCGAACGCAAGAA......................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
....CGTCGGGTCGCTGTCCCCCGTAGTACAT.............................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0 0
..........GTCGCTGTCCCCCCTAATACATGCT........................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0
.............GCTGTCCCCCCTGGTACATGC............................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0
........GGGTCGCTGTCCCCCCTAGTACATG............................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
........GGGTCGCTGTCCCCCCTAGTAC................................................................................................................................ 22 0 20 0.05 1 0 0 0 1 0 0
............CGCTGTCCCCCCTAGTACATGCT........................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
...CCGTCGGCTCGCTGTCCCCCGTAGTACAT.............................................................................................................................. 29 2 20 0.05 1 1 0 0 0 0 0
.............GCTGTCCCCCCTAGTACATG............................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droAna3 scaffold_13417:3555215-3555372 - dan_3333 GTTGGCAGCCCAGCGACAGGGGGGATCATGTACGATCCAACGGGTATGATGTAGGTCCGAATGGCGGCGTGAAGCTTGCGTTCTTTCCCACGTGAACCGGCGACAC--AGGTATACGGGGCTGAGATTAAGAAAAGAAAGAC-----------AACAACGGTGCGAAGTGG
droBip1 scf7180000391433:7971-8127 + GTTGGCAGCCCAGCAACAGGGTGGGTCGAATATGAAGAAACGAGTGCGGGAAAAGGCTGGACGGTCATAGGGGGCGTGCTTTCTTTTCACTTTAGCCCGTCGACAACAAAGTAAGTGAAATTAAAGAGAAGGAGGAGAAAAA-----------GTAATTGATGCAA---GA
droRho1 scf7180000780219:4157-4246 + TTT---------------------------------------------------------------------------CGTTTTTCACACTGCAAACAGATGACAC--AAGAAAATGGGGATGGGGATGAGAAAAGAGATGCCAAACTACGAGAGCAAAGGCGAGAA----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droAna3
GTTGGCAGCCCAGCGACAGGGGGGATCATGTACGATCCAACGGGTATGATGTAGGTCCGAATGGCGGCGTGAAGCTTGCGTTCTTTCCCACGTGAACCGGCGACAC--AGGTATACGGGGCTGAGATTAAGAAAAGAAAGAC-----------AACAACGGTGCGAAGTGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................GAAAGAC-----------AACAACGGTGCGAAGTGG2552.80142120000
.......................................................................................................................................GAAAGAC-----------AACAACGGTGCGAAGT..2350.804310000
...............................................................................................................................TAAGAAAAGAAAGAC-----------AACAACGGTGC.......2650.804040000
............................................TATGATGTAGGTCCGAATGGCGGC.......................................................................................................2430.672020000
.......................................................................................................................................GAAAGAC-----------AACAACGGTGCGAAGTG.2450.603030000
........................................................................................................................................AAAGAC-----------AACAACGGTGCGAAGTGG2450.402110000
.....................................................................................................................................AAGAAAGAC-----------AACAACGGTGCGAAG...2450.402110000
............................................TATGATGTAGGTCCGAATGGCGTG.......................................................................................................2430.331001000
............................................TATGATGTAGGTCCGAATGGCGGCGT.....................................................................................................2630.331100000
............................................TATGATGTAGGTCCGAATGGCGA........................................................................................................2330.331010000
............................................TATGATGTAGGTCCGAATGGCG.........................................................................................................2230.331001000
............................................TATGATGTAGGTCCGAATGG...........................................................................................................2030.331001000
...................................................TAGGTCCGAATGGCGGCGTGA...................................................................................................21200.306600000
....GCAGCCCAGCGACAGGGGGGA..................................................................................................................................................21200.306000006
.......................................................TCCGAATGGCGGCGTGAAGCTTGC............................................................................................24190.214013000
......................................................................................................................................AGAAAGAC-----------AACAACGGTGCGAAG...2350.201010000
.............................................................................................................................ATTAAGAAAAGAAAGAC-----------AACAACGGTGC.......2850.201010000
............................................................ATGGCGGCGTGAAGCTTGC............................................................................................19200.204000013
.................................................................................................................................AGAAAAGAAAGAC-----------AACAACGGTGC.......2450.201010000
........................................................................................................................................AAAGAC-----------AACAACGGTGCGAAGTGT2450.201010000
.........................................................................................................................................AAGAC-----------AACAACGGTGCGAAGTG.2250.201100000
...............................................................................................................................TAAGAAAAGAAAGAC-----------AACAACGGTG........2550.201100000
.....................................................................................................................................AAGAAAGAC-----------AACAACGGTGCGAAGTG.2650.201010000
......................................................................................................................................AGAAAGAC-----------AACAACGGTGCG......2050.201010000
......................................................................................................................................AGAAAGAC-----------AACAACGGTGCGAAGTG.2550.201100000
....................................................................................................................................AAAGAAAGAC-----------AACAACGGTGCGAAG...2550.201010000
...............................................................................................................................TAAGAAAAGAAAGAC-----------AACAACGGTGCGA.....2850.201010000
........................................................................................................................................AAAGAC-----------AACAACGGTGCGAAG...2150.201100000
.TTGGCAGCCCAGCGACAGGGG.....................................................................................................................................................21200.204200002
.......................................................TCCGAATGGCGGCGTGAAGCTTGCGTT.........................................................................................27190.163011010
......AGCCCAGCGACAGGGGGGATC................................................................................................................................................21200.153000003
...................................................TAGGTCCGAATGGCGGCGTGAAGCTTG.............................................................................................27190.112200000
....GCAGCCCAGCGACAGGGGG....................................................................................................................................................19200.102100001
..TGGCAGCCCAGCGACAGGGGG....................................................................................................................................................21200.102000002
...............ACAGGGGGGATCATGTACGA........................................................................................................................................20200.102200000
..........................................................GAATGGCGGCGTGAAGCTTGC............................................................................................21200.102000002
...................................................TAGGTCCGAATGGCGGCGTG....................................................................................................20200.102200000
......AGCCCAGCGACAGGGGGGAT.................................................................................................................................................20200.102000002
........................................................CCGAATGGCGGCGTGAAGCTTGCGT..........................................................................................25190.051000010
...................................................TAGGTCCGAATGGCGGCGTGAAGCTTT.............................................................................................27190.051100000
.......................................................TCCGAATGGCGGCGTGAAGCTTGCGT..........................................................................................26190.051100000
.......................................................TCCGAATGGCGGCGTGAAGCTT..............................................................................................22190.051010000
...................................................TAGGTCCGAATGGCGGCGTGAAGCTT..............................................................................................26190.051100000
...................................................TAGGTCCGAATGGCGGCGTGAAGCT...............................................................................................25200.051010000
..............GACAGGGGGGATCATGTACGAT.......................................................................................................................................22200.051100000
GTTGGCAGCCCAGCGACAGGGG.....................................................................................................................................................22200.051100000
..................................................GTAGGTCCGAATGGCGGCGTG....................................................................................................21200.051100000
.TTGGCAGCCCAGCGACAGGGGGGAT.................................................................................................................................................25200.051100000
..............GACAGGGGGGATCATGTACGATC......................................................................................................................................23200.051010000
..................................................GTAGGTCCGAATGGCGGCG......................................................................................................19200.051100000
.TTGGCAGCCCAGCGACAGG.......................................................................................................................................................19200.051000001
..........................................................GAATGGCGGCGTGAAGCTTGCGTT.........................................................................................24200.051000010
................................................................CGGCGTGAAGCTTGCGTTCTT......................................................................................21200.051000001
............................................................ATGGCGGCGTGAAGCTTGCG...........................................................................................20200.051100000
...................................................TAGGTCCGAATGGCGGCGTGAAG.................................................................................................23200.051100000
.......GCCCAGCGACAGGGGGGATCA...............................................................................................................................................21200.051000001
...GGCAGCCCAGCGACAGGGGGGATCATG.............................................................................................................................................27200.051100000
..........CAGCGACAGGGGGGATCATGTACGA........................................................................................................................................25200.051100000
....................................................AGGTCCGAATGGCGGCGTGA...................................................................................................20200.051000010
.TTGGCAGCCCAGCGACAGGGGGGATCA...............................................................................................................................................27200.051100000
.......GCCCAGCGACAGGGGGGATCATGTAC..........................................................................................................................................26200.051000001
.......GCCCAGCGACAGGGGGGATCATG.............................................................................................................................................23200.051100000
GTTGGCAGCCCAGCGACAGGG......................................................................................................................................................21200.051100000
...GGCAGCCCAGCGACAGGGGGGT..................................................................................................................................................22200.051000001
........CCCAGCGACAGGGGGGATCATG.............................................................................................................................................22200.051100000
GTTGGCAGCCCAGCGACAGGGGGGA..................................................................................................................................................25200.051000001
.TTGGCAGCCCAGCGACAGGGGGGA..................................................................................................................................................24200.051100000
...GGCAGCCCAGCGACAGGGGGG...................................................................................................................................................21200.051000001
droBip1
GTTGGCAGCCCAGCAACAGGGTGGGTCGAATATGAAGAAACGAGTGCGGGAAAAGGCTGGACGGTCATAGGGGGCGTGCTTTCTTTTCACTTTAGCCCGTCGACAACAAAGTAAGTGAAATTAAAGAGAAGGAGGAGAAAAA-----------GTAATTGATGCAA---GASizeHit CountTotal NormTotal
No Reads
droRho1
TTT---------------------------------------------------------------------------CGTTTTTCACACTGCAAACAGATGACAC--AAGAAAATGGGGATGGGGATGAGAAAAGAGATGCCAAACTACGAGAGCAAAGGCGAGAA----SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 07:02 AM